Query 029958
Match_columns 185
No_of_seqs 120 out of 1071
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 09:47:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3klr_A Glycine cleavage system 100.0 1.5E-32 5.1E-37 212.0 13.8 115 41-180 6-122 (125)
2 3hgb_A Glycine cleavage system 100.0 1.7E-32 5.8E-37 218.2 11.7 119 41-179 32-154 (155)
3 3tzu_A GCVH, glycine cleavage 100.0 2.8E-32 9.7E-37 213.4 8.9 114 41-179 17-135 (137)
4 3mxu_A Glycine cleavage system 100.0 1.3E-32 4.4E-37 216.5 6.1 113 41-178 28-142 (143)
5 3a7l_A H-protein, glycine clea 100.0 6.7E-30 2.3E-34 197.8 13.4 116 41-180 10-127 (128)
6 1onl_A Glycine cleavage system 100.0 3.3E-29 1.1E-33 193.9 13.2 116 41-181 10-127 (128)
7 1hpc_A H protein of the glycin 100.0 4.7E-29 1.6E-33 193.8 13.8 115 41-180 10-126 (131)
8 1zko_A Glycine cleavage system 100.0 1.7E-27 5.9E-32 186.1 14.2 115 41-180 19-135 (136)
9 2kcc_A Acetyl-COA carboxylase 96.9 0.0015 5E-08 45.6 4.9 35 99-134 25-59 (84)
10 1k8m_A E2 component of branche 96.8 0.0023 8E-08 45.6 5.8 37 98-134 29-65 (93)
11 1z6h_A Biotin/lipoyl attachmen 96.8 0.0017 5.8E-08 43.2 4.7 36 99-134 19-54 (72)
12 1qjo_A Dihydrolipoamide acetyl 96.7 0.0014 4.9E-08 44.7 4.1 37 98-134 25-61 (80)
13 1gjx_A Pyruvate dehydrogenase; 96.7 0.00049 1.7E-08 47.3 1.5 51 99-156 27-77 (81)
14 2l5t_A Lipoamide acyltransfera 96.7 0.001 3.5E-08 45.2 3.0 37 98-134 26-62 (77)
15 3crk_C Dihydrolipoyllysine-res 96.6 0.003 1E-07 44.1 4.9 37 98-134 30-66 (87)
16 1ghj_A E2, E2, the dihydrolipo 96.5 0.0063 2.2E-07 41.4 6.3 37 98-134 26-62 (79)
17 1dcz_A Transcarboxylase 1.3S s 96.4 0.0051 1.8E-07 41.4 5.1 34 99-132 28-61 (77)
18 2d5d_A Methylmalonyl-COA decar 96.4 0.0049 1.7E-07 40.9 4.7 35 98-132 24-58 (74)
19 1iyu_A E2P, dihydrolipoamide a 96.3 0.0046 1.6E-07 42.1 4.6 37 98-134 23-59 (79)
20 1y8o_B Dihydrolipoyllysine-res 96.1 0.016 5.5E-07 44.0 6.8 64 70-134 24-88 (128)
21 2dnc_A Pyruvate dehydrogenase 96.0 0.0081 2.8E-07 43.2 4.7 37 98-134 32-68 (98)
22 1bdo_A Acetyl-COA carboxylase; 95.9 0.0086 2.9E-07 40.7 4.3 36 98-133 30-65 (80)
23 2jku_A Propionyl-COA carboxyla 95.8 0.0033 1.1E-07 44.7 1.9 37 98-134 44-80 (94)
24 2ejm_A Methylcrotonoyl-COA car 95.6 0.014 4.9E-07 41.7 4.6 37 98-134 33-69 (99)
25 2k7v_A Dihydrolipoyllysine-res 95.6 0.001 3.4E-08 46.3 -1.6 38 98-135 21-58 (85)
26 2dne_A Dihydrolipoyllysine-res 95.6 0.01 3.4E-07 43.5 3.7 37 98-134 32-68 (108)
27 2dn8_A Acetyl-COA carboxylase 94.8 0.028 9.6E-07 40.1 4.0 34 98-132 36-69 (100)
28 1pmr_A Dihydrolipoyl succinylt 94.6 0.004 1.4E-07 42.7 -0.9 37 98-134 27-63 (80)
29 2k32_A A; NMR {Campylobacter j 92.3 0.088 3E-06 38.0 3.0 35 99-133 21-84 (116)
30 3n6r_A Propionyl-COA carboxyla 92.1 0.14 4.8E-06 48.3 4.8 39 95-133 628-666 (681)
31 3d4r_A Domain of unknown funct 91.9 0.25 8.5E-06 39.3 5.3 37 97-133 118-155 (169)
32 1zy8_K Pyruvate dehydrogenase 91.2 0.038 1.3E-06 45.7 0.0 35 98-132 28-62 (229)
33 3va7_A KLLA0E08119P; carboxyla 90.0 0.27 9.1E-06 49.6 4.7 39 95-133 1183-1221(1236)
34 3hbl_A Pyruvate carboxylase; T 89.5 0.31 1E-05 48.8 4.7 40 95-134 1093-1132(1150)
35 3dva_I Dihydrolipoyllysine-res 88.1 0.095 3.2E-06 47.0 0.0 36 98-133 27-62 (428)
36 3u9t_A MCC alpha, methylcroton 86.7 0.13 4.4E-06 48.5 0.0 37 97-133 620-656 (675)
37 3bg3_A Pyruvate carboxylase, m 80.4 0.55 1.9E-05 44.8 1.5 35 98-132 668-702 (718)
38 2qf7_A Pyruvate carboxylase pr 79.3 0.71 2.4E-05 46.2 1.9 36 98-133 1114-1149(1165)
39 3na6_A Succinylglutamate desuc 74.2 3.3 0.00011 35.4 4.5 39 94-132 271-313 (331)
40 3cdx_A Succinylglutamatedesucc 68.5 5.2 0.00018 34.3 4.5 37 96-132 283-323 (354)
41 3lnn_A Membrane fusion protein 65.3 5.7 0.0002 33.3 4.0 18 117-134 171-188 (359)
42 3fpp_A Macrolide-specific effl 65.1 3.7 0.00013 34.2 2.8 19 117-135 154-172 (341)
43 3ne5_B Cation efflux system pr 62.2 8.2 0.00028 33.6 4.6 19 116-134 207-225 (413)
44 2f1m_A Acriflavine resistance 61.8 1.8 6.2E-05 35.1 0.3 18 117-134 131-148 (277)
45 3fmc_A Putative succinylglutam 61.3 9.5 0.00033 33.1 4.8 37 98-134 308-350 (368)
46 1vf7_A Multidrug resistance pr 46.7 3.9 0.00013 34.9 -0.1 18 117-134 138-155 (369)
