BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029962
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42749|UBC5_ARATH Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5
PE=2 SV=2
Length = 185
Score = 313 bits (803), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 156/189 (82%), Positives = 168/189 (88%), Gaps = 9/189 (4%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYP 60
MSSPSKRREMDLMKLMMSDYKVEMINDGMQEF+VEF+GPK+S Y+GGVWKIRVELPDAYP
Sbjct: 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYP 60
Query: 61 YKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
YKSPS+GF+ KIYHPNVDE+SGSVCLDVINQTWSPMFDLVNVFE FLPQLLLYPNPSDPL
Sbjct: 61 YKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPL 120
Query: 121 NGEAAALMMRDRTAYDQRVKEFCEKYAKPEDIGGATEEKSSDDEELSEDEYAS-----SD 175
NGEAAALMMRDR Y+QRVKE+CEKYAKP TEE SSDD E+SEDEYAS D
Sbjct: 121 NGEAAALMMRDRPTYEQRVKEYCEKYAKPR---ADTEEMSSDD-EMSEDEYASDGDDEDD 176
Query: 176 EAVAGQPDP 184
A+AG+ DP
Sbjct: 177 VAIAGKLDP 185
>sp|P42748|UBC4_ARATH Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4
PE=2 SV=2
Length = 187
Score = 301 bits (772), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 157/191 (82%), Positives = 167/191 (87%), Gaps = 11/191 (5%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYP 60
MSSPSKRREMD+MKLMMSDYKVE INDGMQEFYVEFNGPK+S YQGGVWKIRVELPDAYP
Sbjct: 1 MSSPSKRREMDMMKLMMSDYKVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYP 60
Query: 61 YKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
YKSPS+GF+ KIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFE FLPQLLLYPNPSDPL
Sbjct: 61 YKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPL 120
Query: 121 NGEAAALMMRDRTAYDQRVKEFCEKYAKPEDIGGATEEKSSDDEELSEDEYASSDE---- 176
NGEAAALMMRDR AY+QRVKE+CEKYAKP G E S DEELSE+EY S +E
Sbjct: 121 NGEAAALMMRDRPAYEQRVKEYCEKYAKP----GEGSEDKSSDEELSEEEYGSDNEDDDD 176
Query: 177 ---AVAGQPDP 184
A+AG+PDP
Sbjct: 177 DDVAIAGKPDP 187
>sp|P16577|UBC4_WHEAT Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4
PE=1 SV=1
Length = 184
Score = 287 bits (735), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 144/184 (78%), Positives = 162/184 (88%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYP 60
MSSPSKRREMDLMKLMMSDYKV+MINDGM EF+V F+GPK+S YQGGVWK+RVEL +AYP
Sbjct: 1 MSSPSKRREMDLMKLMMSDYKVDMINDGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYP 60
Query: 61 YKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
YKSPSIGF NKIYHPNVDE+SGSVCLDVINQTWSPMFDLVN+FEVFLPQLLLYPNPSDPL
Sbjct: 61 YKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPL 120
Query: 121 NGEAAALMMRDRTAYDQRVKEFCEKYAKPEDIGGATEEKSSDDEELSEDEYASSDEAVAG 180
NGEAA+LMMRD+ AY+ +VKE+CE+YAKPEDI EE+ SD+E + Y S DEA+ G
Sbjct: 121 NGEAASLMMRDKNAYENKVKEYCERYAKPEDISPEEEEEESDEELSDAEGYDSGDEAIMG 180
Query: 181 QPDP 184
DP
Sbjct: 181 HADP 184
>sp|P42750|UBC6_ARATH Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6
PE=2 SV=2
Length = 183
Score = 271 bits (693), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 123/152 (80%), Positives = 141/152 (92%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYP 60
M+SPSKRREMD+MKLMMSDYKV+ +ND +Q FYV F+GP +S YQGGVWKI+VELP+AYP
Sbjct: 1 MASPSKRREMDMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYP 60
Query: 61 YKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
YKSPS+GFVNKIYHPNVDE SG+VCLDVINQTWSPMFDL+NVFE FLPQLLLYPNPSDP
Sbjct: 61 YKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPF 120
Query: 121 NGEAAALMMRDRTAYDQRVKEFCEKYAKPEDI 152
NGEAA+L+MRDR AY+ +VKE+CEKYAKPE+I
Sbjct: 121 NGEAASLLMRDRAAYELKVKEYCEKYAKPEEI 152
>sp|Q9P7R4|UBC8_SCHPO Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubc8 PE=3 SV=1
Length = 184
Score = 236 bits (603), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 103/151 (68%), Positives = 128/151 (84%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYP 60
MSSP +R E D+MKL+MSDY+V ++ND MQEFYV F+GP E+ Y GG+WK+ VELP YP
Sbjct: 1 MSSPRRRIETDVMKLLMSDYEVTLVNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYP 60
Query: 61 YKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
