Query 029953
Match_columns 185
No_of_seqs 157 out of 1092
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:41:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fh2_A Probable ATP-dependent 99.8 1.8E-20 6.2E-25 144.1 14.3 103 81-185 3-105 (146)
2 1khy_A CLPB protein; alpha hel 99.8 3.8E-20 1.3E-24 141.5 12.7 104 82-185 3-106 (148)
3 3fes_A ATP-dependent CLP endop 99.8 5.1E-20 1.8E-24 141.6 12.6 101 82-185 5-105 (145)
4 3zri_A CLPB protein, CLPV; cha 99.8 4.9E-20 1.7E-24 146.5 11.7 102 81-185 21-123 (171)
5 2y1q_A CLPC N-domain, negative 99.8 1.3E-19 4.4E-24 139.0 12.0 101 82-185 3-103 (150)
6 1k6k_A ATP-dependent CLP prote 99.7 7.3E-18 2.5E-22 128.2 8.9 99 85-185 2-103 (143)
7 3pxg_A Negative regulator of g 99.7 4.3E-17 1.5E-21 146.5 11.2 102 81-185 2-103 (468)
8 3pxi_A Negative regulator of g 99.7 3.1E-16 1.1E-20 147.7 11.2 102 81-185 2-103 (758)
9 1qvr_A CLPB protein; coiled co 99.6 1.9E-15 6.6E-20 144.3 10.7 104 82-185 3-106 (854)
10 1r6b_X CLPA protein; AAA+, N-t 99.5 8.4E-14 2.9E-18 130.8 10.1 99 85-185 2-103 (758)
11 3fh2_A Probable ATP-dependent 99.3 1.7E-11 5.7E-16 93.8 10.6 66 83-148 80-145 (146)
12 3fes_A ATP-dependent CLP endop 99.2 2.2E-11 7.6E-16 93.1 8.7 66 83-148 80-145 (145)
13 2y1q_A CLPC N-domain, negative 99.2 1.5E-10 5E-15 88.2 9.7 68 83-150 78-145 (150)
14 1khy_A CLPB protein; alpha hel 99.1 3.1E-10 1.1E-14 86.1 8.7 81 62-148 65-145 (148)
15 1k6k_A ATP-dependent CLP prote 99.1 5.8E-10 2E-14 84.2 8.8 62 83-144 78-139 (143)
16 3pxg_A Negative regulator of g 98.8 1.1E-08 3.9E-13 91.6 7.8 67 83-149 78-144 (468)
17 3pxi_A Negative regulator of g 98.7 3.4E-08 1.2E-12 93.0 7.8 68 83-150 78-145 (758)
18 1r6b_X CLPA protein; AAA+, N-t 98.4 9.6E-07 3.3E-11 82.8 9.9 64 83-146 78-141 (758)
19 3zri_A CLPB protein, CLPV; cha 98.3 1.9E-06 6.5E-11 67.9 7.9 67 83-149 97-166 (171)
20 1qvr_A CLPB protein; coiled co 97.3 0.00024 8.4E-09 67.7 6.3 73 62-148 65-137 (854)
21 2f8n_G Core histone macro-H2A. 84.3 0.95 3.2E-05 33.3 3.8 40 89-130 57-96 (120)
22 2nqb_C Histone H2A; nucleosome 83.0 1.2 4E-05 33.0 3.8 40 89-130 58-97 (123)
23 1f66_C Histone H2A.Z; nucleoso 82.2 1.2 4.1E-05 33.2 3.6 39 89-129 63-101 (128)
24 1tzy_A Histone H2A-IV; histone 82.1 1.5 5.1E-05 32.7 4.1 40 89-130 60-99 (129)
25 1id3_C Histone H2A.1; nucleoso 81.8 1.6 5.3E-05 32.6 4.1 40 89-130 60-99 (131)
26 2f8n_K Histone H2A type 1; nuc 79.0 2.1 7.3E-05 32.7 4.1 40 89-130 79-118 (149)
27 2jss_A Chimera of histone H2B. 76.9 3.7 0.00013 32.4 5.1 39 89-129 141-179 (192)
28 1tzy_D Histone H4-VI; histone- 73.1 4.2 0.00014 28.8 4.1 37 84-120 58-94 (103)
29 2yfw_B Histone H4, H4; cell cy 72.2 4.5 0.00016 28.6 4.1 37 84-120 58-94 (103)
30 1ku5_A HPHA, archaeal histon; 57.9 11 0.00038 24.4 3.6 33 85-117 36-68 (70)
31 3b0b_C CENP-X, centromere prot 55.0 11 0.00038 25.7 3.3 32 84-115 40-71 (81)
32 3b0c_W CENP-W, centromere prot 48.5 27 0.00092 23.0 4.4 32 86-117 36-67 (76)
33 4dra_E Centromere protein X; D 47.3 22 0.00077 24.3 3.9 30 86-115 46-75 (84)
34 1b67_A Protein (histone HMFA); 46.8 23 0.0008 22.5 3.8 27 91-117 38-64 (68)
35 1f1e_A Histone fold protein; a 46.7 22 0.00075 27.1 4.1 36 84-119 111-146 (154)
36 3kw6_A 26S protease regulatory 46.6 28 0.00097 22.4 4.3 33 86-118 39-71 (78)
37 1taf_B TFIID TBP associated fa 44.3 41 0.0014 22.1 4.7 34 84-117 35-68 (70)
38 1id3_B Histone H4; nucleosome 44.0 28 0.00097 24.4 4.1 37 84-120 57-93 (102)
39 2hue_C Histone H4; mini beta s 43.5 27 0.00092 23.5 3.8 36 84-119 39-74 (84)
40 4g92_C HAPE; transcription fac 42.6 27 0.00092 25.2 3.9 32 90-121 77-108 (119)
41 3fm5_A Transcriptional regulat 41.9 87 0.003 21.9 8.9 70 110-179 41-117 (150)
42 1taf_A TFIID TBP associated fa 41.1 46 0.0016 21.7 4.5 36 83-118 29-64 (68)
43 1n1j_B NF-YC; histone-like PAI 39.5 34 0.0012 23.6 3.9 32 90-121 55-86 (97)
44 1bja_A Transcription regulator 38.0 57 0.002 22.7 4.9 63 112-175 20-83 (95)
45 1jfi_A Transcription regulator 36.5 20 0.00067 25.0 2.2 32 90-121 47-78 (98)
46 2dzn_B 26S protease regulatory 34.0 58 0.002 21.1 4.3 35 86-120 34-68 (82)
47 3b0c_T CENP-T, centromere prot 32.2 55 0.0019 23.2 4.1 37 85-121 37-73 (111)
48 3vlf_B 26S protease regulatory 31.7 78 0.0027 20.9 4.7 34 86-119 37-70 (88)
49 3f3x_A Transcriptional regulat 31.6 1.3E+02 0.0043 20.7 6.6 68 111-179 40-113 (144)
50 3hsr_A HTH-type transcriptiona 30.1 1.4E+02 0.0046 20.6 6.9 72 108-179 34-113 (140)
51 3ksy_A SOS-1, SON of sevenless 30.1 56 0.0019 31.8 5.0 32 90-121 139-170 (1049)
52 1n1j_A NF-YB; histone-like PAI 28.7 86 0.0029 21.2 4.5 35 84-118 27-73 (93)
53 1qbj_A Protein (double-strande 28.4 1E+02 0.0035 20.3 4.8 28 123-150 28-55 (81)
54 4aik_A Transcriptional regulat 26.6 1.7E+02 0.0059 20.8 6.2 74 106-179 27-109 (151)
55 3cjn_A Transcriptional regulat 25.8 1.7E+02 0.0059 20.4 6.2 68 111-178 55-128 (162)
56 3g3z_A NMB1585, transcriptiona 25.1 1.7E+02 0.0058 20.1 9.6 69 110-178 33-107 (145)
57 1xn7_A Hypothetical protein YH 25.0 1.4E+02 0.0049 19.5 5.0 39 111-149 5-43 (78)
58 1jfi_B DR1 protein, transcript 24.8 1.1E+02 0.0036 23.8 4.8 37 84-120 33-81 (179)
59 2krk_A 26S protease regulatory 24.6 1E+02 0.0035 20.3 4.3 33 86-118 47-79 (86)
60 1jgs_A Multiple antibiotic res 24.2 1.7E+02 0.0058 19.8 8.6 67 111-177 37-109 (138)
61 3aji_B S6C, proteasome (prosom 23.9 73 0.0025 20.5 3.3 35 86-120 37-71 (83)
62 3k0l_A Repressor protein; heli 23.8 1.9E+02 0.0067 20.3 7.9 69 110-178 48-122 (162)
63 3e6m_A MARR family transcripti 23.8 1.9E+02 0.0066 20.3 8.3 69 110-178 55-129 (161)
64 1fnn_A CDC6P, cell division co 23.5 1.9E+02 0.0063 23.3 6.5 59 87-145 241-299 (389)
65 2lnb_A Z-DNA-binding protein 1 23.4 97 0.0033 21.0 3.8 30 124-153 36-65 (80)
66 2fxa_A Protease production reg 23.1 2.1E+02 0.0072 21.6 6.4 74 104-177 42-123 (207)
67 3s2w_A Transcriptional regulat 23.1 2E+02 0.0068 20.2 8.7 71 108-178 50-126 (159)
68 2k02_A Ferrous iron transport 22.8 1.8E+02 0.0062 19.6 5.3 39 113-151 7-45 (87)
69 3kzq_A Putative uncharacterize 22.4 2.4E+02 0.0082 20.9 7.2 20 124-143 127-146 (208)
70 1f1e_A Histone fold protein; a 22.4 86 0.0029 23.7 3.8 34 84-117 34-67 (154)
71 2h09_A Transcriptional regulat 22.4 2E+02 0.0069 20.2 5.9 55 121-175 53-107 (155)
72 3nrv_A Putative transcriptiona 22.2 2E+02 0.0067 19.8 6.6 66 112-177 44-115 (148)
73 2ly8_A Budding yeast chaperone 21.3 1.5E+02 0.0051 21.5 4.8 37 84-120 76-112 (121)
74 3oop_A LIN2960 protein; protei 20.8 2.1E+02 0.0071 19.5 8.3 74 105-178 32-113 (143)
75 2rdp_A Putative transcriptiona 20.8 2.1E+02 0.0072 19.6 8.1 73 105-177 37-117 (150)
76 2fa5_A Transcriptional regulat 20.8 2.2E+02 0.0075 19.8 9.1 69 110-178 51-125 (162)
77 1xmk_A Double-stranded RNA-spe 20.7 1.1E+02 0.0038 20.3 3.7 39 112-150 15-54 (79)
78 3cdh_A Transcriptional regulat 20.3 2.2E+02 0.0076 19.7 9.6 67 112-178 47-119 (155)
79 3tl8_B Effector protein hopab2 20.2 2.4E+02 0.0084 20.1 6.0 24 125-148 43-66 (117)
No 1
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.85 E-value=1.8e-20 Score=144.11 Aligned_cols=103 Identities=32% Similarity=0.490 Sum_probs=96.8
Q ss_pred CchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 029953 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP 160 (185)
Q Consensus 81 m~~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~~~~~~i 160 (185)