47 2qj8_A MLR6093 protein; struct 40.8 28 0.00097 29.2 4.4 36 97-132 274-313 (332)
48 2rqh_A G1 to S phase transitio 35.9 14 0.00047 20.3 1.0 13 10-22 2-14 (26)
49 4dk0_A Putative MACA; alpha-ha 35.6 3.6 0.00012 34.6 -2.1 19 117-135 155-173 (369)
50 2gpr_A Glucose-permease IIA co 27.4 31 0.0011 26.5 2.2 15 118-132 46-60 (154)
51 3our_B EIIA, phosphotransferas 26.4 37 0.0013 27.0 2.5 15 118-132 73-87 (183)
52 1ax3_A Iiaglc, glucose permeas 26.1 38 0.0013 26.2 2.5 14 118-131 51-64 (162)
53 1f3z_A EIIA-GLC, glucose-speci 25.7 39 0.0013 26.1 2.5 14 118-131 51-64 (161)
No 1
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=100.00 E-value=1.5e-32 Score=212.02 Aligned_cols=115 Identities=19% Similarity=0.371 Sum_probs=104.7
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+++|+|+... +++++||| |++||+++|+|+||++| +|. .++.|++||+|++.+....|
T Consensus 6 t~~HeWv~~e--~~~~~vGI--Td~Aq~~lGdiv~velp~vG~-----------------~v~~G~~~~~VES~K~~sdi 64 (125)
T 3klr_A 6 TEKHEWVTTE--NGVGTVGI--SNFAQEALGDVVYCSLPEVGT-----------------KLNKQEEFGALESVKAASEL 64 (125)
T ss_dssp CTTSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECCCTTC-----------------EECTTCEEEEEEESSCEEEE
T ss_pred CCCCEEEEEc--CCEEEEee--CHHHHhhCCCeEEEEeCCCCC-----------------EEcCCCEEEEEEEcceeeee
Confidence 4789999764 56999999 99999999999999999 876 69999999999999999999
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeC-CccchhhhhccCCCHHHHHHHHhh
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADWLKIKSSLLGLEDYKRKREE 180 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p-~~~~~~~~~~~Lls~eeY~~~~~~ 180 (185)
+||++|+|++||++|.++|+|||++||++|||+.+.+ +++++ +.||++++|.++.+.
T Consensus 65 ~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~~~~~e~----~~Ll~~~~Y~~~~~~ 122 (125)
T 3klr_A 65 YSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSNPSEL----DELMSEEAYEKYIKS 122 (125)
T ss_dssp ECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEESCGGGG----GGSBCHHHHHHHHHH
T ss_pred ecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEECCHHHH----HhcCCHHHHHHHHhh
Confidence 9999999999999999999999999999999996665 46666 889999999998753
No 2
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=99.98 E-value=1.7e-32 Score=218.20 Aligned_cols=119 Identities=20% Similarity=0.258 Sum_probs=105.1
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+++|+|+... .+|+++||| |++||+++|+|+||+|| +|+ .|+.|++||+|+|.++...|
T Consensus 32 t~~HeWv~~e-gdg~~~VGI--Td~Aq~~LGdIvfVeLP~vG~-----------------~v~~Gd~~~~VESvKa~sdi 91 (155)
T 3hgb_A 32 TAEHEWIRRS-GDDTVRVGI--TDYAQSALGDVVFVQLPVIGT-----------------AVTAGETFGEVESTKSVSDL 91 (155)
T ss_dssp CTTSEEEEEE-ETTEEEEEE--CHHHHHHHCSEEEEECCCTTC-----------------EECTTCEEEEEEESSCEEEE
T ss_pred CCCCEEEEEc-CCcEEEEee--CHHHHHhcCCeEEEEcCCCCC-----------------EEeCCCEEEEEEecceeeee
Confidence 4789999775 467999999 99999999999999999 876 68999999999999999999
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCCc---cchhhhhccCCCHHHHHHHHh
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKP---ADWLKIKSSLLGLEDYKRKRE 179 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~~---~~~~~~~~~Lls~eeY~~~~~ 179 (185)
+|||+|+|++||++|.++|+|||++||++|||+.+.+.. ++.....+.|||+++|.++.+
T Consensus 92 ~sPvsG~VvevN~~L~d~PeliN~dPyg~GWl~kik~~d~~~~~~~~el~~Ll~~~~Y~~~~~ 154 (155)
T 3hgb_A 92 YAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLDAEAYRGTLT 154 (155)
T ss_dssp ECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEECCTTTSCCHHHHHTTSBCHHHHHHHCC
T ss_pred ecCcceEEEEEhhhhhhChHhhccCCCCCcEEEEEEECCcccccchhHHHhCCCHHHHHHHhc
Confidence 999999999999999999999999999999999777752 111223388999999999864
No 3
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=99.97 E-value=2.8e-32 Score=213.35 Aligned_cols=114 Identities=18% Similarity=0.323 Sum_probs=103.7
Q ss_pred CCCccEEEEE----eCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCC
Q 029958 41 KPGHDQYVYR----HANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNND 115 (185)
Q Consensus 41 ~~~hd~~~~~----h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~ 115 (185)
+++|+|+... ..+++++||| |++||+++|+|+||+|| +|. .++.|++||+|++.+.
