BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029953
(185 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GW78|CLP41_ARATH Clp protease-related protein At4g12060, chloroplastic
OS=Arabidopsis thaliana GN=At4g12060 PE=1 SV=1
Length = 241
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/130 (64%), Positives = 100/130 (76%), Gaps = 5/130 (3%)
Query: 54 KYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAF 113
+ H+S+ + SLPT S K PKWS RAI+SFAM ELEARKLKYPNTGTEA
Sbjct: 68 RIHKSAIS-----SLPTANPDLVVSDAKKPKWSWRAIKSFAMGELEARKLKYPNTGTEAL 122
Query: 114 LMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWA 173
LMGIL+EGTS T+KFLRAN I L+KVREET+ LLGK+D++FFSPE PPLTE AQRALD A
Sbjct: 123 LMGILIEGTSFTSKFLRANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSA 182
Query: 174 FNEKLKSGSL 183
++ LK+G +
Sbjct: 183 LDQNLKAGGI 192
>sp|Q9TM05|CLPC_CYACA ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Cyanidium caldarium GN=clpC PE=3 SV=1
Length = 854
Score = 57.4 bits (137), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ +A++ +A+ EAR+L + GTE L+GIL EGT AK L++ GITL R E
Sbjct: 35 RFTEKAVKVIMLAQEEARRLGHNFVGTEQILLGILGEGTGLAAKALKSMGITLKDARIEV 94
Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNE 176
++G+ F P T +A++ L+ A E
Sbjct: 95 EKIIGRGSGFV--AIEIPFTPRAKKILELAIEE 125
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVR 140
+IP ++ RA + +A E+R L + GTE L+G++ EG A+ L G+ L K+R
Sbjct: 108 EIP-FTPRAKKILELAIEESRILTHNYVGTEHLLLGLIKEGEGVAARVLENLGVDLPKLR 166
Query: 141 EETLNLLGKS 150
+ ++G++
Sbjct: 167 SNIIRMIGET 176
>sp|P31541|CLPAA_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A,
chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1
Length = 926
Score = 57.0 bits (136), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ +AI+ +A+ EAR+L + GTE L+G++ EGT AK L++ GI L R E
Sbjct: 96 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 155
Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
++G+ F P T +A+R L+ + E + G
Sbjct: 156 EKIIGRGSGFI--AVEIPFTPRAKRVLELSLEEARQLG 191
>sp|O78410|CLPC_GUITH ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Guillardia theta GN=clpC PE=3 SV=1
Length = 819
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ +AI+ +A+ EAR+L + GTE L+G++ EGT AK L++ G+ L R E
Sbjct: 4 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDARVEV 63
Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
++G+ F P T +A+R L+ + E + G
Sbjct: 64 EKIIGRGSGFV--AVEIPFTPRAKRVLELSLEEARQLG 99
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVR 140
+IP ++ RA R ++ EAR+L + GTE L+G++ EG A+ L + L KVR
Sbjct: 77 EIP-FTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLALDLTKVR 135
Query: 141 EETLNLLGKS 150
+ + LLG +
Sbjct: 136 TQVIRLLGDT 145
>sp|P46523|CLPA_BRANA ATP-dependent Clp protease ATP-binding subunit clpA homolog,
chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2
SV=1
Length = 874
Score = 56.6 bits (135), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ +AI+ +A+ EAR+L + GTE L+G++ EGT AK L++ GI L R E
Sbjct: 44 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 103
Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
++G+ F P T +A+R L+ + E + G
Sbjct: 104 EKIIGRGSGFV--AVEIPFTPRAKRVLELSLEEARQLG 139
>sp|Q2QVG9|CLPC2_ORYSJ Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC2 PE=2 SV=2
Length = 919
Score = 56.6 bits (135), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ +AI+ +A+ EAR+L + GTE L+G++ EGT AK L++ GI L R E
Sbjct: 91 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 150
Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
++G+ + F P T +A+R L+ + E + G
Sbjct: 151 EKIIGRGNGFV--AVEIPFTPRAKRVLELSLEEARQLG 186
>sp|Q7F9I1|CLPC1_ORYSJ Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC1 PE=2 SV=2
Length = 918
