Query 029958
Match_columns 185
No_of_seqs 120 out of 1071
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 09:48:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029958.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029958hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hpca_ b.84.1.1 (A:) Protein 100.0 9E-31 6.6E-35 201.6 12.9 115 41-180 10-126 (131)
2 d1onla_ b.84.1.1 (A:) Protein 100.0 1.4E-30 1E-34 199.5 13.0 115 41-180 9-125 (127)
3 d1k8ma_ b.84.1.1 (A:) Lipoyl d 97.2 0.00027 1.9E-08 48.9 5.8 63 71-134 2-65 (87)
4 d1dcza_ b.84.1.1 (A:) Biotin c 97.0 0.00051 3.7E-08 46.2 5.1 35 99-133 28-62 (77)
5 d1ghja_ b.84.1.1 (A:) Lipoyl d 96.8 0.0014 9.9E-08 44.3 6.3 40 95-134 23-62 (79)
6 d1iyua_ b.84.1.1 (A:) Lipoyl d 96.6 0.00099 7.2E-08 44.9 4.0 35 99-133 24-58 (79)
7 d1laba_ b.84.1.1 (A:) Lipoyl d 96.5 0.00053 3.9E-08 46.6 2.3 36 98-133 26-61 (80)
8 d1qjoa_ b.84.1.1 (A:) Lipoyl d 96.3 0.0054 3.9E-07 41.1 6.3 36 98-133 25-60 (80)
9 d1y8ob1 b.84.1.1 (B:128-229) L 96.0 0.0042 3E-07 43.8 4.9 35 98-132 30-64 (102)
10 d1bdoa_ b.84.1.1 (A:) Biotinyl 95.9 0.0041 3E-07 42.0 4.3 36 98-133 30-65 (80)
11 d1gjxa_ b.84.1.1 (A:) Lipoyl d 95.4 0.0021 1.5E-07 43.4 1.2 35 98-132 26-60 (81)
12 d1pmra_ b.84.1.1 (A:) Lipoyl d 94.4 0.0013 9.8E-08 44.5 -2.0 39 95-133 24-62 (80)
13 d1gpra_ b.84.3.1 (A:) Glucose 29.6 14 0.001 26.7 2.5 15 118-132 48-62 (158)
14 d2f3ga_ b.84.3.1 (A:) Glucose- 28.5 15 0.0011 26.3 2.5 15 118-132 40-54 (150)
15 d2gpra_ b.84.3.1 (A:) Glucose 25.5 16 0.0012 26.2 2.2 15 118-132 46-60 (154)
No 1
>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}
Probab=99.97 E-value=9e-31 Score=201.56 Aligned_cols=115 Identities=29% Similarity=0.455 Sum_probs=104.7
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+++|.|+.. .+++++||| |++||+.+|+|++|++| +|. .+++|+.|++|++.++++.|
T Consensus 10 t~~H~Wv~~--e~~~~~vGi--t~~a~~~lG~i~~v~lp~~g~-----------------~v~~g~~~~~iEs~k~~~~i 68 (131)
T d1hpca_ 10 APSHEWVKH--EGSVATIGI--TDHAQDHLGEVVFVELPEPGV-----------------SVTKGKGFGAVESVKATSDV 68 (131)
T ss_dssp CTTSEEEEE--ETTEEEEEE--CHHHHHHHCSEEEEECCCTTC-----------------EECBTSEEEEEEESSCEEEE
T ss_pred CCCeEEEEe--cCCEEEEEE--CHHHHhhhhhheeecCCCCCc-----------------cccCCCceEEEEeecccccc
Confidence 478999864 367999999 99999999999999999 775 79999999999999999999
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHhh
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKREE 180 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~~~ 180 (185)
+||++|+|+++|+.|.++|++||++||++|||+.+.+. ++++ +.||+.++|.++.+.
