Query 029961
Match_columns 185
No_of_seqs 112 out of 435
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:21:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3336 Predicted member of th 100.0 9.8E-65 2.1E-69 397.4 19.1 175 2-184 1-176 (185)
2 PF04707 PRELI: PRELI-like fam 100.0 1.5E-58 3.2E-63 364.6 22.7 156 16-179 1-157 (157)
3 KOG3337 Protein similar to pre 100.0 2E-50 4.3E-55 316.9 9.0 170 1-180 1-170 (201)
4 PF10698 DUF2505: Protein of u 97.4 0.042 9.1E-07 43.0 19.8 142 5-167 1-153 (159)
5 PF02121 IP_trans: Phosphatidy 96.6 0.18 4E-06 42.8 15.4 76 40-119 39-118 (254)
6 cd08889 SRPBCC_PITPNM1-2_like 89.3 0.55 1.2E-05 40.1 4.2 55 40-94 39-97 (260)
7 cd07815 SRPBCC_PITP Lipid-bind 89.2 0.54 1.2E-05 39.9 4.1 55 40-94 37-95 (251)
8 cd08905 START_STARD1-like Chol 88.8 11 0.00025 30.5 12.4 124 3-139 49-180 (209)
9 cd08888 SRPBCC_PITPNA-B_like L 87.7 0.77 1.7E-05 39.1 4.1 48 40-87 37-87 (258)
10 KOG3668 Phosphatidylinositol t 87.0 0.9 1.9E-05 38.5 4.0 48 40-87 39-89 (269)
11 cd08868 START_STARD1_3_like Ch 85.9 16 0.00036 29.3 16.1 123 3-139 48-179 (208)
12 cd08890 SRPBCC_PITPNC1_like Li 85.4 1.2 2.6E-05 37.8 4.0 46 40-87 37-86 (250)
13 cd08903 START_STARD5-like Lipi 77.9 36 0.00077 27.6 16.1 124 3-139 46-179 (208)
14 cd08874 START_STARD9-like C-te 72.9 50 0.0011 27.0 13.6 139 5-167 47-197 (205)
15 COG5637 Predicted integral mem 49.9 12 0.00026 30.6 2.0 37 6-46 73-110 (217)
16 PF08982 DUF1857: Domain of un 46.3 55 0.0012 25.5 5.2 72 16-112 21-92 (149)
17 cd08911 START_STARD7-like Lipi 43.6 1.7E+02 0.0037 23.5 14.8 148 3-166 45-204 (207)
18 cd08873 START_STARD14_15-like 42.9 2E+02 0.0044 24.1 15.7 135 3-153 77-224 (235)
19 PLN02806 complex I subunit 42.9 14 0.00031 25.9 1.3 10 11-20 29-38 (81)
20 cd05018 CoxG Carbon monoxide d 39.0 1.4E+02 0.0031 21.3 15.2 112 5-139 3-114 (144)
21 cd00153 RalGDS_RA Ubiquitin do 33.1 1.8E+02 0.004 20.8 6.6 50 47-96 8-63 (87)
22 PF12210 Hrs_helical: Hepatocy 31.7 55 0.0012 23.9 2.8 23 145-168 6-28 (96)
23 KOG4058 Uncharacterized conser 25.8 64 0.0014 25.9 2.5 27 57-83 165-194 (199)
24 PF10500 SR-25: Nuclear RNA-sp 25.0 40 0.00086 28.2 1.3 21 43-66 171-191 (225)
25 KOG3438 DNA-directed RNA polym 22.4 2.2E+02 0.0047 21.1 4.6 75 89-181 14-97 (105)
26 PF11630 DUF3254: Protein of u 21.5 2.3E+02 0.005 20.8 4.5 30 122-156 54-83 (100)
No 1
>KOG3336 consensus Predicted member of the intramitochondrial sorting protein family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-65 Score=397.40 Aligned_cols=175 Identities=45% Similarity=0.767 Sum_probs=167.3
Q ss_pred ceEEEeeEEeeCChHHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCC-ceE
Q 029961 2 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQ-DIC 80 (185)
Q Consensus 2 vk~~~~~~~y~~pwe~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~-~~~ 80 (185)
||+|+++|+|+||||+|++|.|+|||||++ +||+.+|||+|++|+ .|+|+|+|||++++.+|+|+.+|+|. ..|
T Consensus 1 MKi~~seh~F~hPwE~Vt~A~w~KyPnp~~----~hVi~VDvl~R~l~~-~GkL~TeRlit~~~~~P~w~~~LiG~a~~~ 75 (185)
T KOG3336|consen 1 MKIFQSEHIFDHPWETVTAAAWRKYPNPIN----THVIGVDVLDRKLDD-SGKLHTERLITIHQGLPSWIHKLIGGANTC 75 (185)
T ss_pred CccccccccccCcHHHHHHHHHHhCCCCCC----CceEEEeeeeeeecc-CceEEEeeeeeeccCCcHHHHHHhCcccce
Confidence 899999999999999999999999999987 699999999999996 78999999999999999999999987 568
Q ss_pred EEEEEEEEeCCCCeEEEEEEeecccceEEEEEEEEEeeCCCCCCCceEEEEEEEEEEecccchHHHHHHHHHHHHHHHHH
Q 029961 81 HCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQ 160 (185)
Q Consensus 81 ~~~E~s~vD~~~r~m~~~s~Nls~~~~~~v~E~~~Y~~~penp~~~T~~~q~a~i~i~~~~~~~~~~~~iE~~~~~rf~~ 160 (185)
|+.|.|+|||+.|+|++.|+|+||++++.|+|+++|.|||+||+ ||+|+|+|.|++++. +..|++++|+|++++|.+
T Consensus 76 yv~E~SvVD~~~ksm~L~t~Nltf~~~l~vdE~l~Y~PhP~dps-kTv~~QEa~it~~~~--~~~ls~~~E~~~~s~fs~ 152 (185)
T KOG3336|consen 76 YVREVSVVDPKRKSMTLKTCNLTFSDFLSVDERLTYSPHPEDPS-KTVLKQEAIITIKGP--LVSLSEYVEQWSASRFSQ 152 (185)
T ss_pred EEEEEEEEcCccceEEEEecccccccceEeeeEEEecCCCCCcc-cceeeeeeEEEEecc--hhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999996 899999999999874 446899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCC
