Query 029958
Match_columns 185
No_of_seqs 120 out of 1071
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:18:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3266 Predicted glycine clea 100.0 9.2E-44 2E-48 282.0 12.8 167 13-179 2-169 (172)
2 COG0509 GcvH Glycine cleavage 100.0 1.8E-31 4E-36 207.5 11.6 115 41-179 12-129 (131)
3 PF01597 GCV_H: Glycine cleava 100.0 8.5E-30 1.8E-34 196.6 12.1 116 41-180 4-121 (122)
4 TIGR00527 gcvH glycine cleavag 100.0 2.2E-29 4.7E-34 195.8 11.7 115 41-179 9-125 (127)
5 PRK13380 glycine cleavage syst 100.0 9.7E-29 2.1E-33 195.9 12.8 113 43-179 19-133 (144)
6 KOG3373 Glycine cleavage syste 100.0 2.8E-29 6.1E-34 200.5 9.6 115 41-180 54-170 (172)
7 PRK01202 glycine cleavage syst 100.0 1.1E-28 2.5E-33 191.7 12.5 114 41-179 11-126 (127)
8 PRK00624 glycine cleavage syst 99.9 1.6E-26 3.5E-31 176.8 11.6 101 41-161 5-107 (114)
9 TIGR03077 not_gcvH glycine cle 99.9 1.7E-26 3.6E-31 175.8 11.4 101 41-161 3-105 (110)
10 cd06848 GCS_H Glycine cleavage 99.9 3.3E-23 7.3E-28 153.1 10.6 93 41-153 2-95 (96)
11 cd06663 Biotinyl_lipoyl_domain 98.4 6.3E-07 1.4E-11 62.0 5.6 70 57-153 1-72 (73)
12 PRK05889 putative acetyl-CoA c 97.2 0.0011 2.4E-08 45.9 5.4 34 100-133 23-56 (71)
13 PRK08225 acetyl-CoA carboxylas 97.0 0.0013 2.8E-08 45.3 4.4 34 100-133 22-55 (70)
14 PF00364 Biotin_lipoyl: Biotin 96.3 0.009 1.9E-07 41.8 5.0 36 98-133 25-60 (74)
15 PRK06748 hypothetical protein; 96.3 0.012 2.6E-07 42.8 5.4 35 100-134 25-60 (83)
16 cd06850 biotinyl_domain The bi 96.0 0.02 4.3E-07 37.8 5.2 35 99-133 19-53 (67)
17 PTZ00144 dihydrolipoamide succ 96.0 0.014 3.1E-07 53.8 6.0 64 70-134 41-105 (418)
18 PRK14875 acetoin dehydrogenase 95.3 0.033 7.1E-07 48.1 5.3 36 98-133 27-62 (371)
19 PRK06549 acetyl-CoA carboxylas 95.1 0.05 1.1E-06 42.7 5.4 36 99-134 81-116 (130)
20 PRK07051 hypothetical protein; 94.8 0.054 1.2E-06 38.4 4.4 36 98-133 29-64 (80)
21 COG0511 AccB Biotin carboxyl c 94.4 0.072 1.6E-06 41.9 4.5 34 98-131 89-122 (140)
22 COG0508 AceF Pyruvate/2-oxoglu 94.2 0.082 1.8E-06 48.5 5.1 59 76-135 5-64 (404)
23 PLN02226 2-oxoglutarate dehydr 94.2 0.12 2.6E-06 48.4 6.2 63 71-134 89-152 (463)
24 PRK05641 putative acetyl-CoA c 93.8 0.14 3.1E-06 41.1 5.3 37 98-134 103-139 (153)
25 PRK06302 acetyl-CoA carboxylas 92.9 0.15 3.3E-06 40.8 4.0 35 98-132 105-139 (155)
26 PLN02983 biotin carboxyl carri 92.3 0.19 4E-06 44.1 4.2 37 98-134 223-259 (274)
27 TIGR00531 BCCP acetyl-CoA carb 92.3 0.19 4.1E-06 40.3 3.9 36 98-133 106-141 (156)
28 PRK14040 oxaloacetate decarbox 92.3 0.24 5.3E-06 47.6 5.3 37 98-134 543-579 (593)
29 PF09891 DUF2118: Uncharacteri 91.6 0.39 8.4E-06 38.7 4.9 38 98-135 99-137 (150)
30 PRK14042 pyruvate carboxylase 91.2 0.33 7.2E-06 46.8 5.0 36 98-133 544-579 (596)
31 TIGR01108 oadA oxaloacetate de 91.0 0.34 7.3E-06 46.5 4.8 35 98-132 536-570 (582)
32 TIGR01235 pyruv_carbox pyruvat 90.9 0.38 8.2E-06 49.7 5.3 36 98-133 1093-1128(1143)
33 PRK09282 pyruvate carboxylase 90.9 0.33 7.2E-06 46.7 4.6 38 97-134 540-577 (592)
34 PRK05704 dihydrolipoamide succ 90.6 0.52 1.1E-05 43.3 5.5 37 98-134 27-63 (407)
35 TIGR02712 urea_carbox urea car 90.4 0.46 1E-05 49.2 5.5 40 94-133 1147-1186(1201)
36 cd06849 lipoyl_domain Lipoyl d 89.1 1.4 3.1E-05 28.0 5.3 35 98-132 25-59 (74)
37 TIGR01347 sucB 2-oxoglutarate 88.1 1 2.2E-05 41.4 5.4 37 98-134 25-61 (403)
38 TIGR02927 SucB_Actino 2-oxoglu 87.8 0.84 1.8E-05 43.9 4.8 61 73-134 135-196 (590)
39 PRK12999 pyruvate carboxylase; 87.7 0.68 1.5E-05 47.8 4.4 36 98-133 1095-1130(1146)
40 PRK11854 aceF pyruvate dehydro 87.3 1.1 2.4E-05 43.3 5.4 34 99-132 26-59 (633)
41 PRK11854 aceF pyruvate dehydro 87.0 1 2.3E-05 43.5 5.0 57 72-131 205-262 (633)
42 PRK11855 dihydrolipoamide acet 86.7 1.3 2.8E-05 42.0 5.5 36 99-134 27-62 (547)
43 TIGR01348 PDHac_trf_long pyruv 85.0 1.3 2.9E-05 42.1 4.6 60 73-134 116-176 (546)
44 PRK11855 dihydrolipoamide acet 84.8 2.2 4.8E-05 40.5 6.0 59 73-133 119-178 (547)
45 KOG0557 Dihydrolipoamide acety 84.0 2.1 4.5E-05 40.2 5.2 31 100-130 65-95 (470)
46 PRK11856 branched-chain alpha- 83.8 2.8 6E-05 38.2 6.0 38 98-135 27-64 (411)
47 TIGR01348 PDHac_trf_long pyruv 83.0 2.4 5.2E-05 40.4 5.4 36 99-134 25-60 (546)
48 KOG0559 Dihydrolipoamide succi 82.8 0.84 1.8E-05 41.9 2.2 36 95-130 94-129 (457)
49 TIGR01349 PDHac_trf_mito pyruv 82.7 1.8 3.9E-05 40.1 4.3 39 98-136 24-62 (435)
50 PF13375 RnfC_N: RnfC Barrel s 81.1 1.9 4.2E-05 32.2 3.2 40 100-140 51-90 (101)
51 COG1038 PycA Pyruvate carboxyl 81.0 1.6 3.5E-05 43.9 3.5 33 99-131 1099-1131(1149)
52 PLN02528 2-oxoisovalerate dehy 79.7 3.6 7.8E-05 37.9 5.2 34 99-132 24-57 (416)
53 PLN02744 dihydrolipoyllysine-r 79.0 3.7 8.1E-05 39.3 5.2 40 95-134 134-173 (539)
54 COG4770 Acetyl/propionyl-CoA c 75.4 5.1 0.00011 38.8 4.9 37 98-134 594-630 (645)
55 PRK11892 pyruvate dehydrogenas 72.1 7.7 0.00017 36.4 5.3 38 98-135 27-64 (464)
56 TIGR02927 SucB_Actino 2-oxoglu 72.0 7.2 0.00016 37.6 5.2 36 98-133 27-62 (590)
57 PF05896 NQRA: Na(+)-transloca 71.1 5.2 0.00011 34.9 3.6 34 100-134 50-83 (257)
58 PRK09783 copper/silver efflux 67.5 11 0.00024 34.3 5.2 20 116-135 209-228 (409)
59 TIGR01945 rnfC electron transp 59.7 8.4 0.00018 35.5 3.0 36 99-135 51-86 (435)
60 KOG0369 Pyruvate carboxylase [ 54.0 17 0.00037 36.4 4.1 39 92-131 1120-1158(1176)
61 cd06251 M14_ASTE_ASPA_like_1 A 52.5 39 0.00084 29.3 5.7 38 98-135 237-276 (287)
62 TIGR01936 nqrA NADH:ubiquinone 52.4 13 0.00029 34.7 3.0 32 100-132 50-81 (447)
63 TIGR03309 matur_yqeB selenium- 46.2 26 0.00056 30.6 3.6 29 98-130 182-210 (256)
64 PF13533 Biotin_lipoyl_2: Biot 46.0 20 0.00043 22.9 2.2 17 117-133 3-19 (50)
65 PRK05352 Na(+)-translocating N 45.5 20 0.00043 33.5 3.0 30 100-131 51-81 (448)
66 PF10830 DUF2553: Protein of u 42.8 71 0.0015 22.9 4.8 64 87-150 7-75 (76)
67 COG1726 NqrA Na+-transporting 41.7 27 0.00059 32.3 3.1 33 100-133 50-82 (447)
68 cd06254 M14_ASTE_ASPA_like_4 A 41.1 45 0.00097 28.8 4.4 41 94-134 237-279 (288)
69 PRK05035 electron transport co 41.0 29 0.00062 34.3 3.5 37 100-138 58-95 (695)
70 cd06255 M14_ASTE_ASPA_like_5 A 39.7 75 0.0016 27.6 5.6 35 98-132 249-285 (293)
