BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029959
(185 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40872|PKSM_BACSU Polyketide synthase PksM OS=Bacillus subtilis (strain 168) GN=pksM
PE=1 SV=4
Length = 4262
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 29/145 (20%)
Query: 31 QFLTITRSGFDEEESEELLKNENKKKKKNQVLLEGYVETDSEDDLKRTKSLTDEDLDELK 90
+FL +T E ++ L ENK + K + +E +E D ++ + ++ + L+ K
Sbjct: 3379 RFLGMTEPAIPEPATQAPLAQENKDEVKT-LSIEKRLEHDLKEHIHTLLKISKDKLNLNK 3437
Query: 91 GCLDLGFGFSYDEIPELCNTL---------PALELCYSMSQK----FMDEHQ-------- 129
D GF Y + + N L PAL YS Q+ F+ +H+
Sbjct: 3438 NWADFGFDSIY--LAKFSNVLSKHFNIEVTPALFFGYSTLQELISFFLTDHKELIEAFYR 3495
Query: 130 -----SQKSPESHGNSPVSTDPVSS 149
+QK PE++ PV+ +P +S
Sbjct: 3496 DDASEAQKPPEAYAVIPVALEPEAS 3520
>sp|Q5QXN7|TIG_IDILO Trigger factor OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM
15497 / L2-TR) GN=tig PE=3 SV=1
Length = 433
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 49 LKNENKKKKKNQVLLEGYVETDSEDDLKRTKSLTDEDLDELKGCLDLGFGFSYDEIPELC 108
LKN K K K QVL +G VE + D++ KS+ D+++D+L+ FG + +++P+L
Sbjct: 278 LKNAVKAKVKEQVL-KGIVENN---DVELPKSMIDQEIDQLRKQAAQRFGGNVEQMPDLP 333
Query: 109 NTL 111
L
Sbjct: 334 AEL 336
>sp|Q8LGA1|CCD41_ARATH Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2
Length = 308
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 17/116 (14%)
Query: 15 SEAIMEEETHDLNQEPQFLTITRSGFDEEESEELLKNENKKKKKNQVLLEGYVETDSEDD 74
+E+ +++E +++ P ++I + GF + ESEE++ +K+K++ S+D
Sbjct: 13 TESNVDDEGMIVDETPIEISIPQMGFSQSESEEIIMEMVEKEKQH---------LPSDDY 63
Query: 75 LKRTKSLTDEDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFMDEHQS 130
+KR +S DLD L++G + + I + C LC+ ++ ++D S
Sbjct: 64 IKRLRS---GDLD-----LNVGRRDALNWIWKACEVHQFGPLCFCLAMNYLDRFLS 111
>sp|O93436|STAM2_CHICK Signal transducing adapter molecule 2 OS=Gallus gallus GN=STAM2
PE=1 SV=1
Length = 468
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 65/160 (40%), Gaps = 37/160 (23%)
Query: 23 THDLNQEPQFLTITRSGFDEEESEELLK--------NENKKKKKNQVL--------LEGY 66
T DLN EP+ T+ S E+ +EE+ K +E+K K QVL
Sbjct: 256 TSDLNVEPEAATVDNSCVPEDATEEIKKAEPEAVYIDEDKMDKTLQVLQSIDPTDLNLDT 315
Query: 67 VETDSEDDLKRTKSLTDEDLDELKGCLDLGFGFSYDEIPEL-CNTLPALEL--------- 116
DSE ++ + DE L+E+ + E+ EL L ALEL
Sbjct: 316 DLLDSEVICQQMGPMIDEKLEEIDR--------KHSELSELNVKVLEALELYNKLMNETP 367
Query: 117 CYSMSQKFMDEHQSQKSPESHGNSPVSTDPVSSPIANWKI 156
YS K H +Q P S G S V + PV P N+ I
Sbjct: 368 MYSAYSKL--HHPAQYPPTSSGVS-VQSYPVQPPSGNYMI 404
>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3
Length = 18141
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 39 GFDEEESEELLKNENKKKKKNQVLLEGYVETDSEDDLKRTKSLTDEDLDE 88
G E+E E++ K E KK KK+ + Y+ T+ ED+ +L EDLD+
Sbjct: 13694 GLVEDEVEKVQKEETKKPKKSPI---TYIATEQEDNDNNYDALVKEDLDQ 13740