Q 029961 161 NSVKGREVMERICKYLEAESRGIS 184 (185)
Q Consensus 161 na~kgr~~~e~vl~~l~~e~~~~~ 184 (185)
||.|||+|||+||+.++.|.++|+
T Consensus 153 NA~KGreg~e~Vl~~~n~e~~~i~ 176 (185)
T KOG3336|consen 153 NASKGREGFEWVLKKINAEVERIS 176 (185)
T ss_pred cccccHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998875
No 2
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=100.00 E-value=1.5e-58 Score=364.62 Aligned_cols=156 Identities=42% Similarity=0.744 Sum_probs=148.6
Q ss_pred HHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCC-ceEEEEEEEEEeCCCCe
Q 029961 16 ERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQ-DICHCVESTVVDAQSKS 94 (185)
Q Consensus 16 e~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~-~~~~~~E~s~vD~~~r~ 94 (185)
|+|++|||+|||||++ |||+++|||+|++|+ +|+|+|+||+.+++++|+|++||+|. ..+|++|+|+|||++|+
T Consensus 1 e~V~~a~w~kYPnp~~----~hVl~~Dvl~r~vd~-~g~l~t~Rl~~~~~~~P~w~~kl~g~~~~~~~~E~S~vD~~~k~ 75 (157)
T PF04707_consen 1 ETVTSAFWRKYPNPYS----PHVLSVDVLDREVDP-DGKLHTKRLITKKNNLPRWLKKLIGVDSECYIIEESIVDPKNKT 75 (157)
T ss_pred CHhHHHHHhhCCCCCC----CceeEEEEEEEEEcC-CCcEEEeeeeeeecCchHHHHHHhCcCceEEEEEEEEEECCCCE
Confidence 6899999999999986 799999999999998 99999999999999999999999995 67999999999999999
Q ss_pred EEEEEEeecccceEEEEEEEEEeeCCCCCCCceEEEEEEEEEEecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029961 95 MQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICK 174 (185)
Q Consensus 95 m~~~s~Nls~~~~~~v~E~~~Y~~~penp~~~T~~~q~a~i~i~~~~~~~~~~~~iE~~~~~rf~~na~kgr~~~e~vl~ 174 (185)
|+++|+|+||++++.|+|+|+|.|||+|| +||+|+|+|+|+++| ++.+|+++||+|++++|.+||+|||+|||++|+
T Consensus 76 l~~~t~Nls~~~~~~v~E~~~Y~~~p~np-~~T~~~q~a~i~~~~--~~~~~~~~iE~~~~~~f~~na~kgr~~~e~vi~ 152 (157)
T PF04707_consen 76 LTTKTRNLSFSSFLSVEETCVYKPHPDNP-NWTLFKQEATISIKG--SFSGFSSRIEKFSVSRFKSNAKKGREGMEWVIK 152 (157)
T ss_pred EEEEEEEcccCceeEEEEEEEEEECCCCC-CcceEEEEEEEEEeC--chhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 699999999999865 346799999999999999999999999999999
Q ss_pred HHhhh
Q 029961 175 YLEAE 179 (185)
Q Consensus 175 ~l~~e 179 (185)
+|++|
T Consensus 153 ~l~~~ 157 (157)
T PF04707_consen 153 KLEEE 157 (157)
T ss_pred HHhcC
Confidence 99875
No 3
>KOG3337 consensus Protein similar to predicted member of the intramitochondrial sorting protein family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-50 Score=316.94 Aligned_cols=170 Identities=26% Similarity=0.433 Sum_probs=155.7
Q ss_pred CceEEEeeEEeeCChHHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCCceE
Q 029961 1 MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDIC 80 (185)
Q Consensus 1 Mvk~~~~~~~y~~pwe~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~ 80 (185)
|++++...++|+++|++|.+|||.||||||+ +||+++|||+|+||+ +|.|+|+||+.|++.+|+|+.+++....+
T Consensus 1 Mvl~~~~~t~lp~s~d~VssAfw~RYPNpyS----kHVlSeDvleR~Vt~-dg~L~T~RLLvKqgRlPrWasrll~i~~v 75 (201)
T KOG3337|consen 1 MVLYDLGQTVLPSSWDQVSSAFWQRYPNPYS----KHVLSEDVLEREVTD-DGTLVTKRLLVKQGRLPRWASRLLDIQVV 75 (201)
T ss_pred CeeEecCCCcccCcHHHHHHHHHHhCCCccc----cccccHHHHhhhcCc-ccceehhhhHHhcCCCchhhhhhccccee
Confidence 8999999999999999999999999999997 699999999999996 99999999999999999999999999999
Q ss_pred EEEEEEEEeCCCCeEEEEEEeecccceEEEEEEEEEeeCCCCCCCceEEEEEEEEEEecccchHHHHHHHHHHHHHHHHH
Q 029961 81 HCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQ 160 (185)
Q Consensus 81 ~~~E~s~vD~~~r~m~~~s~Nls~~~~~~v~E~~~Y~~~penp~~~T~~~q~a~i~i~~~~~~~~~~~~iE~~~~~rf~~ 160 (185)
|++|+|+|||.+++|.++|+|++|.++|.|+|.|+|..+.+|| + |+-...+.+.+ +...|+.+++++|++.+|++
T Consensus 76 ~viE~SVvdp~nqtmkTyTrNldH~~lm~v~Erc~y~~ssdns-~-ti~d~~~kfvs---s~~~G~~r~Vqe~sl~rFke 150 (201)
T KOG3337|consen 76 YVIEESVVDPVNQTMKTYTRNLDHARLMVVEERCVYCVSSDNS-G-TIEDRREKFVS---SSLFGVSRAVQEFSLARFKE 150 (201)
T ss_pred EEeeeeecCccccceeeeeeccccceeeEEEEEEEEEecCCCC-c-chhHHHHHHhh---hhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 4 44443333331 22368999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 029961 161 NSVKGREVMERICKYLEAES 180 (185)
Q Consensus 161 na~kgr~~~e~vl~~l~~e~ 180 (185)
|..|+|.||+++|+++.++.