71 TIGR02994 ectoine_eutE ectoine 39.6 76 0.0016 28.3 5.7 37 98-134 273-313 (325)
72 COG4072 Uncharacterized protei 38.9 66 0.0014 25.9 4.6 39 100-138 112-151 (161)
73 PF13437 HlyD_3: HlyD family s 36.5 24 0.00051 25.2 1.7 17 118-134 1-17 (105)
74 cd06252 M14_ASTE_ASPA_like_2 A 36.0 60 0.0013 28.5 4.4 40 95-134 259-302 (316)
75 PF00358 PTS_EIIA_1: phosphoen 35.0 37 0.0008 26.5 2.6 15 118-132 41-55 (132)
76 PF14382 ECR1_N: Exosome compl 33.0 67 0.0015 19.9 3.1 30 102-131 3-39 (39)
77 cd06250 M14_PaAOTO_like An unc 30.9 1.2E+02 0.0026 27.3 5.6 38 98-135 307-348 (359)
78 cd06253 M14_ASTE_ASPA_like_3 A 29.2 1.3E+02 0.0027 26.4 5.3 38 98-135 247-287 (298)
79 PF09851 SHOCT: Short C-termin 28.9 62 0.0013 18.8 2.3 15 165-179 13-27 (31)
80 TIGR00830 PTBA PTS system, glu 27.0 67 0.0015 24.7 2.8 15 118-132 37-51 (121)
81 COG4656 RnfC Predicted NADH:ub 26.7 65 0.0014 31.0 3.2 40 100-141 54-93 (529)
82 cd00210 PTS_IIA_glc PTS_IIA, P 26.4 67 0.0014 24.8 2.7 15 118-132 37-51 (124)
83 COG3608 Predicted deacylase [G 26.2 75 0.0016 28.8 3.3 32 100-131 276-310 (331)
84 KOG0558 Dihydrolipoamide trans 26.0 73 0.0016 29.5 3.2 62 72-134 63-125 (474)
85 PRK09439 PTS system glucose-sp 25.6 68 0.0015 26.1 2.7 15 118-132 59-73 (169)
86 KOG0125 Ataxin 2-binding prote 23.4 99 0.0021 28.3 3.5 50 121-180 159-210 (376)
87 PF02666 PS_Dcarbxylase: Phosp 22.7 1.3E+02 0.0027 24.6 3.9 13 118-130 22-34 (202)
88 TIGR00164 PS_decarb_rel phosph 22.0 1.4E+02 0.003 24.3 4.0 15 118-132 36-50 (189)
89 PF01551 Peptidase_M23: Peptid 21.5 78 0.0017 22.2 2.1 15 118-132 15-29 (96)
90 PF07831 PYNP_C: Pyrimidine nu 21.0 89 0.0019 21.9 2.3 18 98-115 41-58 (75)
91 TIGR00998 8a0101 efflux pump m 20.2 67 0.0015 27.6 1.8 19 116-134 204-222 (334)
No 1
>KOG3266 consensus Predicted glycine cleavage system H protein [Amino acid transport and metabolism]
Probab=100.00 E-value=9.2e-44 Score=281.96 Aligned_cols=167 Identities=40% Similarity=0.698 Sum_probs=157.3
Q ss_pred ccccCCCCCCCCcccccceeeeecccCCCCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcCCCCcccCCceeec
Q 029958 13 LPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTG 92 (185)
Q Consensus 13 ~~~~~~~~~~~p~~~~r~~~~~y~~~~~~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~vg~~~~~~~~v~g 92 (185)
.++...++..+|+++||||+|||..|+.+..||+++.+|+|++|+|++||+||+.+..+.|.+|+|.+|+++|..++|||
T Consensus 2 at~~~~~~~~~pS~vdr~ftr~y~~d~kg~~~D~~i~~HsnricvI~la~~hp~l~~g~~i~sv~~~ign~dRsqnkVSG 81 (172)
T KOG3266|consen 2 ATEIGMAEPSYPSVVDRYFTRYYKEDFKGSGYDHCIYQHSNRICVITLAPSHPALQSGKTIKSVTFQIGNCDRSQNKVSG 81 (172)
T ss_pred CccccccCCCChhhhhhhhhhhhhhhccCCCCCceEEecCCceEEEEecCCCchhhcccceeeeecccccchhhhheecc
Confidence 46677788999999999999999999876669999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEeecCceEEEE-ecCCeeeEeeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCCccchhhhhccCCCH
Q 029958 93 KRKKNAQHFESNTAVCKVC-TNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGL 171 (185)
Q Consensus 93 k~Kkg~~~l~~~~~l~~I~-s~~~~~~I~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~~~~~~~~~~~Lls~ 171 (185)
|+||||+.+++.++||.+. +.+++|.++|||+|+|+|||++|.++|++|++.|..+||+||++|.+++...+++.||+.
T Consensus 82 K~KkgAl~lq~~s~Lc~~~~a~g~~y~V~scVrG~LvEvN~rl~~~P~ll~~~pd~qGy~aI~lp~~e~~t~~~~~llt~ 161 (172)
T KOG3266|consen 82 KGKKGALILQELSPLCKFKTADGSTYVVRSCVRGTLVEVNERLKTTPDLLREAPDNQGYIAILLPAIEEETEIKESLLTQ 161 (172)
T ss_pred ccccccEeeccCCcceeEEecCCCeEEEeeeeceeEEEeehhhccCcHHHHhCCCcCcEEEEEecccccccccccccCCH
Confidence 9999999999999999995 555789999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHh
Q 029958 172 EDYKRKRE 179 (185)
Q Consensus 172 eeY~~~~~ 179 (185)
++|++...
T Consensus 162 eqy~ek~~ 169 (172)
T KOG3266|consen 162 EQYEEKSE 169 (172)
T ss_pred HHHHHHHh
Confidence 99988653
No 2
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=99.97 E-value=1.8e-31 Score=207.53 Aligned_cols=115 Identities=26% Similarity=0.400 Sum_probs=103.2
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+.+|+|+...+ ||+++||| |++||+++|+|++|++| +|+ .+..|++|++|+|.++..+|
T Consensus 12 ~~~heWvr~e~-d~~~tvGi--T~~aq~~lGdiv~Velpe~G~-----------------~v~~g~~~~~vESvKaasdv 71 (131)
T COG0509 12 TAEHEWVRVEG-DGTATVGI--TDYAQDQLGDIVFVELPEVGA-----------------EVKAGESLAVVESVKAASDV 71 (131)
T ss_pred ccceEEEEecC-CCEEEEeC--CHHHHHhcCCEEEEEcCCCCC-----------------eecCCCeEEEEEeeeeeccc
Confidence 35799987654 68999999 99999999999999999 886 68899999999999999999
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCCc--cchhhhhccCCCHHHHHHHHh
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKP--ADWLKIKSSLLGLEDYKRKRE 179 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~~--~~~~~~~~~Lls~eeY~~~~~ 179 (185)
||||+|+|+|||++|.++|++||++||++|||+.+.+.. +++ +.||+.++|.+...
T Consensus 72 yaPvsGeVvevN~~l~~~PeliN~dPyg~gWi~klk~~d~~~~~----~~L~~~~~y~~~~~ 129 (131)
T COG0509 72 YAPVSGEVVEVNEALVDSPELINSDPYGEGWIVKLKPADPSEEL----EALLDAEAYAELLK 129 (131)
T ss_pred cCCCceeEEEechhhhcChhhhccCCCCCceEEEEeeCChHHHH----HhccCHHHHHHHhh
Confidence 999999999999999999999999999999999777752 225 88999999998765
No 3
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=99.96 E-value=8.5e-30 Score=196.61 Aligned_cols=116 Identities=26% Similarity=0.456 Sum_probs=97.9
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+++|.|+... .+|.++||| |+++|+.+|+|++|++| +|. .++.|++|++|++.+.+++|
T Consensus 4 ~~~h~Wv~~~-~~g~~~vGi--t~~a~~~lG~i~~v~lp~~g~-----------------~~~~g~~~~~ies~k~~~~l 63 (122)
T PF01597_consen 4 TEDHLWVKPE-GDGVVRVGI--TDFAQDELGDIVYVELPKVGT-----------------KLKKGDPFASIESSKAVSDL 63 (122)
T ss_dssp ETTSEEEEEE-TTTEEEEEE---HHHHHHH-SEEEEE-B-TT------------------EE-TTSEEEEEEESSEEEEE
T ss_pred CCCcEEEEEC-CCCEEEEEE--CchHhhcCCceEEEEEccCCC-----------------EEecCCcEEEEEECceeeec
Confidence 3689888654 578999999 99999999999999999 765 69999999999999999999
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHhh
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKREE 180 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~~~ 180 (185)
+|||+|+|+++|+.|.++|++||++||++|||+++.|. +.++ ++||+.++|.++.+.