Score = 56.6 bits (135), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ +AI+ +A+ EAR+L + GTE L+G++ EGT AK L++ GI L R E
Sbjct: 90 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 149
Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
++G+ F P T +A+R L+ + E + G
Sbjct: 150 EKIIGRGSGFV--AVEIPFTPRAKRVLELSLEEARQLG 185
>sp|Q9FI56|CLPC1_ARATH Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana
GN=CLPC1 PE=1 SV=1
Length = 929
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ +AI+ +A+ EAR+L + GTE L+G++ EGT AK L++ GI L R E
Sbjct: 97 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 156
Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
++G+ F P T +A+R L+ + E + G
Sbjct: 157 EKIIGRGSGFV--AVEIPFTPRAKRVLELSLEEARQLG 192
>sp|P31542|CLPAB_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,
chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1
Length = 923
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ +AI+ +A+ EAR+L + GTE L+G++ EGT AK L++ GI L R E
Sbjct: 94 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 153
Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
++G+ F P T +A+R L+ + E + G
Sbjct: 154 EKIIGRGSGFV--AVEIPFTPRAKRVLELSLEEARQLG 189
>sp|Q9SXJ7|CLPC2_ARATH Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana
GN=CLPC2 PE=2 SV=1
Length = 952
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 17 QSFDAKRSSAPSFLPSSSMFGNKLLIRPQLNSSRFVTKYH--RSSATATVSFSLPTTVKP 74
QSF R APS L L RP S F+ KY +SS S +P +
Sbjct: 70 QSFSGLR--APSAL--------DYLGRP---SPGFLVKYKLAKSSGREKASRCVPKAM-- 114
Query: 75 ETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGI 134
+++ +AI+ +++ EAR+L + GTE L+G++ EGT AK L++ GI
Sbjct: 115 -------FERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGI 167
Query: 135 TLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
L R E ++G+ F P T +A+R L+ + E + G
Sbjct: 168 NLKDSRVEVEKIIGRGSGFV--AVEIPFTPRAKRVLELSLEEARQLG 212
>sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1
Length = 922
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ +AI+ +A+ EAR+L + GTE L+G++ EGT AK L++ GI L R E
Sbjct: 94 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 153
Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
++G+ F P T +A+R L+ + E + G
Sbjct: 154 EKIIGRGSGFV--AVEIPFTPRAKRVLELSQEEARQLG 189
>sp|P24428|CLPC_MYCLE Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium leprae (strain TN) GN=clpC PE=3 SV=2
Length = 848
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA R +A+ EAR L + GTE L+G++ EG AK L + GI+L VR +
Sbjct: 4 RFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLDSLGISLEAVRSQV 63
Query: 144 LNLLGKSDLFFFSPE-RPPLTEQAQRALDWAFNEKLKSG 181
+++G+ +P P T +A++ L+ + E L+ G
Sbjct: 64 EDIIGQGQQ---APSGHIPFTPRAKKVLELSLREALQLG 99
Score = 37.7 bits (86), Expect = 0.041, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 75 ETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGI 134
+ A IP ++ RA + ++ EA +L + GTE L+G++ EG A+ L G
Sbjct: 71 QQAPSGHIP-FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGA 129
Query: 135 TLFKVREETLNLL 147
L +VR++ + LL
Sbjct: 130 ELTRVRQQVIQLL 142
>sp|Q1XDF4|CLPC_PORYE ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra yezoensis GN=clpC PE=3 SV=1
Length = 821
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ +AI+ +A+ EAR+L + GTE L+G++ EGT A+ L++ + L R E
Sbjct: 4 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAQVLKSMNVNLKDARVEV 63
Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
++G+ F P T +A+R L+ + E + G
Sbjct: 64 EKIIGRGSGFV--AVEIPFTPRAKRVLELSLEEARQLG 99
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVR 140
+IP ++ RA R ++ EAR+L + GTE LMG++ EG A+ L + + +R
Sbjct: 77 EIP-FTPRAKRVLELSLEEARQLGHNYIGTEHLLMGLVREGEGVAARVLENLAVDVSSIR 135
Query: 141 EETLNLLGKS 150