T Consensus 151 nv~ktrkGl~yvlqk~fg~a 170 (201)
T KOG3337|consen 151 NVTKTRKGLEYVLQKLFGEA 170 (201)
T ss_pred HHHHHHhhHHHHHHHHhccc
Confidence 99999999999999998654
No 4
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=97.39 E-value=0.042 Score=43.02 Aligned_cols=142 Identities=20% Similarity=0.195 Sum_probs=89.5
Q ss_pred EEeeEEeeCChHHHHHHHh-----cc----CCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhh
Q 029961 5 YTQEHIYKHPWERVTSASW-----RK----FADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKII 75 (185)
Q Consensus 5 ~~~~~~y~~pwe~V~~A~w-----~K----YPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~ 75 (185)
|+..+.|++|-+.|..+|- +. ...+. ..+.+-.++. +|...+.+.-.-.-.+|..++|++
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~----------~~~~~~~~~~-~g~~v~~~~~v~~~~lP~~~~k~v 69 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADN----------AEVESFEVDG-DGVRVTVRQTVPADKLPSAARKFV 69 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCC----------ceEEEEEEcC-CeEEEEEEEecChhhCCHHHHHhc
Confidence 6789999999999988763 22 12211 1223334553 664444333222336999999999
Q ss_pred CCceEEEEEEEEEeCC-CCeEEEEEEeecc-cceEEEEEEEEEeeCCCCCCCceEEEEEEEEEEecccchHHHHHHHHHH
Q 029961 76 GQDICHCVESTVVDAQ-SKSMQLTTRNVSL-KKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELR 153 (185)
Q Consensus 76 g~~~~~~~E~s~vD~~-~r~m~~~s~Nls~-~~~~~v~E~~~Y~~~penp~~~T~~~q~a~i~i~~~~~~~~~~~~iE~~ 153 (185)
|.+..+..++.+ .|. ....+- +..++. ..-+.+.=+++..|+++ .|.+.-++.++|+- . .++.+||++
T Consensus 70 ~~~l~v~~~e~w-~~~~~g~~~g-~~~~~~~G~P~~~~G~~~L~~~~~----gt~~~~~g~v~v~V-P---lvGgkiE~~ 139 (159)
T PF10698_consen 70 GGDLRVTRTETW-TPLDDGRRTG-TFTVSIPGAPVSISGTMRLRPDGG----GTRLTVEGEVKVKV-P---LVGGKIEKA 139 (159)
T ss_pred CCCeEEEEEEEE-ecCCCCeEEE-EEEEEecCceEEEEEEEEEecCCC----CEEEEEEEEEEEEE-c---cccHHHHHH
Confidence 877666666666 653 343332 233333 45677888888888433 48888888888753 2 256799999
Q ss_pred HHHHHHHHHHHHHH
Q 029961 154 CAEKFMQNSVKGRE 167 (185)
Q Consensus 154 ~~~rf~~na~kgr~ 167 (185)
.+....+...+-.+
T Consensus 140 v~~~~~~~~~~e~~ 153 (159)
T PF10698_consen 140 VAENLRKLLEAEQE 153 (159)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877776655433
No 5
>PF02121 IP_trans: Phosphatidylinositol transfer protein; InterPro: IPR001666 Phosphatidylinositol transfer protein (PITP) is a ubiquitous cytosolic protein, thought to be involved in transport of phospholipids from their site of synthesis in the endoplasmic reticulum and Golgi to other cell membranes []. More recently, PITP has been shown to be an essential component of the polyphosphoinositide synthesis machinery and is hence required for proper signalling by epidermal growth factor and f-Met-Leu-Phe, as well as for exocytosis. The role of PITP in polyphosphoinositide synthesis may also explain its involvement in intracellular vesicular traffic [].; GO: 0006810 transport, 0005622 intracellular; PDB: 1T27_A 1KCM_A 2A1L_A 1UW5_C.
Probab=96.60 E-value=0.18 Score=42.84 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=51.9
Q ss_pred EeeeeEe--EEeCCCCe-EEEEEEEeeccCChhHHHHhhCCceEEEEEEEEE-eCCCCeEEEEEEeecccceEEEEEEEE
Q 029961 40 EVDTLNH--KLDPLSGK-LYTTRALTVHAPGPWFVRKIIGQDICHCVESTVV-DAQSKSMQLTTRNVSLKKYIEVEEKIR 115 (185)
Q Consensus 40 s~Dvl~r--~vd~~~g~-L~t~Rli~~~~~~P~w~~kl~g~~~~~~~E~s~v-D~~~r~m~~~s~Nls~~~~~~v~E~~~ 115 (185)
++.||.. .-|+.+|. .||++++.....+|+|++.|+....+++.|+++- .|-.++. +|.+ -+.++.-..|+ .
T Consensus 39 GVEvl~Nep~~~~~g~~GqYT~K~y~l~sklP~~ir~l~P~~~l~v~E~aWNaYPy~~T~--~t~~-~~~kF~i~IET-~ 114 (254)
T PF02121_consen 39 GVEVLKNEPYEDEPGGKGQYTHKIYHLASKLPSWIRALLPKGALYVHEKAWNAYPYCKTV--YTNP-YMDKFSIKIET-M 114 (254)
T ss_dssp EEEEEEEEEEE-TTS-EEEEEEEEEEETTTS-HHHHTTSTTTTTEEEEEEEEETTEEEEE--EEET-TTGGEEEEEEE-E
T ss_pred ceEEEEecccccCCCCceeeEEEEEEecccChHHHHHhCCCceEEEEEEEecccceEEEE--EecC-CCCceEEEEEE-E
Confidence 5667764 33332333 7899999999999999999998888899999987 4665543 3333 44666666777 4
Q ss_pred EeeC
Q 029961 116 YEPH 119 (185)
Q Consensus 116 Y~~~ 119 (185)
|.++
T Consensus 115 ~~~d 118 (254)
T PF02121_consen 115 HKPD 118 (254)
T ss_dssp EESS
T ss_pred EcCC
Confidence 5554
No 6
>cd08889 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs). This subgroup includes an N-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class II phosphatidylinositol transfer protein (PITPs), PITPNM1/PITPalphaI/Nir2 (PYK2 N-terminal domain-interacting receptor2) and PITPNM2/PITPalphaII/Nir3), Drosophila RdgB, and related proteins. These are membrane associated multidomain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Ablation of the mouse gene en
Probab=89.34 E-value=0.55 Score=40.07 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=38.0
Q ss_pred EeeeeEeE--EeCCCC-eEEEEEEEeeccCChhHHHHhhCCceEEEEEEEEEe-CCCCe
Q 029961 40 EVDTLNHK--LDPLSG-KLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVD-AQSKS 94 (185)