T Consensus 17 t~~HeWv~~~~~~~~e~~~~~VGI--Td~Aq~~lGdiv~VelP~vG~-----------------~v~~G~~~~~VES~K~ 77 (137)
T 3tzu_A 17 TADHEWIDIAPGAATPDGPVRVGI--TSVAVEALGDLVFVQLPEVGE-----------------TVSAGESCGEVESTKT 77 (137)
T ss_dssp CTTSEEESCCTTCCCCSSCEEEEE--CHHHHHHHCSEEEEECCCTTC-----------------EECTTSEEEEEEESSE
T ss_pred CCCCEEEEccCcccccCCEEEEee--CHHHHhhcCCeEEEEcCCCCC-----------------EEeCCCEEEEEEecce
Confidence 4789998632 3467999999 99999999999999999 876 6999999999999999
Q ss_pred eeeEeeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCCccchhhhhccCCCHHHHHHHHh
Q 029958 116 SYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKRE 179 (185)
Q Consensus 116 ~~~I~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~~~~~~~~~~~Lls~eeY~~~~~ 179 (185)
..+|+|||+|+|++||++|.++|+|||++||++|||+.+.+. ++ +.||++++|.++.+
T Consensus 78 ~sdi~sPvsG~VvevN~~l~~~P~liN~dPy~~GWl~ki~~~--e~----~~Ll~~~~Y~~~~~ 135 (137)
T 3tzu_A 78 VSDLIAPASGQIVEVNTAAVDDPATIATDPYGAGWLYSVQPT--AV----GELLTASEYAGQNG 135 (137)
T ss_dssp EEEEECSEEEEEEEECHHHHHCTHHHHHCTTTTTCCEEEEEE--EE----CCCBCHHHHHHHTT
T ss_pred eeeeecCcceEEEEehhhhhcChhhhcCCCCcCCcEEEEEeh--hh----hhCCCHHHHHHHhc
Confidence 999999999999999999999999999999999999988775 55 88999999999864
No 4
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=99.97 E-value=1.3e-32 Score=216.49 Aligned_cols=113 Identities=21% Similarity=0.333 Sum_probs=102.5
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+++|+|+... +++++||| |++||+++|+|+||+|| +|. .++.|++||+|++.+...+|
T Consensus 28 t~~HeWv~~e--g~~~~VGI--Td~Aq~~LGdIvfVelP~vG~-----------------~v~~Gd~~~~VES~Ka~sdi 86 (143)
T 3mxu_A 28 TQDHEWLSVE--GQVVTVGI--TDYAQEQLGDLVFIDLPQNGT-----------------KLSKGDAAAVVESVKAASDV 86 (143)
T ss_dssp CSSSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECCCTTC-----------------EECTTCEEEEEEESSCEEEE
T ss_pred CCCCEEEEEc--CCEEEEee--CHHHHhhcCCeEEEEcCCCCC-----------------EeeCCCEEEEEEecceeeee
Confidence 3689999764 45999999 99999999999999999 876 69999999999999999999
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHH
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKR 178 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~ 178 (185)
+|||+|+|++||++|.++|+|||++||++|||+.+.+. ++++ +.|||+++|.++.
T Consensus 87 ~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl~ki~~~d~~el----~~Ll~~~~Y~~~~ 142 (143)
T 3mxu_A 87 YAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTVQDETQL----ERLLDEAAYKELI 142 (143)
T ss_dssp ECSSSEEEEEECGGGGTCTTHHHHSTTTTTCCEEEECSCTHHH----HHHHHTTSSEECC
T ss_pred ecCcceEEEEEhhhhhhChHhhhCCCCCCCeEEEEEECCHHHH----HhcCCHHHHHHHh
Confidence 99999999999999999999999999999999977764 5556 7899999998753
No 5
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=99.97 E-value=6.7e-30 Score=197.77 Aligned_cols=116 Identities=24% Similarity=0.322 Sum_probs=105.2
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+++|+|+.. +.||+++||| |+++|.++|+|++|++| +|. .|+.|++||+|++.+...+|
T Consensus 10 t~~heWv~~-~~~g~~~vGi--td~a~~~lG~i~~v~lp~vG~-----------------~V~~g~~l~~vEs~K~~~~i 69 (128)
T 3a7l_A 10 SKEHEWLRK-EADGTYTVGI--TEHAQELLGDMVFVDLPEVGA-----------------TVSAGDDCAVAESVKAASDI 69 (128)
T ss_dssp CTTSEEEEE-CTTSCEEEEE--CHHHHHHHCSEEEEECCCTTC-----------------EECTTCEEEEEEESSCEEEE
T ss_pred cCCcEEEEE-CCCcEEEEEE--ehHHhccCCceEEEEecCCCC-----------------EEeCCCEEEEEEecceeeEE
Confidence 468999875 4578999999 99999999999999998 775 69999999999999999999
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHhh
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKREE 180 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~~~ 180 (185)
+||++|+|++||.+|.++|+++|++||++|||+.+.+. ++++ +.||++++|.++.+.