>sp|D4GGR2|TATD_PANAM Tat-linked quality control protein TatD OS=Pantoea ananatis (strain
LMG 20103) GN=tatD PE=3 SV=2
Length = 260
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 87 DELKGCLDLGF-----GFSYDE-----IPELCNTLPALELCYSMSQKFMDEHQSQKSPES 136
+EL CLD+G G+ DE + E+ +PA L ++ + P S
Sbjct: 160 EELTACLDMGLSVGITGWVCDERRGIALREMLPLIPAERLLLETDAPYLLPRDMRPRPTS 219
Query: 137 HGNSPVSTDPVSSPIANWK 155
N P + +ANW+
Sbjct: 220 RRNEPCFLPHILQQVANWR 238
>sp|Q96JK9|MAML3_HUMAN Mastermind-like protein 3 OS=Homo sapiens GN=MAML3 PE=1 SV=3
Length = 1134
Score = 30.4 bits (67), Expect = 7.5, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 104 IPELCNTLPALELCYSMSQKFMDEHQSQ------KSPESHGNSPVSTDPVSSPIANWKIS 157
I EL NT+P ++ ++ F ++ + + ++P S ++ V +DP SP A+ +
Sbjct: 313 IDELANTVPEDDIQDLFNEDFEEKKEPEFSQPATETPLSQESASVKSDPSHSPFAHVSMG 372
Query: 158 SPGDHP 163
SP P
Sbjct: 373 SPQARP 378
>sp|Q71SP7|FAS_BOVIN Fatty acid synthase OS=Bos taurus GN=FASN PE=2 SV=1
Length = 2513
Score = 30.4 bits (67), Expect = 7.9, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 62 LLEGYVETDSEDDLKRTKSLTDEDLDELKGCLDL-GFGFSYDEIPELCNTLPALELCYSM 120
LL G + + + LK +L E++ LK + L G G Y IP L NT P LEL Y+
Sbjct: 1218 LLSGLLNSPA---LKACVTLALENMTSLKMKVVLAGDGQLYSRIPTLLNTQPLLELDYTA 1274
Query: 121 SQKF-------------MDEHQSQKSPESHGNSPVSTDPVSSPIANWKISSPGD 161
+ + +D Q Q P +P + + + N+ ++S GD
Sbjct: 1275 TDRHPQALEAAQAKLQQLDITQGQWDPSD--PAPSNLGGANLVVCNYALASLGD 1326
>sp|E1SKR8|TATD_PANVC Tat-linked quality control protein TatD OS=Pantoea vagans (strain
C9-1) GN=tatD PE=3 SV=1
Length = 260
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 87 DELKGCLDLGF-----GFSYDE-----IPELCNTLPALELCYSMSQKFMDEHQSQKSPES 136
DEL+ CL +G G+ DE + EL +PA L ++ + P S
Sbjct: 160 DELEACLAMGLSVGITGWVCDERRGLELRELLPLIPADRLLLETDAPYLLPRDMRPRPTS 219
Query: 137 HGNSPVSTDPVSSPIANWKISSPGDHPEDVKARL 170
N P + + +A W+ G+ E++ R+
Sbjct: 220 RRNEPCFLPHIVNQVATWR----GESAEELATRI 249
>sp|A8WUP2|HOOK_CAEBR Zygote defective protein 12 OS=Caenorhabditis briggsae GN=zyg-12
PE=3 SV=2
Length = 764
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 78 TKSLTDEDLDELKGCL-DLGFGFS--------YDEIPELCNTLPALELCYSMSQKFMDEH 128
++ L DEDLDE + L DL F S D+ LCN E+ + + + F DE
Sbjct: 31 SRRLDDEDLDERRKDLADLVFWMSGLKATTLPLDDHTSLCNGRAFAEILHEIDRSFFDER 90
Query: 129 QSQKSPESHGNS 140
+ PE +S
Sbjct: 91 WLETMPEMRTSS 102
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,897,000
Number of Sequences: 539616
Number of extensions: 3269716
Number of successful extensions: 13234
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 147
Number of HSP's that attempted gapping in prelim test: 12942
Number of HSP's gapped (non-prelim): 381
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)