T Consensus 64 ~sPvsG~Vv~vN~~l~~~P~lln~~p~~~gWl~~i~~~d~~~~----~~Ll~~~eY~~~~~~ 121 (122)
T PF01597_consen 64 YSPVSGTVVEVNEELLDNPELLNSDPYGDGWLIKIKPSDPEEF----DELLSAEEYEKFLKE 121 (122)
T ss_dssp EESSSEEEEEE-GHHHT-TTHHHHSTTTTTEEEEEEESCGGGG----GGSBEHHHHHHHHHC
T ss_pred ccceEEEEEEEccccccChHHhccCCCCCCeEEEEEeCCHHHH----HhCCCHHHHHHHHhc
Confidence 99999999999999999999999999999999987775 4445 669999999998764
No 4
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=99.96 E-value=2.2e-29 Score=195.76 Aligned_cols=115 Identities=22% Similarity=0.354 Sum_probs=104.1
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+++|.|+.. ..+|.++||| |+++|+.+|+|.+|+|| +|. .++.|++||+|++.+...+|
T Consensus 9 ~~~H~Wv~~-~~~g~~~vGi--T~~a~~~lG~i~~v~lp~~G~-----------------~v~~g~~~~~IEs~K~~~~i 68 (127)
T TIGR00527 9 SKEHEWVRV-EGDGTATVGI--TEFAQDELGDIVFVELPEVGA-----------------EVSAGESCGSVESVKAASDI 68 (127)
T ss_pred CCCcEEEEE-cCCcEEEEee--cHHHhhCCCCCceeecCCCCC-----------------EecCCCEEEEEEEeeeeeee
Confidence 478998864 4578999999 99999999999999999 776 69999999999999999999
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHh
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKRE 179 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~~ 179 (185)
+||++|+|+++|+.|.++|++||++||++|||+.+.+. +.++ +.|||+++|.++.+
T Consensus 69 ~sPvsG~Vv~vN~~l~~~P~lln~~py~~gWl~~i~~~~~~~~----~~Ll~~~~Y~~~~~ 125 (127)
T TIGR00527 69 YAPVSGTVVEVNDALEDSPELVNEDPYGGGWLIKVKLSDESEL----EGLMDAEQYEATLE 125 (127)
T ss_pred ecCCcEEEEEehHhhhhChHHHhCCCccCcEEEEEecCCHHHH----HhcCCHHHHHHHhh
Confidence 99999999999999999999999999999999987765 4445 78999999999765
No 5
>PRK13380 glycine cleavage system protein H; Provisional
Probab=99.96 E-value=9.7e-29 Score=195.94 Aligned_cols=113 Identities=24% Similarity=0.359 Sum_probs=102.7
Q ss_pred CccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEee
Q 029958 43 GHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRC 121 (185)
Q Consensus 43 ~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~s 121 (185)
+|.|+.. +.+|+++||| |+++|+.+|+|++|++| +|. .|+.|++|++|++.+...+|+|
T Consensus 19 ~H~Wv~~-~~~g~~~vGi--td~aq~~lG~I~~v~lp~~G~-----------------~V~~Gd~~~~IEs~K~~~~v~s 78 (144)
T PRK13380 19 NHEWLRL-EGDGTVTVGI--TDYAQTMAGDVVFVRLKELGK-----------------KVEKGKPVATLESGKWAGPVPA 78 (144)
T ss_pred CeEEEEE-cCCCEEEEec--CHHHHHhcCCEEEEEcCCCCC-----------------EeeCCCeEEEEEEcceEeeeec
Confidence 8999865 4578999999 99999999999999999 776 6999999999999999999999
Q ss_pred eeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHh
Q 029958 122 CVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKRE 179 (185)
Q Consensus 122 pV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~~ 179 (185)
|++|+|+++|.+|.++|+|||++||++|||+.+.+. ++++ +.||+.++|.++.+
T Consensus 79 PvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~d~~~~----~~Ll~~~~y~~~~~ 133 (144)
T PRK13380 79 PLTGEVVEVNEALEDSPELVNEDPYGEGWFFRFKPANPEEL----KQLLDGDAADRLLK 133 (144)
T ss_pred CcCEEEEEEHHhhhhChHHhcCCCCCCCeEEEEEECCHHHH----HhcCCHHHHHHHHH
Confidence 999999999999999999999999999999977654 5555 88999999998765
No 6
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=99.96 E-value=2.8e-29 Score=200.54 Aligned_cols=115 Identities=24% Similarity=0.453 Sum_probs=103.4
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+..|+|+... |++++||| |++|++.+|++++|+|| +|. .|..|+.++.+++.++...|
T Consensus 54 t~qHEWV~~~--~~vgtvGI--t~~A~~~LGdvv~veLPe~Gt-----------------~vskgds~gavESVKaaSeI 112 (172)
T KOG3373|consen 54 TSQHEWVLVE--GGVGTVGI--TDFAQEHLGDVVYVELPEVGT-----------------EVSKGDSFGAVESVKAASEI 112 (172)
T ss_pred cceeeEEEec--CCeeEech--hhhhhhhcCceEEEEcCCCCC-----------------ccccCcceeeeeehhhhhhh
Confidence 6889999754 88999999 99999999999999999 886 57777888888777777779
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEE-EEeCCccchhhhhccCCCHHHHHHHHhh
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIA-IIMPKPADWLKIKSSLLGLEDYKRKREE 180 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWla-ii~p~~~~~~~~~~~Lls~eeY~~~~~~ 180 (185)
|+||+|+|+|||+.|.++|.|+|++||++|||+ +.+.+++++ +.||+.++|.+++..
T Consensus 113 ysp~sGeVtEiNe~l~EnPGlvN~Sp~e~GWl~k~kls~~~el----e~Lm~~e~Y~kf~~e 170 (172)
T KOG3373|consen 113 YSPVSGEVTEINEKLEENPGLVNESPEEDGWLIKMKLSSPEEL----ESLMNEEQYAKFCEE 170 (172)
T ss_pred hCcCCceEEEeccccccCCCcccCCcccCceEEEEEeCCHHHH----HHhcCHHHHHhhhhc
Confidence 999999999999999999999999999999999 556678888 899999999999764
No 7
>PRK01202 glycine cleavage system protein H; Provisional
Probab=99.96 E-value=1.1e-28 Score=191.66 Aligned_cols=114 Identities=25% Similarity=0.351 Sum_probs=103.1
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+++|.|+... +|.++||| |+++|+.+|+|++|+|| +|. .|+.|++|++|++.+..++|
T Consensus 11 s~~H~Wv~~~--~~~~~vGi--t~~a~~~lG~i~~v~lp~~G~-----------------~v~~g~~~~~IEs~K~~~~i 69 (127)
T PRK01202 11 TKSHEWVRVE--GDTATVGI--TDHAQEQLGDIVFVELPEVGD-----------------EVKAGETFGVVESVKAASDI 69 (127)
T ss_pred CCCcEEEEEc--CCEEEEee--CHHHHhhcCCeeEEEcCCCCC-----------------EecCCCEEEEEEEcceeeee
Confidence 3689998653 47999999 99999999999999999 775 69999999999999999999
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHh
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKRE 179 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~~ 179 (185)
+||++|+|+++|.+|.++|++||++||++|||+.+.+. +.++ +.|||.++|.++.+
T Consensus 70 ~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~~~~~----~~L~~~~~Y~~~~~ 126 (127)
T PRK01202 70 YAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSDESEL----DDLLDAEAYEALIE 126 (127)
T ss_pred ecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCCHHHH----HhCCCHHHHHHHhc
Confidence 99999999999999999999999999999999988765 3444 78999999999764
No 8
>PRK00624 glycine cleavage system protein H; Provisional
Probab=99.94 E-value=1.6e-26 Score=176.83 Aligned_cols=101 Identities=21% Similarity=0.277 Sum_probs=91.6
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+++|.|+...+ +|.++||| |++||+++|+|++|++| +|+ .|+.|++||+|++.+...+|
T Consensus 5 ~~~H~Wv~~~~-~~~~~vGi--T~~a~~~lG~i~~v~lp~~G~-----------------~V~~g~~i~~IEs~K~~~~i 64 (114)
T PRK00624 5 SDYHVWIEPIH-SRIVRLGL--TSKMQENLGNILHIDLPSVGS-----------------FCKEGEVLVILESSKSAIEV 64 (114)
T ss_pred CCCcEEEEEcC-CCEEEEee--CHHHHHhcCCEEEEECCCCCC-----------------EEeCCCEEEEEEeccEEEEE
Confidence 47899987555 67999999 99999999999999999 776 79999999999999999999
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccch
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADW 161 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~ 161 (185)
+||++|+|+++|++|.++|++||++||++|||+.+.+. +.++
T Consensus 65 ~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~~~~~~ 107 (114)
T PRK00624 65 LSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQLDEDFDS 107 (114)
T ss_pred eCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECChhHh
Confidence 99999999999999999999999999999999977664 4444
No 9
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=99.94 E-value=1.7e-26 Score=175.76 Aligned_cols=101 Identities=22% Similarity=0.283 Sum_probs=91.3
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+++|.|+...+ ++.++||| |++||+++|+|++|+|| +|+ .|+.|++|++|++.+...+|
T Consensus 3 ~~~H~Wv~~~~-~~~~~vGi--T~~aq~~lG~i~~v~lp~~G~-----------------~V~~g~~i~~IEs~K~~~ei 62 (110)
T TIGR03077 3 SDYHVWILPIH-SQVVRLGL--TSRMQENLGNILHIDLPSVGS-----------------SCKEGEVLVILESSKSAIEV 62 (110)
T ss_pred CCCcEEEEEcC-CCEEEEee--CHHHHHhcCCEEEEECCCCCC-----------------EEcCCCEEEEEEeccEEEEE
Confidence 47899987555 67999999 99999999999999999 775 79999999999999999999
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeC-Cccch
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADW 161 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p-~~~~~ 161 (185)
+||++|+|+++|++|.++|++||++||++|||+.+.+ ++.++
T Consensus 63 ~sP~sG~Vv~vN~~l~~~P~lln~~py~~gWl~~v~~~~~~~~ 105 (110)
T TIGR03077 63 LSPVSGEVIEVNIALEDDTQPINHSPESEGWFVVVQLDEDFDG 105 (110)
T ss_pred eCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECCHHHh
Confidence 9999999999999999999999999999999996665 34444
No 10
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=99.90 E-value=3.3e-23 Score=153.11 Aligned_cols=93 Identities=25% Similarity=0.375 Sum_probs=86.4
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+++|.|+...+ +|.++||| |+++++.+|+|.+|+++ +|. .++.|++|++|++.+.+++|
T Consensus 2 ~~~h~W~~~~~-~~~~~lGl--t~~~~~~lG~i~~i~~~~~G~-----------------~v~~g~~l~~iEs~k~~~~i 61 (96)
T cd06848 2 TKDHEWVKVEG-DGIATVGI--TDYAQDLLGDIVFVELPEVGT-----------------EVKKGDPFGSVESVKAASDL 61 (96)
T ss_pred CCCCEEEEECC-CcEEEEee--CHHHHhhCCCEEEEEecCCCC-----------------EEeCCCEEEEEEEccEEEEE
Confidence 35898887654 68999999 99999999999999999 665 79999999999999999999
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEEE
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAI 153 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlai 153 (185)
+||++|+|+++|.+|.++|++||++||++|||+.