|+++||++++++|..|+++|++++|++|++||||+||+.++++.+.++|+++|+|.+.+++.++..+++.|.. .+..+
T Consensus 3 m~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~~~~~~--~~~~~ 80 (146)
T 3fh2_A 3 MFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQP--TTGHI 80 (146)
T ss_dssp GGGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHCCCSCC--CCSCC
T ss_pred hhhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhccCCCC--CcCCC
Confidence 6789999999999999999999999999999999999999889999999999999999999999999988753 23568
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCC
Q 029953 161 PLTEQAQRALDWAFNEKLKSGSLCI 185 (185)
Q Consensus 161 ~~s~~a~~~Le~A~~~A~~lGd~yI 185 (185)
++|+.++++|+.|+.+|+++||+||
T Consensus 81 ~~s~~~~~vL~~A~~~a~~~~~~~i 105 (146)
T 3fh2_A 81 PFTPRAKKVLELSLREGLQMGHKYI 105 (146)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSSB
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCcC
Confidence 9999999999999999999999997
No 2
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.83 E-value=3.8e-20 Score=141.45 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=92.8
Q ss_pred chhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 029953 82 IPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPP 161 (185)
Q Consensus 82 ~~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~~~~~~i~ 161 (185)
+++||++++++|..|+++|++++|.+|++||||+||+.++++.+..+|+++|+|.+.+++.++..+++.|...+.+..++
T Consensus 3 ~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~p~~~~~~~~~~ 82 (148)
T 1khy_A 3 LDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQ 82 (148)
T ss_dssp -CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHHTTSCCC-------C
T ss_pred hhhhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCcC
Confidence 56899999999999999999999999999999999999998999999999999999999999999998886543224689
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCC
Q 029953 162 LTEQAQRALDWAFNEKLKSGSLCI 185 (185)
Q Consensus 162 ~s~~a~~~Le~A~~~A~~lGd~yI 185 (185)
+|+.++++|+.|+.+|..+||+||
T Consensus 83 ~s~~~~~vl~~A~~~a~~~~~~~i 106 (148)
T 1khy_A 83 PSQDLVRVLNLCDKLAQKRGDNFI 106 (148)
T ss_dssp BCHHHHHHHHHHHHHHHHHTCSSB
T ss_pred cCHHHHHHHHHHHHHHHHcCCCee
Confidence 999999999999999999999997
No 3
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.83 E-value=5.1e-20 Score=141.58 Aligned_cols=101 Identities=23% Similarity=0.271 Sum_probs=95.4
Q ss_pred chhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 029953 82 IPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPP 161 (185)
Q Consensus 82 ~~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~~~~~~i~ 161 (185)
+++||++++++|..|+++|++++|++|++||||+||+.++++.+.++|+++|||.+.+++.++..+++.|. . +..++
T Consensus 5 ~~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~-~--~~~~~ 81 (145)
T 3fes_A 5 FNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDMEGKGEE-I--SEDIV 81 (145)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHCCCSC-C--CSCCE
T ss_pred ccccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHHhcCCC-C--CCCCC
Confidence 56899999999999999999999999999999999999988999999999999999999999999998876 2 35689
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCC
Q 029953 162 LTEQAQRALDWAFNEKLKSGSLCI 185 (185)
Q Consensus 162 ~s~~a~~~Le~A~~~A~~lGd~yI 185 (185)
+|+.++++|+.|+.+|+++||+||
T Consensus 82 ~s~~~~~vl~~A~~~A~~~~~~~v 105 (145)
T 3fes_A 82 LSPRSKQILELSGMFANKLKTNYI 105 (145)
T ss_dssp ECHHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999999999999997
No 4
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.82 E-value=4.9e-20 Score=146.54 Aligned_cols=102 Identities=15% Similarity=0.102 Sum_probs=95.5
Q ss_pred CchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 029953 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP 160 (185)
Q Consensus 81 m~~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~~~~~~i 160 (185)
|+++||++++++|..|+++|++++|++|++||||+||++++++.+.++|+++|||.+.+++.++ .+++.|... ...+
T Consensus 21 ~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l~~~p~~~--~~~~ 97 (171)
T 3zri_A 21 LIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-STYSREQVL--DTYP 97 (171)
T ss_dssp HHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HHSCCCCCC--SSCC
T ss_pred HHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HHhcCCCCC--CCCC
Confidence 4689999999999999999999999999999999999999899999999999999999999999 998877542 3568
Q ss_pred CCCHHHHHHHHHHHHHHH-HcCCCCC
Q 029953 161 PLTEQAQRALDWAFNEKL-KSGSLCI 185 (185)
Q Consensus 161 ~~s~~a~~~Le~A~~~A~-~lGd~yI 185 (185)
++|+.++++|+.|+.+|+ ++||+||
T Consensus 98 ~~S~~l~~vL~~A~~~A~l~~gd~~I 123 (171)
T 3zri_A 98 AFSPLLVELLQEAWLLSSTELEQAEL 123 (171)
T ss_dssp EECHHHHHHHHHHHHHHHTTTCCSSB
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCEE
Confidence 999999999999999999 9999997
No 5
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.81 E-value=1.3e-19 Score=139.00 Aligned_cols=101 Identities=29% Similarity=0.442 Sum_probs=92.1
Q ss_pred chhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 029953 82 IPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPP 161 (185)
Q Consensus 82 ~~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~~~~~~i~ 161 (185)
+++||++++++|..|+++|.+++|++|++||||+||++++++.+..+|+++|+|.+.+++.++..+++.|... ..++
T Consensus 3 ~~~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~~~~---~~~~ 79 (150)
T 2y1q_A 3 FGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRAQEMS---QTIH 79 (150)
T ss_dssp -CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHHCCC--------CCE
T ss_pred chhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhccCCccc---ccCC
Confidence 5789999999999999999999999999999999999999899999999999999999999999999887542 4689
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCC
Q 029953 162 LTEQAQRALDWAFNEKLKSGSLCI 185 (185)
Q Consensus 162 ~s~~a~~~Le~A~~~A~~lGd~yI 185 (185)
+|+.++++|+.|+.+|.++||+||
T Consensus 80 ~s~~~~~vL~~A~~~A~~~~~~~i 103 (150)
T 2y1q_A 80 YTPRAKKVIELSMDEARKLGHSYV 103 (150)
T ss_dssp ECHHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCHHHHHHHHHHHHHHHHcCCCee
Confidence 999999999999999999999997
No 6
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.73 E-value=7.3e-18 Score=128.18 Aligned_cols=99 Identities=20% Similarity=0.172 Sum_probs=89.2
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCC-CCCC-CC-CCCCC
Q 029953 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKS-DLFF-FS-PERPP 161 (185)
Q Consensus 85 fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~-~~~~-~~-~~~i~ 161 (185)
||++++++|..|+++|+++||++|++||||+||+.++ .+.++|+++|+|.+.+++.++..+++. |... +. ...++
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~--~~~~iL~~~g~~~~~l~~~l~~~l~~~~p~~~~~~~~~~~~ 79 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCH--HHHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCSSCSCCSCE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCc--hHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 8999999999999999999999999999999999875 389999999999999999999998765 6443 11 24689
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCC
Q 029953 162 LTEQAQRALDWAFNEKLKSGSLCI 185 (185)
Q Consensus 162 ~s~~a~~~Le~A~~~A~~lGd~yI 185 (185)
+|+.++++|+.|+.+|.++||+||
