Query 029962
Match_columns 184
No_of_seqs 143 out of 1320
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 1.6E-51 3.4E-56 310.5 14.3 144 4-149 2-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.7E-50 3.6E-55 310.6 16.7 146 1-148 1-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 8.4E-47 1.8E-51 291.8 18.2 146 1-149 1-149 (152)
4 KOG0419 Ubiquitin-protein liga 100.0 3.2E-47 6.9E-52 280.4 14.1 145 1-147 1-149 (152)
5 PLN00172 ubiquitin conjugating 100.0 6.1E-46 1.3E-50 285.7 17.6 142 5-148 3-147 (147)
6 KOG0416 Ubiquitin-protein liga 100.0 8.3E-45 1.8E-49 278.0 12.7 154 1-154 1-154 (189)
7 KOG0418 Ubiquitin-protein liga 100.0 2.4E-43 5.2E-48 274.0 14.5 149 1-150 1-155 (200)
8 KOG0425 Ubiquitin-protein liga 100.0 7.6E-42 1.6E-46 258.6 15.4 142 4-147 6-164 (171)
9 KOG0424 Ubiquitin-protein liga 100.0 9.5E-42 2.1E-46 254.7 14.8 146 1-148 1-157 (158)
10 PF00179 UQ_con: Ubiquitin-con 100.0 2E-40 4.4E-45 252.4 13.9 135 7-143 1-140 (140)
11 KOG0421 Ubiquitin-protein liga 100.0 9.2E-41 2E-45 249.5 11.2 140 4-146 30-172 (175)
12 KOG0426 Ubiquitin-protein liga 100.0 7E-40 1.5E-44 241.7 13.6 144 1-146 1-162 (165)
13 cd00195 UBCc Ubiquitin-conjuga 100.0 1E-39 2.2E-44 249.0 15.1 136 6-143 2-141 (141)
14 smart00212 UBCc Ubiquitin-conj 100.0 6.9E-39 1.5E-43 245.4 16.5 140 6-147 1-145 (145)
15 KOG0422 Ubiquitin-protein liga 100.0 4.4E-36 9.6E-41 223.3 13.8 145 4-151 3-152 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 4.4E-35 9.6E-40 224.9 11.7 144 4-150 29-177 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 8.9E-34 1.9E-38 218.0 9.2 152 4-157 11-165 (223)
18 KOG0894 Ubiquitin-protein liga 100.0 7.7E-28 1.7E-32 191.0 13.6 131 1-136 1-143 (244)
19 KOG0427 Ubiquitin conjugating 99.9 1.2E-27 2.5E-32 176.7 10.0 114 4-120 16-134 (161)
20 KOG0429 Ubiquitin-conjugating 99.9 2.6E-22 5.6E-27 160.0 13.5 129 16-146 35-168 (258)
21 KOG0428 Non-canonical ubiquiti 99.8 1.2E-20 2.5E-25 152.8 9.2 109 4-115 12-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.6 2.9E-15 6.3E-20 141.1 9.8 106 6-113 850-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.5 1E-13 2.2E-18 130.8 10.2 108 4-113 283-404 (1101)
24 KOG0896 Ubiquitin-conjugating 99.4 4.1E-13 8.8E-18 100.0 8.0 107 4-111 6-121 (138)
25 KOG0897 Predicted ubiquitin-co 98.4 6.2E-07 1.4E-11 65.3 5.3 93 49-144 13-111 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.3 3.7E-06 8E-11 63.5 7.1 66 45-112 34-105 (133)
27 PF05743 UEV: UEV domain; Int 97.7 8.7E-05 1.9E-09 55.3 5.5 77 29-112 32-116 (121)
28 PF08694 UFC1: Ubiquitin-fold 96.6 0.00057 1.2E-08 51.9 0.2 93 5-103 26-135 (161)
29 PF14462 Prok-E2_E: Prokaryoti 96.6 0.024 5.2E-07 42.3 8.7 92 14-111 8-119 (122)
30 KOG2391 Vacuolar sorting prote 96.4 0.025 5.5E-07 48.8 9.2 79 28-113 51-137 (365)
31 PF05773 RWD: RWD domain; Int 95.5 0.035 7.6E-07 39.5 5.1 65 6-71 4-73 (113)
32 smart00591 RWD domain in RING 93.9 0.44 9.5E-06 33.5 7.4 26 45-70 39-64 (107)
33 PF14457 Prok-E2_A: Prokaryoti 91.2 0.32 7E-06 38.0 4.0 60 50-111 56-124 (162)
34 KOG3357 Uncharacterized conser 91.1 0.36 7.8E-06 36.4 4.0 95 5-103 29-138 (167)
35 KOG0309 Conserved WD40 repeat- 90.4 1.1 2.5E-05 42.8 7.5 65 5-70 422-490 (1081)
36 KOG4018 Uncharacterized conser 78.8 5.9 0.00013 32.3 5.5 35 32-68 33-70 (215)
37 PF09765 WD-3: WD-repeat regio 77.4 6.4 0.00014 33.6 5.6 78 6-105 102-181 (291)
38 PF06113 BRE: Brain and reprod 56.4 16 0.00034 31.9 3.8 28 46-74 305-332 (333)
39 PF15243 ANAPC15: Anaphase-pro 55.0 52 0.0011 23.3 5.6 29 118-148 22-50 (92)
40 PF03366 YEATS: YEATS family; 45.9 64 0.0014 22.2 4.9 43 30-74 2-44 (84)
41 PF09606 Med15: ARC105 or Med1 39.1 10 0.00022 36.9 0.0 26 46-71 713-738 (799)
42 cd00421 intradiol_dioxygenase 38.4 46 0.00099 25.1 3.6 24 46-69 65-89 (146)
43 cd03457 intradiol_dioxygenase_ 35.6 52 0.0011 26.2 3.6 24 46-69 86-109 (188)
44 PF06113 BRE: Brain and reprod 32.0 66 0.0014 28.1 3.9 42 30-77 54-96 (333)
45 KOG1991 Nuclear transport rece 30.2 1.3E+02 0.0028 30.1 5.8 21 93-114 830-850 (1010)
46 KOG3214 Uncharacterized Zn rib 29.5 28 0.00061 25.1 1.0 27 150-176 82-108 (109)
47 PF05470 eIF-3c_N: Eukaryotic 28.7 61 0.0013 30.6 3.3 20 134-153 119-138 (595)
48 cd03459 3,4-PCD Protocatechuat 28.0 86 0.0019 24.2 3.6 24 46-69 72-100 (158)
49 PF12652 CotJB: CotJB protein; 27.7 1.4E+02 0.0029 20.4 4.1 38 117-154 24-61 (78)
50 smart00340 HALZ homeobox assoc 26.5 46 0.00099 20.2 1.4 11 5-15 21-31 (44)
51 PF14460 Prok-E2_D: Prokaryoti 26.4 1.1E+02 0.0023 23.9 3.9 41 70-114 90-133 (175)
52 KOG1832 HIV-1 Vpr-binding prot 23.9 48 0.001 33.1 1.8 6 31-36 1251-1256(1516)
53 PF09943 DUF2175: Uncharacteri 23.8 75 0.0016 22.9 2.3 20 30-51 1-20 (101)
54 KOG0662 Cyclin-dependent kinas 23.7 64 0.0014 26.3 2.2 54 61-115 167-223 (292)
55 TIGR03737 PRTRC_B PRTRC system 23.4 1.3E+02 0.0028 24.8 4.0 35 71-111 132-170 (228)
56 PF13950 Epimerase_Csub: UDP-g 23.1 79 0.0017 20.3 2.2 15 91-105 36-50 (62)
57 COG3866 PelB Pectate lyase [Ca 21.1 1.5E+02 0.0033 25.8 4.0 40 30-70 197-240 (345)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-51 Score=310.48 Aligned_cols=144 Identities=35% Similarity=0.713 Sum_probs=139.4
Q ss_pred hHHHHHHHHHhc---CCCCcEEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccccCC
Q 029962 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (184)
Q Consensus 4 a~~Rl~kEl~~l---~~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
+.+||.||++++ +++|+++.+.++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+ .