T Consensus 70 ~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~~~~~~----~~Ll~~~~Y~~~~~~ 127 (128)
T 3a7l_A 70 YAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESEL----ESLLDATAYEALLED 127 (128)
T ss_dssp ECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESCGGGG----GGCBCHHHHHHHHHT
T ss_pred ecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEECCHHHH----HhcCCHHHHHHHHhc
Confidence 99999999999999999999999999999999977664 5566 889999999998763
No 6
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=99.96 E-value=3.3e-29 Score=193.94 Aligned_cols=116 Identities=27% Similarity=0.355 Sum_probs=104.8
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+++|.|+... +++++||| |+++|.++|+|++|++| +|. .++.|++||+|++.+...+|
T Consensus 10 t~~heWv~~~--~~~~~vGi--t~~a~~~lG~i~~v~lp~vG~-----------------~V~~g~~l~~vEs~K~~~~i 68 (128)
T 1onl_A 10 TKTHEWALPE--GDTVLVGI--TDYAQDALGDVVYVELPEVGR-----------------VVEKGEAVAVVESVKTASDI 68 (128)
T ss_dssp CTTSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECBCTTC-----------------EECTTCEEEEEEESSBEEEE
T ss_pred CCCcEEEEec--CCEEEEEe--ehHHhhcCCCceEEEecCCCC-----------------EEeCCCEEEEEEEcceeeEE
Confidence 4789998765 34999999 99999999999999998 776 79999999999999999999
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHhhh
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKREEC 181 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~~~~ 181 (185)
+||++|+|++||.+|.++|+++|++||++|||+.+.+. ++++ +.||++++|.++.+..
T Consensus 69 ~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~~~~----~~Ll~~~~Y~~~~~~~ 127 (128)
T 1onl_A 69 YAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDMGDL----DELLDAGGYQEVLESE 127 (128)
T ss_dssp ECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESCGGGG----GGSBCHHHHHHHHHHT
T ss_pred ecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECCHHHH----HhcCCHHHHHHHHhcc
Confidence 99999999999999999999999999999999976664 5566 8899999999987653
No 7
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=99.96 E-value=4.7e-29 Score=193.76 Aligned_cols=115 Identities=29% Similarity=0.456 Sum_probs=104.6
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+++|.|+... +++++||| |+++|.++|+|++|++| +|. .|+.|++||+|++.+...+|
T Consensus 10 t~~HeWv~~e--~~~~~vGi--td~a~~~lG~i~~v~lp~~G~-----------------~V~~g~~l~~vEs~K~~~~I 68 (131)
T 1hpc_A 10 APSHEWVKHE--GSVATIGI--TDHAQDHLGEVVFVELPEPGV-----------------SVTKGKGFGAVESVKATSDV 68 (131)
T ss_dssp CTTSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECCCTTC-----------------EECBTSEEEEEEESSCEEEE
T ss_pred CCCCEEEEEc--CCEEEEEE--ehhhcccCCCceEEEecCCCC-----------------EEeCCCEEEEEEecceeEEE
Confidence 4789999765 57999999 99999999999999997 775 79999999999999999999
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeC-CccchhhhhccCCCHHHHHHHHhh
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADWLKIKSSLLGLEDYKRKREE 180 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p-~~~~~~~~~~~Lls~eeY~~~~~~ 180 (185)
+||++|+|++||..|.++|++||++||++|||+.+.+ +++++ +.||++++|.++.+.
T Consensus 69 ~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~~~~----~~Ll~~~~Y~~~~~~ 126 (131)
T 1hpc_A 69 NSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDEL----ESLLGAKEYTKFCEE 126 (131)
T ss_dssp EBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESSGGGG----GGSBCHHHHHHHHHH
T ss_pred ecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEECCHHHH----HhcCCHHHHHHHHhh
Confidence 9999999999999999999999999999999997665 45666 889999999998763
No 8
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=99.95 E-value=1.7e-27 Score=186.07 Aligned_cols=115 Identities=21% Similarity=0.361 Sum_probs=104.4
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+++|.|+... +++++||| |++++..+|+|++|++| +|. .|+.|++||.|++.+...+|
T Consensus 19 t~~HeWv~~e--~~~~~vGi--t~~a~~~lG~i~~V~lp~vGd-----------------~V~~Gd~l~~VEs~K~~~eI 77 (136)
T 1zko_A 19 TKTHEWVSIE--DKVATVGI--TNHAQEQLGDVVYVDLPEVGR-----------------EVKKGEVVASIESVKAAADV 77 (136)
T ss_dssp CTTSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECCCTTC-----------------EECTTCEEEEEEESSCEEEE
T ss_pred CCCCEEEEec--CCEEEEee--EhhhcccCCCcEEEEecCCCC-----------------EEeCCCEEEEEEEccEeEEE
Confidence 4789999765 56999999 99999999999999997 775 79999999999999999999
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHhh
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKREE 180 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~~~ 180 (185)
+||++|+|++||.+|.++|+++|++||++|||+.+.+. ++++ ++||++++|.++.+.
T Consensus 78 ~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~~~~~----~~Ll~~~~Y~~~~~~ 135 (136)
T 1zko_A 78 YAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISDEGEL----EDLLDEQAYQEFCAQ 135 (136)
T ss_dssp ECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESCGGGG----GGSBCHHHHHHHHHC
T ss_pred ecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECCHHHH----HhCCCHHHHHHHHhc
Confidence 99999999999999999999999999999999977664 5556 889999999998763
No 9
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=96.86 E-value=0.0015 Score=45.59 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=32.1
Q ss_pred eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
..+++|++|+.|++.+....|+||++|.|.+++ ..
T Consensus 25 d~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~ 59 (84)
T 2kcc_A 25 GHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RP 59 (84)
T ss_dssp EEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CT
T ss_pred CEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CC
Confidence 479999999999999999999999999999988 55
No 10
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=96.81 E-value=0.0023 Score=45.57 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=33.4
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..+++|++||.|++.+....|+||.+|.|.+++-..