T Consensus 62 ~sP~~G~v~~~n~~l~~~p~~ln~~p~~~gWl~~ 95 (96)
T cd06848 62 YSPVSGEVVEVNEALLDNPELINSDPYGEGWLVK 95 (96)
T ss_pred eCCCCEEEEEEhhhhhcChHHHhCCCCCCCeEEE
Confidence 9999999999999999999999999999999984
No 11
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=98.41 E-value=6.3e-07 Score=61.98 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=55.2
Q ss_pred EEeecCChHHHhcCCCEEEEEcC--CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 57 VIGLAPTHVAFKDEGGITAVDFN--VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 57 ~vGiapt~~a~~~lg~I~~V~~~--vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
++|+ +++++ .++....+++. .|+ .++.|++|+.+++.+...+|+||++|+|+++|..+
T Consensus 1 ~~~~--~~~~~-~~~~g~~~~~~v~~G~-----------------~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~ 60 (73)
T cd06663 1 TILI--PDLAQ-HLGDGTVVKWLKKVGD-----------------KVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKE 60 (73)
T ss_pred Cccc--CCCCC-CccCEEEEEEEcCCcC-----------------EECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCC
Confidence 4667 77777 55666655444 443 79999999999999999999999999999999888
Q ss_pred hcCccccccCCCCCceEEE
Q 029958 135 IKQPGLLNSSADREGYIAI 153 (185)
Q Consensus 135 ~~~P~Lln~~P~~~GWlai 153 (185)
.++ .+..+||+.
T Consensus 61 g~~-------v~~g~~l~~ 72 (73)
T cd06663 61 GTK-------VEGDTPLVK 72 (73)
T ss_pred CCE-------ECCCCEEEE
Confidence 765 456688874
No 12
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=97.16 E-value=0.0011 Score=45.89 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=31.6
Q ss_pred EEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 100 HFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 100 ~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
.+++|++||.+++.+..++|+||++|.|.+++-.
T Consensus 23 ~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~ 56 (71)
T PRK05889 23 QIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVS 56 (71)
T ss_pred EECCCCEEEEEEeccceeEEeCCCCEEEEEEEeC
Confidence 7999999999999999999999999999999843
No 13
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.99 E-value=0.0013 Score=45.31 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=31.4
Q ss_pred EEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 100 HFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 100 ~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
.+++|++|+++++.+...++.||++|+|.+++-.
T Consensus 22 ~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~ 55 (70)
T PRK08225 22 TVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQ 55 (70)
T ss_pred EECCCCEEEEEEcCCCcceEeCCCCEEEEEEEec
Confidence 7999999999999999999999999999998743
No 14
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=96.32 E-value=0.009 Score=41.76 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=32.5
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
+..++.|++||.|++.+...+|+||.+|.|.++.-.
T Consensus 25 G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~ 60 (74)
T PF00364_consen 25 GDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVE 60 (74)
T ss_dssp TEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESST
T ss_pred CCEEEcCceEEEEEcCccceEEECCCCEEEEEEEEC
Confidence 458999999999999999999999999999988644
No 15
>PRK06748 hypothetical protein; Validated
Probab=96.25 E-value=0.012 Score=42.82 Aligned_cols=35 Identities=6% Similarity=0.021 Sum_probs=31.5
Q ss_pred EEeecCceEEEEe-cCCeeeEeeeeeeEEEeeehhh
Q 029958 100 HFESNTAVCKVCT-NNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 100 ~l~~~~~l~~I~s-~~~~~~I~spV~G~vvevN~~L 134 (185)
.++.|++|++|++ ++...+|.||.+|+|.+++-..
T Consensus 25 ~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~ 60 (83)
T PRK06748 25 YVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVE 60 (83)
T ss_pred EECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCC
Confidence 7999999999999 8888899999999999998443
No 16
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=96.01 E-value=0.02 Score=37.75 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=30.7
Q ss_pred eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
..+++|+.|+++++.+...+|+||.+|.|..++-.
T Consensus 19 ~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~ 53 (67)
T cd06850 19 DKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVK 53 (67)
T ss_pred CEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEEC
Confidence 37999999999988777789999999999988754
No 17
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=96.01 E-value=0.014 Score=53.77 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=44.3
Q ss_pred CCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 70 EGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 70 lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
.+.|..|.+| .|.....+.-++=..|- +..|+.|++||+|++.+..++|.||.+|+|.++.-.-
T Consensus 41 ~~~i~~i~~P~lg~~~~eg~I~~w~v~~-Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~ 105 (418)
T PTZ00144 41 YFSIKVIKVPTMGDSISEGTVVEWKKKV-GDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEE 105 (418)
T ss_pred cccceEEecCCCCCCcceEEEEEEEeCC-CCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCC
Confidence 3445556666 45433323222222333 4589999999999999999999999999999887443
No 18
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=95.32 E-value=0.033 Score=48.10 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=32.3
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
+..|+.|++||+|++.+.+.+|.||.+|+|.+++-.
T Consensus 27 g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~ 62 (371)
T PRK14875 27 GDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQ 62 (371)
T ss_pred CCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcC
Confidence 448999999999999999999999999999988643
No 19
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.14 E-value=0.05 Score=42.65 Aligned_cols=36 Identities=6% Similarity=0.041 Sum_probs=32.1
Q ss_pred eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
..++.|++|+.+++.+-..+|.||.+|+|.+++-..
T Consensus 81 d~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~ 116 (130)
T PRK06549 81 DQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTP 116 (130)
T ss_pred CEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCC
Confidence 379999999999999999999999999999887544
No 20
>PRK07051 hypothetical protein; Validated
Probab=94.84 E-value=0.054 Score=38.37 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=31.6
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
+..++.|++++++++.+...+|.||++|+|..++-.
T Consensus 29 Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~ 64 (80)
T PRK07051 29 GDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVE 64 (80)
T ss_pred CCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcC
Confidence 447999999999999988889999999999988743
No 21
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=94.37 E-value=0.072 Score=41.93 Aligned_cols=34 Identities=6% Similarity=0.077 Sum_probs=30.7
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeee
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVN 131 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN 131 (185)
+..|+.|++||.|++-+-+.+|.||.+|.|.+|=
T Consensus 89 Gd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Il 122 (140)
T COG0511 89 GDTVKAGQTLAIIEAMKMENEIEAPADGVVKEIL 122 (140)
T ss_pred CCEEcCCCEEEEEEeeeccceecCCCCcEEEEEE
Confidence 4479999999999999999999999999999873
No 22
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=94.18 E-value=0.082 Score=48.48 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=43.1
Q ss_pred EEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhhh
Q 029958 76 VDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLI 135 (185)
Q Consensus 76 V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L~ 135 (185)
|.+| .|.....+.-++-.+|- +..|+.|++|++|++++...+|.||.+|+|.++.-.--
T Consensus 5 i~mP~lge~~~EG~I~~W~~k~-GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G 64 (404)
T COG0508 5 IKMPDLGETMTEGTIVEWLKKV-GDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEG 64 (404)
T ss_pred EecCCCCCccceEEEEEEecCC-CCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCC
Confidence 4455 44433334444444444 34899999999999999999999999999999876543
No 23
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=94.16 E-value=0.12 Score=48.42 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=46.0
Q ss_pred CCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 71 GGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 71 g~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
|++..|.+| .|.....+.-++=..|. +..|+.|++||+|++.+.+.+|.||.+|+|.++.-.-
T Consensus 89 ~~m~~i~mP~lg~~~~eG~I~~w~v~~-GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~e 152 (463)
T PLN02226 89 GDTVEAVVPHMGESITDGTLATFLKKP-GERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKE 152 (463)
T ss_pred CCceEEecCCCCCCcceEEEEEEEeCC-CCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCC
Confidence 455566677 56543333333333333 4689999999999999999999999999999887443
No 24
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.83 E-value=0.14 Score=41.06 Aligned_cols=37 Identities=5% Similarity=-0.019 Sum_probs=32.9
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..++.|+.|+.+++.+...+|.||.+|+|..++-+.