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~-~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID-S 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC-c
Confidence 347999999877 789999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEEccccCCccccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 029962 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEKYAKP 149 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~~~k~a~~ 149 (184)
+|.||+++|+..|+|+++|.+||++ |++||.+||+++|++.+++++|++|+.+|+++||+||+|||+.
T Consensus 81 ~G~IclDILk~~WsPAl~i~~Vlls-I~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLS-ICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHH-HHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999974
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-50 Score=310.57 Aligned_cols=146 Identities=41% Similarity=0.822 Sum_probs=140.8
Q ss_pred CCC--hHHHHHHHHHhc---CCCCcEEEeccC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccc
Q 029962 1 MSS--PSKRREMDLMKL---MMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (184)
Q Consensus 1 Mss--a~~Rl~kEl~~l---~~~~i~v~~~~~-n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (184)
|++ |.+||++|++++ +++++++.+..+ |+++|+++|.||.+||||||+|++.|.||++||++||+|+|+++|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 455 899999999988 568999999988 99999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCeEEccccCCccccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 029962 75 PNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEKYAK 148 (184)
Q Consensus 75 PnV~~~~G~icl~~l~~~W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~~~k~a~ 148 (184)
|||+ .+|+||+++|.+.|+|+++|.+||++ |++||.+||.++|+|.+|+++|++|+++|.++||+++++|+.
T Consensus 81 PNV~-~~G~vCLdIL~~~WsP~~~l~sILls-l~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 81 PNVD-PSGNVCLDILKDRWSPVYTLETILLS-LQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCcC-CCCCChhHHHhCCCCccccHHHHHHH-HHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999 69999999999999999999999998 999999999999999999999999999999999999999986
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=8.4e-47 Score=291.83 Aligned_cols=146 Identities=35% Similarity=0.683 Sum_probs=140.5
Q ss_pred CCChHHHHHHHHHhc---CCCCcEEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccc
Q 029962 1 MSSPSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (184)
Q Consensus 1 Mssa~~Rl~kEl~~l---~~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 77 (184)
|+ +.+||++|++.+ ++.|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 1 ~~-~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV 79 (152)
T PTZ00390 1 MS-ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79 (152)
T ss_pred Cc-HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence 45 589999999988 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEccccCCccccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcCC
Q 029962 78 DELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEKYAKP 149 (184)
Q Consensus 78 ~~~~G~icl~~l~~~W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~~~k~a~~ 149 (184)
+. +|.||+++|.+.|+|++||.+||++ |++||.+|++++|+|.+||++|++|+..|.++||+|+++||..
T Consensus 80 ~~-~G~iCl~iL~~~W~p~~ti~~iL~~-i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 80 DK-LGRICLDILKDKWSPALQIRTVLLS-IQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CC-CCeEECccCcccCCCCCcHHHHHHH-HHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 95 9999999999999999999999998 9999999999999999999999999999999999999999984
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-47 Score=280.36 Aligned_cols=145 Identities=34% Similarity=0.715 Sum_probs=140.2
Q ss_pred CCC-hHHHHHHHHHhc---CCCCcEEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccc
Q 029962 1 MSS-PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (184)
Q Consensus 1 Mss-a~~Rl~kEl~~l---~~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (184)
|++ |.+||.++++++ ++.||+..|.++|++.|.++|+||.+|||+||+|++.|.|+++||.+||.|+|++.+||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 888 889999999988 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccccCCccccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHc
Q 029962 77 VDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEKYA 147 (184)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~~~k~a 147 (184)
|+. +|.+|+++|...|+|.|++.+||.+ ||+||.+|++++|+|.+||++|++|+.+|.++||..+.+.-
T Consensus 81 vya-~G~iClDiLqNrWsp~Ydva~ILts-iQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw 149 (152)
T KOG0419|consen 81 VYA-DGSICLDILQNRWSPTYDVASILTS-IQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSW 149 (152)
T ss_pred cCC-CCcchHHHHhcCCCCchhHHHHHHH-HHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhh
Confidence 994 8999999999999999999999999 99999999999999999999999999999999999988753
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=6.1e-46 Score=285.65 Aligned_cols=142 Identities=33% Similarity=0.713 Sum_probs=137.3
Q ss_pred HHHHHHHHHhc---CCCCcEEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccccCCC
Q 029962 5 SKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (184)
Q Consensus 5 ~~Rl~kEl~~l---~~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~ 81 (184)
.+||++|++++ +++|+.+.+.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|||||+. +
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~-~ 81 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS-N 81 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC-C
Confidence 59999999887 6789999999999999999999999999999999999999999999999999999999999994 9
Q ss_pred CeEEccccCCccccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 029962 82 GSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEKYAK 148 (184)
Q Consensus 82 G~icl~~l~~~W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~~~k~a~ 148 (184)
|.||+++|.+.|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~~-i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLLS-ISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHHH-HHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999998 999999999999999999999999999999999999999984
No 6
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-45 Score=278.02 Aligned_cols=154 Identities=72% Similarity=1.281 Sum_probs=150.3
Q ss_pred CCChHHHHHHHHHhcCCCCcEEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccccCC
Q 029962 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (184)
Q Consensus 1 Mssa~~Rl~kEl~~l~~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
|++..|||..|+++|..++..|...++++++++|.+.||.+|||+||+++++|.+|++||++.|.|.|+++||||||+..
T Consensus 1 ms~~~rRid~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 1 MSSGKRRIDTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred CCCcccchhhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEccccCCccccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcCCCCCCC
Q 029962 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEKYAKPEDIGG 154 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~~~k~a~~~~~~~ 154 (184)
+|.|||+.++..|+|.+.|..|+..+|-+||..||+.+|+|.+||.+|.+++++|.++||++++|||++....+
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~~~~~ 154 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPEALKE 154 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987555
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-43 Score=274.00 Aligned_cols=149 Identities=29% Similarity=0.649 Sum_probs=144.4
Q ss_pred CCChHHHHHHHHHhc---C---CCCcEEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccc
Q 029962 1 MSSPSKRREMDLMKL---M---MSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (184)
Q Consensus 1 Mssa~~Rl~kEl~~l---~---~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (184)
|+.+.+||++|+++. + ..||.+++.++|+.+.++.|.||++||||||+|.+.|++|++|||+||+|+|.|+|||
T Consensus 1 m~~~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH 80 (200)
T KOG0418|consen 1 MSNAFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH 80 (200)
T ss_pred CccHHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence 777899999999987 2 5689999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCeEEccccCCccccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcCCC
Q 029962 75 PNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEKYAKPE 150 (184)
Q Consensus 75 PnV~~~~G~icl~~l~~~W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~~~k~a~~~ 150 (184)
|||...+|.||++++++.|++++||+++|++ ||++|..|++.+|....+|++|.+|++.|.+.||.|+..||..+
T Consensus 81 PnVSs~tGaICLDilkd~Wa~slTlrtvLis-lQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~~ 155 (200)
T KOG0418|consen 81 PNVSSQTGAICLDILKDQWAASLTLRTVLIS-LQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGGR 155 (200)
T ss_pred CCCCcccccchhhhhhcccchhhhHHHHHHH-HHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999 99999999999999999999999999999999999999999987
No 8
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-42 Score=258.63 Aligned_cols=142 Identities=26% Similarity=0.565 Sum_probs=130.2
Q ss_pred hHHHHHHHHHhc---CCCCcEEEeccC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccccC
Q 029962 4 PSKRREMDLMKL---MMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (184)
Q Consensus 4 a~~Rl~kEl~~l---~~~~i~v~~~~~-n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (184)
+..-|+++|++| +..|+++.+.++ |+++|.|.|+||++|+|+||.|+..+.||.+||.+||+++|++.+|||||+
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy- 84 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY- 84 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC-
Confidence 334455555555 788999988876 999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccccC-------------CccccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 029962 80 LSGSVCLDVIN-------------QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEKY 146 (184)
Q Consensus 80 ~~G~icl~~l~-------------~~W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~~~k~ 146 (184)
.+|.+|++||- +.|.|.+|+++||++ |-+||.+||.++|+|.+||+.|++|+++|.++|++++++.