Q Consensus 40 s~Dvl~r~--vd~~~g-~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~E~s~vD-~~~r~ 94 (185)
+|.||.-+ .|...| --+|++++.....+|+|++.+++....++.|+++=- |-.++
T Consensus 39 GVEvl~Nepy~~~~~~~GqYT~Kiyhl~sklP~wl~~~~P~~al~v~EkaWNaYPy~~T 97 (260)
T cd08889 39 GVEILENRPYTDGPGGSGQYTHKIYHIGSHIPGWFRAILPKSALRVEEEAWNAYPYTRT 97 (260)
T ss_pred eEEEEeccccccCCCCcceeEEEEEEccccChHHHHHhCCCcceEEehhHhCCCCceEE
Confidence 67777652 332111 358999999999999999999977667777776532 44444
No 7
>cd07815 SRPBCC_PITP Lipid-binding SRPBCC domain of Class I and Class II Phosphatidylinositol Transfer Proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of the phosphatidylinositol transfer protein (PITP) family of lipid transfer proteins. This family of proteins includes Class 1 PITPs (PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator and related proteins), Class IIA PITPs (PITPNM1/PITPalphaI/Nir2, PITPNM2/PITPalphaII/Nir3, Drosophila RdgB, and related proteins), and Class IIB PITPs (PITPNC1/RdgBbeta and related proteins). The PITP family belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns
Probab=89.22 E-value=0.54 Score=39.93 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=38.8
Q ss_pred EeeeeEeE--EeCCCC-eEEEEEEEeeccCChhHHHHhhCCceEEEEEEEEEe-CCCCe
Q 029961 40 EVDTLNHK--LDPLSG-KLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVD-AQSKS 94 (185)
Q Consensus 40 s~Dvl~r~--vd~~~g-~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~E~s~vD-~~~r~ 94 (185)
++.||.-+ .|...| --+|++++.....+|+|++.+++...+++.|+++=- |--++
T Consensus 37 GVEvl~Nepy~~~~~~~GqYT~Kiyhl~sklP~w~~~~~P~~al~v~EkaWNaYPy~~T 95 (251)
T cd07815 37 GVEVLKNEPYEDENGGKGQYTHKIYHLGSKLPSWLRALAPKSALTIEEKSWNAYPYCKT 95 (251)
T ss_pred cEEEEeccCcccCCCCcceeEEEEEEccccchhHHHHhCCccceEEEhhhhCCCCceeE
Confidence 56676642 332121 358999999999999999999987778888887632 44443
No 8
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=88.80 E-value=11 Score=30.54 Aligned_cols=124 Identities=18% Similarity=0.151 Sum_probs=69.3
Q ss_pred eEEEeeEEeeCChHHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCCceEEE
Q 029961 3 KAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHC 82 (185)
Q Consensus 3 k~~~~~~~y~~pwe~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~ 82 (185)
|.|..+-..+.|.+.+..+++..+.+- +..-+++.++++|++ +|+.+-+.|. ...+.|.|+ +-+.+.+..
T Consensus 49 k~~k~e~~i~~~~~~l~~~l~~d~e~~--~~W~~~~~~~~vl~~-id~~~~i~y~-----~~~p~p~~~--vs~RD~V~~ 118 (209)
T cd08905 49 KVFRLEVVVDQPLDNLYSELVDRMEQM--GEWNPNVKEVKILQR-IGKDTLITHE-----VAAETAGNV--VGPRDFVSV 118 (209)
T ss_pred cEEEEEEEecCCHHHHHHHHHhchhhh--ceecccchHHHHHhh-cCCCceEEEE-----EeccCCCCc--cCccceEEE
Confidence 567888899999999999998665431 113457788888887 5643333443 123334443 223344332
Q ss_pred EEEEEE-eCCCCeEEEEEEeecc----cceEEEEEE---EEEeeCCCCCCCceEEEEEEEEEEec
Q 029961 83 VESTVV-DAQSKSMQLTTRNVSL----KKYIEVEEK---IRYEPHPDNPTGWTVCRQETSIRIKP 139 (185)
Q Consensus 83 ~E~s~v-D~~~r~m~~~s~Nls~----~~~~~v~E~---~~Y~~~penp~~~T~~~q~a~i~i~~ 139 (185)
.... +..+-.+...+..... .+++.++.. ...+|.+++| ++|.++..+..+.+|
T Consensus 119 --~~~~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~-~~t~v~~~~~~DpkG 180 (209)
T cd08905 119 --RCAKRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDP-SKTKLTWLLSIDLKG 180 (209)
T ss_pred --EEEEEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCC-CceEEEEEEeecCCC
Confidence 1111 1122222222222222 345555543 4477887777 479999888887554
No 9
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=87.74 E-value=0.77 Score=39.14 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=34.5
Q ss_pred EeeeeEeE--EeCCCC-eEEEEEEEeeccCChhHHHHhhCCceEEEEEEEE
Q 029961 40 EVDTLNHK--LDPLSG-KLYTTRALTVHAPGPWFVRKIIGQDICHCVESTV 87 (185)
Q Consensus 40 s~Dvl~r~--vd~~~g-~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~E~s~ 87 (185)
++.||.-+ .|...| --+|++++.....+|+|++.++....+.+.|+++
T Consensus 37 GVEvl~Nepy~~~~~~~GqYT~Kiyhl~sklP~wir~~~P~~al~v~EkaW 87 (258)
T cd08888 37 GIEVLVNEPYEKDDGEKGQYTHKIYHLQSKVPGFVRMLAPEGSLEIHEKAW 87 (258)
T ss_pred cEEEEeccccccCCCCcceeEEEEEEccccchhHHHHhCCCcceEEehhhh
Confidence 56677642 332111 3589999999999999999998666666777765
No 10
>KOG3668 consensus Phosphatidylinositol transfer protein [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=86.97 E-value=0.9 Score=38.55 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=36.2
Q ss_pred EeeeeEe--EEeCCCCe-EEEEEEEeeccCChhHHHHhhCCceEEEEEEEE
Q 029961 40 EVDTLNH--KLDPLSGK-LYTTRALTVHAPGPWFVRKIIGQDICHCVESTV 87 (185)
Q Consensus 40 s~Dvl~r--~vd~~~g~-L~t~Rli~~~~~~P~w~~kl~g~~~~~~~E~s~ 87 (185)
+|.||.- ..|...|. =+|+++...+..+|+|++.|+....+.+.|+|+
T Consensus 39 GVEvl~nep~~dg~~g~GqyThKIyhl~sk~P~~~r~l~Pk~al~v~EesW 89 (269)
T KOG3668|consen 39 GVEVLKNEPYTDGPGGSGQYTHKIYHLGSKVPAWLRSLLPKGALIVHEESW 89 (269)
T ss_pred ceEEEecCCCcCCCCCccceEEEEEEecccchHHHHHhCCccceEEeeecc
Confidence 5666653 34443222 479999999999999999999777788888876
No 11