T Consensus 29 Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~ 65 (93)
T 1k8m_A 29 GDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNL 65 (93)
T ss_dssp TCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCS
T ss_pred cCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCC
Confidence 4589999999999999999999999999999988654
No 11
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=96.79 E-value=0.0017 Score=43.15 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=31.4
Q ss_pred eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
..+++|++|+++++.+....|+||++|.|.++|-..
T Consensus 19 ~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~ 54 (72)
T 1z6h_A 19 DQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKE 54 (72)
T ss_dssp CEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCT
T ss_pred CEECCCCEEEEEECCccEEEEECCCCcEEEEEecCC
Confidence 378999999999998888999999999999987433
No 12
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=96.74 E-value=0.0014 Score=44.67 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=33.0
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..++.|++|+++++.+....|+||++|.|.++|-..
T Consensus 25 G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~ 61 (80)
T 1qjo_A 25 GDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNV 61 (80)
T ss_dssp TCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCT
T ss_pred CCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCC
Confidence 4489999999999999989999999999999988544
No 13
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=96.71 E-value=0.00049 Score=47.25 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=40.4
Q ss_pred eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeC
Q 029958 99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP 156 (185)
Q Consensus 99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p 156 (185)
..+++|++|+.+++.+....|+||++|.|.++|-..-+.. ....||+.+.+
T Consensus 27 d~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v-------~~g~~l~~i~~ 77 (81)
T 1gjx_A 27 DTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKI-------SEGGLIVVVEA 77 (81)
T ss_dssp CBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEE-------CSSSCCCEECC
T ss_pred CEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEe-------CCCCEEEEEEe
Confidence 3689999999999999999999999999999987664332 22357776654
No 14
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=96.69 E-value=0.001 Score=45.18 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=33.1
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..+++|++|+.+++.+....|+||++|.|.++|-..
T Consensus 26 G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~ 62 (77)
T 2l5t_A 26 GDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYRE 62 (77)
T ss_dssp TCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCT
T ss_pred CCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCC
Confidence 4579999999999999999999999999999988654
No 15
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=96.57 E-value=0.003 Score=44.09 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=33.0
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..++.|++||.|++.+....|+||.+|.|.+++-.-
T Consensus 30 Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~ 66 (87)
T 3crk_C 30 GEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPE 66 (87)
T ss_dssp TCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCT
T ss_pred CCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECC
Confidence 4579999999999999999999999999999987544
No 16
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=96.54 E-value=0.0063 Score=41.39 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=33.3
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..+++|++|+.+++.+....|+||++|.|.++|-..
T Consensus 26 Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~ 62 (79)
T 1ghj_A 26 GEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62 (79)
T ss_dssp TSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCT
T ss_pred CCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCC
Confidence 4589999999999999999999999999999988654
No 17
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=96.42 E-value=0.0051 Score=41.35 Aligned_cols=34 Identities=9% Similarity=0.014 Sum_probs=30.4
Q ss_pred eEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958 99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~ 132 (185)
..+++|++|+++.+.+....|+||++|.|.++|-
T Consensus 28 ~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~ 61 (77)
T 1dcz_A 28 DTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLV 61 (77)
T ss_dssp CEECTTSEEEEEEETTEEEEEECSSSEEEEEECC
T ss_pred CEEcCCCEEEEEEccceeEEEECCCCEEEEEEec
Confidence 3789999999999888788999999999999873
No 18
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=96.35 E-value=0.0049 Score=40.90 Aligned_cols=35 Identities=3% Similarity=-0.060 Sum_probs=31.0
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~ 132 (185)
+..+++|++|+++++.+....|+||++|.|.++|-
T Consensus 24 G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~ 58 (74)
T 2d5d_A 24 GDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILV 58 (74)
T ss_dssp TCEECTTCEEEEEEETTEEEEEECSSSEEEEEECC
T ss_pred CCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEc
Confidence 34789999999999988888999999999998873
No 19
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=96.35 E-value=0.0046 Score=42.09 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=32.8
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..+++|++|+++++.+....|+||++|.|.++|-..
T Consensus 23 Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~ 59 (79)
T 1iyu_A 23 GDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59 (79)
T ss_dssp TCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCT
T ss_pred CCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCC
Confidence 4478999999999999999999999999999998544
No 20
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=96.06 E-value=0.016 Score=44.00 Aligned_cols=64 Identities=9% Similarity=0.014 Sum_probs=46.7
Q ss_pred CCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 70 EGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 70 lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+-.+..|.+| .|.....+.-++=.+|. +..|+.|++||.|++.+....|.||.+|.|.+++-.-
T Consensus 24 ~p~~~~i~~P~lG~~~~~G~V~~~~V~~-Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~ 88 (128)
T 1y8o_B 24 YPPHMQVLLPALSPTMTMGTVQRWEKKV-GEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 88 (128)
T ss_dssp CCSEEEEECCCSSTTCSEEEEEEECSCT-TCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCT
T ss_pred CCcceeEEcCCCCCCcccEEEEEEecCC-CCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCC
Confidence 4445667777 66544334333333444 5689999999999999999999999999999987544
No 21
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.02 E-value=0.0081 Score=43.19 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=32.6
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..++.|++||.|++.+....|.||.+|.|.+++-.-
T Consensus 32 Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~ 68 (98)
T 2dnc_A 32 GEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 68 (98)
T ss_dssp TCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCT
T ss_pred CCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCC
Confidence 4579999999999999999999999999999876543
No 22
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=95.94 E-value=0.0086 Score=40.74 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=32.3
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
+..+++|+.|+.+++.+....|+||++|.|.++|-.
T Consensus 30 G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~ 65 (80)
T 1bdo_A 30 GQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVE 65 (80)
T ss_dssp TCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSC
T ss_pred cCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcC
Confidence 558999999999999988899999999999998843
No 23
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=95.84 E-value=0.0033 Score=44.73 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=12.9
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..+++|++|+++++.+....|+||++|.|.++|-..