T Consensus 85 ~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllS-iIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 85 EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLS-IISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHH-HHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 59999999984 579999999999999 9999999999999999999999999999999999999875
Q ss_pred c
Q 029962 147 A 147 (184)
Q Consensus 147 a 147 (184)
.
T Consensus 164 ~ 164 (171)
T KOG0425|consen 164 Q 164 (171)
T ss_pred H
Confidence 3
No 9
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-42 Score=254.74 Aligned_cols=146 Identities=29% Similarity=0.582 Sum_probs=138.1
Q ss_pred CCC-hHHHHHHHHHhc---CCCCcEEEecc-----CCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecc
Q 029962 1 MSS-PSKRREMDLMKL---MMSDYKVEMIN-----DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (184)
Q Consensus 1 Mss-a~~Rl~kEl~~l---~~~~i~v~~~~-----~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (184)
||+ +..||+.|-+.+ .+-|+.+.|.. .|++.|.|.|.|+.+|+||||.|.+++.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 777 899999998876 67799999875 379999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCeEEccccCCc--cccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 029962 72 IYHPNVDELSGSVCLDVINQT--WSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEKYAK 148 (184)
Q Consensus 72 i~HPnV~~~~G~icl~~l~~~--W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~~~k~a~ 148 (184)
+|||||++ +|.|||++|.+. |+|+.||.+||.. ||.||..||+.+|+|.+|...|.+|+..|.++||.++++||.
T Consensus 81 l~HPNVyp-sgtVcLsiL~e~~~W~paitikqiL~g-IqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 81 LFHPNVYP-SGTVCLSILNEEKDWRPAITIKQILLG-IQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CcCCCcCC-CCcEehhhhccccCCCchhhHHHHHHH-HHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 99999996 999999999864 9999999999998 999999999999999999999999999999999999999986
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2e-40 Score=252.42 Aligned_cols=135 Identities=36% Similarity=0.784 Sum_probs=123.9
Q ss_pred HHHHHHHhc---CCCCcEEEeccC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccccCCCC
Q 029962 7 RREMDLMKL---MMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSG 82 (184)
Q Consensus 7 Rl~kEl~~l---~~~~i~v~~~~~-n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G 82 (184)
||++|++.+ ++.|+.+.+.++ |+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|++|||||+ .+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-ccc
Confidence 899999877 788999999987 999999999999999999999999999999999999999999999999999 699
Q ss_pred eEEccccCC-ccccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 029962 83 SVCLDVINQ-TWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFC 143 (184)
Q Consensus 83 ~icl~~l~~-~W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~~ 143 (184)
.||+++|.. .|+|+++|.+||.+ |+++|.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~~-i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILLS-IQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHHH-HHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred cchhhhhhcccCCcccccccHHHH-HHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999985 59999999999998 9999999999999999999999999999999999984
No 11
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-41 Score=249.54 Aligned_cols=140 Identities=33% Similarity=0.670 Sum_probs=133.2
Q ss_pred hHHHHHHHHHhc---CCCCcEEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccccCC
Q 029962 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (184)
Q Consensus 4 a~~Rl~kEl~~l---~~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
..|||++||+.| ..+||++.|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+|++|||||+ .
T Consensus 30 V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD-~ 108 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD-L 108 (175)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc-c
Confidence 579999999998 357899999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEEccccCCccccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 029962 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEKY 146 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~~~k~ 146 (184)
.|.||++||++.|+..+.++.||++ ||+||-+||..+|+|..||+++. |.++|++.+.+.-++.
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILLS-iQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILLS-IQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHHH-HHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999 99999999999999999999997 9999999998776543
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-40 Score=241.73 Aligned_cols=144 Identities=26% Similarity=0.537 Sum_probs=136.3
Q ss_pred CCC-hHHHHHHHHHhc---CCCCcEEEecc-CCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccc
Q 029962 1 MSS-PSKRREMDLMKL---MMSDYKVEMIN-DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (184)
Q Consensus 1 Mss-a~~Rl~kEl~~l---~~~~i~v~~~~-~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 75 (184)
|+. |.|||++|+++| ++.||.+.|.+ +|++.|.|.|.||++|+|+||+|..++.||.+||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 666 899999999998 78899998865 6899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEccccC-------------CccccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 029962 76 NVDELSGSVCLDVIN-------------QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEF 142 (184)
Q Consensus 76 nV~~~~G~icl~~l~-------------~~W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~ 142 (184)
||+ .+|++|+++|. +.|+|.++++.||++ +.+||.+||.++++|.+|+.+++.|+.+|.+.||..
T Consensus 81 Niy-~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLS-V~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~l 158 (165)
T KOG0426|consen 81 NIY-PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLS-VVSMLAEPNDESGANVDACKMWREDREEFEKIAKRL 158 (165)
T ss_pred ccc-CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHH-HHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHH
Confidence 999 59999999984 589999999999999 999999999999999999999999999999999999
Q ss_pred HHHH
Q 029962 143 CEKY 146 (184)
Q Consensus 143 ~~k~ 146 (184)
++|.
T Consensus 159 vrKt 162 (165)
T KOG0426|consen 159 VRKT 162 (165)
T ss_pred HHHh
Confidence 9875
No 13
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1e-39 Score=248.96 Aligned_cols=136 Identities=40% Similarity=0.809 Sum_probs=130.3
Q ss_pred HHHHHHHHhc---CCCCcEEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccccCCCC
Q 029962 6 KRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSG 82 (184)
Q Consensus 6 ~Rl~kEl~~l---~~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G 82 (184)
|||++|++.+ ++.|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+ .+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-ENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CCC
Confidence 7999998877 567999999999999999999999999999999999999999999999999999999999999 699
Q ss_pred eEEccccCCc-cccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 029962 83 SVCLDVINQT-WSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFC 143 (184)
Q Consensus 83 ~icl~~l~~~-W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~~ 143 (184)
.||++++... |+|+++|.+||.+ |+++|.+|+.++|+|.+|+++|++|+++|.++||.|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~-i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLS-LQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHH-HHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999877 9999999999998 9999999999999999999999999999999999874
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=6.9e-39 Score=245.43 Aligned_cols=140 Identities=37% Similarity=0.773 Sum_probs=133.3
Q ss_pred HHHHHHHHhc---CCCCcEEEeccC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccccCCC
Q 029962 6 KRREMDLMKL---MMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (184)
Q Consensus 6 ~Rl~kEl~~l---~~~~i~v~~~~~-n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~ 81 (184)
+||++|++.+ ++.|+.|.+.++ |++.|+++|.||++|||+||+|++.|.||++||++||+|+|.++++||||+. +
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~-~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDS-S 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECC-C
Confidence 5899998876 577999988876 9999999999999999999999999999999999999999999999999995 9
Q ss_pred CeEEccccC-CccccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHc
Q 029962 82 GSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEKYA 147 (184)
Q Consensus 82 G~icl~~l~-~~W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~~~k~a 147 (184)
|.||++++. +.|+|+++|.+||.+ |+++|.+|+.++|+|.+|+++|++|++.|.++||+++++++
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~-i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLLS-IQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999998 899999999999998 99999999999999999999999999999999999999975
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-36 Score=223.26 Aligned_cols=145 Identities=30% Similarity=0.638 Sum_probs=133.4
Q ss_pred hHHHHHHHHHhcCCCC---c-EEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccccC
Q 029962 4 PSKRREMDLMKLMMSD---Y-KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (184)
Q Consensus 4 a~~Rl~kEl~~l~~~~---i-~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (184)
|.+||.|||..|...+ + .+...+.|++.|++.|. |.+-||..|.|+++|.||.+|||+||+|.|.|+||||||++
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 5799999998884333 2 25667789999999998 89999999999999999999999999999999999999996
Q ss_pred CCCeEEccccC-CccccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcCCCC
Q 029962 80 LSGSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEKYAKPED 151 (184)
Q Consensus 80 ~~G~icl~~l~-~~W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~~~k~a~~~~ 151 (184)
.|.+|+.++. ++|.|+.++.+||+. +-.++.+|+++.|++.++|..|.+|+..|.++|.++|+||+.++.