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=85.95 E-value=16 Score=29.30 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=71.7
Q ss_pred eEEEeeEEeeCChHHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCCceEEE
Q 029961 3 KAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHC 82 (185)
Q Consensus 3 k~~~~~~~y~~pwe~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~ 82 (185)
+.|..+-+.+.|-+.|..+++....... ..-+++....+|++ +|..+...|. ....++|++ +-+.+.+++
T Consensus 48 ~~~k~~~~i~~~~~~v~~~l~~d~~~~~--~Wd~~~~~~~~i~~-~d~~~~i~y~----~~~~~~~~~---vs~RDfV~~ 117 (208)
T cd08868 48 KVFRLTGVLDCPAEFLYNELVLNVESLP--SWNPTVLECKIIQV-IDDNTDISYQ----VAAEAGGGL---VSPRDFVSL 117 (208)
T ss_pred eEEEEEEEEcCCHHHHHHHHHcCccccc--eecCcccceEEEEE-ecCCcEEEEE----EecCcCCCc---ccccceEEE
Confidence 4677788999999999888876543322 13467888999998 5642222221 112222332 224465554
Q ss_pred EEEEEEeCCCCeEEEEEEeecc------cceEEEEEE---EEEeeCCCCCCCceEEEEEEEEEEec
Q 029961 83 VESTVVDAQSKSMQLTTRNVSL------KKYIEVEEK---IRYEPHPDNPTGWTVCRQETSIRIKP 139 (185)
Q Consensus 83 ~E~s~vD~~~r~m~~~s~Nls~------~~~~~v~E~---~~Y~~~penp~~~T~~~q~a~i~i~~ 139 (185)
.-.. ... ..+.+....+.| .+++.+.-. ..++|.+++| ++|.++..+.++.+|
T Consensus 118 r~~~--~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~-~~t~v~~~~~~Dp~G 179 (208)
T cd08868 118 RHWG--IRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNP-NKCNFTWLLNTDLKG 179 (208)
T ss_pred EEEE--ecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCC-CceEEEEEEEECCCC
Confidence 3322 222 345555555555 444555543 2477888777 479999888887665
No 12
>cd08890 SRPBCC_PITPNC1_like Lipid-binding SRPBCC domain of mammalian PITPNC1,and related proteins (Class IIB PITPs). This subgroup includes the N-terminal SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain of mammalian Class IIB phosphatidylinositol transfer protein (PITP), PITPNC1/RdgBbeta, and related proteins. These are metazoan proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Mammalian PITPNC1 contains an amino-terminal SRPBCC PITP-like domain and a short carboxyl-terminal domain. It is a cytoplasmic protein, and is ubiquitously
Probab=85.40 E-value=1.2 Score=37.80 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=32.7
Q ss_pred EeeeeEeE--EeCC--CCeEEEEEEEeeccCChhHHHHhhCCceEEEEEEEE
Q 029961 40 EVDTLNHK--LDPL--SGKLYTTRALTVHAPGPWFVRKIIGQDICHCVESTV 87 (185)
Q Consensus 40 s~Dvl~r~--vd~~--~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~E~s~ 87 (185)
+|.||.-+ .|.. .|+ +|+.++.....+|+|++.+++.. .++.|+++
T Consensus 37 GVEvl~Nep~~~~~~~~Gq-YT~K~~hl~sklP~w~r~~~P~~-l~v~EkaW 86 (250)
T cd08890 37 GVEVVQNEPCEDPEHGNGQ-FTEKRVYLNSRLPSWARAVVPKI-FYVTEKAW 86 (250)
T ss_pred cEEEEeccccccCCCCccc-eeEEEEEccccChhHHHHhCCcc-eEEehhhh
Confidence 56777653 2221 254 78888889999999999999765 66667665
No 13
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=77.86 E-value=36 Score=27.60 Aligned_cols=124 Identities=16% Similarity=0.118 Sum_probs=71.5
Q ss_pred eEEEeeEEeeCChHHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCC-ceEE
Q 029961 3 KAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQ-DICH 81 (185)
Q Consensus 3 k~~~~~~~y~~pwe~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~-~~~~ 81 (185)
+.|..+-+.+.+-+++..-+.- .++.+.+..-+.+....+|++ +|.++.. .|. .+|+....++.. +.+.
T Consensus 46 ~~~k~e~~i~~s~~~~~~~l~d-~~~~~r~~W~~~~~~~~vle~-id~~~~i---~~~-----~~p~~~~~~vs~RDfV~ 115 (208)
T cd08903 46 NLYKGEGIVYATLEQVWDCLKP-AAGGLRVKWDQNVKDFEVVEA-ISDDVSV---CRT-----VTPSAAMKIISPRDFVD 115 (208)
T ss_pred cEEEEEEEecCCHHHHHHHHHh-ccchhhhhhhhccccEEEEEE-ecCCEEE---EEE-----ecchhcCCCcCCCceEE
Confidence 3467788899999999887731 111111112346778889987 5642222 222 446555544543 4443
Q ss_pred EEEEEEEeCCCCeEEEEEEeecc------cceEEE-EE--EEEEeeCCCCCCCceEEEEEEEEEEec
Q 029961 82 CVESTVVDAQSKSMQLTTRNVSL------KKYIEV-EE--KIRYEPHPDNPTGWTVCRQETSIRIKP 139 (185)
Q Consensus 82 ~~E~s~vD~~~r~m~~~s~Nls~------~~~~~v-~E--~~~Y~~~penp~~~T~~~q~a~i~i~~ 139 (185)
. ..+-...+..+.+......+ .+++.+ .. .+..+|-|.+|+ .|.++.-..++-+|
T Consensus 116 ~--~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~-~t~v~~~~~~DpkG 179 (208)
T cd08903 116 V--VLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPD-KTQLVSFFQTDLSG 179 (208)
T ss_pred E--EEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCC-ceEEEEEEEeccCC
Confidence 2 33333355556555444555 677777 44 234567777774 69999887777554
No 14
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=72.93 E-value=50 Score=26.96 Aligned_cols=139 Identities=12% Similarity=0.014 Sum_probs=83.8
Q ss_pred EEeeEEeeCChHHHHHHH--hccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCCceEEE
Q 029961 5 YTQEHIYKHPWERVTSAS--WRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHC 82 (185)
Q Consensus 5 ~~~~~~y~~pwe~V~~A~--w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~ 82 (185)
|..+-+++.|-++|...+ -.++|+= -+|+.+.++|+ .+|++++..|+ ..+.|+.+ .+-+.+.+..