T Consensus 44 Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~ 80 (94)
T 2jku_A 44 GDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQA 80 (94)
T ss_dssp TCCCCTTCCCEEEEC----------------------
T ss_pred CCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCC
Confidence 3478999999999998888999999999999887543
No 24
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=95.62 E-value=0.014 Score=41.66 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=32.4
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..|++|++|+++++.+....|+||++|.|.++|-..
T Consensus 33 Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~ 69 (99)
T 2ejm_A 33 GDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYRE 69 (99)
T ss_dssp TEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCT
T ss_pred CCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCC
Confidence 3479999999999998888999999999999988443
No 25
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=95.60 E-value=0.001 Score=46.34 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=33.5
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLI 135 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L~ 135 (185)
+..++.|++|+.|++.+....|+||++|.|.++|-..-
T Consensus 21 Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G 58 (85)
T 2k7v_A 21 GDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVG 58 (85)
T ss_dssp SCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTT
T ss_pred CCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCC
Confidence 34789999999999999999999999999999987654
No 26
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=95.58 E-value=0.01 Score=43.55 Aligned_cols=37 Identities=5% Similarity=0.015 Sum_probs=32.7
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..|+.|++||.|++.+....|.||.+|.|.+++-..
T Consensus 32 Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~ 68 (108)
T 2dne_A 32 GDKINEGDLIAEVETDKATVGFESLEECYMAKILVAE 68 (108)
T ss_dssp TCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCT
T ss_pred CCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCC
Confidence 4589999999999999999999999999999876433
No 27
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.80 E-value=0.028 Score=40.09 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=30.3
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~ 132 (185)
+..+++|++|+.+++.+....|+||.+|.|. ++-
T Consensus 36 Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v 69 (100)
T 2dn8_A 36 GGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIK 69 (100)
T ss_dssp TEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECS
T ss_pred cCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEe
Confidence 4479999999999999988999999999998 763
No 28
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=94.61 E-value=0.004 Score=42.66 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=32.4
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
+..+++|++||.+++.+....|+||++|.|.+++-..
T Consensus 27 Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~ 63 (80)
T 1pmr_A 27 GDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63 (80)
T ss_dssp TCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCT
T ss_pred cCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCC
Confidence 4578999999999999999999999999999877543
No 29
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=92.29 E-value=0.088 Score=38.00 Aligned_cols=35 Identities=3% Similarity=0.087 Sum_probs=28.0
Q ss_pred eEEeecCceEEEEecCC-----------------------------eeeEeeeeeeEEEeeehh
Q 029958 99 QHFESNTAVCKVCTNND-----------------------------SYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 99 ~~l~~~~~l~~I~s~~~-----------------------------~~~I~spV~G~vvevN~~ 133 (185)
..|++|++|+++.+... ...|+||++|.|.++|-.
T Consensus 21 ~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~ 84 (116)
T 2k32_A 21 DKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVN 84 (116)
T ss_dssp SEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCC
T ss_pred CEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECC
Confidence 37899999999976533 358999999999988653
No 30
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=92.07 E-value=0.14 Score=48.28 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=34.4
Q ss_pred cccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 95 KKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 95 Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
.+-+..|+.|++|+.|++.+-+.+|.||.+|+|.+++-.
T Consensus 628 v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~ 666 (681)
T 3n6r_A 628 VEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINAS 666 (681)
T ss_dssp CCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCC
T ss_pred eCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeC
Confidence 344678999999999999999999999999999998744
No 31
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=91.86 E-value=0.25 Score=39.30 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=32.3
Q ss_pred cceEEeecCceEEEEecCCe-eeEeeeeeeEEEeeehh
Q 029958 97 NAQHFESNTAVCKVCTNNDS-YIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 97 g~~~l~~~~~l~~I~s~~~~-~~I~spV~G~vvevN~~ 133 (185)
-+-.|..|+.|+.|.+.++. --|+||++|.|+.||+.
T Consensus 118 ~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~ 155 (169)
T 3d4r_A 118 FGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI 155 (169)
T ss_dssp CSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred cCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence 35578999999999888775 69999999999999976
No 32
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=91.24 E-value=0.038 Score=45.72 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=0.0
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~ 132 (185)
+..|+.|++||+|++.+....|.||.+|.|.+++-
T Consensus 28 Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v 62 (229)
T 1zy8_K 28 GEAVSAGDALCEIETDKAVVTLDASDDGILAKIVV 62 (229)
T ss_dssp -----------------------------------
T ss_pred CCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEe
Confidence 45799999999999999999999999999876653
No 33
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=89.96 E-value=0.27 Score=49.62 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=34.2
Q ss_pred cccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 95 KKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 95 Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
++-+..|+.|++||.|++.|.+.+|.||++|+|.+++-.
T Consensus 1183 v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~ 1221 (1236)
T 3va7_A 1183 AAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHK 1221 (1236)
T ss_dssp SCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCC
T ss_pred cCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeC
Confidence 334568999999999999999999999999999998643
No 34
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=89.52 E-value=0.31 Score=48.77 Aligned_cols=40 Identities=8% Similarity=0.030 Sum_probs=34.8
Q ss_pred cccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 95 KKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 95 Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
.+-+..|++|++||.|++.+.+.+|.||++|+|.+++-.-
T Consensus 1093 v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~ 1132 (1150)
T 3hbl_A 1093 VSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNN 1132 (1150)
T ss_dssp CCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCT
T ss_pred eCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCC
Confidence 3446789999999999999999999999999999987543
No 35
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=88.09 E-value=0.095 Score=46.99 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=0.0
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
+..|+.|++||+|++.+.+.+|.||.+|+|.++.-.