T Consensus 82 -~gqvClPiis~EnWkP~T~teqVlqa-Li~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~rp 152 (153)
T KOG0422|consen 82 -KGQVCLPIISAENWKPATRTEQVLQA-LIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEKRP 152 (153)
T ss_pred -CCceeeeeeecccccCcccHHHHHHH-HHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCcCC
Confidence 7999999985 899999999999988 999999999999999999999999999999999999999998763
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-35 Score=224.88 Aligned_cols=144 Identities=33% Similarity=0.696 Sum_probs=129.3
Q ss_pred hHHHHHHHHHhc-CCCCcEEEe--ccCCcc--eEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccccc
Q 029962 4 PSKRREMDLMKL-MMSDYKVEM--INDGMQ--EFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (184)
Q Consensus 4 a~~Rl~kEl~~l-~~~~i~v~~--~~~n~~--~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 78 (184)
|.-||++++..+ .+++++... ..++++ .++++|. |..+.|.||.|+|.+.+|+.||+.||+|+|+|+||||||+
T Consensus 29 a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId 107 (184)
T KOG0420|consen 29 ALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNID 107 (184)
T ss_pred HHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcC
Confidence 678999998887 455655332 233444 5999997 9999999999999999999999999999999999999999
Q ss_pred CCCCeEEccccCCccccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcCCC
Q 029962 79 ELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEKYAKPE 150 (184)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~~~k~a~~~ 150 (184)
.+|.||++||+++|+|..+|.+|+.+ ++.||.+|++++|+|.+||.++++|++.|+..||...+.++..+
T Consensus 108 -~~GnVCLnILRedW~P~lnL~sIi~G-L~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v~~ 177 (184)
T KOG0420|consen 108 -LDGNVCLNILREDWRPVLNLNSIIYG-LQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCVGQ 177 (184)
T ss_pred -CcchHHHHHHHhcCccccchHHHHHH-HHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCccCc
Confidence 59999999999999999999999987 99999999999999999999999999999999999998887654
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-34 Score=217.96 Aligned_cols=152 Identities=26% Similarity=0.557 Sum_probs=143.7
Q ss_pred hHHHHHHHHHhc---CCCCcEEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccccCC
Q 029962 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (184)
Q Consensus 4 a~~Rl~kEl~~l---~~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
.++.+.+|++.+ |+.||.|.+.++|+....+.|.||.||||++|.|++.+.+..|||.+||+-.|+|+||||||- .
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa-a 89 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA-A 89 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc-c
Confidence 478899999988 888999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEEccccCCccccCcCchhhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 029962 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEFCEKYAKPEDIGGATE 157 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~l~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~n~~~f~~~~r~~~~k~a~~~~~~~~~~ 157 (184)
+|.||.+.|+.+|+|.++|+.||.. |..||..|++++.+|.+|..++.+|.++|.++||-.+..+|.+.....+.+
T Consensus 90 NGEICVNtLKkDW~p~LGirHvLlt-ikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p~~~~~~ae 165 (223)
T KOG0423|consen 90 NGEICVNTLKKDWNPSLGIRHVLLT-IKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKPKPKFKTAE 165 (223)
T ss_pred CceehhhhhhcccCcccchhhHhhh-hheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCccccc
Confidence 9999999999999999999999988 999999999999999999999999999999999999999999865544433
No 18
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.7e-28 Score=190.96 Aligned_cols=131 Identities=18% Similarity=0.444 Sum_probs=104.4
Q ss_pred CCC--hHHHHHHHHHhc---CCCCcEEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecc--cc
Q 029962 1 MSS--PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK--IY 73 (184)
Q Consensus 1 Mss--a~~Rl~kEl~~l---~~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~--i~ 73 (184)
|++ |.+||+||+++| |+++|.+.|.++||.+||.+|.||++|||+||.|+.+|.||++||++||.|+++|+ .|
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRF 80 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRF 80 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCce
Confidence 777 899999999988 78899999999999999999999999999999999999999999999999999985 34
Q ss_pred cccccCCCCeEEcccc---CCccccCcCchhhHHHHHHHhhcC-CCCCCCcc-HHHHHHHHhCHHHHH
Q 029962 74 HPNVDELSGSVCLDVI---NQTWSPMFDLVNVFEVFLPQLLLY-PNPSDPLN-GEAAALMMRDRTAYD 136 (184)
Q Consensus 74 HPnV~~~~G~icl~~l---~~~W~p~~~l~~il~~~i~~ll~~-p~~~~p~n-~~a~~~~~~n~~~f~ 136 (184)
.+ +-++||++. .+.|+|+|++.+||.+++..|+.+ |...+... ..-.++|.++.-+|+
T Consensus 81 kt-----ntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI~tS~~~kr~lA~~SlaFN 143 (244)
T KOG0894|consen 81 KT-----NTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSIETSDQDKRMLAKSSLAFN 143 (244)
T ss_pred ec-----CceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHhhhhhc
Confidence 43 348999876 489999999999999855555543 44433322 222334444444443
No 19
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-27 Score=176.69 Aligned_cols=114 Identities=25% Similarity=0.591 Sum_probs=102.8
Q ss_pred hHHHHHHHHHhc---CCCCcEEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccc-ccccccC
Q 029962 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI-YHPNVDE 79 (184)
Q Consensus 4 a~~Rl~kEl~~l---~~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnV~~ 79 (184)
|.+||+|||.++ +|+|+.+. ..+|+..|.+-+.|.+||.|+|.+|.+.++||+.||+..|.|.|+.++ .||+|+
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY- 93 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY- 93 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee-
Confidence 689999999987 78899988 667999999999999999999999999999999999999999999876 899999
Q ss_pred CCCeEEccccCCccccCcCchhhHHHHHHHhhcC-CCCCCCc
Q 029962 80 LSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLY-PNPSDPL 120 (184)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~l~~il~~~i~~ll~~-p~~~~p~ 120 (184)
++|.||+++|.+.|+|++++.+|.++ |.+||.. .....|.
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvClS-IlSMLSSs~eKqrP~ 134 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCLS-ILSMLSSSKEKQRPT 134 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHHH-HHHHHccCccccCCC
Confidence 69999999999999999999999999 7777754 3333443
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.6e-22 Score=160.05 Aligned_cols=129 Identities=22% Similarity=0.360 Sum_probs=117.6
Q ss_pred CCCCcEEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCC--CCCeeeEecccccccccCCCCeEEccccCCcc
Q 029962 16 MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPY--KSPSIGFVNKIYHPNVDELSGSVCLDVINQTW 93 (184)
Q Consensus 16 ~~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~--~pP~v~f~t~i~HPnV~~~~G~icl~~l~~~W 93 (184)
+.+||+|.|+-.|-+.|.++|++ ..|.|.||+|+|+|.+|.+||. .-|+|.|.+.+|||+|.+.++.+|++-....|
T Consensus 35 kL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~eW 113 (258)
T KOG0429|consen 35 KLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFPEW 113 (258)
T ss_pred cCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhhhh
Confidence 67899999999999999999994 7789999999999999999995 47999999999999999999999998776669
Q ss_pred ccCc-CchhhHHHHHHHhhcCCCCCCC--ccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 029962 94 SPMF-DLVNVFEVFLPQLLLYPNPSDP--LNGEAAALMMRDRTAYDQRVKEFCEKY 146 (184)
Q Consensus 94 ~p~~-~l~~il~~~i~~ll~~p~~~~p--~n~~a~~~~~~n~~~f~~~~r~~~~k~ 146 (184)
+... .|..||.. +|.+|.+|+...+ .|++|+.+|++++++|.++|+++++..