E + +LG++
Sbjct: 136 AEVIQMLGEN 145
>sp|P51332|CLPC_PORPU ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra purpurea GN=clpC PE=3 SV=1
Length = 821
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ +AI+ +A+ EAR+L + GTE L+G++ EGT A+ L++ + L R E
Sbjct: 4 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAQVLKSMNVNLKDARVEV 63
Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
++G+ F P T +A+R L+ + E + G
Sbjct: 64 EKIIGRGSGFV--AVEIPFTPRAKRVLELSLEEARQLG 99
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVR 140
+IP ++ RA R ++ EAR+L + GTE LMG++ EG A+ L + + +R
Sbjct: 77 EIP-FTPRAKRVLELSLEEARQLGHNYIGTEHLLMGLVREGEGVAARVLENLAVDVSSIR 135
Query: 141 EETLNLLGKS 150
E + +LG++
Sbjct: 136 AEVIQMLGEN 145
>sp|P0A522|CLPC_MYCTU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1
Length = 848
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA R +A+ EAR L + GTE L+G++ EG AK L + GI+L VR +
Sbjct: 4 RFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQV 63
Query: 144 LNLLGKSDLFFFSPE-RPPLTEQAQRALDWAFNEKLKSG 181
++G+ +P P T +A++ L+ + E L+ G
Sbjct: 64 EEIIGQGQQ---APSGHIPFTPRAKKVLELSLREALQLG 99
Score = 37.7 bits (86), Expect = 0.041, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 75 ETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGI 134
+ A IP ++ RA + ++ EA +L + GTE L+G++ EG A+ L G
Sbjct: 71 QQAPSGHIP-FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGA 129
Query: 135 TLFKVREETLNLL 147
L +VR++ + LL
Sbjct: 130 ELTRVRQQVIQLL 142
>sp|P0A523|CLPC_MYCBO Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=clpC PE=3 SV=1
Length = 848
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA R +A+ EAR L + GTE L+G++ EG AK L + GI+L VR +
Sbjct: 4 RFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQV 63
Query: 144 LNLLGKSDLFFFSPE-RPPLTEQAQRALDWAFNEKLKSG 181
++G+ +P P T +A++ L+ + E L+ G
Sbjct: 64 EEIIGQGQQ---APSGHIPFTPRAKKVLELSLREALQLG 99
Score = 37.7 bits (86), Expect = 0.041, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 75 ETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGI 134
+ A IP ++ RA + ++ EA +L + GTE L+G++ EG A+ L G
Sbjct: 71 QQAPSGHIP-FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGA 129
Query: 135 TLFKVREETLNLL 147
L +VR++ + LL
Sbjct: 130 ELTRVRQQVIQLL 142
>sp|Q8EU05|CLPB_OCEIH Chaperone protein ClpB OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=clpB PE=3
SV=1
Length = 809
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 79 PDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFK 138
P + ++ RA + +++ EARKL + GTE L+G++ EG A+ L G++L K
Sbjct: 74 PTQSIHYTPRAKKVVELSQDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNK 133
Query: 139 VREETLNLLGKSD 151
R++ L LLG ++
Sbjct: 134 ARQQVLQLLGSNE 146
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA + A+++ EA +L + N GTE L+G++ EG AK L++ G+ + K++EE
Sbjct: 5 RFTERAQKVLALSQEEAVRLGHNNIGTEHILLGLVREGEGIAAKALQSLGLEVSKIQEEV 64
Query: 144 LNLLG----KSDLFFFSPERPPLTEQAQ 167
L+G + ++P + E +Q
Sbjct: 65 EKLIGVGKQPTQSIHYTPRAKKVVELSQ 92
>sp|Q53LY0|CLPC3_ORYSJ Chaperone protein ClpC3, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC3 PE=2 SV=1
Length = 932
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ +AI++ MA+ EAR+L + G+E L+G++ EGT AK LR G++L R E
Sbjct: 102 FTDKAIKAIMMAQEEARRLGHHAAGSEQLLLGVIGEGTGIGAKVLRGAGLSLKAARAEVE 161
Query: 145 NLLGK 149
+ G+
Sbjct: 162 KMAGR 166
>sp|P37571|CLPC_BACSU Negative regulator of genetic competence ClpC/MecB OS=Bacillus
subtilis (strain 168) GN=clpC PE=1 SV=1
Length = 810
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 11/102 (10%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA + A+A+ EA +L + N GTE L+G++ EG AK L+A G+ K+++E
Sbjct: 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEV 64