+KSPSIGFVN+I+HPN+DELSGSVCLDVINQTWSPMFD++N+FEVFLPQLL YPN SDPL
Sbjct: 61 WKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPL 120
Query: 121 NGEAAALMMRDRTAYDQRVKEFCEKYAKPED 151
NGEAAAL++R+ Y +V+++ +YA ED
Sbjct: 121 NGEAAALLLREPNTYYAKVRDYIARYANKED 151
>sp|P28263|UBC8_YEAST Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBC8 PE=1 SV=2
Length = 218
Score = 211 bits (537), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 122/150 (81%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYP 60
MSS +R E D+MKL+MSD++V++IND MQEF+V+F GPK++ Y+ GVW++ VELPD YP
Sbjct: 1 MSSSKRRIETDVMKLLMSDHQVDLINDSMQEFHVKFLGPKDTPYENGVWRLHVELPDNYP 60
Query: 61 YKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
YKSPSIGFVNKI+HPN+D SGS+CLDVIN TWSP++DL+N+ E +P LL PN SDPL
Sbjct: 61 YKSPSIGFVNKIFHPNIDIASGSICLDVINSTWSPLYDLINIVEWMIPGLLKEPNGSDPL 120
Query: 121 NGEAAALMMRDRTAYDQRVKEFCEKYAKPE 150
N EAA L +RD+ Y++++KE+ +KYA E
Sbjct: 121 NNEAATLQLRDKKLYEEKIKEYIDKYATKE 150
>sp|P62257|UBE2H_MOUSE Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2
SV=1
Length = 183
Score = 197 bits (500), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 89/155 (57%), Positives = 122/155 (78%), Gaps = 4/155 (2%)
Query: 1 MSSPS---KRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPD 57
MSSPS +R + D++KL+ S ++V ++ G+ EF V+F GP+ + Y+GGVWK+RV+LPD
Sbjct: 1 MSSPSPGKRRMDTDVVKLIESKHEVTILG-GLNEFVVKFYGPQGTPYEGGVWKVRVDLPD 59
Query: 58 AYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPS 117
YP+KSPSIGF+NKI+HPN+DE SG+VCLDVINQTW+ ++DL N+FE FLPQLL YPNP
Sbjct: 60 KYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPI 119
Query: 118 DPLNGEAAALMMRDRTAYDQRVKEFCEKYAKPEDI 152
DPLNG+AAA+ + Y Q++KE+ +KYA E +
Sbjct: 120 DPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEAL 154
>sp|P62256|UBE2H_HUMAN Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1
SV=1
Length = 183
Score = 197 bits (500), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 89/155 (57%), Positives = 122/155 (78%), Gaps = 4/155 (2%)
Query: 1 MSSPS---KRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPD 57
MSSPS +R + D++KL+ S ++V ++ G+ EF V+F GP+ + Y+GGVWK+RV+LPD
Sbjct: 1 MSSPSPGKRRMDTDVVKLIESKHEVTILG-GLNEFVVKFYGPQGTPYEGGVWKVRVDLPD 59
Query: 58 AYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPS 117
YP+KSPSIGF+NKI+HPN+DE SG+VCLDVINQTW+ ++DL N+FE FLPQLL YPNP
Sbjct: 60 KYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPI 119
Query: 118 DPLNGEAAALMMRDRTAYDQRVKEFCEKYAKPEDI 152
DPLNG+AAA+ + Y Q++KE+ +KYA E +
Sbjct: 120 DPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEAL 154
>sp|Q32LN1|UBE2H_BOVIN Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1
Length = 183
Score = 197 bits (500), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 89/155 (57%), Positives = 122/155 (78%), Gaps = 4/155 (2%)
Query: 1 MSSPS---KRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPD 57
MSSPS +R + D++KL+ S ++V ++ G+ EF V+F GP+ + Y+GGVWK+RV+LPD
Sbjct: 1 MSSPSPGKRRMDTDVVKLIESKHEVTILG-GLNEFVVKFYGPQGTPYEGGVWKVRVDLPD 59
Query: 58 AYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPS 117
YP+KSPSIGF+NKI+HPN+DE SG+VCLDVINQTW+ ++DL N+FE FLPQLL YPNP
Sbjct: 60 KYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPI 119
Query: 118 DPLNGEAAALMMRDRTAYDQRVKEFCEKYAKPEDI 152
DPLNG+AAA+ + Y Q++KE+ +KYA E +
Sbjct: 120 DPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEAL 154
>sp|Q94490|UBCB_DICDI Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum
GN=ubcB PE=1 SV=1
Length = 148
Score = 103 bits (258), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query: 11 DLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70
D++K S +++D +Q++ GP+ S ++ GV+ + +++P YP+K P++ F
Sbjct: 13 DMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTT 72
Query: 71 KIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMR 130
KIYHPN+ G++C +V + TWSP +++V + +L PNP +PL E A
Sbjct: 73 KIYHPNIKTSDGAICAEVFS-TWSPQLKILDVLTT-IRSILTDPNPDNPLETEIAQQFKT 130
Query: 131 DRTAYDQRVKEFCEKYAK 148
DR A+++ KE+ +KYAK
Sbjct: 131 DRNAFNKTAKEWTKKYAK 148
>sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans
GN=let-70 PE=1 SV=1
Length = 147
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP ES YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y+Q +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|P62840|UB2D2_XENLA Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1
SV=1
Length = 147
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|P62839|UB2D2_RAT Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2
PE=1 SV=1
Length = 147
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|P62838|UB2D2_MOUSE Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1
SV=1
Length = 147
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|P62837|UB2D2_HUMAN Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1
SV=1
Length = 147
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|Q1RMX2|UB2D2_BOVIN Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2
SV=1
Length = 147
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|D3ZDK2|UB2D1_RAT Ubiquitin-conjugating enzyme E2 D1 OS=Rattus norvegicus GN=Ube2d1
PE=1 SV=1
Length = 147
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S+YQGGV+ + V P YP+K P I F KIYHPN++ +GS+
Sbjct: 26 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL + A + D+ Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTVSKVL-LSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2
SV=1
Length = 147
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S+YQGGV+ + V P YP+K P I F KIYHPN++ +GS+
Sbjct: 26 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL + A + D+ Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTVSKVL-LSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|P51668|UB2D1_HUMAN Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1
SV=1
Length = 147
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S+YQGGV+ + V P YP+K P I F KIYHPN++ +GS+
Sbjct: 26 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL + A + D+ Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTVSKVL-LSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|Q2TA10|UB2D1_BOVIN Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2
SV=1
Length = 147
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S+YQGGV+ + V P YP+K P I F KIYHPN++ +GS+
Sbjct: 26 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL + A + D+ Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTVSKVL-LSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3
PE=2 SV=1
Length = 147
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|Q5R4V7|UB2D3_PONAB Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2
SV=1
Length = 147
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|P61079|UB2D3_MOUSE Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=1
SV=1
Length = 147
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|Q4R5N4|UB2D3_MACFA Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3
PE=2 SV=1
Length = 147
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|P61077|UB2D3_HUMAN Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1
SV=1
Length = 147
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|Q06AA9|UB2D2_PIG Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2
SV=1
Length = 147
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|Q9Y2X8|UB2D4_HUMAN Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1
SV=1
Length = 147
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S YQGGV+ + + P YP+K P + F KIYHPN++ +GS+
Sbjct: 26 VGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A DR Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTVSKVL-LSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|P25867|UBCD1_DROME Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster
GN=eff PE=2 SV=1
Length = 147
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y++ +E+
Sbjct: 85 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTR 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|P70711|U2D2B_RAT Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b
PE=1 SV=1
Length = 147
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ + M + GP +S YQGG + + ++ P YP+K P + F +IYHPNV+ +GS+