T Consensus 114 Rk~ehhiwqvL~y-lqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~s 168 (258)
T KOG0429|consen 114 RKEEHHIWQVLVY-LQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKAS 168 (258)
T ss_pred hccccHHHHHHHH-HHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 6665 89999987 9999999987655 599999999999999999999999854
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.2e-20 Score=152.82 Aligned_cols=109 Identities=23% Similarity=0.518 Sum_probs=91.8
Q ss_pred hHHHHHHHHHhcC--CCCcEEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccccCCC
Q 029962 4 PSKRREMDLMKLM--MSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (184)
Q Consensus 4 a~~Rl~kEl~~l~--~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~ 81 (184)
+.|||+||.+++. ...+.+.+.++|+++|+++|+||.+|-|+||+|+.+|.||.+||++||.+-.+|+--.-- .+
T Consensus 12 aVkRlmkEa~El~~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE---~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFE---VN 88 (314)
T ss_pred HHHHHHHHHHHhcCchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCcee---eC
Confidence 7899999999884 346788999999999999999999999999999999999999999999999988422222 34
Q ss_pred CeEEccccC---CccccCcCchhhHHHHHHHhhcCCC
Q 029962 82 GSVCLDVIN---QTWSPMFDLVNVFEVFLPQLLLYPN 115 (184)
Q Consensus 82 G~icl~~l~---~~W~p~~~l~~il~~~i~~ll~~p~ 115 (184)
.+|||+|.. +.|.|.|+|+..|+.+|-.|=..|+
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 589999874 8999999999999885555545554
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.9e-15 Score=141.09 Aligned_cols=106 Identities=24% Similarity=0.479 Sum_probs=93.5
Q ss_pred HHHHHHHHhc-------CCCCcEEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecc--ccccc
Q 029962 6 KRREMDLMKL-------MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK--IYHPN 76 (184)
Q Consensus 6 ~Rl~kEl~~l-------~~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPn 76 (184)
+|+.++..++ .+.||.|...++.+-..++.|.||.+|||.+|.|.|.|.||.+||..||.|...+. .++||
T Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npn 929 (1101)
T KOG0895|consen 850 AQWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPN 929 (1101)
T ss_pred HHHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcc
Confidence 3566654432 57899999999999999999999999999999999999999999999999999874 58999
Q ss_pred ccCCCCeEEccccC-------CccccCcCchhhHHHHHHHhhcC
Q 029962 77 VDELSGSVCLDVIN-------QTWSPMFDLVNVFEVFLPQLLLY 113 (184)
Q Consensus 77 V~~~~G~icl~~l~-------~~W~p~~~l~~il~~~i~~ll~~ 113 (184)
.|. .|++|+++|. +-|+|+-++.+||.+ ||.|+.+
T Consensus 930 ly~-~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s-~q~l~l~ 971 (1101)
T KOG0895|consen 930 LYE-DGKVCLSLLNTWHGRGNEVWNPSSSILQVLVS-IQGLVLN 971 (1101)
T ss_pred ccc-ccceehhhhccccCCCccccCcchhHHHHHHH-hhhhhcc
Confidence 994 9999999996 679999999999998 9998743
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1e-13 Score=130.82 Aligned_cols=108 Identities=26% Similarity=0.517 Sum_probs=98.8
Q ss_pred hHHHHHHHHHhc---CCCCcEEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecc---cccccc
Q 029962 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK---IYHPNV 77 (184)
Q Consensus 4 a~~Rl~kEl~~l---~~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~---i~HPnV 77 (184)
-.+|+++|++-+ .+.|+.+.+.+..+...++.|.||.+|||++|+|.|.|.||..||..||.|.+++. .+.||.
T Consensus 283 ~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNl 362 (1101)
T KOG0895|consen 283 WSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNL 362 (1101)
T ss_pred hHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCc
Confidence 468999999866 67899999999999999999999999999999999999999999999999999986 699999
Q ss_pred cCCCCeEEccccC-------CccccC-cCchhhHHHHHHHhhcC
Q 029962 78 DELSGSVCLDVIN-------QTWSPM-FDLVNVFEVFLPQLLLY 113 (184)
Q Consensus 78 ~~~~G~icl~~l~-------~~W~p~-~~l~~il~~~i~~ll~~ 113 (184)
|. +|+||+++|. +.|+|. .+|.++|.. ||.++.+
T Consensus 363 Yn-~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~s-IQ~Li~~ 404 (1101)
T KOG0895|consen 363 YN-DGKVCLSLLGTWTGSRREKWTPNGSSLLQVLES-IQGLILN 404 (1101)
T ss_pred cc-CceEEeeeeeecccccccCCCccccchhhhhhh-hhhhhcc
Confidence 95 9999999883 689999 799999999 9998754
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.1e-13 Score=99.99 Aligned_cols=107 Identities=19% Similarity=0.284 Sum_probs=85.6
Q ss_pred hHHHHHHHHHhc----CCCCcEEEeccC-C--cceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccc
Q 029962 4 PSKRREMDLMKL----MMSDYKVEMIND-G--MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (184)
Q Consensus 4 a~~Rl~kEl~~l----~~~~i~v~~~~~-n--~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (184)
..-||.+||.+= -+..++.-+.++ + +..|..+|.||+.|+||+.+|.++|.+.++||..||.|+|.+++.-+.