Query: 144 LNLLGK----SDLFFFSPERPPLTEQAQRALDWAFNEKLKSG 181
+L+G+ S ++P +A++ ++ + +E K G
Sbjct: 65 ESLIGRGQEMSQTIHYTP-------RAKKVIELSMDEARKLG 99
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ EG A+ L G++L K R++ L
Sbjct: 80 YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVL 139
Query: 145 NLLGKSD 151
LLG ++
Sbjct: 140 QLLGSNE 146
>sp|P49574|CLPC_ODOSI ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Odontella sinensis GN=clpC PE=3 SV=1
Length = 885
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
K++ AI+ +++ EAR++ + GTE L+GI+ + A+ L+ +TL K R E
Sbjct: 4 KFTEGAIKVIMLSQEEARRMGHNFVGTEQLLLGIIGQRHGIGARALKKQKVTLKKARREI 63
Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNE 176
+G+ F S P T +A+R L+ A +E
Sbjct: 64 ELYIGRGTGFVAS--EIPFTPRAKRVLEMAVHE 94
>sp|Q4L3I4|CLPC_STAHJ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC
PE=3 SV=1
Length = 824
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+ + RA R A A+ EA +L + N GTE L+G++ E AK L + IT KV EE
Sbjct: 5 RLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 144 LNLLG 148
L+G
Sbjct: 65 EKLIG 69
Score = 35.8 bits (81), Expect = 0.19, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ E A+ + + K R + +
Sbjct: 80 YTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVV 139
Query: 145 NLLGKSDL 152
LG ++
Sbjct: 140 KALGSPEM 147
>sp|Q8NXY8|CLPC_STAAW ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1
Length = 818
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+ + RA R A A+ EA +L + N GTE L+G++ E AK L + IT KV EE
Sbjct: 5 RLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 144 LNLLG 148
L+G
Sbjct: 65 EKLIG 69
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ E A+ + + K R + +
Sbjct: 80 YTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVV 139
Query: 145 NLLGKSDL 152
LG ++
Sbjct: 140 KALGNPEM 147
>sp|Q6GBW3|CLPC_STAAS ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3
SV=1
Length = 818
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+ + RA R A A+ EA +L + N GTE L+G++ E AK L + IT KV EE
Sbjct: 5 RLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 144 LNLLG 148
L+G
Sbjct: 65 EKLIG 69
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ E A+ + + K R + +
Sbjct: 80 YTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVV 139
Query: 145 NLLGKSDL 152
LG ++
Sbjct: 140 KALGNPEM 147
>sp|Q6GJE4|CLPC_STAAR ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3
SV=1
Length = 818
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+ + RA R A A+ EA +L + N GTE L+G++ E AK L + IT KV EE
Sbjct: 5 RLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 144 LNLLG 148
L+G
Sbjct: 65 EKLIG 69
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ E A+ + + K R + +
Sbjct: 80 YTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVV 139
Query: 145 NLLGKSDL 152
LG ++
Sbjct: 140 KALGNPEM 147
>sp|Q7A797|CLPC_STAAN ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1
Length = 818
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+ + RA R A A+ EA +L + N GTE L+G++ E AK L + IT KV EE
Sbjct: 5 RLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 144 LNLLG 148
L+G
Sbjct: 65 EKLIG 69
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ E A+ + + K R + +
Sbjct: 80 YTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVV 139
Query: 145 NLLGKSDL 152
LG ++
Sbjct: 140 KALGNPEM 147
>sp|Q99W78|CLPC_STAAM ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=clpC PE=1 SV=1
Length = 818
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+ + RA R A A+ EA +L + N GTE L+G++ E AK L + IT KV EE
Sbjct: 5 RLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 144 LNLLG 148
L+G
Sbjct: 65 EKLIG 69
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ E A+ + + K R + +
Sbjct: 80 YTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVV 139