T Consensus 80 ~s~~~~~~l~~A~~~A~~~~~~~i 103 (143)
T 1k6k_A 80 PTLSFQRVLQRAVFHVQSSGRNEV 103 (143)
T ss_dssp ECHHHHHHHHHHHHHHHSSSCSCB
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999999999999997
No 7
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.70 E-value=4.3e-17 Score=146.48 Aligned_cols=102 Identities=28% Similarity=0.441 Sum_probs=94.8
Q ss_pred CchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 029953 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP 160 (185)
Q Consensus 81 m~~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~~~~~~i 160 (185)
|+.+||++++++|..|+++|++++|.+|++||||+||+.++++.+.++|+.+|+|.+.+++.++..++..+.. ...+
T Consensus 2 m~~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~---~~~~ 78 (468)
T 3pxg_A 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM---SQTI 78 (468)
T ss_dssp -CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTT---CSSC
T ss_pred cchhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhcccCCC---CCCC
Confidence 5789999999999999999999999999999999999999889999999999999999999999998877643 2358
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCC
Q 029953 161 PLTEQAQRALDWAFNEKLKSGSLCI 185 (185)
Q Consensus 161 ~~s~~a~~~Le~A~~~A~~lGd~yI 185 (185)
++|+.++++|+.|+.+|.++||+||
T Consensus 79 ~~S~~~~~vL~~A~~~A~~~g~~~I 103 (468)
T 3pxg_A 79 HYTPRAKKVIELSMDEARKLGHSYV 103 (468)
T ss_dssp EECHHHHHHHHHHHHHHHTTTCSSB
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCee
Confidence 9999999999999999999999997
No 8
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.66 E-value=3.1e-16 Score=147.73 Aligned_cols=102 Identities=28% Similarity=0.441 Sum_probs=95.2
Q ss_pred CchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 029953 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP 160 (185)
Q Consensus 81 m~~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~~~~~~i 160 (185)
|+++||++++++|..|+++|++++|.+|++||||+||+.++++.+.++|+++|+|.+.+++.++..++..+.. +..+
T Consensus 2 m~~~~t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~---~~~~ 78 (758)
T 3pxi_A 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM---SQTI 78 (758)
T ss_dssp -CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTT---CSSC
T ss_pred chhhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCCC---CCCC
Confidence 5789999999999999999999999999999999999999889999999999999999999999999887754 2468
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCC
Q 029953 161 PLTEQAQRALDWAFNEKLKSGSLCI 185 (185)
Q Consensus 161 ~~s~~a~~~Le~A~~~A~~lGd~yI 185 (185)
++|+.++++|+.|+.+|.++||+||
T Consensus 79 ~~s~~~~~vl~~A~~~A~~~~~~~I 103 (758)
T 3pxi_A 79 HYTPRAKKVIELSMDEARKLGHSYV 103 (758)
T ss_dssp EECHHHHHHHHHHHHHHHTTTCSSB
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcc
Confidence 9999999999999999999999997
No 9
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.60 E-value=1.9e-15 Score=144.28 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=95.8
Q ss_pred chhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 029953 82 IPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPP 161 (185)
Q Consensus 82 ~~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~~~~~~i~ 161 (185)
+++||++++++|..|+++|++++|.+|++||||+||+.++++.+..+|+++|+|.+.+++.++..+++.+...+....++
T Consensus 3 ~~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~~~~~~~~~~ 82 (854)
T 1qvr_A 3 LERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVGQY 82 (854)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCCCCGGGTTCE
T ss_pred hhhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCCCCCC
Confidence 56899999999999999999999999999999999999998999999999999999999999999988776543234689
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCC
Q 029953 162 LTEQAQRALDWAFNEKLKSGSLCI 185 (185)
Q Consensus 162 ~s~~a~~~Le~A~~~A~~lGd~yI 185 (185)
+|+.++++|+.|+.+|..+|++||
T Consensus 83 ~S~~~~~vL~~A~~~a~~~g~~~I 106 (854)
T 1qvr_A 83 LTSRLSGALNRAEGLMEELKDRYV 106 (854)
T ss_dssp ECHHHHHHHHHHHHHHHTTTCSSC
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEe
Confidence 999999999999999999999997
No 10
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.48 E-value=8.4e-14 Score=130.79 Aligned_cols=99 Identities=20% Similarity=0.174 Sum_probs=88.8
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCCC--CCCCCC
Q 029953 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGK-SDLFFF--SPERPP 161 (185)
Q Consensus 85 fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~-~~~~~~--~~~~i~ 161 (185)
||++++++|..|+++|++++|.+|++||||+||+.++ .+..+|+++|+|.+.+++.++..++. .+...+ ....++
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~--~~~~iL~~~gvd~~~l~~~l~~~l~~~~p~~~~~~~~~~~~ 79 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSH--HHHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCCSSSCCCCE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCc--HHHHHHHHcCCCHHHHHHHHHHHHhccCCCCCCccccCCCC
Confidence 8999999999999999999999999999999999863 58999999999999999999999876 554322 124689
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCC
Q 029953 162 LTEQAQRALDWAFNEKLKSGSLCI 185 (185)
Q Consensus 162 ~s~~a~~~Le~A~~~A~~lGd~yI 185 (185)
+|+.++++|+.|+.+|..+|++||
T Consensus 80 ~s~~~~~vl~~A~~~a~~~~~~~I 103 (758)
T 1r6b_X 80 PTLSFQRVLQRAVFHVQSSGRNEV 103 (758)
T ss_dssp ECHHHHHHHHHHHHHHHHHTCSSB
T ss_pred cCHHHHHHHHHHHHHHHHcCCCEe
Confidence 999999999999999999999997
No 11
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.30 E-value=1.7e-11 Score=93.77 Aligned_cols=66 Identities=27% Similarity=0.432 Sum_probs=62.8
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhc
Q 029953 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLG 148 (185)
Q Consensus 83 ~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~ 148 (185)
..+|+.+.++|..|..+|+++|+.+|++||||+||++++++.+.++|+++|||.++++++|...++
T Consensus 80 ~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~l~~~~g 145 (146)
T 3fh2_A 80 IPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLS 145 (146)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 369999999999999999999999999999999999988889999999999999999999998875
No 12
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.24 E-value=2.2e-11 Score=93.08 Aligned_cols=66 Identities=27% Similarity=0.394 Sum_probs=61.8
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhc
Q 029953 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLG 148 (185)
Q Consensus 83 ~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~ 148 (185)
..||+.++++|..|..+|+++|+.+|++||||+||+.++++.+.++|+++||+.++++++|...++
T Consensus 80 ~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~ 145 (145)
T 3fes_A 80 IVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDMMG 145 (145)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 379999999999999999999999999999999999998888999999999999999999987653
No 13
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.17 E-value=1.5e-10 Score=88.20 Aligned_cols=68 Identities=35% Similarity=0.563 Sum_probs=63.3
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCC
Q 029953 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKS 150 (185)
Q Consensus 83 ~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~ 150 (185)
..||+.+.++|..|..+|+.+|+.+|++||||+||+.++++.+.++|+++||+.+.+++.+...++..