T Consensus 69 ~sPv~G~vv~vN~~l~~~P~llN~dpy~~gWl~~i~~~d~~~~----~~Ll~~~~Y~~~~~e 126 (131)
T d1hpca_ 69 NSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDEL----ESLLGAKEYTKFCEE 126 (131)
T ss_dssp EBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESSGGGG----GGSBCHHHHHHHHHH
T ss_pred cCCcchhheeehhhhhhCHHHHhCCCCCCcEEEEEEECCHHHH----HhCCCHHHHHHHHhh
Confidence 99999999999999999999999999999999977664 5556 789999999998765
No 2
>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}
Probab=99.97 E-value=1.4e-30 Score=199.46 Aligned_cols=115 Identities=27% Similarity=0.361 Sum_probs=104.0
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119 (185)
Q Consensus 41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I 119 (185)
+++|.|+.. . +++++||| |++||+++|+|++|+|| +|. .+++|+++++|++.++++.|
T Consensus 9 s~~H~Wv~~-~-~~~~~iGi--t~~a~~~lG~i~~v~lp~~g~-----------------~v~~g~~~~~iEs~k~~~~i 67 (127)
T d1onla_ 9 TKTHEWALP-E-GDTVLVGI--TDYAQDALGDVVYVELPEVGR-----------------VVEKGEAVAVVESVKTASDI 67 (127)
T ss_dssp CTTSEEEEE-E-TTEEEEEE--CHHHHHHHCSEEEEECBCTTC-----------------EECTTCEEEEEEESSBEEEE
T ss_pred CCCcEEEEe-c-CCEEEEEe--CHHHHhhccccccccCCCCCc-----------------hhcCCCceEEEeeccceeec
Confidence 368999854 3 57999999 99999999999999999 775 68999999999999999999
Q ss_pred eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeC-CccchhhhhccCCCHHHHHHHHhh
Q 029958 120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADWLKIKSSLLGLEDYKRKREE 180 (185)
Q Consensus 120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p-~~~~~~~~~~~Lls~eeY~~~~~~ 180 (185)
+|||+|+|+++|+.|.++|++||++||++|||+.+.+ ++.++ +.||+.++|.++.+.
T Consensus 68 ~sPvsG~Vv~vN~~l~~~P~lin~dpy~~gWl~~ik~~d~~~~----~~Ll~~~~Y~~~l~~ 125 (127)
T d1onla_ 68 YAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDMGDL----DELLDAGGYQEVLES 125 (127)
T ss_dssp ECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESCGGGG----GGSBCHHHHHHHHHH
T ss_pred cCCccceEEEEhhhhhhCHHHhcCCCCCCCEEEEEEECCHHHH----HHcCCHHHHHHHHhh
Confidence 9999999999999999999999999999999997765 45566 889999999998764
No 3
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.23 E-value=0.00027 Score=48.87 Aligned_cols=63 Identities=14% Similarity=0.235 Sum_probs=43.1
Q ss_pred CCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 71 GGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 71 g~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
++|+.+.+| .|.....+.-+.= .++-+..+++|++||.|++.+...+|.||.+|+|.+++-..
T Consensus 2 ~~~~~~~lP~lg~~~~eg~i~~w-~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~ 65 (87)
T d1k8ma_ 2 GQVVQFKLSDIGEGIREVTVKEW-YVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNL 65 (87)
T ss_dssp CCCEEEECCSSCTTSCCEEEEEE-CCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCS
T ss_pred CccEEEECCCCCCCceeEEEEEE-EcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCC
Confidence 345555566 4532221221222 23335689999999999999999999999999999887544
No 4
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=96.99 E-value=0.00051 Score=46.16 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=31.9
Q ss_pred eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
..|+.|++||.+++.+..++|+||++|.|.+++-+
T Consensus 28 d~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~ 62 (77)
T d1dcza_ 28 DTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVK 62 (77)
T ss_dssp CEECTTSEEEEEEETTEEEEEECSSSEEEEEECCC
T ss_pred CEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeC
Confidence 37999999999999999999999999999998744
No 5
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}
Probab=96.83 E-value=0.0014 Score=44.28 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=34.6
Q ss_pred cccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958 95 KKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 134 (185)
Q Consensus 95 Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L 134 (185)
++-+..+++|++||.|++.+.++.|.||.+|+|.+++-.-
T Consensus 23 v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~ 62 (79)
T d1ghja_ 23 KKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62 (79)
T ss_dssp SCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCT
T ss_pred cCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCC
Confidence 3345689999999999999999999999999999887443
No 6
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=96.57 E-value=0.00099 Score=44.87 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=31.7
Q ss_pred eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
..++.|++||.|++.+..++|.||.+|+|.++.-.
T Consensus 24 d~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~ 58 (79)
T d1iyua_ 24 DLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVK 58 (79)
T ss_dssp CBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCC
T ss_pred CEEecCceEEEEEecCcEEEEEeccccEEEEEeeC
Confidence 37999999999999999999999999999998643
No 7
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=96.50 E-value=0.00053 Score=46.56 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=32.4
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
+..+++|++||.|++.+.+++|.||.+|+|.+++-.