T Consensus 47 ~~ge~~v~as~~~v~~ll~D~~~r~~W-----d~~~~~~~vl~-~~~~d~~i~y~------~~~~Pwp~-~~~~RDfV~l 113 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVKDPRTRFLY-----DTMIKTARIHK-TFTEDICLVYL------VHETPLCL-LKQPRDFCCL 113 (205)
T ss_pred EEEEEEEcCCHHHHHHHHhCcchhhhh-----HHhhhheeeee-ecCCCeEEEEE------EecCCCCC-CCCCCeEEEE
Confidence 445668899999988888 4455443 35888999999 57764443333 33444322 0113344433
Q ss_pred EEEEEEeCCCCeEEEEEEeecc------c-ceEEEEEEEE---EeeCCCCCCCceEEEEEEEEEEecccchHHHHHHHHH
Q 029961 83 VESTVVDAQSKSMQLTTRNVSL------K-KYIEVEEKIR---YEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVEL 152 (185)
Q Consensus 83 ~E~s~vD~~~r~m~~~s~Nls~------~-~~~~v~E~~~---Y~~~penp~~~T~~~q~a~i~i~~~~~~~~~~~~iE~ 152 (185)
.+..+..+..+ +..+.+.+ . +++.+...+. .+|-+.++++.|.++-.+.++-.| +. |=.
T Consensus 114 --~~~~~~~~~~v-i~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPgg-g~-------iP~ 182 (205)
T cd08874 114 --QVEAKEGELSV-VACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCG-PD-------VPA 182 (205)
T ss_pred --EEEEECCCcEE-EEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCC-CC-------CCH
Confidence 46677666655 55566666 2 6888887766 456666665679888877777442 22 223
Q ss_pred HHHHHHHHHHHHHHH
Q 029961 153 RCAEKFMQNSVKGRE 167 (185)
Q Consensus 153 ~~~~rf~~na~kgr~ 167 (185)
|+++.|...+..+..
T Consensus 183 ~l~N~~~~~~p~~~~ 197 (205)
T cd08874 183 QLLSSLSKRQPLVIA 197 (205)
T ss_pred HHHhHHHHhccHHHH
Confidence 345666655555444
No 15
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=49.85 E-value=12 Score=30.61 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=30.0
Q ss_pred EeeEEeeCChHHHHHHHhccCCC-CCCCCCCcceeEeeeeEe
Q 029961 6 TQEHIYKHPWERVTSASWRKFAD-PENKRTLSHILEVDTLNH 46 (185)
Q Consensus 6 ~~~~~y~~pwe~V~~A~w~KYPn-p~~~~~~~hV~s~Dvl~r 46 (185)
+..-+.+-|-|+|. ++|++.+| |. +.+|+.|+.|++.
T Consensus 73 ~~~V~I~kPae~vy-~~W~dLe~lP~---~Mkhl~SVkVldd 110 (217)
T COG5637 73 EVQVTIDKPAEQVY-AYWRDLENLPL---WMKHLDSVKVLDD 110 (217)
T ss_pred EEEEEeCChHHHHH-HHHHhhhhhhH---HHHhhceeeccCC
Confidence 44667888988875 79999998 54 6899999999874
No 16
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=46.32 E-value=55 Score=25.52 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=42.7
Q ss_pred HHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCCceEEEEEEEEEeCCCCeE
Q 029961 16 ERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSM 95 (185)
Q Consensus 16 e~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~E~s~vD~~~r~m 95 (185)
++|..|..+|.=+|.. +.|++-+++|+++. ++. ..|-+.. |. .-+.|.....+..+.-
T Consensus 21 ~QlW~GL~~kar~p~~--Fvp~i~~c~Vl~e~----~~~--~~R~v~f------------g~--~~v~E~v~~~~~~~V~ 78 (149)
T PF08982_consen 21 EQLWRGLVLKARNPQL--FVPGIDSCEVLSES----DTV--LTREVTF------------GG--ATVRERVTLYPPERVD 78 (149)
T ss_dssp HHHHHHHHHHHH-GGG--T-TT--EEEEEEE-----SSE--EEEEEEE------------TT--EEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHhChhh--CccccCeEEEEecC----CCe--EEEEEEE------------CC--cEEEEEEEEeCCcEEE
Confidence 6788999999977765 67899999999996 222 2333333 33 4578888888887632
Q ss_pred EEEEEeecccceEEEEE
Q 029961 96 QLTTRNVSLKKYIEVEE 112 (185)
Q Consensus 96 ~~~s~Nls~~~~~~v~E 112 (185)
- .-.+-+++-.+.|
T Consensus 79 f---~~~~Gs~lt~~I~ 92 (149)
T PF08982_consen 79 F---AQHDGSSLTNIIS 92 (149)
T ss_dssp E---SSSBEEEEEEEEE
T ss_pred E---EcCCCCEEEEEEe
Confidence 2 3334444444444
No 17
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=43.57 E-value=1.7e+02 Score=23.50 Aligned_cols=148 Identities=11% Similarity=0.090 Sum_probs=82.5
Q ss_pred eEEEeeEEe-eCChHHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCCceEE
Q 029961 3 KAYTQEHIY-KHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICH 81 (185)
Q Consensus 3 k~~~~~~~y-~~pwe~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~ 81 (185)
+.|..+.+| +.|-+.+...+.. ..+.+..-+++....+|++..++ + ++++.....+|+-+ ...+.++
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~D---~~~r~~Wd~~~~~~~~le~~~~~--~----~~i~y~~~~~P~P~---s~RD~V~ 112 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQLD---LEYRKKWDATAVELEVVDEDPET--G----SEIIYWEMQWPKPF---ANRDYVY 112 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhC---HHHHHHHHhhheeEEEEEccCCC--C----CEEEEEEEECCCCC---CCccEEE
Confidence 346677778 8999988766542 12222234577888899984332 2 24444455567322 3445554
Q ss_pred EEEEEEEeCCCCeEEEEEEeecc------cceEEEEEEEE---EeeCCC-CCCCceEEEEEEEEEEecccch-HHHHHHH
Q 029961 82 CVESTVVDAQSKSMQLTTRNVSL------KKYIEVEEKIR---YEPHPD-NPTGWTVCRQETSIRIKPLSAL-ASMAEKV 150 (185)
Q Consensus 82 ~~E~s~vD~~~r~m~~~s~Nls~------~~~~~v~E~~~---Y~~~pe-np~~~T~~~q~a~i~i~~~~~~-~~~~~~i 150 (185)
.. .-..|+.+..+.+.++.+.+ .+++.+..... .+|+.. ++ +++.+.-.+...-.| .+ .++.+.+
T Consensus 113 ~r-~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~-~~~~~~~~~~~dPgG--~IP~~lvN~~ 188 (207)
T cd08911 113 VR-RYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDE-PGFEFVLTYFDNPGV--NIPSYITSWV 188 (207)
T ss_pred EE-EEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCC-CCeEEEEEEEeCCCC--ccCHHHHHHH
Confidence 43 34678877777888888887 56777776544 445531 22 246555444443222 22 2343443
Q ss_pred HHHHHHHHHHHHHHHH
Q 029961 151 ELRCAEKFMQNSVKGR 166 (185)
Q Consensus 151 E~~~~~rf~~na~kgr 166 (185)
=+-+.-.|-+|..|+.