T Consensus 78 ~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~g~~ 145 (150)
T 2y1q_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGNN 145 (150)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHCCC
Confidence 37999999999999999999999999999999999988777778999999999999999999988654
No 14
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.10 E-value=3.1e-10 Score=86.09 Aligned_cols=81 Identities=20% Similarity=0.187 Sum_probs=63.7
Q ss_pred hHhhhcCCCcCCCCCCCCCCchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHH
Q 029953 62 ATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVRE 141 (185)
Q Consensus 62 ~~~l~~~P~~~~p~~~~~~m~~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~ 141 (185)
+..+.+.|++.++. + ...||+.+.++|..|..+|+.+++.+|++||||+||++ +++.+..+|+.+||+.+.+++
T Consensus 65 ~~~l~~~p~~~~~~---~--~~~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall~-~~~~~~~~L~~~gi~~~~l~~ 138 (148)
T 1khy_A 65 NQALNRLPQVEGTG---G--DVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALE-SRGTLADILKAAGATTANITQ 138 (148)
T ss_dssp HHHHTTSCCC------------CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHT-SCHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHhCCCCCCCC---C--CcCcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHc-CCcHHHHHHHHcCCCHHHHHH
Confidence 44566778754321 1 23689999999999999999999999999999999994 457789999999999999999
Q ss_pred HHHHHhc
Q 029953 142 ETLNLLG 148 (185)
Q Consensus 142 ~I~~~l~ 148 (185)
.+...++
T Consensus 139 ~l~~~rg 145 (148)
T 1khy_A 139 AIEQMRG 145 (148)
T ss_dssp HHHC---
T ss_pred HHHHHHC
Confidence 9887664
No 15
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.06 E-value=5.8e-10 Score=84.20 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=58.1
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHH
Q 029953 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144 (185)
Q Consensus 83 ~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~ 144 (185)
..||+.+.++|..|..+|+.+|+.+|++||||+||+.++++.+.++|+++||+.+.+++.+.
T Consensus 78 ~~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 78 TQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFIS 139 (143)
T ss_dssp CEECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 37999999999999999999999999999999999998777789999999999999998775
No 16
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.78 E-value=1.1e-08 Score=91.58 Aligned_cols=67 Identities=36% Similarity=0.564 Sum_probs=63.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcC
Q 029953 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGK 149 (185)
Q Consensus 83 ~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~ 149 (185)
..||++++++|..|..+|+++|+.+|++||||+||+.++++.+.++|+++||+.+++++.+...++.
T Consensus 78 ~~~S~~~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~~ 144 (468)
T 3pxg_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGS 144 (468)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHHHHHhcc
Confidence 3699999999999999999999999999999999999988899999999999999999999877753
No 17
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.67 E-value=3.4e-08 Score=92.96 Aligned_cols=68 Identities=35% Similarity=0.560 Sum_probs=63.7
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCC
Q 029953 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKS 150 (185)
Q Consensus 83 ~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~ 150 (185)
..||++++++|..|..+|+++|+.+|++||||+||+.++++.+.++|+++||+.+++++.+...++..
T Consensus 78 ~~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~~~~~~~ 145 (758)
T 3pxi_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSN 145 (758)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCCcHHHHHHHHcCCCHHHHHHHHHHHhcCC
Confidence 37999999999999999999999999999999999999888999999999999999999998877643
No 18
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.40 E-value=9.6e-07 Score=82.81 Aligned_cols=64 Identities=16% Similarity=0.097 Sum_probs=59.5
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHH
Q 029953 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNL 146 (185)
Q Consensus 83 ~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~ 146 (185)
..||+.++++|..|..+|+.+|+.+|++||||+||+.++++.+..+|+++||+.+++.+.+...
T Consensus 78 ~~~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~ 141 (758)
T 1r6b_X 78 TQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHG 141 (758)
T ss_dssp CEECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCCEeeHHHHHHHHhccccchHHHHHHHcCCCHHHHHHHHHHh
Confidence 3799999999999999999999999999999999999888889999999999999998887654
No 19
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=98.30 E-value=1.9e-06 Score=67.92 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=52.0
Q ss_pred hhhcHHHHHHHHHHHHHHH-HcCCCCcCHHHHHHHHhhcCCc-hHHHHHHHc-CCCHHHHHHHHHHHhcC
Q 029953 83 PKWSARAIRSFAMAELEAR-KLKYPNTGTEAFLMGILVEGTS-TTAKFLRAN-GITLFKVREETLNLLGK 149 (185)
Q Consensus 83 ~~fT~~a~~vL~~A~~~A~-~~~~~~I~~eHLLlALl~e~~~-~a~~iL~~~-GId~~~l~~~I~~~l~~ 149 (185)
..||+++.++|+.|..+|+ ++|+.||++||||+||+.++.. ....+-..+ .|+.+.+++.+..+...
T Consensus 97 ~~~S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~~~~~~~~~~~~l~~i~~~~L~~~~~~~~~~ 166 (171)
T 3zri_A 97 PAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYLSFKLISLFEGINRENLKKHFAMILSD 166 (171)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTHHHHSCHHHHHHTTTSCHHHHHHTHHHHTTT
T ss_pred CCcCHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhChhhhHHHHhhHHHHcCCHHHHHHHHHHHHhc
Confidence 3799999999999999999 9999999999999999987521 112333333 67888888777665544
No 20
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.33 E-value=0.00024 Score=67.69 Aligned_cols=73 Identities=15% Similarity=0.080 Sum_probs=57.4
Q ss_pred hHhhhcCCCcCCCCCCCCCCchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHH
Q 029953 62 ATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVRE 141 (185)
Q Consensus 62 ~~~l~~~P~~~~p~~~~~~m~~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~ 141 (185)
+..+...|++.++. + ...||+.+.++|..|..+|+.+|+.+|++||||+||+.+++. + |+.+.++.
T Consensus 65 ~~~l~~~p~~~~~~---~--~~~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~~-~--------~~~~~~~~ 130 (854)
T 1qvr_A 65 ERELARLPKVEGAE---V--GQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPG-L--------PGLEALKG 130 (854)
T ss_dssp HHHHHTSCCCCGGG---T--TCEECHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHSTT-S--------CCHHHHHH
T ss_pred HHHHhhCCCCCCCC---C--CCCCCHHHHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhcccc-c--------CCHHHHHH
Confidence 44466677744321 1 236999999999999999999999999999999999998653 1 88888988
Q ss_pred HHHHHhc
Q 029953 142 ETLNLLG 148 (185)
Q Consensus 142 ~I~~~l~ 148 (185)
.+....+
T Consensus 131 ~~~~~~~ 137 (854)
T 1qvr_A 131 ALKELRG 137 (854)
T ss_dssp HHTSSCS
T ss_pred HHHHhcc
Confidence 8876654
No 21
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=84.34 E-value=0.95 Score=33.33 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHH
Q 029953 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLR 130 (185)
Q Consensus 89 a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~ 130 (185)
+.++++.|-+.|+..+...|.++||-+|+-.| .....+|+
T Consensus 57 ~aEIlelAgn~A~~~k~~rItp~hi~lAI~nD--eEL~~Ll~ 96 (120)
T 2f8n_G 57 TAEILELAVNAARDNKKGRVTPRHILLAVAND--EELNQLLK 96 (120)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTS--HHHHHHTT
T ss_pred HHHHHHHHHHHHhhcCCceEcHHHHHHHHhcC--HHHHHHhC
Confidence 44888999999999999999999999999764 35555554
No 22
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=82.99 E-value=1.2 Score=32.99 Aligned_cols=40 Identities=20% Similarity=0.157 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHH
Q 029953 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLR 130 (185)
Q Consensus 89 a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~ 130 (185)
+.+++..|-+.|+..+...|.++||-+|+-.| .....+|+
T Consensus 58 ~aEIlelAgn~A~~~k~krItp~hi~lAI~nD--eEL~~Ll~ 97 (123)
T 2nqb_C 58 AAEVLELAGNAARDNKKTRIIPRHLQLAIRND--EELNKLLS 97 (123)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTS--HHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHhcc--HHHHHHhc
Confidence 45788899999999999999999999999764 35555554
No 23
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=82.16 E-value=1.2 Score=33.18 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHH
Q 029953 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (185)
Q Consensus 89 a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL 129 (185)
+.++++.|-+.|+..+...|.++||.+|+-.| .....+|
T Consensus 63 ~aEIlelAgn~A~~~k~krItprhi~lAI~nD--eEL~~Ll 101 (128)
T 1f66_C 63 TAEVLELAGNASKDLKVKRITPRHLQLAIRGD--EELDSLI 101 (128)
T ss_dssp HHHHHHHHHHHHHTTTCSEECHHHHHHHHHHS--HHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCeEcHHHHHHHHhcc--HHHhhhh
Confidence 45888999999999999999999999999764 3445555
No 24
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=82.11 E-value=1.5 Score=32.67 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHH
Q 029953 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLR 130 (185)
Q Consensus 89 a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~ 130 (185)
+.+++..|-+.|+..+...|.++||-+|+-.| .....+|.