Query: 145 NLLGKSDL 152
LG ++
Sbjct: 140 KALGNPEM 147
>sp|P0C281|CLPC_STAAC ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1
Length = 818
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+ + RA R A A+ EA +L + N GTE L+G++ E AK L + IT KV EE
Sbjct: 5 RLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 144 LNLLG 148
L+G
Sbjct: 65 EKLIG 69
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ E A+ + + K R + +
Sbjct: 80 YTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVV 139
Query: 145 NLLGKSDL 152
LG ++
Sbjct: 140 KALGNPEM 147
>sp|Q2G0P5|CLPC_STAA8 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1
SV=1
Length = 818
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+ + RA R A A+ EA +L + N GTE L+G++ E AK L + IT KV EE
Sbjct: 5 RLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 144 LNLLG 148
L+G
Sbjct: 65 EKLIG 69
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ E A+ + + K R + +
Sbjct: 80 YTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVV 139
Query: 145 NLLGKSDL 152
LG ++
Sbjct: 140 KALGNPEM 147
>sp|Q2FJB5|CLPC_STAA3 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3
SV=1
Length = 818
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+ + RA R A A+ EA +L + N GTE L+G++ E AK L + IT KV EE
Sbjct: 5 RLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 144 LNLLG 148
L+G
Sbjct: 65 EKLIG 69
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ E A+ + + K R + +
Sbjct: 80 YTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVV 139
Query: 145 NLLGKSDL 152
LG ++
Sbjct: 140 KALGNPEM 147
>sp|Q2YSD6|CLPC_STAAB ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=clpC PE=3 SV=1
Length = 818
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+ + RA R A A+ EA +L + N GTE L+G++ E AK L + IT KV EE
Sbjct: 5 RLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEV 64
Query: 144 LNLLG 148
L+G
Sbjct: 65 EKLIG 69
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ E A+ + + K R + +
Sbjct: 80 YTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVV 139
Query: 145 NLLGKSDL 152
LG ++
Sbjct: 140 KALGNPEM 147
>sp|Q8CQ88|CLPC_STAES ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=clpC PE=3 SV=1
Length = 817
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+ + RA R A A+ EA +L + N GTE L+G++ E AK L + IT KV EE
Sbjct: 5 RLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLVSFNITEDKVIEEV 64
Query: 144 LNLLG 148
L+G
Sbjct: 65 EKLIG 69
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ E A+ + + K R + +
Sbjct: 80 YTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVV 139
Query: 145 NLLGKSDLFFFSPERPPLTEQAQRA 169
LG SPE QA ++
Sbjct: 140 KALG-------SPEMSNKNAQANKS 157
>sp|Q5HRM8|CLPC_STAEQ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=clpC PE=3 SV=1
Length = 817
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+ + RA R A A+ EA +L + N GTE L+G++ E AK L + IT KV EE
Sbjct: 5 RLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLVSFNITEDKVIEEV 64
Query: 144 LNLLG 148
L+G
Sbjct: 65 EKLIG 69
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ E A+ + + K R + +
Sbjct: 80 YTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVV 139
Query: 145 NLLGKSDLFFFSPERPPLTEQAQRA 169
LG SPE QA ++
Sbjct: 140 KALG-------SPEMSNKNAQANKS 157
>sp|Q54316|HLYB_TREHY Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1
Length = 828
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 29 FLPSSSMFGNKLLIRPQLNSSRFVTKYHRS---SATATVSFSLPTTVKPETASPDKIPKW 85
L S ++L+R +++ R + + S+T V +LPT
Sbjct: 39 LLYESEALATRVLMRLKIDLDRLKLELESAMVKSSTTKVFGTLPT--------------- 83
Query: 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLN 145
+ R + + + EAR L + GTE L+G+L E + T L + G+ L +R+E L
Sbjct: 84 APRVQKLISRSAEEARALSHNYIGTEHLLLGLLREESGTAYNVLTSMGLELTILRQEILK 143