T Consensus 26 Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~ 61 (80)
T d1laba_ 26 GDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVP 61 (80)
T ss_dssp CCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSC
T ss_pred CCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeC
Confidence 458999999999999999999999999999887643
No 8
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}
Probab=96.26 E-value=0.0054 Score=41.14 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=32.6
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
+..++.|++||.|++.+.+.+|.||.+|+|.+++-.
T Consensus 25 Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~ 60 (80)
T d1qjoa_ 25 GDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVN 60 (80)
T ss_dssp TCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCC
T ss_pred CCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeC
Confidence 447999999999999999999999999999988743
No 9
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.01 E-value=0.0042 Score=43.77 Aligned_cols=35 Identities=9% Similarity=0.131 Sum_probs=31.9
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~ 132 (185)
+..|+.|++||.|++++....|.||.+|.|.++.-
T Consensus 30 Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v 64 (102)
T d1y8ob1 30 GEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILV 64 (102)
T ss_dssp TCEECTTCEEEEEECSSCEEEEECCSCEEEEEESS
T ss_pred CCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEE
Confidence 45899999999999999999999999999998743
No 10
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}
Probab=95.89 E-value=0.0041 Score=41.98 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=32.8
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
+..++.|++||.|++.+-..+|.||.+|+|.+++-+
T Consensus 30 Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~ 65 (80)
T d1bdoa_ 30 GQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVE 65 (80)
T ss_dssp TCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSC
T ss_pred CCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeC
Confidence 457999999999999999999999999999999743
No 11
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}
Probab=95.42 E-value=0.0021 Score=43.40 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=31.7
Q ss_pred ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958 98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 132 (185)
Q Consensus 98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~ 132 (185)
+..+++|++||.|++.+...+|.||.+|+|.+++-
T Consensus 26 Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v 60 (81)
T d1gjxa_ 26 GDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKV 60 (81)
T ss_dssp SCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCC
T ss_pred CCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEe
Confidence 45899999999999999999999999999987753
No 12
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}
Probab=94.43 E-value=0.0013 Score=44.48 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=33.5
Q ss_pred cccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958 95 KKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133 (185)
Q Consensus 95 Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~ 133 (185)
++-+..++.|++||.|++.+..+.|.||.+|.|.+++-.
T Consensus 24 v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~ 62 (80)
T d1pmra_ 24 KKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLED 62 (80)
T ss_dssp CCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTC
T ss_pred eCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeC
Confidence 333568999999999999999999999999999877543
No 13
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}
Probab=29.64 E-value=14 Score=26.73 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=13.0
Q ss_pred eEeeeeeeEEEeeeh
Q 029958 118 IVRCCVKGSLLEVNN 132 (185)
Q Consensus 118 ~I~spV~G~vvevN~ 132 (185)
.|+||++|+|..+-+
T Consensus 48 ~v~AP~~G~I~~i~~ 62 (158)
T d1gpra_ 48 IVVSPVRGKILNVFP 62 (158)
T ss_dssp EEECSSSEEEEEECT
T ss_pred EEEEeeCeEEEEEcC
Confidence 399999999998864
No 14
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}
Probab=28.53 E-value=15 Score=26.28 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=12.9
Q ss_pred eEeeeeeeEEEeeeh
Q 029958 118 IVRCCVKGSLLEVNN 132 (185)
Q Consensus 118 ~I~spV~G~vvevN~ 132 (185)
.|+||++|+|..+-+
T Consensus 40 ~v~AP~dG~V~~v~~ 54 (150)
T d2f3ga_ 40 KMVAPVDGTIGKIFE 54 (150)
T ss_dssp EEECSSSEEEEEECT
T ss_pred eEEeecCEEEEEECC
Confidence 499999999998754
No 15
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}
Probab=25.49 E-value=16 Score=26.24 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=13.0
Q ss_pred eEeeeeeeEEEeeeh
Q 029958 118 IVRCCVKGSLLEVNN 132 (185)
Q Consensus 118 ~I~spV~G~vvevN~ 132 (185)
.|+||++|+|..+-+
T Consensus 46 ~v~AP~dG~I~~i~~ 60 (154)
T d2gpra_ 46 DFHAPVSGKLVTAFP 60 (154)
T ss_dssp EEECSSCEEEEECCT
T ss_pred EEEEecCeEEEEECC
Confidence 399999999998865
Done!