T Consensus 60 ~aEIlelAgn~A~~~k~krItp~hi~lAI~nD--eEL~~L~~ 99 (129)
T 1tzy_A 60 TAEILELAGNAARDNKKTRIIPRHLQLAIRND--EELNKLLG 99 (129)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTS--HHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCeEcHHHHHHHHhcc--HHHHHHhC
Confidence 45788899999999999999999999999764 35566664
No 25
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=81.77 E-value=1.6 Score=32.65 Aligned_cols=40 Identities=20% Similarity=0.146 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHH
Q 029953 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLR 130 (185)
Q Consensus 89 a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~ 130 (185)
+.+++..|-+.|+..+...|.++||-+|+-.| .....+|+
T Consensus 60 ~aEIlelAgn~A~~~k~krItp~hI~lAI~nD--eEL~~Ll~ 99 (131)
T 1id3_C 60 AAEILELAGNAARDNKKTRIIPRHLQLAIRND--DELNKLLG 99 (131)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTC--HHHHHHTT
T ss_pred HHHHHHHHHHHHhhcCCceEcHHHHHHHHhcc--HHHHHHhc
Confidence 45788899999999999999999999999764 35566665
No 26
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=79.03 E-value=2.1 Score=32.65 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHH
Q 029953 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLR 130 (185)
Q Consensus 89 a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~ 130 (185)
+.++++.|-+.|+..+...|.++||-+|+-.| .....+|+
T Consensus 79 ~aEILelAgn~A~~~krkrItprhI~lAI~nD--eEL~~Ll~ 118 (149)
T 2f8n_K 79 TAEILELAGNAARDNKKTRIIPRHLQLAIRND--EELNKLLG 118 (149)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHS--HHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHhcc--HHHHHHhc
Confidence 45788999999999999999999999999764 35566654
No 27
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=76.90 E-value=3.7 Score=32.36 Aligned_cols=39 Identities=13% Similarity=0.178 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHH
Q 029953 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (185)
Q Consensus 89 a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL 129 (185)
+.+++..|-+.|+..+...|.++||-+|+-.| .....+|
T Consensus 141 ~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD--~eL~~L~ 179 (192)
T 2jss_A 141 TAEVLELAGNAAKDLKVKRITPRHLQLAIRGD--DELDSLI 179 (192)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTS--HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHhcc--HHHHHHH
Confidence 45788899999999999999999999999764 3556665
No 28
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=73.13 E-value=4.2 Score=28.78 Aligned_cols=37 Identities=5% Similarity=-0.129 Sum_probs=32.6
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 029953 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (185)
Q Consensus 84 ~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e 120 (185)
-+...+.+++..|.++|+..+-..|+++|+.+||=..
T Consensus 58 vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 58 VLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 3677888999999999999999999999999998543
No 29
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=72.20 E-value=4.5 Score=28.62 Aligned_cols=37 Identities=5% Similarity=-0.128 Sum_probs=32.6
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 029953 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (185)
Q Consensus 84 ~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e 120 (185)
-+...+.+++..|.++|+..+-..|+++|+.+||=..
T Consensus 58 vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 58 VLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3577788899999999999999999999999998543
No 30
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=57.90 E-value=11 Score=24.41 Aligned_cols=33 Identities=21% Similarity=0.046 Sum_probs=28.0
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 029953 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (185)
Q Consensus 85 fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlAL 117 (185)
...-+..++..|..+|...|-..|.++++.+++
T Consensus 36 ~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~ 68 (70)
T 1ku5_A 36 LEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 455566678889999999999999999999986
No 31
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=55.03 E-value=11 Score=25.69 Aligned_cols=32 Identities=13% Similarity=-0.066 Sum_probs=25.3
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 029953 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLM 115 (185)
Q Consensus 84 ~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLl 115 (185)
++.-=+++++.+|..+|..-|..+|+.+||=.
T Consensus 40 yl~iFV~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 40 LLKVFVREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 34444567788888889889999999999854
No 32
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=48.49 E-value=27 Score=22.98 Aligned_cols=32 Identities=16% Similarity=-0.133 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 029953 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (185)
Q Consensus 86 T~~a~~vL~~A~~~A~~~~~~~I~~eHLLlAL 117 (185)
+.-...+-.+|.+.|+..+-..|..+|++.|+
T Consensus 36 ~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~ 67 (76)
T 3b0c_W 36 LLFLHRLAEEARTNAFENKSKIIKPEHTIAAA 67 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 44455556668888999999999999999887
No 33
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=47.35 E-value=22 Score=24.34 Aligned_cols=30 Identities=3% Similarity=-0.072 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 029953 86 SARAIRSFAMAELEARKLKYPNTGTEAFLM 115 (185)
Q Consensus 86 T~~a~~vL~~A~~~A~~~~~~~I~~eHLLl 115 (185)
.-=+++++.+|...|..-+..+|+.+||-.
T Consensus 46 ~iFV~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 46 KVFVVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 334557778888888888899999999864
No 34
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=46.81 E-value=23 Score=22.53 Aligned_cols=27 Identities=11% Similarity=-0.074 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 029953 91 RSFAMAELEARKLKYPNTGTEAFLMGI 117 (185)
Q Consensus 91 ~vL~~A~~~A~~~~~~~I~~eHLLlAL 117 (185)
.+...|...|...+-..|.++|+.+|+
T Consensus 38 ~l~~~A~~~a~~~kRkTI~~~Di~~A~ 64 (68)
T 1b67_A 38 EIASEAVKLAKHAGRKTIKAEDIELAR 64 (68)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHG
T ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 344556667888999999999999987
No 35
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=46.73 E-value=22 Score=27.06 Aligned_cols=36 Identities=11% Similarity=-0.210 Sum_probs=30.5
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhh
Q 029953 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILV 119 (185)
Q Consensus 84 ~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~ 119 (185)
-+..-+..+...|.++|...|-..|..+|+++|+-.
T Consensus 111 ~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 111 LICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 356666778888999999999999999999999854
No 36
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=46.60 E-value=28 Score=22.36 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHh
Q 029953 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGIL 118 (185)
Q Consensus 86 T~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl 118 (185)
..++..+...|...|.+.+...|+.+||..|+-
T Consensus 39 GADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 39 GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 467788999999999999999999999998874
No 37
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=44.33 E-value=41 Score=22.11 Aligned_cols=34 Identities=15% Similarity=-0.001 Sum_probs=30.9
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 029953 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (185)
Q Consensus 84 ~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlAL 117 (185)
-...++.++++.|.+.++..|-..++++++=.||
T Consensus 35 dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Al 68 (70)
T 1taf_B 35 DVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHH
Confidence 5678899999999999999999999999998776
No 38
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=44.04 E-value=28 Score=24.42 Aligned_cols=37 Identities=3% Similarity=-0.135 Sum_probs=32.5
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 029953 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (185)
Q Consensus 84 ~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e 120 (185)
-+...+.+++..|..+|...+-..|+.+.+.+||=..
T Consensus 57 ~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 57 VLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4677888899999999999999999999999998543
No 39
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=43.49 E-value=27 Score=23.50 Aligned_cols=36 Identities=6% Similarity=-0.148 Sum_probs=32.5
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhh
Q 029953 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILV 119 (185)
Q Consensus 84 ~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~ 119 (185)
-+...+.+++..|..+|...+-..|+.+.+.+||=.
T Consensus 39 ~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~ 74 (84)
T 2hue_C 39 VLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 467888999999999999999999999999999844
No 40
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=42.59 E-value=27 Score=25.17 Aligned_cols=32 Identities=9% Similarity=-0.080 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 029953 90 IRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (185)
Q Consensus 90 ~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~ 121 (185)
..+...|.+.|+..+-..|.++||..|+-.++
T Consensus 77 ~~L~~~A~~~a~~~krktI~~~di~~Av~~~e 108 (119)
T 4g92_C 77 TELTMRAWIHAEDNKRRTLQRSDIAAALSKSD 108 (119)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHhcccCccCHHHHHHHHhcCc
Confidence 34556778889999999999999999997653
No 41
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=41.89 E-value=87 Score=21.88 Aligned_cols=70 Identities=11% Similarity=-0.056 Sum_probs=46.0
Q ss_pred HHHHHHHHhhcCCc-hHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC---C---CCCCCCCCHHHHHHHHHHHHHHHH
Q 029953 110 TEAFLMGILVEGTS-TTAKFLRANGITLFKVREETLNLLGKSDLFF---F---SPERPPLTEQAQRALDWAFNEKLK 179 (185)
Q Consensus 110 ~eHLLlALl~e~~~-~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~---~---~~~~i~~s~~a~~~Le~A~~~A~~ 179 (185)
..++|..|...++. ....+-+.+|++...+...+..+..++-... + -...+.+|+..+++++........