T Consensus 189 ~~~~~~~~l~~l~~a~ 204 (207)
T cd08911 189 AMSGMPDFLERLRNAA 204 (207)
T ss_pred HHhhccHHHHHHHHHH
Confidence 3334455556666554
No 18
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=42.87 E-value=2e+02 Score=24.11 Aligned_cols=135 Identities=12% Similarity=0.005 Sum_probs=77.9
Q ss_pred eEEEeeEEeeCChHHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCCceEEE
Q 029961 3 KAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHC 82 (185)
Q Consensus 3 k~~~~~~~y~~pwe~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~ 82 (185)
+.|..+-..+-|-+++..-+ +.....+..-+|..++++|++ +|++++..|+ +.+.|+ .+-+.+. +
T Consensus 77 l~fk~e~~vd~s~~~v~dlL---~D~~~R~~WD~~~~e~evI~~-id~d~~iyy~------~~p~Pw---Pvk~RDf--V 141 (235)
T cd08873 77 LSFCVELKVQTCASDAFDLL---SDPFKRPEWDPHGRSCEEVKR-VGEDDGIYHT------TMPSLT---SEKPNDF--V 141 (235)
T ss_pred eEEEEEEEecCCHHHHHHHH---hCcchhhhhhhcccEEEEEEE-eCCCcEEEEE------EcCCCC---CCCCceE--E
Confidence 45677778899999887766 334444445678999999996 5654554443 355555 2333444 3
Q ss_pred EEEEEEeCCCC--eEEEEEEeecc------cceEEEEEEEE-EeeCCCCCCCceEEEEEEEEEEe----cccchHHHHHH
Q 029961 83 VESTVVDAQSK--SMQLTTRNVSL------KKYIEVEEKIR-YEPHPDNPTGWTVCRQETSIRIK----PLSALASMAEK 149 (185)
Q Consensus 83 ~E~s~vD~~~r--~m~~~s~Nls~------~~~~~v~E~~~-Y~~~penp~~~T~~~q~a~i~i~----~~~~~~~~~~~ 149 (185)
.-.+...+.+. .+.+..+.+.| .+++.+...+. |.-.|..+ +.|.++-.+.++=. ....++|+++.
T Consensus 142 ~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~-~~t~VtY~~~~dPg~~~~~~~~~~~~~~~ 220 (235)
T cd08873 142 LLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCG-TCTEVSYYNETNPKLLSYVTCNLAGLSAL 220 (235)
T ss_pred EEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCC-CcEEEEEEEEcCCCccceeeecchhhhHH
Confidence 34666653333 24444444443 56788877776 55555544 35877776655411 11224566666
Q ss_pred HHHH
Q 029961 150 VELR 153 (185)
Q Consensus 150 iE~~ 153 (185)
+|..
T Consensus 221 ~~~~ 224 (235)
T cd08873 221 YCRT 224 (235)
T ss_pred HHHH
Confidence 6543
No 19
>PLN02806 complex I subunit
Probab=42.87 E-value=14 Score=25.90 Aligned_cols=10 Identities=50% Similarity=1.255 Sum_probs=6.8
Q ss_pred eeCChHHHHH
Q 029961 11 YKHPWERVTS 20 (185)
Q Consensus 11 y~~pwe~V~~ 20 (185)
+.||||+|.-
T Consensus 29 mrhPWeHV~~ 38 (81)
T PLN02806 29 MRHPWEHVLA 38 (81)
T ss_pred ccCcHHHHHH
Confidence 5678887753
No 20
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=38.96 E-value=1.4e+02 Score=21.25 Aligned_cols=112 Identities=15% Similarity=0.115 Sum_probs=59.9
Q ss_pred EEeeEEeeCChHHHHHHHhccCCCCCCCCCCcceeEeeeeEeEEeCCCCeEEEEEEEeeccCChhHHHHhhCCceEEEEE
Q 029961 5 YTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHCVE 84 (185)
Q Consensus 5 ~~~~~~y~~pwe~V~~A~w~KYPnp~~~~~~~hV~s~Dvl~r~vd~~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~E 84 (185)
++.+..+++|-+.|..++ .-+.|-. ...|.+.++++++ +|.....--+.. + .++.....-.+
T Consensus 3 ~~~~~~i~a~~e~v~~~l-~D~~~~~--~w~p~~~~~~~~~------~~~~~~~~~~~~-~--------~~~~~~~~~~~ 64 (144)
T cd05018 3 ISGEFRIPAPPEEVWAAL-NDPEVLA--RCIPGCESLEKIG------PNEYEATVKLKV-G--------PVKGTFKGKVE 64 (144)
T ss_pred eeeEEEecCCHHHHHHHh-cCHHHHH--hhccchhhccccC------CCeEEEEEEEEE-c--------cEEEEEEEEEE
Confidence 567888999999888776 3222210 0234445555543 232222111111 1 11222222334
Q ss_pred EEEEeCCCCeEEEEEEeecccceEEEEEEEEEeeCCCCCCCceEEEEEEEEEEec
Q 029961 85 STVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKP 139 (185)
Q Consensus 85 ~s~vD~~~r~m~~~s~Nls~~~~~~v~E~~~Y~~~penp~~~T~~~q~a~i~i~~ 139 (185)
...+|+.. .+.+..............-+..+.|+ ++ .|.++.++.++..+
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~---gT~v~~~~~~~~~g 114 (144)
T cd05018 65 LSDLDPPE-SYTITGEGKGGAGFVKGTARVTLEPD-GG---GTRLTYTADAQVGG 114 (144)
T ss_pred EEecCCCc-EEEEEEEEcCCCceEEEEEEEEEEec-CC---cEEEEEEEEEEEcc
Confidence 45566653 45555443334456678888888887 32 49999999998654
No 21
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins. This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=33.10 E-value=1.8e+02 Score=20.76 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=33.7
Q ss_pred EEeCCC-CeEEEEEEEeeccCChhHHHHhh---CCceEEEEEEEEEe--CCCCeEE
Q 029961 47 KLDPLS-GKLYTTRALTVHAPGPWFVRKII---GQDICHCVESTVVD--AQSKSMQ 96 (185)
Q Consensus 47 ~vd~~~-g~L~t~Rli~~~~~~P~w~~kl~---g~~~~~~~E~s~vD--~~~r~m~ 96 (185)
++|.++ |.+|.-=|++.+-..|..+++.+ |.+.-+.-|...+. |..+.|.