Sbjct: 26 VGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVL-LSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|Q6ZWY6|U2D2B_MOUSE Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2
SV=1
Length = 147
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ + M + GP +S YQGG + + ++ P YP+K P + F +IYHPNV+ +GS+
Sbjct: 26 VGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVL-LSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|P52490|UBC13_YEAST Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBC13 PE=1 SV=1
Length = 153
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 75/123 (60%), Gaps = 2/123 (1%)
Query: 26 NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVC 85
+D ++ F V GP++S Y+ G++++ + LPD YP ++P + F+ KIYHPN+D L G +C
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL-GRIC 87
Query: 86 LDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEK 145
LDV+ WSP + V + + LL PNP+DPL + A +++ + +E+ +
Sbjct: 88 LDVLKTNWSPALQIRTVL-LSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKL 146
Query: 146 YAK 148
YAK
Sbjct: 147 YAK 149
>sp|P35134|UBC11_ARATH Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11
PE=2 SV=2
Length = 148
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Query: 1 MSSPSKRREM-DLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAY 59
M+S +E+ DL K S+ + + M + GP ES Y GGV+ + + P Y
Sbjct: 1 MASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDY 60
Query: 60 PYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDP 119
P+K P + F K+YHPN++ +GS+CLD++ + WSP + V + + LL PNP DP
Sbjct: 61 PFKPPKVSFKTKVYHPNINS-NGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDP 118
Query: 120 LNGEAAALMMRDRTAYDQRVKEFCEKYA 147
L E A + DR+ Y+ + + +KYA
Sbjct: 119 LVPEIAHMYKTDRSKYESTARSWTQKYA 146
>sp|Q3ZCF7|UB2D3_BOVIN Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2
SV=1
Length = 147
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ + S+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NDSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|P52478|UBC1_CAEEL Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans
GN=ubc-1 PE=1 SV=1
Length = 192
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEM----INDGMQEFYVEFNGPKESSYQGGVWKIRVELP 56
M++PS+RR M K + D + D + + GP+E+ ++ G +K+ +E
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 57 DAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNP 116
+ YP K P++ F++K++HPNV GS+CLD++ WSP +D+ + + LL PNP
Sbjct: 61 EEYPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVAAIL-TSIQSLLDEPNP 118
Query: 117 SDPLNGEAAALMMRDRTAYDQRVKEFCEK 145
+ P N AA L +R Y++RV++ E+
Sbjct: 119 NSPANSLAAQLYQENRREYEKRVQQIVEQ 147
>sp|A5PKP9|UB2D4_XENLA Ubiquitin-conjugating enzyme E2 D4 OS=Xenopus laevis GN=ube2d4 PE=1
SV=1
Length = 147
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 2/142 (1%)
Query: 6 KRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPS 65
++ MDL + + + + + + GP +S +QGGV+ + + P YP+K P
Sbjct: 7 QKELMDLQRDPPAQCSAGPVGEDLFHWQATIMGPNDSPFQGGVFFLTIHFPTDYPFKPPK 66
Query: 66 IGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAA 125
+ F KIYHPN++ +GS+CLD++ WSP + V + + LL PNP DPL E A
Sbjct: 67 VAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVL-LSICSLLCDPNPDDPLVPEIA 124
Query: 126 ALMMRDRTAYDQRVKEFCEKYA 147
DR Y++ +E+ +KYA
Sbjct: 125 HTYKADREKYNRLAREWTQKYA 146
>sp|P15732|UBC5_YEAST Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBC5 PE=1 SV=1
Length = 148
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S Y GGV+ + + P YP+K P + F KIYHPN++ SG++
Sbjct: 27 VGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINS-SGNI 85
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP L V + + LL NP DPL E A + D+ Y+ KE+ +
Sbjct: 86 CLDILKDQWSPALTLSKVL-LSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKEWTK 144
Query: 145 KYA 147
KYA
Sbjct: 145 KYA 147
>sp|P46595|UBC4_SCHPO Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubc4 PE=2 SV=1
Length = 147
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 7 RREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSI 66