T Consensus 41 q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~ 117 (150)
T 3fm5_A 41 SYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKARVDA 117 (150)
T ss_dssp HHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHHHHHHH
Confidence 34455555445434 5688999999999999999998776533211 1 112478999999999877665543
No 42
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=41.15 E-value=46 Score=21.72 Aligned_cols=36 Identities=6% Similarity=-0.114 Sum_probs=30.9
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHh
Q 029953 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGIL 118 (185)
Q Consensus 83 ~~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl 118 (185)
+..-.-+.+++..|..+|...|-..|+.|-+=||+-
T Consensus 29 e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~ 64 (68)
T 1taf_A 29 EFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATE 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 345667788999999999999999999999998873
No 43
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=39.49 E-value=34 Score=23.60 Aligned_cols=32 Identities=13% Similarity=-0.067 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 029953 90 IRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (185)
Q Consensus 90 ~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~ 121 (185)
..+...|.+.|+..+-..|..+||.+++-.++
T Consensus 55 ~~l~~~A~~~a~~~krktI~~~di~~Av~~~e 86 (97)
T 1n1j_B 55 TELTLRAWIHTEDNKRRTLQRNDIAMAITKFD 86 (97)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHHHhcCc
Confidence 34556677888888889999999999997653
No 44
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=37.97 E-value=57 Score=22.66 Aligned_cols=63 Identities=19% Similarity=0.049 Sum_probs=45.3
Q ss_pred HHHHHHhhcCCchHHHHHH-HcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 029953 112 AFLMGILVEGTSTTAKFLR-ANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFN 175 (185)
Q Consensus 112 HLLlALl~e~~~~a~~iL~-~~GId~~~l~~~I~~~l~~~~~~~~~~~~i~~s~~a~~~Le~A~~ 175 (185)
-||..|-..+...+..+-+ ..+++...+-..+..+..++-.. ...+.+.+++..+.+|+.|..
T Consensus 20 siL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe-~~~~Dl~LT~~G~~~l~~a~~ 83 (95)
T 1bja_A 20 TILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE-KSGDGLIITGEAQDIISNAAT 83 (95)
T ss_dssp HHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE-EETTEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee-cCCCCeeeCHhHHHHHHHHHH
Confidence 3444455665556677777 78999999999999887765432 223448899999999997743
No 45
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=36.48 E-value=20 Score=24.99 Aligned_cols=32 Identities=16% Similarity=0.001 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 029953 90 IRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (185)
Q Consensus 90 ~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~ 121 (185)
.+++..|.+.|+..+-..|.+.||.+++-.++
T Consensus 47 ~el~~~A~~~a~~~krktI~~~di~~av~~~e 78 (98)
T 1jfi_A 47 ESLLKKACQVTQSRNAKTMTTSHLKQCIELEG 78 (98)
T ss_dssp HHHHHHHHHHHHTC---CBCHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHcCCCeecHHHHHHHHhcCc
Confidence 45667788889999999999999999997653
No 46
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=33.97 E-value=58 Score=21.14 Aligned_cols=35 Identities=11% Similarity=-0.099 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 029953 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (185)
Q Consensus 86 T~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e 120 (185)
-.++..+...|...|.+.+...|+.+|+..|+-.-
T Consensus 34 GADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 34 GAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 46788888999999999998899999998887543
No 47
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=32.20 E-value=55 Score=23.23 Aligned_cols=37 Identities=5% Similarity=-0.148 Sum_probs=32.1
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 029953 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (185)
Q Consensus 85 fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~ 121 (185)
+..-+..+...|..+|+..|-..|+.+.+.+++=.++
T Consensus 37 l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g 73 (111)
T 3b0c_T 37 SERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQG 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCC
Confidence 4556677888999999999999999999999997654
No 48
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=31.70 E-value=78 Score=20.89 Aligned_cols=34 Identities=15% Similarity=0.043 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhh
Q 029953 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGILV 119 (185)
Q Consensus 86 T~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~ 119 (185)
...+..+...|...|.+.+...|+.+|+..|+-.
T Consensus 37 GADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~ 70 (88)
T 3vlf_B 37 GAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 4578888888999999988888899998888743
No 49
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=31.59 E-value=1.3e+02 Score=20.74 Aligned_cols=68 Identities=12% Similarity=-0.080 Sum_probs=47.8
Q ss_pred HHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC-CCCC-----CCCCCHHHHHHHHHHHHHHHH
Q 029953 111 EAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFF-FSPE-----RPPLTEQAQRALDWAFNEKLK 179 (185)
Q Consensus 111 eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~-~~~~-----~i~~s~~a~~~Le~A~~~A~~ 179 (185)
.++|..|...+. ....+-+.+|++...+...+..+..++-... ..+. .+.+|+..+++++........
T Consensus 40 ~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~ 113 (144)
T 3f3x_A 40 FSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEANEVLRN 113 (144)
T ss_dssp HHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHHHHHHHH
Confidence 455666666554 7789999999999999999998876543221 1111 378999999999877665543
No 50
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=30.12 E-value=1.4e+02 Score=20.62 Aligned_cols=72 Identities=15% Similarity=-0.063 Sum_probs=47.3
Q ss_pred cCHHH--HHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC---C---CCCCCCCCHHHHHHHHHHHHHHHH
Q 029953 108 TGTEA--FLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFF---F---SPERPPLTEQAQRALDWAFNEKLK 179 (185)
Q Consensus 108 I~~eH--LLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~---~---~~~~i~~s~~a~~~Le~A~~~A~~ 179 (185)
+++.+ +|..|...+......+-+.+|++...+...+..+..++-... + -...+.+|+..+++++........
T Consensus 34 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~ 113 (140)
T 3hsr_A 34 LTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVK 113 (140)
T ss_dssp CCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHHHHHHH
Confidence 44443 444454454446788999999999999999988775533211 1 112467899999998887765544
No 51
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=30.08 E-value=56 Score=31.77 Aligned_cols=32 Identities=3% Similarity=0.058 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 029953 90 IRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (185)
Q Consensus 90 ~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~ 121 (185)
.++|..|-++|+..+...|++.|+.+|+-.+.
T Consensus 139 ~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~ 170 (1049)
T 3ksy_A 139 ADILKLVGNYVRNIRHYEITKQDIKVAMCADK 170 (1049)
T ss_dssp HHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCCceecCccccccccCCH
Confidence 47889999999999999999999999998764
No 52
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=28.74 E-value=86 Score=21.15 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=26.6
Q ss_pred hhcHHHHHHHHHHH------------HHHHHcCCCCcCHHHHHHHHh
Q 029953 84 KWSARAIRSFAMAE------------LEARKLKYPNTGTEAFLMGIL 118 (185)
Q Consensus 84 ~fT~~a~~vL~~A~------------~~A~~~~~~~I~~eHLLlALl 118 (185)
+++.++..+|..|. ..|...+-..|..+|++.|+-
T Consensus 27 ~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 27 KIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 56776666666554 567778888999999999984
No 53
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=28.39 E-value=1e+02 Score=20.35 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=23.5
Q ss_pred chHHHHHHHcCCCHHHHHHHHHHHhcCC
Q 029953 123 STTAKFLRANGITLFKVREETLNLLGKS 150 (185)
Q Consensus 123 ~~a~~iL~~~GId~~~l~~~I~~~l~~~ 150 (185)
-.+..|-+.+||+...|++.|..+...+
T Consensus 28 ~t~~eLA~~Lgvsr~tV~~~L~~Le~~G 55 (81)
T 1qbj_A 28 TTAHDLSGKLGTPKKEINRVLYSLAKKG 55 (81)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4578999999999999999999886543
No 54
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=26.59 E-value=1.7e+02 Score=20.79 Aligned_cols=74 Identities=16% Similarity=0.015 Sum_probs=47.5
Q ss_pred CCcCHHH--HHHHHhhcCCc-hHHHHHHHcCCCHHHHHHHHHHHhcCCCCC---CCC---CCCCCCCHHHHHHHHHHHHH
Q 029953 106 PNTGTEA--FLMGILVEGTS-TTAKFLRANGITLFKVREETLNLLGKSDLF---FFS---PERPPLTEQAQRALDWAFNE 176 (185)
Q Consensus 106 ~~I~~eH--LLlALl~e~~~-~a~~iL~~~GId~~~l~~~I~~~l~~~~~~---~~~---~~~i~~s~~a~~~Le~A~~~ 176 (185)
..+++.+ +|..|...+++ ....+-+.+|++...+-..++.+..++-.. .+. ...+.+|+..+++++.+...
T Consensus 27 ~gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 106 (151)
T 4aik_A 27 LELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQVDGV 106 (151)
T ss_dssp GCCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHHHHH
Confidence 3466554 45555444333 347888999999999999999877653321 111 12367899888888877665
Q ss_pred HHH
Q 029953 177 KLK 179 (185)
Q Consensus 177 A~~ 179 (185)
...
