BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029953
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FH2|A Chain A, The Crystal Structure Of The Probable Atp-Dependent
Protease (Heat Shock Protein) From Corynebacterium
Glutamicum
Length = 146
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA R +A+ EAR L + GTE L+G++ EG AK L + GI+L VR+E
Sbjct: 6 RFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEV 65
Query: 144 LNLLGKSDLFFFSP--ERPPLTEQAQRALDWAFNEKLKSGS 182
++G+ P P T +A++ L+ + E L+ G
Sbjct: 66 EEIIGQGS----QPTTGHIPFTPRAKKVLELSLREGLQMGH 102
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVR 140
IP ++ RA + ++ E ++ + GTE L+G++ EG A+ L G L +VR
Sbjct: 79 HIP-FTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVR 137
Query: 141 EETLNLL 147
++ + LL
Sbjct: 138 QQVIQLL 144
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 11/102 (10%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA + A+A+ EA +L + N GTE L+G++ EG AK L+A G+ K+++E
Sbjct: 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEV 64
Query: 144 LNLLGK----SDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
+L+G+ S ++P +A++ ++ + +E K G
Sbjct: 65 ESLIGRGQEMSQTIHYTP-------RAKKVIELSMDEARKLG 99
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ EG A+ L G++L K R++ L
Sbjct: 80 YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVL 139
Query: 145 NLLGKSD 151
LLG ++
Sbjct: 140 QLLGSNE 146
>pdb|2Y1Q|A Chain A, Crystal Structure Of Clpc N-Terminal Domain
Length = 150
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA + A+A+ EA +L + N GTE L+G++ EG AK L+A G+ K+++E
Sbjct: 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEV 64
Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
+L+G++ + P +A++ ++ + +E K G
Sbjct: 65 ESLIGRAQEMSQTIHYTP---RAKKVIELSMDEARKLG 99
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ EG A+ L G++L K R++ L
Sbjct: 80 YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVL 139
Query: 145 NLLGKSD 151
LLG ++
Sbjct: 140 QLLGNNE 146
>pdb|2Y1R|A Chain A, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|B Chain B, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|C Chain C, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|D Chain D, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|E Chain E, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|F Chain F, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|G Chain G, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|H Chain H, Structure Of Meca121 & Clpc N-Domain Complex
Length = 149
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 58/103 (56%), Gaps = 11/103 (10%)
Query: 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREE 142
+++ RA + A+A+ EA +L + N GTE L+G++ EG AK L+A G+ K+++E
Sbjct: 4 GRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKE 63
Query: 143 TLNLLGK----SDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
+L+G+ S ++P +A++ ++ + +E K G
Sbjct: 64 VESLIGRGQEMSQTIHYTP-------RAKKVIELSMDEARKLG 99
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ EG A+ L G++L K R++ L
Sbjct: 80 YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVL 139
Query: 145 NLLGKSD 151
LLG ++
Sbjct: 140 QLLGSNE 146
>pdb|2K77|A Chain A, Nmr Solution Structure Of The Bacillus Subtilis Clpc N-
Domain
Length = 146
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 11/102 (10%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA + A+A+ EA +L + N GTE L+G++ EG AK L+A G+ K+++E
Sbjct: 6 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEV 65
Query: 144 LNLLGK----SDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
+L+G+ S ++P +A++ ++ + +E K G
Sbjct: 66 ESLIGRGQEMSQTIHYTP-------RAKKVIELSMDEARKLG 100
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ EG A+ L G++L K R++ L
Sbjct: 81 YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVL 140
Query: 145 NLLG 148
LLG
Sbjct: 141 QLLG 144
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 11/102 (10%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA + A+A+ EA +L + N GTE L+G++ EG AK L+A G+ K+++E
Sbjct: 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEV 64
Query: 144 LNLLGK----SDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
+L+G+ S ++P +A++ ++ + +E K G
Sbjct: 65 ESLIGRGQEMSQTIHYTP-------RAKKVIELSMDEARKLG 99
Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ EG A+ L G++L K R++ L
Sbjct: 80 YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVL 139
Query: 145 NLLGKSD 151
LLG ++
Sbjct: 140 QLLGSNE 146
>pdb|4EV4|A Chain A, Crystal Structure Of Serratia Fonticola Carbapenemase
Sfc-1 E166a Mutant With The Acylenzyme Intermediate Of
Meropenem
Length = 283
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 92 SFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNL 146
+AEL A L+Y + G L+ L+ G F+R+ G +F++ L L
Sbjct: 94 GMTVAELSAATLQYSDNGAANLLLEKLIGGPEGMTSFMRSIGDNVFRLDRWALEL 148
>pdb|4EQI|A Chain A, Crystal Structure Of Serratia Fonticola Carbapenemase
Sfc-1
pdb|4EQI|B Chain B, Crystal Structure Of Serratia Fonticola Carbapenemase
Sfc-1
Length = 283
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 92 SFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNL 146
+AEL A L+Y + G L+ L+ G F+R+ G +F++ L L
Sbjct: 94 GMTVAELSAATLQYSDNGAANLLLEKLIGGPEGMTSFMRSIGDNVFRLDRWELEL 148
>pdb|4EUZ|A Chain A, Crystal Structure Of Serratia Fonticola Carbapenemase
Sfc-1 S70a- Meropenem Complex
Length = 283
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 92 SFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNL 146
+AEL A L+Y + G L+ L+ G F+R+ G +F++ L L
Sbjct: 94 GMTVAELSAATLQYSDNGAANLLLEKLIGGPEGMTSFMRSIGDNVFRLDRWELEL 148
>pdb|3FES|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
pdb|3FES|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
pdb|3FES|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
pdb|3FES|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
Length = 145
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA ++ +A A+ L + G+E L+G+L E AK L G T + +
Sbjct: 7 RFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKI 66
Query: 144 LNLLGK----SDLFFFSPERPPLTEQAQRALDWAFNEKLKS 180
++ GK S+ SP + E L F KLK+
Sbjct: 67 VDXEGKGEEISEDIVLSPRSKQILE-----LSGXFANKLKT 102
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 73 KPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRAN 132
K E S D + S R+ + ++ A KLK GTE L+ I+ EG K L
Sbjct: 72 KGEEISEDIV--LSPRSKQILELSGXFANKLKTNYIGTEHILLAIIQEGEGIANKILNYA 129
Query: 133 GIT 135
G+
Sbjct: 130 GVN 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,663,712
Number of Sequences: 62578
Number of extensions: 157637
Number of successful extensions: 321
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 18
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)