R DL K S + D + + GP +S Y GGV+ + + P YP+K P +
Sbjct: 8 RELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKV 67
Query: 67 GFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAA 126
F +IYHPN++ +GS+CLD++ WSP + V + + LL PNP DPL E A
Sbjct: 68 NFTTRIYHPNINS-NGSICLDILRDQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAH 125
Query: 127 LMMRDRTAYDQRVKEFCEKYA 147
+ DR+ Y+ +E+ KYA
Sbjct: 126 VYKTDRSRYELSAREWTRKYA 146
>sp|P35131|UBC8_ARATH Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8
PE=1 SV=1
Length = 148
Score = 96.7 bits (239), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ + M + GP ES Y GGV+ + + P YP+K P + F K++HPN++ +GS+
Sbjct: 26 VAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ + WSP + V + + LL PNP DPL E A + DR Y+ + + +
Sbjct: 85 CLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|P35128|UBE2N_DROME Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben
PE=2 SV=1
Length = 151
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 32 FYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQ 91
F+V GP +S ++GGV+K+ + LP+ YP +P + F+ KIYHPN+D L G +CLDV+
Sbjct: 35 FHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRL-GRICLDVLKD 93
Query: 92 TWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEKYA 147
WSP + + + + LL PNP DPL + A L + + +E+ +KYA
Sbjct: 94 KWSPALQIRTIL-LSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKYA 148
>sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28
PE=2 SV=1
Length = 148
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ + M + GP +S Y GGV+ + + P YP+K P + F K++HPNV+ +GS+
Sbjct: 26 VAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ + WSP + V + + LL PNP DPL E A + DR Y+ + + +
Sbjct: 85 CLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|P15731|UBC4_YEAST Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBC4 PE=1 SV=1
Length = 148
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S Y GGV+ + + P YP+K P I F KIYHPN++ +G++
Sbjct: 27 VGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINA-NGNI 85
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ WSP L V + + LL NP DPL E A + DR Y+ +E+ +
Sbjct: 86 CLDILKDQWSPALTLSKVL-LSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTK 144
Query: 145 KYA 147
KYA
Sbjct: 145 KYA 147
>sp|Q9FKT3|UBC30_ARATH Ubiquitin-conjugating enzyme E2 30 OS=Arabidopsis thaliana GN=UBC30
PE=2 SV=1
Length = 148
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 27 DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCL 86
D M ++ GP +S + GGV+ + + P YP+K P + F K+YHPN++ +GS+CL
Sbjct: 28 DDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINS-NGSICL 86
Query: 87 DVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEKY 146
D++ + WSP + V + + LL PNP DPL E A + DR Y+ + + +KY
Sbjct: 87 DILKEQWSPALTVSKVL-LSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKY 145
Query: 147 A 147
A
Sbjct: 146 A 146
>sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2
SV=1
Length = 148
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ + M + GP +S Y GGV+ + + P YP+K P + F K++HPN++ +GS+
Sbjct: 26 VAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ + WSP + V + + LL PNP DPL E A + DR Y+ + + +
Sbjct: 85 CLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10
PE=1 SV=1
Length = 148
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ + M + GP ES Y GGV+ + + P YP+K P + F K++HPN++ +GS+
Sbjct: 26 VAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCE 144
CLD++ + WSP + V + + LL PNP DPL E A + D+ Y+ + + +
Sbjct: 85 CLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>sp|O74810|UBC1_SCHPO Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubc1 PE=3 SV=2
Length = 217
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Query: 11 DLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70
D+ + + +V IND + F GP+ + Y+GG + + +E+P YP++ P + F
Sbjct: 15 DVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDT 74
Query: 71 KIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMR 130
KIYHPNV +G++CLD++ WSP++ + + + L LL P PS+P + + A + ++