T Consensus 103 Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~ 139 (153)
T PRK05641 103 GQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKE 139 (153)
T ss_pred CCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCC
Confidence 4589999999999999988999999999999998543
No 25
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=92.86 E-value=0.15 Score=40.80 Aligned_cols=35 Identities=9% Similarity=0.121 Sum_probs=31.9
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~ 132 (185)
+..|+.|++||.|++.+...+|.||++|+|+++.-
T Consensus 105 Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v 139 (155)
T PRK06302 105 GDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILV 139 (155)
T ss_pred CCEeCCCCEEEEEEecccceEEecCCCeEEEEEEc
Confidence 45799999999999999999999999999999874
No 26
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=92.34 E-value=0.19 Score=44.06 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=33.4
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..|+.|++||.|++.+...+|.||.+|+|++++-.-
T Consensus 223 GDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVke 259 (274)
T PLN02983 223 GDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAED 259 (274)
T ss_pred CCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCC
Confidence 4589999999999999999999999999999998543
No 27
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=92.28 E-value=0.19 Score=40.32 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=32.3
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
+..|+.|++||.|++.+-..+|.|+++|+|.++.-.
T Consensus 106 Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~ 141 (156)
T TIGR00531 106 GDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVE 141 (156)
T ss_pred CCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeC
Confidence 457999999999999999999999999999988743
No 28
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=92.25 E-value=0.24 Score=47.62 Aligned_cols=37 Identities=8% Similarity=0.064 Sum_probs=33.2
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..|++|++||.+++.+.+.+|.||++|+|.+++-..
T Consensus 543 Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~ 579 (593)
T PRK14040 543 GQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKE 579 (593)
T ss_pred CCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCC
Confidence 5589999999999999999999999999999998543
No 29
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=91.57 E-value=0.39 Score=38.65 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=28.3
Q ss_pred ceEEeecCceEEEEecCCe-eeEeeeeeeEEEeeehhhh
Q 029958 98 AQHFESNTAVCKVCTNNDS-YIVRCCVKGSLLEVNNRLI 135 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~-~~I~spV~G~vvevN~~L~ 135 (185)
+-.|+.|+.|+.+.+.++. ..++||++|.|+-||+.=.
T Consensus 99 G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~p~ 137 (150)
T PF09891_consen 99 GDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEIPW 137 (150)
T ss_dssp SEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEETT
T ss_pred CcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEecCC
Confidence 4579999999999888775 7999999999999997543
No 30
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.24 E-value=0.33 Score=46.80 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=32.4
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
+..|++|++|+.|++.+-+.+|.||++|.|.++.-.
T Consensus 544 Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~ 579 (596)
T PRK14042 544 GDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQ 579 (596)
T ss_pred CCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeC
Confidence 558999999999999999999999999999888643
No 31
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=91.02 E-value=0.34 Score=46.54 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=32.2
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~ 132 (185)
+..|+.|++|+.|++.+.+.+|.||++|+|.+++-
T Consensus 536 Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v 570 (582)
T TIGR01108 536 GQTVAEGEVLLILEAMKMETEIKAAAAGTVREILV 570 (582)
T ss_pred CCEECCCCEEEEEEeccceeEEecCCCeEEEEEEe
Confidence 45899999999999999999999999999998873
No 32
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=90.93 E-value=0.38 Score=49.66 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=33.0
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
+..|++|++|+.|++.+.+.+|.||++|+|.+++-.
T Consensus 1093 Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~ 1128 (1143)
T TIGR01235 1093 GQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVK 1128 (1143)
T ss_pred CCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeC
Confidence 568999999999999999999999999999998744
No 33
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=90.91 E-value=0.33 Score=46.69 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=33.5
Q ss_pred cceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 97 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 97 g~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
-+..|++|++|+.+++.+...+|+||++|+|.+++-.-
T Consensus 540 ~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~ 577 (592)
T PRK09282 540 EGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKE 577 (592)
T ss_pred CCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCC
Confidence 35689999999999999999999999999998887544
No 34
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=90.64 E-value=0.52 Score=43.33 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=32.5
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..|+.|++||.|++.+..++|.||.+|+|.++.-..
T Consensus 27 Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~ 63 (407)
T PRK05704 27 GDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEE 63 (407)
T ss_pred cCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCC
Confidence 4589999999999999999999999999998776433
No 35
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=90.43 E-value=0.46 Score=49.23 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=35.0
Q ss_pred ccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 94 RKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 94 ~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
.++-+..|++|++|+.|++.+.+.+|.||++|+|.+++-.
T Consensus 1147 ~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~ 1186 (1201)
T TIGR02712 1147 LVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQ 1186 (1201)
T ss_pred EeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeC
Confidence 3445679999999999999999999999999999998843
No 36
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=89.08 E-value=1.4 Score=28.05 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=29.9
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~ 132 (185)
+..+..+++++.++..+....+.+|.+|.+.+.|-
T Consensus 25 g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~ 59 (74)
T cd06849 25 GDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILV 59 (74)
T ss_pred CCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEee
Confidence 34788999999998877788999999999988773
No 37
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=88.12 E-value=1 Score=41.41 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=32.7
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..++.|++||+|++++...+|.||.+|.|.++.-.-
T Consensus 25 Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~e 61 (403)
T TIGR01347 25 GDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKE 61 (403)
T ss_pred cCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCC
Confidence 4589999999999999999999999999998876443
No 38
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=87.76 E-value=0.84 Score=43.88 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=42.5
Q ss_pred EEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 73 ITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 73 I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
++.|.+| .|.....+.-++= .++-+..|+.|++||+|++++...+|.||.+|+|.++.-..
T Consensus 135 ~~~~~~P~lg~~~~eg~i~~w-~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~ 196 (590)
T TIGR02927 135 ATDIEMPELGESVTEGTITQW-LKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEE 196 (590)
T ss_pred ceEEEcCCCCCCcceEEEEEE-EeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCC
Confidence 3456666 4532222222222 33335689999999999999999999999999998776544
No 39
>PRK12999 pyruvate carboxylase; Reviewed
Probab=87.69 E-value=0.68 Score=47.83 Aligned_cols=36 Identities=8% Similarity=0.121 Sum_probs=32.4
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
++.|++|++|+.+++.+-+.+|.||++|+|.+++-.
T Consensus 1095 Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~ 1130 (1146)
T PRK12999 1095 GDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVK 1130 (1146)
T ss_pred CCEECCCCEEEEEEccccceEEecCCCEEEEEEEeC
Confidence 458999999999999999999999999999998744
No 40
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=87.31 E-value=1.1 Score=43.30 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=31.2
Q ss_pred eEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958 99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~ 132 (185)
..++.|++|+.|++.+...+|.||.+|.|.++.-
T Consensus 26 d~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~ 59 (633)
T PRK11854 26 DKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKV 59 (633)
T ss_pred CEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEe
Confidence 3799999999999999999999999999987664
No 41
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=86.96 E-value=1 Score=43.52 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=41.6
Q ss_pred CEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeee
Q 029958 72 GITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVN 131 (185)
Q Consensus 72 ~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN 131 (185)
.+..+.+| .| ...+.-++=..| -+..++.|++||+|++.+...+|.||.+|+|.++.
T Consensus 205 ~~~~~~~p~lg--~~eg~v~~w~v~-~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~ 262 (633)
T PRK11854 205 GVKDVNVPDIG--GDEVEVTEVMVK-VGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIK 262 (633)
T ss_pred CceEEecCCCc--ccceEEEEEEec-CCCeecCCCceEEEEecceeeEeeCCCCeEEEEEe
Confidence 34556677 56 223333333333 45689999999999999999999999999987655
No 42
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=86.71 E-value=1.3 Score=41.99 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=32.2
Q ss_pred eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
..++.|++||+|++.+..+.|.||++|.|..++-+.
T Consensus 27 d~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~ 62 (547)
T PRK11855 27 DTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKV 62 (547)
T ss_pred CEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCC
Confidence 379999999999999999999999999999887543
No 43
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=84.98 E-value=1.3 Score=42.09 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=45.1
Q ss_pred EEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 73 ITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 73 I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..|.+| .|. ...+. +.--.++-+..++.|++||+|++.+...+|.||.+|+|.+++-..
T Consensus 116 ~~~~~~P~~g~-~~eg~-i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~ 176 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVT-VIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKV 176 (546)
T ss_pred ceEEeCCCCCC-cceeE-EeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCC
Confidence 3566677 665 43343 333344446799999999999999999999999999999887554
No 44
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=84.77 E-value=2.2 Score=40.47 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=43.7
Q ss_pred EEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 73 ITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 73 I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
+..|.+| .|. ...+.-+. =.++-+..++.|+.||+|++.+...+|.||.+|+|..+.-.
T Consensus 119 ~~~~~~P~~g~-~~eg~i~~-w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~ 178 (547)
T PRK11855 119 VVEVKVPDIGE-ITEVEVIE-WLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVK 178 (547)
T ss_pred ceEEecCCCCC-cceeEEeE-EEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecC
Confidence 4566677 565 43333332 24444679999999999999999999999999999886544
No 45
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=84.01 E-value=2.1 Score=40.21 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=25.8
Q ss_pred EEeecCceEEEEecCCeeeEeeeeeeEEEee
Q 029958 100 HFESNTAVCKVCTNNDSYIVRCCVKGSLLEV 130 (185)
Q Consensus 100 ~l~~~~~l~~I~s~~~~~~I~spV~G~vvev 130 (185)
.+.+|+.||+||+++++..+-+.=.|.|-.|
T Consensus 65 kls~GDvl~EVETDKAtmd~E~~ddGyLAKI 95 (470)
T KOG0557|consen 65 KLSAGDVLLEVETDKATMDVEAQDDGYLAKI 95 (470)
T ss_pred ccCCCceEEEEecccceeeeeeccCCeeeee
Confidence 7999999999999999888777777766544
No 46
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=83.82 E-value=2.8 Score=38.18 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=33.2
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLI 135 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L~ 135 (185)
+..++.|++||.|++.+....|.||.+|.|.+++-..-
T Consensus 27 Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G 64 (411)
T PRK11856 27 GDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEG 64 (411)
T ss_pred cCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCC
Confidence 45899999999999999999999999999998775544
No 47
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=83.01 E-value=2.4 Score=40.36 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=32.2
Q ss_pred eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
..++.|++||+|++.+..+.|.|+++|+|.+++-+.