Query: 146 LLG 148
+LG
Sbjct: 144 MLG 146
>sp|Q49V34|CLPC_STAS1 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1
Length = 820
Score = 37.4 bits (85), Expect = 0.054, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+ + RA R A A+ EA +L + N GTE L+G++ E AK L IT KV EE
Sbjct: 5 RLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLETFEITEEKVVEEV 64
Query: 144 LNLLG 148
L+G
Sbjct: 65 EKLIG 69
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ E A+ + + K R + +
Sbjct: 80 YTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVV 139
Query: 145 NLLGKSDLFFFSPERPPLTEQAQRA 169
LG SPE QA ++
Sbjct: 140 KALG-------SPEMSNKNAQANKS 157
>sp|Q9Z8A6|CLPC_CHLPN Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2
Length = 845
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREE 142
P + R +SF A EA L++ GTE L+GIL + S + L I +VR+E
Sbjct: 79 PALTGRVKKSFESANEEASLLEHNYVGTEHLLLGILHQSDSVALQVLENLHIDPREVRKE 138
Query: 143 TLNLL 147
L L
Sbjct: 139 ILKEL 143
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
K++ RA + +A+ EA++L + GTE L+G+L G LR GI R+E
Sbjct: 4 KFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRNLGIDFDTARQEV 63
Query: 144 LNLLGKSDLFFFSPE-----RPPLTEQAQRALDWAFNE 176
L+G + PE P LT + +++ + A E
Sbjct: 64 ERLIG------YGPEIQVYGDPALTGRVKKSFESANEE 95
>sp|Q9PKA8|CLPC_CHLMU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia muridarum (strain MoPn / Nigg) GN=clpC PE=3
SV=1
Length = 870
Score = 34.7 bits (78), Expect = 0.42, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREE 142
P + R +SF A EA L++ GTE L+GIL + + L I ++R+E
Sbjct: 95 PALTGRVKKSFESANEEASILEHNYVGTEHLLLGILNQADGVALQVLENLHIDPKEIRKE 154
Query: 143 TLNLLGKSDLFFFSPERPPLTEQAQR 168
L +L F+ + PP + R
Sbjct: 155 ILK-----ELETFNLQLPPSSSITPR 175
>sp|A6T2Y3|CCA_JANMA Multifunctional CCA protein OS=Janthinobacterium sp. (strain
Marseille) GN=cca PE=3 SV=1
Length = 416
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 79 PDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFK 138
PD+ P+ + S + + +++LK PN + LM G A LRAN I
Sbjct: 262 PDQWPRHHGHEMHSVKLVDTVSKRLKIPNDCRDLALMTAREHGNVGRALELRANTI---- 317
Query: 139 VREETLNLLGKSDLF 153
+NLL + D F
Sbjct: 318 -----VNLLERCDAF 327
>sp|O84288|CLPC_CHLTR Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=clpC PE=3
SV=1
Length = 854
Score = 33.1 bits (74), Expect = 0.94, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREE 142
P + R +SF A EA L++ GTE L+GIL + + L + ++R+E
Sbjct: 79 PALTGRVKKSFESANEEAALLEHNYVGTEHLLLGILNQSDGVALQVLENLHVDPKEIRKE 138
Query: 143 TLNLLGKSDLFFFSPERPPLTEQAQR 168
L +L F+ + PP + R
Sbjct: 139 ILK-----ELETFNLQLPPSSSITPR 159
>sp|B8A5G9|TRM5_DANRE tRNA (guanine(37)-N1)-methyltransferase OS=Danio rerio GN=trmt5
PE=2 SV=1
Length = 480
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 78 SPDKIPKWSARAIRSFAM-AELEARKLK--YPNTGTEAFLMGILVEGTSTTAKFLRANGI 134
S D A A++++++ E+++ +LK Y N +E L +L EG T+ F R I
Sbjct: 131 SSDSFGSDEAEALKAYSVPQEIQSYELKLTYENFKSEEILRAVLPEGQGVTSGFSRVGHI 190
Query: 135 TLFKVREETL 144
+RE L
Sbjct: 191 AHMNLREHQL 200
>sp|Q9K451|COX1B_STRCO Putative cytochrome c oxidase subunit 1-beta OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=ctaD2
PE=3 SV=1
Length = 573
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAK---------FLRANGITL 136
A + FA A L + P G + + MG++V G STT LRA G+T+
Sbjct: 159 GAASFGWFAYAPLNSATFS-PGPGGDLWTMGLVVSGVSTTLSAVNFISTIICLRAPGMTM 217
Query: 137 FKVREETLNLLGKSDLFFFSPERPPLT 163
F++ T N+L S L P P LT
Sbjct: 218 FRMPIFTWNILFTSILVL--PAFPVLT 242
>sp|Q8G4X4|CLPB_BIFLO Chaperone protein ClpB OS=Bifidobacterium longum (strain NCC 2705)
GN=clpB PE=3 SV=1
Length = 889
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 59 SATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGIL 118