T Consensus 107 ~~~ 109 (151)
T 4aik_A 107 ISS 109 (151)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 55
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=25.77 E-value=1.7e+02 Score=20.45 Aligned_cols=68 Identities=9% Similarity=-0.099 Sum_probs=45.5
Q ss_pred HHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC---C---CCCCCCCCHHHHHHHHHHHHHHH
Q 029953 111 EAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFF---F---SPERPPLTEQAQRALDWAFNEKL 178 (185)
Q Consensus 111 eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~---~---~~~~i~~s~~a~~~Le~A~~~A~ 178 (185)
.++|..|...+.-....+-+.+|++...+...+..+..++-... + -...+.+++..+++++.......
T Consensus 55 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 128 (162)
T 3cjn_A 55 MRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLWPHMR 128 (162)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 34555555555456788999999999999999988775533211 0 11236789998888887665543
No 56
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=25.13 E-value=1.7e+02 Score=20.08 Aligned_cols=69 Identities=16% Similarity=0.030 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC---C---CCCCCCCCHHHHHHHHHHHHHHH
Q 029953 110 TEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFF---F---SPERPPLTEQAQRALDWAFNEKL 178 (185)
Q Consensus 110 ~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~---~---~~~~i~~s~~a~~~Le~A~~~A~ 178 (185)
-.++|..|...+......+-+.+|++...+...+..+..++-... + -...+.+|+..+++++.......
T Consensus 33 q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 107 (145)
T 3g3z_A 33 LFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTESAQ 107 (145)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHHHHHH
Confidence 344555665666566789999999999999999888765432210 0 11346789999998877665544
No 57
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=24.99 E-value=1.4e+02 Score=19.51 Aligned_cols=39 Identities=8% Similarity=-0.072 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcC
Q 029953 111 EAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGK 149 (185)
Q Consensus 111 eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~ 149 (185)
..|+-.|-+++.-.+..+-+.++|+...|+..++.+..+
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~ 43 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESM 43 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344444445554567899999999999999999987543
No 58
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=24.79 E-value=1.1e+02 Score=23.83 Aligned_cols=37 Identities=8% Similarity=-0.042 Sum_probs=27.6
Q ss_pred hhcHHHHHHHHHH------------HHHHHHcCCCCcCHHHHHHHHhhc
Q 029953 84 KWSARAIRSFAMA------------ELEARKLKYPNTGTEAFLMGILVE 120 (185)
Q Consensus 84 ~fT~~a~~vL~~A------------~~~A~~~~~~~I~~eHLLlALl~e 120 (185)
+++.++..+|..+ .+.|...+-..|..+||+.||-.-
T Consensus 33 rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~L 81 (179)
T 1jfi_B 33 RVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESL 81 (179)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence 4566666666544 466888899999999999999544
No 59
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=24.58 E-value=1e+02 Score=20.32 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHh
Q 029953 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGIL 118 (185)
Q Consensus 86 T~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl 118 (185)
-.++..+...|...|.+.+...|+.+|+..|+-
T Consensus 47 GADL~~l~~eAa~~alr~~~~~I~~~df~~Al~ 79 (86)
T 2krk_A 47 GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 467888889999999998888899999887764
No 60
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=24.21 E-value=1.7e+02 Score=19.77 Aligned_cols=67 Identities=12% Similarity=-0.077 Sum_probs=45.5
Q ss_pred HHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC---C---CCCCCCCCHHHHHHHHHHHHHH
Q 029953 111 EAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFF---F---SPERPPLTEQAQRALDWAFNEK 177 (185)
Q Consensus 111 eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~---~---~~~~i~~s~~a~~~Le~A~~~A 177 (185)
.++|..|...+......+-+.+|++...+...+..+..++-... + -...+.+|+..+++++......
T Consensus 37 ~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 109 (138)
T 1jgs_A 37 FKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLV 109 (138)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHHHHH
Confidence 34555565555456788889999999999999988776533211 1 1123678999999888766544
No 61
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=23.90 E-value=73 Score=20.50 Aligned_cols=35 Identities=9% Similarity=-0.156 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 029953 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (185)
Q Consensus 86 T~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e 120 (185)
...+..+...|...|.+.+...|+.+|+..|+-.-
T Consensus 37 GADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 37 GADINSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 46778888899999998888899999998887544
No 62
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=23.81 E-value=1.9e+02 Score=20.32 Aligned_cols=69 Identities=12% Similarity=-0.081 Sum_probs=47.1
Q ss_pred HHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC-CC-----CCCCCCCHHHHHHHHHHHHHHH
Q 029953 110 TEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFF-FS-----PERPPLTEQAQRALDWAFNEKL 178 (185)
Q Consensus 110 ~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~-~~-----~~~i~~s~~a~~~Le~A~~~A~ 178 (185)
-.++|..|...+.-....+-+.+|++...+...|..+..++-... .. ...+.+|+..+++++.......
T Consensus 48 q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~ 122 (162)
T 3k0l_A 48 QFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQVVQ 122 (162)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHHHHHH
Confidence 345555565655556789999999999999988888765433211 01 1246789999999887766543
No 63
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=23.76 E-value=1.9e+02 Score=20.30 Aligned_cols=69 Identities=10% Similarity=-0.056 Sum_probs=47.1
Q ss_pred HHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC---C---CCCCCCCCHHHHHHHHHHHHHHH
Q 029953 110 TEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFF---F---SPERPPLTEQAQRALDWAFNEKL 178 (185)
Q Consensus 110 ~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~---~---~~~~i~~s~~a~~~Le~A~~~A~ 178 (185)
-.++|..|...+.-....+-+.+|++...+...+..+..++-... + -...+.+|+..+++++.......
T Consensus 55 q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~ 129 (161)
T 3e6m_A 55 KLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLIN 129 (161)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHHHHHH
Confidence 344565665555456788999999999999999888765433211 0 11346789999999887766544
No 64
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=23.53 E-value=1.9e+02 Score=23.27 Aligned_cols=59 Identities=8% Similarity=-0.123 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHH
Q 029953 87 ARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLN 145 (185)
Q Consensus 87 ~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~ 145 (185)
..+.+++..|...|...+...|+.+|+..++-.-.......+++.+......+...+..
T Consensus 241 r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~ 299 (389)
T 1fnn_A 241 RLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVR 299 (389)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 45677788888888888889999999988765443445566677666544445444443
No 65
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=23.37 E-value=97 Score=20.97 Aligned_cols=30 Identities=3% Similarity=0.010 Sum_probs=25.0
Q ss_pred hHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Q 029953 124 TTAKFLRANGITLFKVREETLNLLGKSDLF 153 (185)
Q Consensus 124 ~a~~iL~~~GId~~~l~~~I~~~l~~~~~~ 153 (185)
.+.+|.+..||+..+|-++|..+-......
T Consensus 36 kageIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 36 KLAQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp EHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 479999999999999999999887665543
No 66
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=23.12 E-value=2.1e+02 Score=21.60 Aligned_cols=74 Identities=12% Similarity=0.013 Sum_probs=48.8
Q ss_pred CCCCcCHH--HHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC---C---CCCCCCCCHHHHHHHHHHHH
Q 029953 104 KYPNTGTE--AFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFF---F---SPERPPLTEQAQRALDWAFN 175 (185)
Q Consensus 104 ~~~~I~~e--HLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~---~---~~~~i~~s~~a~~~Le~A~~ 175 (185)
....+++. ++|..|...+.-....+-+.+|++...+...|..+..++-... + -...+.+|+..+++++....
T Consensus 42 ~~~gLt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 121 (207)
T 2fxa_A 42 KPYDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLE 121 (207)
T ss_dssp GGGTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHH
Confidence 33345554 4566666655566789999999999999988888764322110 0 11246899999999987765
Q ss_pred HH
Q 029953 176 EK 177 (185)
Q Consensus 176 ~A 177 (185)
..
T Consensus 122 ~~ 123 (207)
T 2fxa_A 122 EF 123 (207)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 67
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=23.08 E-value=2e+02 Score=20.15 Aligned_cols=71 Identities=17% Similarity=0.052 Sum_probs=49.4
Q ss_pred cCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC---C---CCCCCCCCHHHHHHHHHHHHHHH
Q 029953 108 TGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFF---F---SPERPPLTEQAQRALDWAFNEKL 178 (185)
Q Consensus 108 I~~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~---~---~~~~i~~s~~a~~~Le~A~~~A~ 178 (185)
..-.++|..|...+.-....+-+.+|++...+...+..+..++-... + -...+.+|+..+++++.......