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred cchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 456888887643 333344444433 3 578999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEcccc--CCccccCcCchhhHHHHHHHhh
Q 029962 77 VDELSGSVCLDVI--NQTWSPMFDLVNVFEVFLPQLL 111 (184)
Q Consensus 77 V~~~~G~icl~~l--~~~W~p~~~l~~il~~~i~~ll 111 (184)
|+..+|.+.-..+ -.+|+..++++.+|.. ++.++
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~-lr~~m 121 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSYSIKMVLGQ-LRKEM 121 (138)
T ss_pred cccCCCccCccccchhhcccccchhhHHHHh-hhHHH
Confidence 9988888754322 3789999999999988 65433
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=6.2e-07 Score=65.31 Aligned_cols=93 Identities=16% Similarity=0.313 Sum_probs=64.4
Q ss_pred EEEEEEcCCCCCCCCCeeeEecccc-cccccCCCCeEEccccC-CccccCcCchhhHHHHHHHhhcCCC--CCCCccHHH
Q 029962 49 WKIRVELPDAYPYKSPSIGFVNKIY-HPNVDELSGSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPN--PSDPLNGEA 124 (184)
Q Consensus 49 f~~~i~fp~~YP~~pP~v~f~t~i~-HPnV~~~~G~icl~~l~-~~W~p~~~l~~il~~~i~~ll~~p~--~~~p~n~~a 124 (184)
..+.+.|+.+||+.||.+|...++. ..-|- .+|.||+.++. .+|+.+++++.++++ |..++..-. ...+++.+-
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl-~ggAIcmellt~qgwssay~Ve~vi~q-iaatlVkG~~ri~~~a~k~s 90 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVL-EGGAICMELLTKQGWSSAYEVERVIMQ-IAATLVKGGARIEFPAEKSS 90 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEe-cchhhHHHHHccccccchhhHHHHHHH-HHHHhhccceeEecCcchhh
Confidence 4577889999999999999765432 22333 47899999984 799999999999999 777776543 345554443
Q ss_pred HHHH--HhCHHHHHHHHHHHHH
Q 029962 125 AALM--MRDRTAYDQRVKEFCE 144 (184)
Q Consensus 125 ~~~~--~~n~~~f~~~~r~~~~ 144 (184)
. +| ..-.+.|...++-+.+
T Consensus 91 k-~~s~~qa~~sfksLv~~hek 111 (122)
T KOG0897|consen 91 K-LYSHSQAQQSFKSLVQIHEK 111 (122)
T ss_pred h-HhhHHHHHHHHHHHHHHHHh
Confidence 3 44 2334556666655543
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.26 E-value=3.7e-06 Score=63.49 Aligned_cols=66 Identities=27% Similarity=0.636 Sum_probs=58.2
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeeEeccc---ccccccCCCCeEEc---cccCCccccCcCchhhHHHHHHHhhc
Q 029962 45 QGGVWKIRVELPDAYPYKSPSIGFVNKI---YHPNVDELSGSVCL---DVINQTWSPMFDLVNVFEVFLPQLLL 112 (184)
Q Consensus 45 egg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnV~~~~G~icl---~~l~~~W~p~~~l~~il~~~i~~ll~ 112 (184)
.|+.+.+.|.||+.||..||.|....+. +-|||+. +|.+|+ ....+.|.|...+..+|.+ ...+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~~~~~~D~~~P~~~~~~~l~~-a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLDEELVLDPWDPEGIIADCLER-AIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEEEecCCcccCccCHHHHHHHHHHH-HHHHHH
Confidence 6899999999999999999999988644 6899995 999999 6777899999999999988 777775
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.69 E-value=8.7e-05 Score=55.27 Aligned_cols=77 Identities=26% Similarity=0.514 Sum_probs=50.1
Q ss_pred cceEEEEEeCCCCCCCCCCEE--EEEEEcCCCCCCCCCeeeEeccc-----ccccccCCCCeEEccccCCcccc-CcCch
Q 029962 29 MQEFYVEFNGPKESSYQGGVW--KIRVELPDAYPYKSPSIGFVNKI-----YHPNVDELSGSVCLDVINQTWSP-MFDLV 100 (184)
Q Consensus 29 ~~~w~~~i~Gp~~tpYegg~f--~~~i~fp~~YP~~pP~v~f~t~i-----~HPnV~~~~G~icl~~l~~~W~p-~~~l~ 100 (184)
+....++|. -.|.|..| .+.|.+|.+||..||.|...... -+.+|+ .+|+|.+..|. .|.+ ..+|.
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL~-~W~~~~s~L~ 105 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYLQ-NWNPPSSNLV 105 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHHH-T--TTTS-HH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchhc-cCCCCCCCHH
Confidence 444555553 35778777 56777899999999999876532 244999 59999888874 6776 67888
Q ss_pred hhHHHHHHHhhc
Q 029962 101 NVFEVFLPQLLL 112 (184)
Q Consensus 101 ~il~~~i~~ll~ 112 (184)
.++.. ++..|.
T Consensus 106 ~lv~~-l~~~F~ 116 (121)
T PF05743_consen 106 DLVQE-LQAVFS 116 (121)
T ss_dssp HHHHH-HHHCCC
T ss_pred HHHHH-HHHHHh
Confidence 88766 666654
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.59 E-value=0.00057 Score=51.91 Aligned_cols=93 Identities=16% Similarity=0.306 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcC----------CCCcEEEeccCCcceEEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCeeeEeccc
Q 029962 5 SKRREMDLMKLM----------MSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWK--IRVELPDAYPYKSPSIGFVNKI 72 (184)
Q Consensus 5 ~~Rl~kEl~~l~----------~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~--~~i~fp~~YP~~pP~v~f~t~i 72 (184)
.+||..|++.|. ...+.++ ++.+=..|.+.-.= .|+--.|. +++.+|..||..||.|..-.--
T Consensus 26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLd 100 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPELD 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GGGT
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceeccccC
Confidence 589999998761 1234444 23344555443321 12334444 4555699999999999764311
Q ss_pred -ccccccCCCCeEEccccC-Ccc---ccCcCchhhH
Q 029962 73 -YHPNVDELSGSVCLDVIN-QTW---SPMFDLVNVF 103 (184)
Q Consensus 73 -~HPnV~~~~G~icl~~l~-~~W---~p~~~l~~il 103 (184)
--.-.| ..|+||+.... .-| .|.++|...|
T Consensus 101 GKTaKMY-RGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 101 GKTAKMY-RGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TT-SSBC-CCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred Cchhhhh-cCceEeeecccchhhhhcCCchhHHHHH
Confidence 122334 38999998763 456 4566776665
No 29
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.58 E-value=0.024 Score=42.27 Aligned_cols=92 Identities=21% Similarity=0.358 Sum_probs=63.6
Q ss_pred hcCCCCcEEEeccCCcceEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccccCCC-CeE--Eccc
Q 029962 14 KLMMSDYKVEMINDGMQEFYVEFNG--PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS-GSV--CLDV 88 (184)
Q Consensus 14 ~l~~~~i~v~~~~~n~~~w~~~i~G--p~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~-G~i--cl~~ 88 (184)
-|...|+.++...+.-..|.+ |.| .+.+.|.+..-.+.|.+|+.||..+|.+.+..+-. ...+ |.| |-..
T Consensus 8 ~L~~~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L----~~~~G~~iP~~~~~ 82 (122)
T PF14462_consen 8 YLDGRGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPL----KLADGGPIPNAAEV 82 (122)
T ss_pred HHHhcCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCce----EccCCCcCCchhcc
Confidence 344568888888777788877 666 47788999999999999999999999887665322 2222 233 3221
Q ss_pred c--------------CCccccCc-CchhhHHHHHHHhh
Q 029962 89 I--------------NQTWSPMF-DLVNVFEVFLPQLL 111 (184)
Q Consensus 89 l--------------~~~W~p~~-~l~~il~~~i~~ll 111 (184)
. ...|+|.. +|.+.|.. |...|
T Consensus 83 ~~~~~G~~wQrWSRH~~~W~P~~D~l~T~l~~-v~~~L 119 (122)
T PF14462_consen 83 TQTFDGRTWQRWSRHNNPWRPGVDDLWTHLAR-VEHAL 119 (122)
T ss_pred hhhcCCeeeeeecCCCCCCCCCCCcHHHHHHH-HHHHH
Confidence 1 24688876 78887766 65554
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.025 Score=48.79 Aligned_cols=79 Identities=27% Similarity=0.399 Sum_probs=55.2
Q ss_pred CcceEEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCeeeEecc-----cccccccCCCCeEEccccCCccccCc-Cc
Q 029962 28 GMQEFYVEFNGPKESSYQGGVWK--IRVELPDAYPYKSPSIGFVNK-----IYHPNVDELSGSVCLDVINQTWSPMF-DL 99 (184)
Q Consensus 28 n~~~w~~~i~Gp~~tpYegg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~HPnV~~~~G~icl~~l~~~W~p~~-~l 99 (184)
+++...++|. .+|.|.+|. +.|.+.+.||..||.+...+. -.|-+|+ .+|+|.|..|. .|.+.- .|
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd-~nG~V~LPYLh-~W~~pssdL 124 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVD-PNGKVYLPYLH-NWDPPSSDL 124 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccC-CCCeEechhhc-cCCCccchH
Confidence 3455555553 467777775 677789999999999966531 1489999 59999999985 576554 66
Q ss_pred hhhHHHHHHHhhcC
Q 029962 100 VNVFEVFLPQLLLY 113 (184)
Q Consensus 100 ~~il~~~i~~ll~~ 113 (184)
..++.. |-..|.+
T Consensus 125 v~Liq~-l~a~f~~ 137 (365)
T KOG2391|consen 125 VGLIQE-LIAAFSE 137 (365)
T ss_pred HHHHHH-HHHHhcC
Confidence 666654 5555544
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.48 E-value=0.035 Score=39.46 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=37.2
Q ss_pred HHHHHHHHhc---CCCCcEEEeccCCcceEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecc
Q 029962 6 KRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNG--PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (184)
Q Consensus 6 ~Rl~kEl~~l---~~~~i~v~~~~~n~~~w~~~i~G--p~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (184)
.+++.|+..| -.... +.....+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|.....