Sbjct: 75 KIYHPNVSSQTGAICLDILKDQWSPVYTMKSAL-ISLQSLLCTPEPSNPQDAQVAQVYLQ 133
Query: 131 DRTAYDQRVKEFCEKYA 147
+ + + +E+ YA
Sbjct: 134 NYQQFVRTAREWTSSYA 150
>sp|Q9VTY6|UBE2C_DROME Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih
PE=1 SV=1
Length = 178
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 85/145 (58%), Gaps = 6/145 (4%)
Query: 5 SKRREMDLMKLMMSDYK-VEMINDGMQEF-YV-EFNGPKESSYQGGVWKIRVELPDAYPY 61
SKR +LM LMM++ + + DG F +V GP+ + Y G +++ ++ P++YPY
Sbjct: 34 SKRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPY 93
Query: 62 KSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLN 121
+P + F+ +HPNVD L G++CLD++ WS ++D+ + + + LL PN PLN
Sbjct: 94 AAPVVKFLTSCFHPNVD-LQGAICLDILKDKWSALYDVRTIL-LSIQSLLGEPNNESPLN 151
Query: 122 GEAAALMMRDRTAYDQRVKEFCEKY 146
+ AA+M D+ Y + + F EK+
Sbjct: 152 AQ-AAMMWNDQKEYKKYLDAFYEKH 175
>sp|P63149|UBE2B_RAT Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b
PE=2 SV=1
Length = 152
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 87/150 (58%), Gaps = 8/150 (5%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMI-----NDGMQEFYVEFNGPKESSYQGGVWKIRVEL 55
MS+P++RR M K + D V + N+ MQ V F GP+ + ++ G +K+ +E
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIF-GPEGTPFEDGTFKLVIEF 59
Query: 56 PDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPN 115
+ YP K P++ F++K++HPNV GS+CLD++ WSP +D+ ++ + LL PN
Sbjct: 60 SEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSIL-TSIQSLLDEPN 117
Query: 116 PSDPLNGEAAALMMRDRTAYDQRVKEFCEK 145
P+ P N +AA L ++ Y++RV E+
Sbjct: 118 PNSPANSQAAQLYQENKREYEKRVSAIVEQ 147
>sp|P63148|UBE2B_RABIT Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B
PE=2 SV=1
Length = 152
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 87/150 (58%), Gaps = 8/150 (5%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMI-----NDGMQEFYVEFNGPKESSYQGGVWKIRVEL 55
MS+P++RR M K + D V + N+ MQ V F GP+ + ++ G +K+ +E
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIF-GPEGTPFEDGTFKLVIEF 59
Query: 56 PDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPN 115
+ YP K P++ F++K++HPNV GS+CLD++ WSP +D+ ++ + LL PN
Sbjct: 60 SEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSIL-TSIQSLLDEPN 117
Query: 116 PSDPLNGEAAALMMRDRTAYDQRVKEFCEK 145
P+ P N +AA L ++ Y++RV E+
Sbjct: 118 PNSPANSQAAQLYQENKREYEKRVSAIVEQ 147
>sp|P63147|UBE2B_MOUSE Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1
SV=1
Length = 152
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 87/150 (58%), Gaps = 8/150 (5%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMI-----NDGMQEFYVEFNGPKESSYQGGVWKIRVEL 55
MS+P++RR M K + D V + N+ MQ V F GP+ + ++ G +K+ +E
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIF-GPEGTPFEDGTFKLVIEF 59
Query: 56 PDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPN 115
+ YP K P++ F++K++HPNV GS+CLD++ WSP +D+ ++ + LL PN
Sbjct: 60 SEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSIL-TSIQSLLDEPN 117
Query: 116 PSDPLNGEAAALMMRDRTAYDQRVKEFCEK 145
P+ P N +AA L ++ Y++RV E+
Sbjct: 118 PNSPANSQAAQLYQENKREYEKRVSAIVEQ 147
>sp|P63146|UBE2B_HUMAN Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1
SV=1
Length = 152
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 87/150 (58%), Gaps = 8/150 (5%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMI-----NDGMQEFYVEFNGPKESSYQGGVWKIRVEL 55
MS+P++RR M K + D V + N+ MQ V F GP+ + ++ G +K+ +E
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIF-GPEGTPFEDGTFKLVIEF 59
Query: 56 PDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPN 115
+ YP K P++ F++K++HPNV GS+CLD++ WSP +D+ ++ + LL PN
Sbjct: 60 SEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSIL-TSIQSLLDEPN 117
Query: 116 PSDPLNGEAAALMMRDRTAYDQRVKEFCEK 145
P+ P N +AA L ++ Y++RV E+
Sbjct: 118 PNSPANSQAAQLYQENKREYEKRVSAIVEQ 147
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,809,350
Number of Sequences: 539616
Number of extensions: 3265011
Number of successful extensions: 9257
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 8589
Number of HSP's gapped (non-prelim): 376
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)