T Consensus 25 d~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~ 60 (546)
T TIGR01348 25 DKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKV 60 (546)
T ss_pred CEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecC
Confidence 379999999999999999999999999999887654
No 48
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=82.85 E-value=0.84 Score=41.85 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=32.5
Q ss_pred cccceEEeecCceEEEEecCCeeeEeeeeeeEEEee
Q 029958 95 KKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEV 130 (185)
Q Consensus 95 Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvev 130 (185)
|+-+..++.++.+|+|+.++....|.||.+|.|.|+
T Consensus 94 K~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~ 129 (457)
T KOG0559|consen 94 KKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITEL 129 (457)
T ss_pred hCcccccccchhheeeeccceeeeccCCCcceeeEE
Confidence 333568999999999999999999999999999998
No 49
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=82.69 E-value=1.8 Score=40.09 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=34.3
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhhhc
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIK 136 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L~~ 136 (185)
+..++.|++||+|++++...+|.||.+|.|.+++-...+
T Consensus 24 Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~ 62 (435)
T TIGR01349 24 GDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGT 62 (435)
T ss_pred CCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCC
Confidence 447899999999999999999999999999988766654
No 50
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=81.14 E-value=1.9 Score=32.20 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=29.3
Q ss_pred EEeecCceEEEEecCCeeeEeeeeeeEEEeeehhhhcCccc
Q 029958 100 HFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGL 140 (185)
Q Consensus 100 ~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L~~~P~L 140 (185)
.|..|+.|++... .-.-.|+|||+|+|.+|.+...-++.-
T Consensus 51 ~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~~~~~g~~ 90 (101)
T PF13375_consen 51 KVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKRPIPHGSK 90 (101)
T ss_pred EEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeeeEcCCCCC
Confidence 5778888886632 214589999999999998877655443
No 51
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=81.01 E-value=1.6 Score=43.86 Aligned_cols=33 Identities=9% Similarity=0.110 Sum_probs=29.6
Q ss_pred eEEeecCceEEEEecCCeeeEeeeeeeEEEeee
Q 029958 99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVN 131 (185)
Q Consensus 99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN 131 (185)
..|++|++|+.+++-+-+..|-||.+|+|.+|-
T Consensus 1099 ~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~ 1131 (1149)
T COG1038 1099 DKVKKGDVLAVIEAMKMETTISAPFDGTVKEVL 1131 (1149)
T ss_pred CeecCCCeeeehhhhhhceeeecCCCceEeEEE
Confidence 478999999999988888899999999999874
No 52
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=79.65 E-value=3.6 Score=37.90 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=30.5
Q ss_pred eEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958 99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~ 132 (185)
..++.|++||.+++.+...++.||.+|.|.++.-
T Consensus 24 d~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v 57 (416)
T PLN02528 24 DQVEEFQPLCEVQSDKATIEITSRYKGKVAQINF 57 (416)
T ss_pred CEECCCCEEEEEEeCceeEEEecCCCEEEEEEEe
Confidence 4799999999999999999999999999877653
No 53
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=78.95 E-value=3.7 Score=39.28 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=34.1
Q ss_pred cccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 95 KKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 95 Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
|+-+..++.|++||+|++++...++.||.+|+|.++--..
T Consensus 134 vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~e 173 (539)
T PLN02744 134 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 173 (539)
T ss_pred ecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecC
Confidence 3446689999999999999999999999999998876443
No 54
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=75.38 E-value=5.1 Score=38.84 Aligned_cols=37 Identities=8% Similarity=0.031 Sum_probs=32.5
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
++.|..|++|+.+++-+-+..|++|.+|+|..+|-.-
T Consensus 594 G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~ 630 (645)
T COG4770 594 GQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAE 630 (645)
T ss_pred CCEecCCCeEEEeEehhcccceecCcCcEEEEEEecC
Confidence 4589999999999988888899999999999987543
No 55
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=72.09 E-value=7.7 Score=36.36 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=32.5
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLI 135 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L~ 135 (185)
+..++.|+.|+.|++++...++.||.+|+|.++.-..-
T Consensus 27 Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G 64 (464)
T PRK11892 27 GDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEG 64 (464)
T ss_pred CCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCC
Confidence 55899999999999999999999999999877665443
No 56
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=72.03 E-value=7.2 Score=37.57 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=31.4
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
+..++.|++||.+++++....+.||.+|.|.+++-.
T Consensus 27 Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~ 62 (590)
T TIGR02927 27 GDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAE 62 (590)
T ss_pred CCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeec
Confidence 448999999999999999999999999998776543
No 57
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=71.12 E-value=5.2 Score=34.91 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=24.6
Q ss_pred EEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 100 HFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 100 ~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
.|..|++|..=+... ...+-||++|+|.+||.--
T Consensus 50 ~Vk~Gq~LF~dK~~p-~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 50 RVKAGQPLFEDKKNP-GVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred EEeCCCeeEeeCCCC-CcEEecCCCeEEEEEecCC
Confidence 577788777543322 2467899999999999743
No 58
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=67.49 E-value=11 Score=34.27 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=17.3
Q ss_pred eeeEeeeeeeEEEeeehhhh
Q 029958 116 SYIVRCCVKGSLLEVNNRLI 135 (185)
Q Consensus 116 ~~~I~spV~G~vvevN~~L~ 135 (185)
.+.|+||++|.|.+.|-+.-
T Consensus 209 ~~~I~AP~dGvV~~~~v~~G 228 (409)
T PRK09783 209 RFTLKAPIDGVITAFDLRAG 228 (409)
T ss_pred cEEEECCCCeEEEEEECCCC
Confidence 46899999999999987764
No 59
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=59.74 E-value=8.4 Score=35.54 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=26.7
Q ss_pred eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhhh
Q 029958 99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLI 135 (185)
Q Consensus 99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L~ 135 (185)
..|..|+.|+..+.. -...|.|||+|+|.+|++...
T Consensus 51 d~V~~Gq~i~~~~~~-~~~~~ha~vsG~V~~i~~~~~ 86 (435)
T TIGR01945 51 DKVLKGQKIAKADGF-VSAPIHAPTSGTVVAIEERVS 86 (435)
T ss_pred CEECCCCEeccCCCc-ceeeeecCCCeEEEEeccccc
Confidence 367888888876221 235799999999999997543
No 60
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=54.00 E-value=17 Score=36.35 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=31.9
Q ss_pred ccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeee
Q 029958 92 GKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVN 131 (185)
Q Consensus 92 gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN 131 (185)
-|.|+|+ .+++|++||.+.+-+-+..|-||.+|+|-.+.
T Consensus 1120 ikvk~G~-kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~ 1158 (1176)
T KOG0369|consen 1120 IKVKEGA-KVKKGQPLAVLSAMKMEMVISSPHAGTVKKVH 1158 (1176)
T ss_pred EEEecCc-eecCCCceEeeecceeeeeecCCCCceeeEEE
Confidence 3455554 88999999988888888899999999997764
No 61
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=52.48 E-value=39 Score=29.26 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=30.1
Q ss_pred ceEEeecCceEEEEec--CCeeeEeeeeeeEEEeeehhhh
Q 029958 98 AQHFESNTAVCKVCTN--NDSYIVRCCVKGSLLEVNNRLI 135 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~--~~~~~I~spV~G~vvevN~~L~ 135 (185)
+..|++|+.|++|... ....+++||.+|.|+.+.....
T Consensus 237 Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~~~~~ 276 (287)
T cd06251 237 GDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRNNLPL 276 (287)
T ss_pred CCEECCCCEEEEEECCCCCceEEEECCCCeEEEEecCCCc
Confidence 4578999999999643 3357899999999998776554
No 62
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=52.44 E-value=13 Score=34.71 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=23.6
Q ss_pred EEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958 100 HFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 100 ~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~ 132 (185)
.|..|++|+.-+.. -...+.|||+|+|.+|+.
T Consensus 50 ~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 50 KVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred EEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 57777777754321 236899999999999964
No 63
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=46.17 E-value=26 Score=30.62 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=24.4
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEee
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEV 130 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvev 130 (185)
+..|++|++|+.|.. .+|+||++|.|.-+
T Consensus 182 Gd~V~KGqvLa~I~~----~~V~APidGIVrGl 210 (256)
T TIGR03309 182 GDSVKKGDVIATVGD----VPVVAPIDGLLRGL 210 (256)
T ss_pred CCEEeCCCEEEEEcC----EEEEccCCeEEEEE
Confidence 457899999999954 57999999999865
No 64
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=46.01 E-value=20 Score=22.93 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=14.5
Q ss_pred eeEeeeeeeEEEeeehh
Q 029958 117 YIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 117 ~~I~spV~G~vvevN~~ 133 (185)
..|.+|++|+|.++|-.