+A +LP+ T+ P + +A + A AE E +++ TE L+GI
Sbjct: 61 AAVRNALVALPSASGSSTSQPQASRQLTA----AIAQAEKEMQQMGDEYVSTEHLLIGIA 116
Query: 119 VEGTSTTAKFLRANGITLFKVRE 141
+ +A+ L NG+T +R+
Sbjct: 117 ASKPNQSAEILEKNGVTAASLRK 139
>sp|A1A4R8|CDC23_BOVIN Cell division cycle protein 23 homolog OS=Bos taurus GN=CDC23
PE=2 SV=1
Length = 597
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 21 AKRSSAPSFLPSSSMFGNKLLIRPQLNSSRFVTK----YHRSSATATVSFSLPTTVKPET 76
A +S+ LPSS F N I+ QL +T+ H S +A ++FSLP E
Sbjct: 11 APTASSVPVLPSSCDFSNLREIKKQLLLIAGLTRERGLLHSSKWSAELAFSLPALPLSEL 70
Query: 77 ASPDKIPKWSARAIRSFAMAE 97
P I + A+ + ++ +A+
Sbjct: 71 QPPPPITEEDAQDMDAYTLAK 91
>sp|P14714|PHYC_ARATH Phytochrome C OS=Arabidopsis thaliana GN=PHYC PE=1 SV=1
Length = 1111
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 75 ETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGI 134
E SPD++P +A A+RS+ +A +L+ +G L LV+ S + R +
Sbjct: 178 EPVSPDEVPVTAAGALRSYKLAAKSISRLQALPSGNMLLLCDALVKEVSELTGYDR---V 234
Query: 135 TLFKVREE 142
++K E+
Sbjct: 235 MVYKFHED 242
>sp|P42762|CLPD_ARATH Chaperone protein ClpD, chloroplastic OS=Arabidopsis thaliana
GN=CLPD PE=1 SV=1
Length = 945
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVRE 141
+++ RAIR+ ++ EA+ L T+ L+G++ E FL +GIT+ K RE
Sbjct: 82 RFTERAIRAIIFSQKEAKSLGKDMVYTQHLLLGLIAEDRDPQG-FL-GSGITIDKARE 137
>sp|P63288|CLPB_MYCTU Chaperone protein ClpB OS=Mycobacterium tuberculosis GN=clpB PE=3
SV=1
Length = 848
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 74 PETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANG 133
P+ P+ S ++ + A+ A +L TE ++G L G S AK L +G
Sbjct: 72 PQATGASTQPQLSRESLAAITTAQQLATELDDEYVSTEHVMVG-LATGDSDVAKLLTGHG 130
Query: 134 ITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGSL 183
+ +RE + + G + + SPE P T QA + + + G L
Sbjct: 131 ASPQALREAFVKVRGSARV--TSPE-PEATYQALQKYSTDLTARAREGKL 177
>sp|P63287|CLPB_MYCBO Chaperone protein ClpB OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=clpB PE=3 SV=1
Length = 848
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 74 PETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANG 133
P+ P+ S ++ + A+ A +L TE ++G L G S AK L +G
Sbjct: 72 PQATGASTQPQLSRESLAAITTAQQLATELDDEYVSTEHVMVG-LATGDSDVAKLLTGHG 130
Query: 134 ITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGSL 183
+ +RE + + G + + SPE P T QA + + + G L
Sbjct: 131 ASPQALREAFVKVRGSARV--TSPE-PEATYQALQKYSTDLTARAREGKL 177
>sp|O81973|C93A3_SOYBN Cytochrome P450 93A3 OS=Glycine max GN=CYP93A3 PE=2 SV=1
Length = 510
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 93 FAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLR-------ANGITLFKVREETLN 145
F ++E E+ ++K +AF++ IL+ GT T+A + N L K R+E
Sbjct: 280 FDISEDESSEIKLNKENIKAFILDILIAGTDTSAVTMEWAMAELINNPGVLEKARQEMDA 339
Query: 146 LLGKS 150
++GKS
Sbjct: 340 VVGKS 344
>sp|Q73T66|CLPB_MYCPA Chaperone protein ClpB OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=clpB PE=3 SV=1
Length = 848
Score = 30.4 bits (67), Expect = 7.4, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 74 PETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANG 133
P+ + P+ S ++ + A+ A +L TE ++G L G S AK L +G
Sbjct: 72 PQASGASSQPQLSRESLAAITTAQHLATELDDEYVSTEHLMVG-LATGDSDVAKLLTGHG 130
Query: 134 ITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGSL 183
+ +RE + + G + + SP+ P T QA + + G L
Sbjct: 131 ASPQALREAFVKVRGSARV--TSPD-PEATYQALEKYSTDLTARAREGKL 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.129 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,195,289
Number of Sequences: 539616
Number of extensions: 2296775
Number of successful extensions: 6151
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6067
Number of HSP's gapped (non-prelim): 101
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)