T Consensus 50 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~ 126 (159)
T 3s2w_A 50 SGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMKKIAS 126 (159)
T ss_dssp TTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 34466777776666556789999999999999999888775433211 1 11246789999988887665544
No 68
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=22.81 E-value=1.8e+02 Score=19.59 Aligned_cols=39 Identities=3% Similarity=-0.110 Sum_probs=29.0
Q ss_pred HHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCC
Q 029953 113 FLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSD 151 (185)
Q Consensus 113 LLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~ 151 (185)
|+-.|-..+.-.+..+-+.+||+...|+..++.+..++-
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~ 45 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGK 45 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 444444444445789999999999999999998876543
No 69
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=22.44 E-value=2.4e+02 Score=20.90 Aligned_cols=20 Identities=10% Similarity=0.328 Sum_probs=15.3
Q ss_pred hHHHHHHHcCCCHHHHHHHH
Q 029953 124 TTAKFLRANGITLFKVREET 143 (185)
Q Consensus 124 ~a~~iL~~~GId~~~l~~~I 143 (185)
....++++.|+|.+++.+.+
T Consensus 127 ~l~~~a~~~Gld~~~~~~~~ 146 (208)
T 3kzq_A 127 THLQLAKEIGLNVQQFKNDM 146 (208)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 45778889999988776554
No 70
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=22.40 E-value=86 Score=23.68 Aligned_cols=34 Identities=9% Similarity=-0.279 Sum_probs=29.1
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 029953 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (185)
Q Consensus 84 ~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlAL 117 (185)
-++.-+..+...|.++|...|-..|..+|+++++
T Consensus 34 ~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 34 FVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 3455566677889999999999999999999999
No 71
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=22.39 E-value=2e+02 Score=20.20 Aligned_cols=55 Identities=11% Similarity=0.018 Sum_probs=37.1
Q ss_pred CCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 029953 121 GTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFN 175 (185)
Q Consensus 121 ~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~~~~~~i~~s~~a~~~Le~A~~ 175 (185)
+......+-+.+||+...+.+.+..+...+-...-....+.+++....+++....
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~~~~~~~~ 107 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESRE 107 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecCCceEEChhHHHHHHHHHH
Confidence 3345688889999999999999998776543211112346778877777665544
No 72
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=22.21 E-value=2e+02 Score=19.75 Aligned_cols=66 Identities=15% Similarity=0.021 Sum_probs=44.8
Q ss_pred HHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC------CCCCCCCCCHHHHHHHHHHHHHH
Q 029953 112 AFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFF------FSPERPPLTEQAQRALDWAFNEK 177 (185)
Q Consensus 112 HLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~------~~~~~i~~s~~a~~~Le~A~~~A 177 (185)
++|..|...+.-....+-+.+|++...+...+..+..++-... .-...+.+|+..+++++......
T Consensus 44 ~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~~~~ 115 (148)
T 3nrv_A 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFA 115 (148)
T ss_dssp HHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHHHHH
Confidence 4555555555456788899999999999999888765432111 01234788999999888766543
No 73
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=21.30 E-value=1.5e+02 Score=21.50 Aligned_cols=37 Identities=3% Similarity=-0.135 Sum_probs=32.7
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 029953 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (185)
Q Consensus 84 ~fT~~a~~vL~~A~~~A~~~~~~~I~~eHLLlALl~e 120 (185)
-+...+.+++..|..++...+-..|+.+.+.++|=..
T Consensus 76 vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~ 112 (121)
T 2ly8_A 76 VLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhC
Confidence 4677788899999999999999999999999998554
No 74
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=20.80 E-value=2.1e+02 Score=19.52 Aligned_cols=74 Identities=14% Similarity=-0.045 Sum_probs=48.9
Q ss_pred CCCcCHHH--HHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC---C---CCCCCCCCHHHHHHHHHHHHH
Q 029953 105 YPNTGTEA--FLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFF---F---SPERPPLTEQAQRALDWAFNE 176 (185)
Q Consensus 105 ~~~I~~eH--LLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~---~---~~~~i~~s~~a~~~Le~A~~~ 176 (185)
...+++.+ +|..|...+.-....+-+.+|++...+...+..+..++-... + -...+.+|+..+++++.....
T Consensus 32 ~~~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~ 111 (143)
T 3oop_A 32 SYDVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRDI 111 (143)
T ss_dssp TSSSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHHHH
Confidence 33455544 445555555556788999999999999999888775433210 1 123467899999998877655
Q ss_pred HH
Q 029953 177 KL 178 (185)
Q Consensus 177 A~ 178 (185)
..
T Consensus 112 ~~ 113 (143)
T 3oop_A 112 VE 113 (143)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 75
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=20.77 E-value=2.1e+02 Score=19.58 Aligned_cols=73 Identities=12% Similarity=0.013 Sum_probs=48.1
Q ss_pred CCCcCHH--HHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC---C---CCCCCCCCHHHHHHHHHHHHH
Q 029953 105 YPNTGTE--AFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFF---F---SPERPPLTEQAQRALDWAFNE 176 (185)
Q Consensus 105 ~~~I~~e--HLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~---~---~~~~i~~s~~a~~~Le~A~~~ 176 (185)
...++.. ++|..|...+......+-+.+|++...+...+..+..++-... + ....+.+|+..+++++.....
T Consensus 37 ~~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~ 116 (150)
T 2rdp_A 37 NYPITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVIEK 116 (150)
T ss_dssp TSSSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHHHH
Confidence 3345544 3555555555456788999999999999999988775432211 0 112367899999888876654
Q ss_pred H
Q 029953 177 K 177 (185)
Q Consensus 177 A 177 (185)
.
T Consensus 117 ~ 117 (150)
T 2rdp_A 117 R 117 (150)
T ss_dssp H
T ss_pred H
Confidence 4
No 76
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=20.75 E-value=2.2e+02 Score=19.81 Aligned_cols=69 Identities=7% Similarity=-0.047 Sum_probs=46.1
Q ss_pred HHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC------CCCCCCCCCHHHHHHHHHHHHHHH
Q 029953 110 TEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFF------FSPERPPLTEQAQRALDWAFNEKL 178 (185)
Q Consensus 110 ~eHLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~------~~~~~i~~s~~a~~~Le~A~~~A~ 178 (185)
-.++|..|...+.-....+-+.+|++...+...+..+..++-... .-...+.+++..+++++.......
T Consensus 51 ~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 125 (162)
T 2fa5_A 51 EWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVAPLVN 125 (162)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 344566666555456788889999999999999888765432211 012347789999988887665543
No 77
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=20.66 E-value=1.1e+02 Score=20.26 Aligned_cols=39 Identities=8% Similarity=0.101 Sum_probs=29.6
Q ss_pred HHHHHHhhcCCchHHHHHHHcCCCHH-HHHHHHHHHhcCC
Q 029953 112 AFLMGILVEGTSTTAKFLRANGITLF-KVREETLNLLGKS 150 (185)
Q Consensus 112 HLLlALl~e~~~~a~~iL~~~GId~~-~l~~~I~~~l~~~ 150 (185)
-||.-|...+...+..|-+.+||+.. .+++.+..+-..+
T Consensus 15 ~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eG 54 (79)
T 1xmk_A 15 KICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQG 54 (79)
T ss_dssp HHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCC
Confidence 34444556666678999999999999 9999998876543
No 78
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=20.26 E-value=2.2e+02 Score=19.67 Aligned_cols=67 Identities=6% Similarity=-0.021 Sum_probs=44.5
Q ss_pred HHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC------CCCCCCCCCHHHHHHHHHHHHHHH
Q 029953 112 AFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFF------FSPERPPLTEQAQRALDWAFNEKL 178 (185)
Q Consensus 112 HLLlALl~e~~~~a~~iL~~~GId~~~l~~~I~~~l~~~~~~~------~~~~~i~~s~~a~~~Le~A~~~A~ 178 (185)
++|..|...+.-....+-+.+|++...+...+..+..++-... .-...+.+|+..+++++.......
T Consensus 47 ~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 119 (155)
T 3cdh_A 47 RVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLVASAR 119 (155)
T ss_dssp HHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHHHHHHH
Confidence 3444454444446789999999999999999888765433211 012346789999888887655543
No 79
>3tl8_B Effector protein hopab2; plant immunity, solanum lycopersicum, triggered immunity, bacterial pathogenesis, transferase-LIG complex; HET: TPO; 2.50A {Pseudomonas syringae PV}
Probab=20.15 E-value=2.4e+02 Score=20.11 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=16.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhc
Q 029953 125 TAKFLRANGITLFKVREETLNLLG 148 (185)
Q Consensus 125 a~~iL~~~GId~~~l~~~I~~~l~ 148 (185)
+-+-|.+.|||.+.++.+++..+-
T Consensus 43 AL~~L~qqGvdmerLraAle~~im 66 (117)
T 3tl8_B 43 ALRGLVQQGVNLEHLRTALERHVM 66 (117)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 445577778888888888777653
Done!