T Consensus 27 Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~ 62 (428)
T 3dva_I 27 GDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVP 62 (428)
T ss_dssp ------------------------------------
T ss_pred CCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeC
Confidence 347999999999999999999999999999776544
No 36
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=86.72 E-value=0.13 Score=48.52 Aligned_cols=37 Identities=11% Similarity=0.058 Sum_probs=0.0
Q ss_pred cceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 97 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 97 g~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
-+..|+.|++||.|++.+.+.+|.||.+|+|.+++-.
T Consensus 620 ~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~ 656 (675)
T 3u9t_A 620 PGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCS 656 (675)
T ss_dssp -------------------------------------
T ss_pred CCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeC
Confidence 3568999999999999999999999999999988654
No 37
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=80.43 E-value=0.55 Score=44.82 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=31.5
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~ 132 (185)
+..|++|++|+.|++.+-+..|.||.+|+|.+++-
T Consensus 668 Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v 702 (718)
T 3bg3_A 668 GAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHV 702 (718)
T ss_dssp TCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCC
T ss_pred CCeeCCCCEEEEEecccceeEEecCCCeEEEEEec
Confidence 56899999999999999999999999999987763
No 38
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=79.27 E-value=0.71 Score=46.18 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=26.7
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
+..|++|++|+.|++.+.+..|.||.+|+|.+++-.
T Consensus 1114 Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~ 1149 (1165)
T 2qf7_A 1114 GQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVK 1149 (1165)
T ss_dssp CCCC---CEEEEEEC---CEEEECCSSCCCCEECCC
T ss_pred cCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeC
Confidence 568899999999999999999999999999988754
No 39
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=74.16 E-value=3.3 Score=35.43 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=32.0
Q ss_pred ccccceEEeecCceEEEEec---C-CeeeEeeeeeeEEEeeeh
Q 029958 94 RKKNAQHFESNTAVCKVCTN---N-DSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 94 ~Kkg~~~l~~~~~l~~I~s~---~-~~~~I~spV~G~vvevN~ 132 (185)
..+.+..|++|++|++|... + ...+|+||.+|.|+..+.
T Consensus 271 ~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~ 313 (331)
T 3na6_A 271 MIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF 313 (331)
T ss_dssp SSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC
T ss_pred cCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC
Confidence 34566788999999999864 3 358999999999999876
No 40
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=68.49 E-value=5.2 Score=34.34 Aligned_cols=37 Identities=3% Similarity=-0.129 Sum_probs=30.6
Q ss_pred ccceEEeecCceEEEEec----CCeeeEeeeeeeEEEeeeh
Q 029958 96 KNAQHFESNTAVCKVCTN----NDSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 96 kg~~~l~~~~~l~~I~s~----~~~~~I~spV~G~vvevN~ 132 (185)
+.+..|++|++|+.|... +...+|+||.+|.|+..+.
T Consensus 283 ~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~~ 323 (354)
T 3cdx_A 283 YVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAG 323 (354)
T ss_dssp CTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEEC
T ss_pred CCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEeC
Confidence 456789999999999874 3358999999999998873
No 41
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=65.31 E-value=5.7 Score=33.27 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=15.8
Q ss_pred eeEeeeeeeEEEeeehhh
Q 029958 117 YIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 117 ~~I~spV~G~vvevN~~L 134 (185)
..|+||++|.|.++|-..
T Consensus 171 ~~i~AP~~G~V~~~~~~~ 188 (359)
T 3lnn_A 171 LAVRSPINGRVVDLNAAT 188 (359)
T ss_dssp EEEECSSCEEEEECCCCB
T ss_pred EEEECCCCEEEEEeecCC
Confidence 579999999999998655
No 42
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=65.07 E-value=3.7 Score=34.17 Aligned_cols=19 Identities=5% Similarity=0.006 Sum_probs=16.1
Q ss_pred eeEeeeeeeEEEeeehhhh
Q 029958 117 YIVRCCVKGSLLEVNNRLI 135 (185)
Q Consensus 117 ~~I~spV~G~vvevN~~L~ 135 (185)
..|+||++|.|.++|-..-
T Consensus 154 ~~i~AP~~G~V~~~~~~~G 172 (341)
T 3fpp_A 154 TRIVAPMAGEVTQITTLQG 172 (341)
T ss_dssp SEEECSSSEEEEEESSCTT
T ss_pred CEEECCCCeEEEEEecCCC
Confidence 5699999999999986554
No 43
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=62.23 E-value=8.2 Score=33.55 Aligned_cols=19 Identities=11% Similarity=0.347 Sum_probs=16.3
Q ss_pred eeeEeeeeeeEEEeeehhh
Q 029958 116 SYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 116 ~~~I~spV~G~vvevN~~L 134 (185)
.+.|+||++|.|.++|-..
T Consensus 207 ~~~I~AP~~G~V~~~~v~~ 225 (413)
T 3ne5_B 207 RFTLKAPIDGVITAFDLRA 225 (413)
T ss_dssp EEEEECSSSEEEEECCCCT
T ss_pred cEEEEcCCCeEEEEEEcCC
Confidence 4699999999999998654
No 44
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=61.83 E-value=1.8 Score=35.08 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=15.1
Q ss_pred eeEeeeeeeEEEeeehhh
Q 029958 117 YIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 117 ~~I~spV~G~vvevN~~L 134 (185)
..|+||++|.|..+|-..