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 4555666555 22222 22233344556666632 234444567899999999999999999987654
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.85 E-value=0.44 Score=33.45 Aligned_cols=26 Identities=35% Similarity=0.662 Sum_probs=22.4
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeeEec
Q 029962 45 QGGVWKIRVELPDAYPYKSPSIGFVN 70 (184)
Q Consensus 45 egg~f~~~i~fp~~YP~~pP~v~f~t 70 (184)
....+.+.+.||++||..+|.|.+.+
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEEC
Confidence 34568999999999999999998865
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=91.17 E-value=0.32 Score=37.97 Aligned_cols=60 Identities=20% Similarity=0.390 Sum_probs=44.2
Q ss_pred EEEEEcCCCCCCCCCeeeEeccc---ccccccCCC-----CeEEccccC-CccccCcCchhhHHHHHHHhh
Q 029962 50 KIRVELPDAYPYKSPSIGFVNKI---YHPNVDELS-----GSVCLDVIN-QTWSPMFDLVNVFEVFLPQLL 111 (184)
Q Consensus 50 ~~~i~fp~~YP~~pP~v~f~t~i---~HPnV~~~~-----G~icl~~l~-~~W~p~~~l~~il~~~i~~ll 111 (184)
.+.|.|+.+||..+|.|.+.... .+||++. . ..+|+---. ..|.+..|+..+|.. |..-|
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~-~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~r-l~~Wl 124 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP-GPEGEPVSLCLYEGPWSEWRPSWGPEGFLDR-LFDWL 124 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCC-CCCCCCccceEecCCHHHhhhccCHHHHHHH-HHHHH
Confidence 46789999999999987777543 3577763 4 578985432 578888999888877 66555
No 34
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.13 E-value=0.36 Score=36.36 Aligned_cols=95 Identities=14% Similarity=0.323 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeccCCcceEEEEEeCCCCCCCCCCE--------EEE--EEEcCCCCCCCCCeeeEeccc-c
Q 029962 5 SKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGV--------WKI--RVELPDAYPYKSPSIGFVNKI-Y 73 (184)
Q Consensus 5 ~~Rl~kEl~~l~~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~--------f~~--~i~fp~~YP~~pP~v~f~t~i-~ 73 (184)
.+||..|++.|.. +|+...++-..|.-.=..+.||-|-|.. |.| ++.+|-.||..+|.+....-- -
T Consensus 29 vqrlkeey~sli~---yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgk 105 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA---YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGK 105 (167)
T ss_pred HHHHHHHHHHHHH---HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCch
Confidence 5899999887621 1222223333443333456777776632 344 455689999999998653200 0
Q ss_pred cccccCCCCeEEcccc-CCccccCc---CchhhH
Q 029962 74 HPNVDELSGSVCLDVI-NQTWSPMF---DLVNVF 103 (184)
Q Consensus 74 HPnV~~~~G~icl~~l-~~~W~p~~---~l~~il 103 (184)
.-..+ ..|+||+.-. +.-|.... +|...+
T Consensus 106 takmy-rggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 106 TAKMY-RGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred hhhhh-cCceEeeccccchhhhhcCcchhHHHHH
Confidence 11234 3899999543 56675444 454443
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.43 E-value=1.1 Score=42.77 Aligned_cols=65 Identities=20% Similarity=0.354 Sum_probs=46.7
Q ss_pred HHHHHHHHHhc--CCCCcEEEeccCCcceEEEEEeCCCCCCCCCC-EEEEEEEcCCCCCCC-CCeeeEec
Q 029962 5 SKRREMDLMKL--MMSDYKVEMINDGMQEFYVEFNGPKESSYQGG-VWKIRVELPDAYPYK-SPSIGFVN 70 (184)
Q Consensus 5 ~~Rl~kEl~~l--~~~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg-~f~~~i~fp~~YP~~-pP~v~f~t 70 (184)
.|-|.+|+.-| ..+.+.++-.+-.-..-.+.+.||-.-. .|- ..++.|.||.+||.+ +|+++|..
T Consensus 422 pQnLgeE~S~Ig~k~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~ 490 (1081)
T KOG0309|consen 422 PQNLGEEFSLIGVKIRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFEN 490 (1081)
T ss_pred hhhHHhHHhHhhccccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEec
Confidence 46778888766 4456666655555677788888764333 333 448999999999997 79999975
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=78.81 E-value=5.9 Score=32.32 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=25.0
Q ss_pred EEEEEeCCCCCC---CCCCEEEEEEEcCCCCCCCCCeeeE
Q 029962 32 FYVEFNGPKESS---YQGGVWKIRVELPDAYPYKSPSIGF 68 (184)
Q Consensus 32 w~~~i~Gp~~tp---Yegg~f~~~i~fp~~YP~~pP~v~f 68 (184)
+.+.|. ...+- |.| .+.+.+.++++||..+|.|.+
T Consensus 33 f~v~iq-~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 33 FEVTIQ-YEEGENDEPKG-SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred ceeeee-cccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence 666665 22222 223 789999999999999999943
No 37
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=77.35 E-value=6.4 Score=33.62 Aligned_cols=78 Identities=17% Similarity=0.316 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCC-CCcEEEeccCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccccCCCCeE
Q 029962 6 KRREMDLMKLMM-SDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84 (184)
Q Consensus 6 ~Rl~kEl~~l~~-~~i~v~~~~~n~~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G~i 84 (184)
.+|.+|+.++.- ..+.+. .+.++...++.+.. + .....++|.++.+||..+|.+..--+ ...
T Consensus 102 s~ll~EIe~IGW~kl~~i~-~d~~ls~i~l~~~D---~---~R~H~l~l~l~~~yp~~~p~~~~~~P-~~~--------- 164 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKLVQIQ-FDDDLSTIKLKIFD---S---SRQHYLELKLPSNYPFEPPSCSLDLP-IPF--------- 164 (291)
T ss_dssp -CHHHHHHHHHCGCCEEEE-E-CCCSEEEEEEET---T---CEEEEEEEETTTTTTTSEEEECS-TT-S-H---------
T ss_pred HHHHHHHHHhccccceEEe-cCCCccEEEEEEEc---C---CceEEEEEEECCCCCCCCceeeCCCC-cch---------
Confidence 567777777633 233332 35678888888872 1 26788999999999999997543211 111
Q ss_pred EccccCCcccc-CcCchhhHHH
Q 029962 85 CLDVINQTWSP-MFDLVNVFEV 105 (184)
Q Consensus 85 cl~~l~~~W~p-~~~l~~il~~ 105 (184)
...|.+ ..+|.+++.+
T Consensus 165 -----~~~w~~~~ssL~~v~~q 181 (291)
T PF09765_consen 165 -----SLSWSPSQSSLKDVVQQ 181 (291)
T ss_dssp -----HHHHHCHT-SHHHHHHH
T ss_pred -----hhhhcccccCHHHHHHH
Confidence 125777 5678877766
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=56.39 E-value=16 Score=31.91 Aligned_cols=28 Identities=25% Similarity=0.621 Sum_probs=23.6
Q ss_pred CCEEEEEEEcCCCCCCCCCeeeEeccccc
Q 029962 46 GGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (184)
Q Consensus 46 gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (184)
+-.|-+.|.+|..||...|.++|++ +||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 3368888999999999999999987 555
No 39
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=54.98 E-value=52 Score=23.30 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=13.8
Q ss_pred CCccHHHHHHHHhCHHHHHHHHHHHHHHHcC
Q 029962 118 DPLNGEAAALMMRDRTAYDQRVKEFCEKYAK 148 (184)
Q Consensus 118 ~p~n~~a~~~~~~n~~~f~~~~r~~~~k~a~ 148 (184)
.|++.++-- +.--+++.+..+.-++|...