T Consensus 3 ~~I~~~~~G~V~~v~V~ 19 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVK 19 (50)
T ss_pred EEEeCCCCEEEEEEEec
Confidence 46999999999999754
No 65
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=45.49 E-value=20 Score=33.52 Aligned_cols=30 Identities=7% Similarity=0.210 Sum_probs=23.3
Q ss_pred EEeecCceEEEEecCC-eeeEeeeeeeEEEeee
Q 029958 100 HFESNTAVCKVCTNND-SYIVRCCVKGSLLEVN 131 (185)
Q Consensus 100 ~l~~~~~l~~I~s~~~-~~~I~spV~G~vvevN 131 (185)
.|..|++|+.- .+. ...+.||++|+|.+|+
T Consensus 51 ~V~~Gq~I~~~--~~~~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 51 KVKKGQPLFED--KKNPGVKFTSPASGTVVAIN 81 (448)
T ss_pred EEcCCCEeEec--CCCceEEEEcCCCeEEEEEc
Confidence 67788888744 332 3689999999999996
No 66
>PF10830 DUF2553: Protein of unknown function (DUF2553); InterPro: IPR020140 This entry contains proteins with no known function.
Probab=42.82 E-value=71 Score=22.93 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=37.9
Q ss_pred CceeeccccccceEE-eecCceEEEE-ecCCeeeEeeeee---eEEEeeehhhhcCccccccCCCCCce
Q 029958 87 GFKVTGKRKKNAQHF-ESNTAVCKVC-TNNDSYIVRCCVK---GSLLEVNNRLIKQPGLLNSSADREGY 150 (185)
Q Consensus 87 ~~~v~gk~Kkg~~~l-~~~~~l~~I~-s~~~~~~I~spV~---G~vvevN~~L~~~P~Lln~~P~~~GW 150 (185)
.+.|.||-+-|...| ..+..|+++. ...+.|.+.+..+ |++-..=......+..--+-.++.||
T Consensus 7 Td~V~gkf~ng~l~LY~~~e~IG~~~~~~~~~y~L~~Gy~~e~~K~Yk~~d~~~~~~~kYvDCD~e~GW 75 (76)
T PF10830_consen 7 TDKVTGKFKNGGLELYHDNEMIGEIYMTEENQYELKHGYSFENGKFYKYADVTPQPDQKYVDCDYENGW 75 (76)
T ss_pred ecceEEEecCCcEEEEeccceeeeEccCCCceEEecCCceeeCCEEEEecccCCCCccceEeccccccc
Confidence 356899998887777 6888899973 3333788876654 55554433232222222223335677
No 67
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=41.68 E-value=27 Score=32.30 Aligned_cols=33 Identities=9% Similarity=0.146 Sum_probs=22.6
Q ss_pred EEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 100 HFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 100 ~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
.|.+|.+|++=+-.-+ ..+-||++|+|++||.-
T Consensus 50 ~VkkGq~LfEdKknpg-v~~Tap~sG~V~aI~RG 82 (447)
T COG1726 50 AVKKGQVLFEDKKNPG-VVFTAPVSGKVTAIHRG 82 (447)
T ss_pred eeeccceeeecccCCC-eEEeccCCceEEEeecc
Confidence 4566666665433322 35889999999999953
No 68
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=41.12 E-value=45 Score=28.83 Aligned_cols=41 Identities=15% Similarity=0.022 Sum_probs=30.7
Q ss_pred ccccceEEeecCceEEEEecCC--eeeEeeeeeeEEEeeehhh
Q 029958 94 RKKNAQHFESNTAVCKVCTNND--SYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 94 ~Kkg~~~l~~~~~l~~I~s~~~--~~~I~spV~G~vvevN~~L 134 (185)
.++-+..|++|++|++|...-+ ..+|+||.+|.|+.++...
T Consensus 237 ~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~~ 279 (288)
T cd06254 237 FVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTATL 279 (288)
T ss_pred ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCCC
Confidence 3445567889999999964322 5689999999999987653
No 69
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=40.97 E-value=29 Score=34.32 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=27.0
Q ss_pred EEeecCceEEEEecCC-eeeEeeeeeeEEEeeehhhhcCc
Q 029958 100 HFESNTAVCKVCTNND-SYIVRCCVKGSLLEVNNRLIKQP 138 (185)
Q Consensus 100 ~l~~~~~l~~I~s~~~-~~~I~spV~G~vvevN~~L~~~P 138 (185)
.|..|++|+.- .+. ...|.||++|+|++|+....-.|
T Consensus 58 ~V~~GQ~i~~~--~~~~s~~vhApvSG~V~~I~~~~~~h~ 95 (695)
T PRK05035 58 RVLKGQPLTQG--DGRMSLPVHAPTSGTVVAIEPHPTAHP 95 (695)
T ss_pred EEcCCCEeeec--CCCceeEEeCCCCeEEeeeccccccCC
Confidence 57778887743 343 36899999999999997654433
No 70
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=39.72 E-value=75 Score=27.61 Aligned_cols=35 Identities=6% Similarity=0.101 Sum_probs=27.7
Q ss_pred ceEEeecCceEEEEec--CCeeeEeeeeeeEEEeeeh
Q 029958 98 AQHFESNTAVCKVCTN--NDSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~--~~~~~I~spV~G~vvevN~ 132 (185)
+..|++|+.|++|... ....+++||.+|.|+..|.
T Consensus 249 G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~~r 285 (293)
T cd06255 249 GDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGIHR 285 (293)
T ss_pred CCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC
Confidence 4578999999999643 3356799999999999843
No 71
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=39.57 E-value=76 Score=28.26 Aligned_cols=37 Identities=11% Similarity=0.005 Sum_probs=29.4
Q ss_pred ceEEeecCceEEEEec---CC-eeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTN---ND-SYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~---~~-~~~I~spV~G~vvevN~~L 134 (185)
+..|++|+.|++|..- +. ..+|+||.+|.|+..+..-
T Consensus 273 G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~~~~ 313 (325)
T TIGR02994 273 GDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARHFPG 313 (325)
T ss_pred CCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEeCCC
Confidence 4578999999999653 22 5689999999999977543
No 72
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.95 E-value=66 Score=25.85 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=30.9
Q ss_pred EEeecCceEEEEecCC-eeeEeeeeeeEEEeeehhhhcCc
Q 029958 100 HFESNTAVCKVCTNND-SYIVRCCVKGSLLEVNNRLIKQP 138 (185)
Q Consensus 100 ~l~~~~~l~~I~s~~~-~~~I~spV~G~vvevN~~L~~~P 138 (185)
.+..|++|+.+.+.++ +.-+.+|+.|.++-+-+.-.+.|
T Consensus 112 RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~E~t~kRp 151 (161)
T COG4072 112 RVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYIDEFTNKRP 151 (161)
T ss_pred hhcCCCceeEEEecccceEEecCCCCcEEEEEeecccCCC
Confidence 5778999999977665 57899999999999988544444
No 73
>PF13437 HlyD_3: HlyD family secretion protein
Probab=36.53 E-value=24 Score=25.15 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=14.4
Q ss_pred eEeeeeeeEEEeeehhh
Q 029958 118 IVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 118 ~I~spV~G~vvevN~~L 134 (185)
.|+||++|.|..+|-..
T Consensus 1 ~i~AP~~G~V~~~~~~~ 17 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQP 17 (105)
T ss_pred CEECCCCEEEEEEeCCC
Confidence 48999999999998644
No 74
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=36.04 E-value=60 Score=28.50 Aligned_cols=40 Identities=8% Similarity=-0.010 Sum_probs=30.9
Q ss_pred cccceEEeecCceEEEEec---CC-eeeEeeeeeeEEEeeehhh
Q 029958 95 KKNAQHFESNTAVCKVCTN---ND-SYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 95 Kkg~~~l~~~~~l~~I~s~---~~-~~~I~spV~G~vvevN~~L 134 (185)
++-+..|++|+.|++|... ++ ..+|+||.+|.|+..+...
T Consensus 259 ~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~~~ 302 (316)
T cd06252 259 VDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRPPG 302 (316)
T ss_pred cCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeCCC
Confidence 3345688999999999654 22 5689999999999988654
No 75
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=35.04 E-value=37 Score=26.54 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=12.6
Q ss_pred eEeeeeeeEEEeeeh
Q 029958 118 IVRCCVKGSLLEVNN 132 (185)
Q Consensus 118 ~I~spV~G~vvevN~ 132 (185)
.|+||++|+|..+-+
T Consensus 41 ~v~AP~~G~v~~i~~ 55 (132)
T PF00358_consen 41 KVYAPVDGTVTMIFP 55 (132)
T ss_dssp EEEESSSEEEEEE-T
T ss_pred eEEEEeeEEEEEEcC
Confidence 499999999999875
No 76
>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C.
Probab=33.05 E-value=67 Score=19.85 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=18.0
Q ss_pred eecCceEEE---EecCCee----eEeeeeeeEEEeee
Q 029958 102 ESNTAVCKV---CTNNDSY----IVRCCVKGSLLEVN 131 (185)
Q Consensus 102 ~~~~~l~~I---~s~~~~~----~I~spV~G~vvevN 131 (185)
-+|+.|++. ....++| .|+|-+.|.+.-.|
T Consensus 3 ~PG~~l~~~~e~~~G~GTY~~~g~I~asv~G~v~~~n 39 (39)
T PF14382_consen 3 VPGDRLGSSEEYMPGHGTYVRDGNIYASVAGTVKIDN 39 (39)
T ss_dssp -TT-EEEETTTSEESTTEEEETTEEEESSSEEEEEET
T ss_pred CCCCEeecCCCEecCCCEEEeCCEEEEEeeEEEEEcC
Confidence 355556554 1233344 69999999987665
No 77
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=30.92 E-value=1.2e+02 Score=27.33 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=28.8
Q ss_pred ceEEeecCceEEEEecCC----eeeEeeeeeeEEEeeehhhh
Q 029958 98 AQHFESNTAVCKVCTNND----SYIVRCCVKGSLLEVNNRLI 135 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~----~~~I~spV~G~vvevN~~L~ 135 (185)
+..|++|+.|++|...-+ .+.|+||.+|.|+.++....