T Consensus 8 s~e~~~~gn~YKSIlltsqDktP~VI~ral~Khnl~~~~~~~Y~L~Q~Lp~d~El~ 63 (87)
T cd00153 8 SLEDDNQGNLYKSILLTSQDKAPQVIRRAMEKHNLESEVAEDYELVQVLPGDRELV 63 (87)
T ss_pred EeecCCCcceEEEEEEecCCcCHHHHHHHHHHhCCCcCCccceEEEEEcCCCceEe
Confidence 455556 99999999999999999999988 33333333444444 4455554
No 22
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=31.65 E-value=55 Score=23.85 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029961 145 SMAEKVELRCAEKFMQNSVKGREV 168 (185)
Q Consensus 145 ~~~~~iE~~~~~rf~~na~kgr~~ 168 (185)
.+.+.||- +++|.++|+.+||.+
T Consensus 6 ~l~~~v~i-f~nRmksns~RGrsI 28 (96)
T PF12210_consen 6 TLRSSVEI-FVNRMKSNSSRGRSI 28 (96)
T ss_dssp HHHHHHHH-HHHHHHHHHHTT--G
T ss_pred HHHHHHHH-HHHHHHHhHhcCCCC
Confidence 46677766 489999999999984
No 23
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.81 E-value=64 Score=25.86 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=20.3
Q ss_pred EEEEEeeccCChhH-HHHhh--CCceEEEE
Q 029961 57 TTRALTVHAPGPWF-VRKII--GQDICHCV 83 (185)
Q Consensus 57 t~Rli~~~~~~P~w-~~kl~--g~~~~~~~ 83 (185)
-+|++.|+.++|.| +...+ |.+.+|+.
T Consensus 165 nt~vvacRFPLP~w~leh~igeG~d~VW~Y 194 (199)
T KOG4058|consen 165 NTRVVACRFPLPTWQLEHAIGEGLDRVWAY 194 (199)
T ss_pred CCeEEEEecCCCccchHhHhhcCcceEEEE
Confidence 37999999999998 45555 44777764
No 24
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=24.98 E-value=40 Score=28.25 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=17.1
Q ss_pred eeEeEEeCCCCeEEEEEEEeeccC
Q 029961 43 TLNHKLDPLSGKLYTTRALTVHAP 66 (185)
Q Consensus 43 vl~r~vd~~~g~L~t~Rli~~~~~ 66 (185)
||.+-|||++|. +|||...+.
T Consensus 171 vIRrVvDpETGR---tRLIkGdGE 191 (225)
T PF10500_consen 171 VIRRVVDPETGR---TRLIKGDGE 191 (225)
T ss_pred hheeeecCCCCc---eeeecccch
Confidence 788889999996 578877664
No 25
>KOG3438 consensus DNA-directed RNA polymerase, subunit L [Transcription]
Probab=22.41 E-value=2.2e+02 Score=21.05 Aligned_cols=75 Identities=21% Similarity=0.230 Sum_probs=38.4
Q ss_pred eCCCCeEEEEEEeecccce-------EEEEEEEEEe-eCCCCCCCceEEEEEEEEEEe-cccchHHHHHHHHHHHHHHHH
Q 029961 89 DAQSKSMQLTTRNVSLKKY-------IEVEEKIRYE-PHPDNPTGWTVCRQETSIRIK-PLSALASMAEKVELRCAEKFM 159 (185)
Q Consensus 89 D~~~r~m~~~s~Nls~~~~-------~~v~E~~~Y~-~~penp~~~T~~~q~a~i~i~-~~~~~~~~~~~iE~~~~~rf~ 159 (185)
|+...+++++----|+.+- .-=.|-|-|+ |||... .-.|+ |+.. +..++ .-|+
T Consensus 14 d~~~~Tf~~~eEDHTlgNalR~vI~k~peVefcGYtIPHPse~--k~niR----IQt~~~~~A~------------evl~ 75 (105)
T KOG3438|consen 14 DLSSATFQLREEDHTLGNALRYVIMKNPEVEFCGYTIPHPSED--KINIR----IQTRDGDPAV------------EVLK 75 (105)
T ss_pred CCCceEEEEEecCcchhHHHHHHHhcCCceEEEeccCCCCchh--hheEE----EEecCCCcch------------HHHH
Confidence 5666666654333332221 1235788998 899752 23332 3333 22222 3344
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 029961 160 QNSVKGREVMERICKYLEAESR 181 (185)
Q Consensus 160 ~na~kgr~~~e~vl~~l~~e~~ 181 (185)
+....+.+.++.|..++.++.+
T Consensus 76 kgl~el~~~c~~v~~kF~~~i~ 97 (105)
T KOG3438|consen 76 KGLEELMQLCDHVRSKFEEEIE 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666677766665543
No 26
>PF11630 DUF3254: Protein of unknown function (DUF3254); InterPro: IPR024509 Anti-lipopolysaccharide factor binds to bacterial LPS and may specifically inhibit the LPS-mediated activation of the hemolymph coagulation. It has a strong antibacterial effect, especially on the growth of Gram-negative bacteria [,]. This entry also includes the antibacterial protein Scygonadin, which has antibacterial activity against the Gram-positive bacterium Micrococcus luteus [].; PDB: 2JOB_A.
Probab=21.49 E-value=2.3e+02 Score=20.77 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=14.7
Q ss_pred CCCCceEEEEEEEEEEecccchHHHHHHHHHHHHH
Q 029961 122 NPTGWTVCRQETSIRIKPLSALASMAEKVELRCAE 156 (185)
Q Consensus 122 np~~~T~~~q~a~i~i~~~~~~~~~~~~iE~~~~~ 156 (185)
.| +||.++-++.-++. .+.+.+.+.+|..+
T Consensus 54 CP-GWT~i~Ges~trs~----sg~~~~a~rDFv~k 83 (100)
T PF11630_consen 54 CP-GWTPIRGESRTRSR----SGVVRKATRDFVRK 83 (100)
T ss_dssp -B-TTBS-EEEEEES-H----HHHHHHHHHHHHHH
T ss_pred cC-CccceeccccccCC----cchhhHHHHHHHHH
Confidence 56 68887777665422 22345555554433
Done!