T Consensus 131 ~~I~AP~~G~V~~~~~~~ 148 (277)
T 2f1m_A 131 TKVTSPISGRIGKSNVTE 148 (277)
T ss_dssp TEECCSSCEEECCCSSCB
T ss_pred CEEECCCCeEEEeEEcCC
Confidence 489999999999987544
No 45
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=61.33 E-value=9.5 Score=33.10 Aligned_cols=37 Identities=5% Similarity=0.020 Sum_probs=30.6
Q ss_pred ceEEeecCceEEEEe--c----CCeeeEeeeeeeEEEeeehhh
Q 029958 98 AQHFESNTAVCKVCT--N----NDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s--~----~~~~~I~spV~G~vvevN~~L 134 (185)
+..|++|++|++|.. . ....+|+||.+|.|+..+..-
T Consensus 308 Gd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~~p 350 (368)
T 3fmc_A 308 GVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFASA 350 (368)
T ss_dssp TCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSSS
T ss_pred CCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeCCC
Confidence 347899999999987 3 346899999999999998763
No 46
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=46.74 E-value=3.9 Score=34.87 Aligned_cols=18 Identities=11% Similarity=-0.070 Sum_probs=15.0
Q ss_pred eeEeeeeeeEEEeeehhh
Q 029958 117 YIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 117 ~~I~spV~G~vvevN~~L 134 (185)
..|+||++|.|.++|-..
T Consensus 138 ~~I~AP~~G~V~~~~v~~ 155 (369)
T 1vf7_A 138 TKVLSPISGRIGRSAVTE 155 (369)
T ss_dssp TEEECSSSEEECCCSSCB
T ss_pred CEEECCCCeEEEEEEcCC
Confidence 489999999999887543
No 47
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=40.84 E-value=28 Score=29.22 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=29.4
Q ss_pred cceEEeecCceEEEEec----CCeeeEeeeeeeEEEeeeh
Q 029958 97 NAQHFESNTAVCKVCTN----NDSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 97 g~~~l~~~~~l~~I~s~----~~~~~I~spV~G~vvevN~ 132 (185)
.+..|++|+.|++|... ....+|+||.+|.|+..+.
T Consensus 274 ~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~~ 313 (332)
T 2qj8_A 274 VMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIRS 313 (332)
T ss_dssp TTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEEC
T ss_pred CCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEeC
Confidence 46688999999999653 2357899999999999984
No 48
>2rqh_A G1 to S phase transition 1; protein-protein complex, GTP-binding, nucleotide-binding, Al splicing, cytoplasm, methylation, mRNA processing; NMR {Mus musculus}
Probab=35.86 E-value=14 Score=20.27 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=10.0
Q ss_pred hhhccccCCCCCC
Q 029958 10 KLLLPNVHDLPLT 22 (185)
Q Consensus 10 ~~~~~~~~~~~~~ 22 (185)
|||+|++++..-.
T Consensus 2 KPFVPnv~a~eFv 14 (26)
T 2rqh_A 2 KPFVPNVHAAEFV 14 (26)
T ss_dssp CSSCCCTTCCCSS
T ss_pred CCccCcchHHHhh
Confidence 8999999976543
No 49
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=35.58 E-value=3.6 Score=34.62 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=15.6
Q ss_pred eeEeeeeeeEEEeeehhhh
Q 029958 117 YIVRCCVKGSLLEVNNRLI 135 (185)
Q Consensus 117 ~~I~spV~G~vvevN~~L~ 135 (185)
..|+||++|.|.++|-..-
T Consensus 155 ~~i~AP~~G~V~~~~~~~G 173 (369)
T 4dk0_A 155 TKITSPIDGTVISTPVSEG 173 (369)
T ss_dssp SSCCCSCCSCCCBCCCCTT
T ss_pred CEEECCCCeEEEEeeCCCC
Confidence 3599999999999886543
No 50
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=27.44 E-value=31 Score=26.49 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=13.1
Q ss_pred eEeeeeeeEEEeeeh
Q 029958 118 IVRCCVKGSLLEVNN 132 (185)
Q Consensus 118 ~I~spV~G~vvevN~ 132 (185)
.++||++|+|..+-+
T Consensus 46 ~v~AP~~G~V~~v~~ 60 (154)
T 2gpr_A 46 DFHAPVSGKLVTAFP 60 (154)
T ss_dssp EEECSSCEEEEECCT
T ss_pred cEECCCCeEEEEEcc
Confidence 599999999999853
No 51
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=26.36 E-value=37 Score=27.04 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=13.2
Q ss_pred eEeeeeeeEEEeeeh
Q 029958 118 IVRCCVKGSLLEVNN 132 (185)
Q Consensus 118 ~I~spV~G~vvevN~ 132 (185)
.|+||++|+|..+-+
T Consensus 73 ~v~AP~dG~V~~vfp 87 (183)
T 3our_B 73 KMVAPVNGTIGKIFE 87 (183)
T ss_dssp EEECSSSEEEEEECT
T ss_pred EEEeCCCeEEEEECC
Confidence 499999999998865
No 52
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=26.08 E-value=38 Score=26.21 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=12.6
Q ss_pred eEeeeeeeEEEeee
Q 029958 118 IVRCCVKGSLLEVN 131 (185)
Q Consensus 118 ~I~spV~G~vvevN 131 (185)
.+|||++|+|..+-
T Consensus 51 ~v~AP~~G~V~~v~ 64 (162)
T 1ax3_A 51 IVVSPVRGKILNVF 64 (162)
T ss_dssp EEEESCCEEEEECC
T ss_pred cEECCCCeEEEEEc
Confidence 59999999999984
No 53
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=25.67 E-value=39 Score=26.13 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=12.8
Q ss_pred eEeeeeeeEEEeee
Q 029958 118 IVRCCVKGSLLEVN 131 (185)
Q Consensus 118 ~I~spV~G~vvevN 131 (185)
.+|||++|+|..+-
T Consensus 51 ~v~AP~~G~V~~v~ 64 (161)
T 1f3z_A 51 KMVAPVDGTIGKIF 64 (161)
T ss_dssp EEECSSSEEEEEEC
T ss_pred cEECCCCeEEEEEc
Confidence 59999999999996
Done!