T Consensus 307 Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~~~~~ 348 (359)
T cd06250 307 GDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARASRRF 348 (359)
T ss_pred CCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEecCCcc
Confidence 457899999999964432 23459999999999886653
No 78
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=29.18 E-value=1.3e+02 Score=26.36 Aligned_cols=38 Identities=8% Similarity=0.112 Sum_probs=30.4
Q ss_pred ceEEeecCceEEEEec--CC-eeeEeeeeeeEEEeeehhhh
Q 029958 98 AQHFESNTAVCKVCTN--ND-SYIVRCCVKGSLLEVNNRLI 135 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~--~~-~~~I~spV~G~vvevN~~L~ 135 (185)
+..|++|+.|++|... +. .-+++||.+|.|+.++....
T Consensus 247 G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~~~p~ 287 (298)
T cd06253 247 GDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLREYPL 287 (298)
T ss_pred CCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEeecCCe
Confidence 3478999999999653 33 56899999999999887653
No 79
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=28.95 E-value=62 Score=18.82 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=12.7
Q ss_pred hccCCCHHHHHHHHh
Q 029958 165 KSSLLGLEDYKRKRE 179 (185)
Q Consensus 165 ~~~Lls~eeY~~~~~ 179 (185)
..+++|.++|.+.+.
T Consensus 13 ~~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 13 DKGEISEEEYEQKKA 27 (31)
T ss_pred HcCCCCHHHHHHHHH
Confidence 478999999998765
No 80
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=26.97 E-value=67 Score=24.74 Aligned_cols=15 Identities=20% Similarity=0.135 Sum_probs=12.7
Q ss_pred eEeeeeeeEEEeeeh
Q 029958 118 IVRCCVKGSLLEVNN 132 (185)
Q Consensus 118 ~I~spV~G~vvevN~ 132 (185)
.|+||++|+|..+-+
T Consensus 37 ~v~AP~~G~v~~v~~ 51 (121)
T TIGR00830 37 KVVAPVDGKIGKIFP 51 (121)
T ss_pred eEEccCCeEEEEEcc
Confidence 399999999998754
No 81
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=26.71 E-value=65 Score=30.99 Aligned_cols=40 Identities=10% Similarity=0.118 Sum_probs=30.2
Q ss_pred EEeecCceEEEEecCCeeeEeeeeeeEEEeeehhhhcCcccc
Q 029958 100 HFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLL 141 (185)
Q Consensus 100 ~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L~~~P~Ll 141 (185)
.|..|.+|+. .++..-.++||++|.|..+=....-+|+-+
T Consensus 54 ~V~~GQ~l~~--~~g~~~~vHaP~sG~V~~I~~~~~~~~sgl 93 (529)
T COG4656 54 KVLKGQPLTR--GEGIMLPVHAPTSGTVTAIEPANFPHPSGL 93 (529)
T ss_pred EEeeCceeec--cCCceeeeeCCCCceeeeeeecccCCcccC
Confidence 4666666653 355778999999999999987777776644
No 82
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=26.40 E-value=67 Score=24.83 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=12.9
Q ss_pred eEeeeeeeEEEeeeh
Q 029958 118 IVRCCVKGSLLEVNN 132 (185)
Q Consensus 118 ~I~spV~G~vvevN~ 132 (185)
.|+||++|+|..+-+
T Consensus 37 ~v~AP~~G~v~~i~~ 51 (124)
T cd00210 37 KVVAPVDGTIVQIFP 51 (124)
T ss_pred eEECcCCeEEEEEcc
Confidence 499999999998854
No 83
>COG3608 Predicted deacylase [General function prediction only]
Probab=26.19 E-value=75 Score=28.79 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=26.2
Q ss_pred EEeecCceEEEEec---CCeeeEeeeeeeEEEeee
Q 029958 100 HFESNTAVCKVCTN---NDSYIVRCCVKGSLLEVN 131 (185)
Q Consensus 100 ~l~~~~~l~~I~s~---~~~~~I~spV~G~vvevN 131 (185)
.|+.|+.|+.|... ....+|+|+++|.|+..-
T Consensus 276 ~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r 310 (331)
T COG3608 276 KVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR 310 (331)
T ss_pred cccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe
Confidence 68899999999653 345799999999999864
No 84
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=25.99 E-value=73 Score=29.51 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=41.0
Q ss_pred CEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 72 GITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 72 ~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
.++.+.+. .|.-.+ +-.|+-=-=|.+.+++.=++||+|.++++...|-|-.+|+|.-+--.+
T Consensus 63 gvv~f~LsdiGEGI~-Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ 125 (474)
T KOG0558|consen 63 GVVQFKLSDIGEGIA-EVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSP 125 (474)
T ss_pred ceEEEEhhhccccce-eeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCc
Confidence 35556665 554222 111222222334578888899999999999999999999998776544
No 85
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=25.58 E-value=68 Score=26.15 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=12.7
Q ss_pred eEeeeeeeEEEeeeh
Q 029958 118 IVRCCVKGSLLEVNN 132 (185)
Q Consensus 118 ~I~spV~G~vvevN~ 132 (185)
.|+||++|+|..+-+
T Consensus 59 ~v~AP~dG~V~~vf~ 73 (169)
T PRK09439 59 KMVAPVDGTIGKIFE 73 (169)
T ss_pred EEEecCCeEEEEEcC
Confidence 499999999998753
No 86
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=23.41 E-value=99 Score=28.29 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=31.2
Q ss_pred eeeeeEEEeeehhhh--cCccccccCCCCCceEEEEeCCccchhhhhccCCCHHHHHHHHhh
Q 029958 121 CCVKGSLLEVNNRLI--KQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREE 180 (185)
Q Consensus 121 spV~G~vvevN~~L~--~~P~Lln~~P~~~GWlaii~p~~~~~~~~~~~Lls~eeY~~~~~~ 180 (185)
+-|.|..||||.+=. .++.- .--||..||.....+ ..|.+.|.|.....+
T Consensus 159 t~VEGRkIEVn~ATarV~n~K~-~v~p~~~g~~~~~a~---------~al~~~e~~~q~~~l 210 (376)
T KOG0125|consen 159 TVVEGRKIEVNNATARVHNKKK-KVLPYPNGWKLLPAV---------GALYSAEPQAQRALL 210 (376)
T ss_pred ceeeceEEEEeccchhhccCCc-ccCCCccccccccch---------hhhhchhHHHHHHHH
Confidence 568899999996542 22221 113777899875443 446777777665444
No 87
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=22.73 E-value=1.3e+02 Score=24.63 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=11.8
Q ss_pred eEeeeeeeEEEee
Q 029958 118 IVRCCVKGSLLEV 130 (185)
Q Consensus 118 ~I~spV~G~vvev 130 (185)
.|.||.+|+|+.+
T Consensus 22 ~ivSPaDG~v~~~ 34 (202)
T PF02666_consen 22 AIVSPADGKVLVI 34 (202)
T ss_pred EEEeCcCcEEEee
Confidence 5999999999998
No 88
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=21.95 E-value=1.4e+02 Score=24.32 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=13.2
Q ss_pred eEeeeeeeEEEeeeh
Q 029958 118 IVRCCVKGSLLEVNN 132 (185)
Q Consensus 118 ~I~spV~G~vvevN~ 132 (185)
.|.||++|+|+++.+
T Consensus 36 ~ivSPaDG~v~~i~~ 50 (189)
T TIGR00164 36 AVLSPADGRIDVVER 50 (189)
T ss_pred EEEeCCCcEEEEEEe
Confidence 499999999999865
No 89
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=21.46 E-value=78 Score=22.21 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=14.0
Q ss_pred eEeeeeeeEEEeeeh
Q 029958 118 IVRCCVKGSLLEVNN 132 (185)
Q Consensus 118 ~I~spV~G~vvevN~ 132 (185)
+|+||.+|+|+.+..
T Consensus 15 ~V~A~~~G~V~~~~~ 29 (96)
T PF01551_consen 15 PVYAPADGKVVFVGE 29 (96)
T ss_dssp EEEESSSEEEEEEEE
T ss_pred EEEeCccEEEEEEEe
Confidence 699999999999987
No 90
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=20.98 E-value=89 Score=21.86 Aligned_cols=18 Identities=11% Similarity=0.387 Sum_probs=14.5
Q ss_pred ceEEeecCceEEEEecCC
Q 029958 98 AQHFESNTAVCKVCTNND 115 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~ 115 (185)
+..|+.|++||+|-+...
T Consensus 41 Gd~V~~Gd~l~~i~~~~~ 58 (75)
T PF07831_consen 41 GDRVEKGDPLATIYANDE 58 (75)
T ss_dssp TSEEBTTSEEEEEEESSS
T ss_pred cCEECCCCeEEEEEcCCh
Confidence 347999999999976654
No 91
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=20.21 E-value=67 Score=27.64 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=16.1
Q ss_pred eeeEeeeeeeEEEeeehhh
Q 029958 116 SYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 116 ~~~I~spV~G~vvevN~~L 134 (185)
.+.|+||++|.|.+++-..
T Consensus 204 ~~~I~AP~~G~V~~~~~~~ 222 (334)
T TIGR00998 204 RTVIRAPFDGYVARRFVQV 222 (334)
T ss_pred CcEEEcCCCcEEEEEecCC
Confidence 4689999999999998553
Done!