T Consensus 22 ~pc~dE~EL--~~~Eq~~q~Wl~sI~ekd~n 50 (92)
T PF15243_consen 22 RPCVDETEL--QQQEQQHQAWLQSIAEKDNN 50 (92)
T ss_pred CccchHHHH--HHHHHHHHHHHHHHHHhccC
Confidence 456655532 23334444455555555544
No 40
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=45.95 E-value=64 Score=22.20 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccc
Q 029962 30 QEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (184)
Q Consensus 30 ~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (184)
..|.+.+.|+.+.....-+=++...+.+.|+. |...+..+-|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 57999999988765556677889999999887 66666555443
No 41
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=39.05 E-value=10 Score=36.87 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=0.0
Q ss_pred CCEEEEEEEcCCCCCCCCCeeeEecc
Q 029962 46 GGVWKIRVELPDAYPYKSPSIGFVNK 71 (184)
Q Consensus 46 gg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (184)
=.+=.+.|.+|.+||..+|.+.+.+.
T Consensus 713 P~VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 713 PSVPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp --------------------------
T ss_pred CCCCCeeEeCCCCCCccCCcCcccHH
Confidence 35667889999999999999887654
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=38.44 E-value=46 Score=25.15 Aligned_cols=24 Identities=33% Similarity=0.697 Sum_probs=22.1
Q ss_pred CCEEEEEEEcCCCCC-CCCCeeeEe
Q 029962 46 GGVWKIRVELPDAYP-YKSPSIGFV 69 (184)
Q Consensus 46 gg~f~~~i~fp~~YP-~~pP~v~f~ 69 (184)
.|.|.|.-.+|--|| ..||.|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 589999999999999 999999886
No 43
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=35.61 E-value=52 Score=26.19 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=22.0
Q ss_pred CCEEEEEEEcCCCCCCCCCeeeEe
Q 029962 46 GGVWKIRVELPDAYPYKSPSIGFV 69 (184)
Q Consensus 46 gg~f~~~i~fp~~YP~~pP~v~f~ 69 (184)
.|.|.|+-.+|--||..+|.|-|.
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEE
Confidence 589999999999999999999886
No 44
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=32.05 E-value=66 Score=28.10 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=33.9
Q ss_pred ceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEe-cccccccc
Q 029962 30 QEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFV-NKIYHPNV 77 (184)
Q Consensus 30 ~~w~~~i~Gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~-t~i~HPnV 77 (184)
-++++.| ||.|-..+-+|.|...||..||-+.|. ..-|+|-.
T Consensus 54 DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~ 96 (333)
T PF06113_consen 54 DRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDP 96 (333)
T ss_pred ceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCCh
Confidence 3555555 699999999999999999999999996 33477743
No 45
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.17 E-value=1.3e+02 Score=30.13 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=9.8
Q ss_pred cccCcCchhhHHHHHHHhhcCC
Q 029962 93 WSPMFDLVNVFEVFLPQLLLYP 114 (184)
Q Consensus 93 W~p~~~l~~il~~~i~~ll~~p 114 (184)
|...+..+-.++. |..++.-+
T Consensus 830 ~~~~HDkKlcvL~-l~tli~l~ 850 (1010)
T KOG1991|consen 830 FKKVHDKKLCVLG-LLTLISLG 850 (1010)
T ss_pred HHhhhhHHHHHHH-HHHHHhcc
Confidence 4443444433444 66665543
No 46
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=29.45 E-value=28 Score=25.11 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCCcccccccccCCCch
Q 029962 150 EDIGGATEEKSSDDEELSEDEYASSDE 176 (184)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (184)
.++.+...+++.|+++.|+.++.|+||
T Consensus 82 n~a~~~~vd~~nd~e~~s~eee~ded~ 108 (109)
T KOG3214|consen 82 NNAEDDVVDEENDEEEESEEEEDDEDD 108 (109)
T ss_pred hccccchhhhhccccccCchhhccccc
Confidence 344444444455556666666666554
No 47
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=28.71 E-value=61 Score=30.57 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHcCCCCCC
Q 029962 134 AYDQRVKEFCEKYAKPEDIG 153 (184)
Q Consensus 134 ~f~~~~r~~~~k~a~~~~~~ 153 (184)
.|++-.+....+|..-+..-
T Consensus 119 K~~k~~e~~i~~yrenPe~~ 138 (595)
T PF05470_consen 119 KYNKEYEAQIAKYRENPEAF 138 (595)
T ss_pred hhhhhHHHHHHHHHhCCccc
Confidence 33333344444555544333
No 48
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=27.96 E-value=86 Score=24.19 Aligned_cols=24 Identities=33% Similarity=0.762 Sum_probs=21.8
Q ss_pred CCEEEEEEEcCCCCC-----CCCCeeeEe
Q 029962 46 GGVWKIRVELPDAYP-----YKSPSIGFV 69 (184)
Q Consensus 46 gg~f~~~i~fp~~YP-----~~pP~v~f~ 69 (184)
.|.|.|.-.+|--|| ..||.|-|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 489999999999999 899999886
No 49
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=27.67 E-value=1.4e+02 Score=20.42 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=31.2
Q ss_pred CCCccHHHHHHHHhCHHHHHHHHHHHHHHHcCCCCCCC
Q 029962 117 SDPLNGEAAALMMRDRTAYDQRVKEFCEKYAKPEDIGG 154 (184)
Q Consensus 117 ~~p~n~~a~~~~~~n~~~f~~~~r~~~~k~a~~~~~~~ 154 (184)
+.|-+.+|...|..-..+..+..+++.++|+.-..-..
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~yGPLt~~~~ 61 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRYGPLTNFGV 61 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCc
Confidence 45788999999999999999999999999987554433
No 50
>smart00340 HALZ homeobox associated leucin zipper.
Probab=26.55 E-value=46 Score=20.16 Aligned_cols=11 Identities=18% Similarity=0.458 Sum_probs=9.3
Q ss_pred HHHHHHHHHhc
Q 029962 5 SKRREMDLMKL 15 (184)
Q Consensus 5 ~~Rl~kEl~~l 15 (184)
.+||++|+++|
T Consensus 21 NrRL~ke~~eL 31 (44)
T smart00340 21 NRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHH
Confidence 58999998876
No 51
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=26.38 E-value=1.1e+02 Score=23.91 Aligned_cols=41 Identities=27% Similarity=0.416 Sum_probs=22.6
Q ss_pred ccccc---ccccCCCCeEEccccCCccccCcCchhhHHHHHHHhhcCC
Q 029962 70 NKIYH---PNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYP 114 (184)
Q Consensus 70 t~i~H---PnV~~~~G~icl~~l~~~W~p~~~l~~il~~~i~~ll~~p 114 (184)
|++|| +||+ .+|.||+.... .|.......+..+-..+|..+
T Consensus 90 T~Ly~aPf~NV~-~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ 133 (175)
T PF14460_consen 90 TPLYHAPFFNVY-SNGSVCWGNNS---LPKISTLASIEAWEDAFFNSP 133 (175)
T ss_pred CeeEeCCccccC-CCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCC
Confidence 45565 4898 58999997643 233333334444334444444
No 52
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.94 E-value=48 Score=33.08 Aligned_cols=6 Identities=17% Similarity=0.158 Sum_probs=2.6
Q ss_pred eEEEEE
Q 029962 31 EFYVEF 36 (184)
Q Consensus 31 ~w~~~i 36 (184)
.|.+.+
T Consensus 1251 LWDvR~ 1256 (1516)
T KOG1832|consen 1251 LWDVRI 1256 (1516)
T ss_pred eeeecc
Confidence 344443
No 53
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=23.82 E-value=75 Score=22.90 Aligned_cols=20 Identities=15% Similarity=0.479 Sum_probs=16.2
Q ss_pred ceEEEEEeCCCCCCCCCCEEEE
Q 029962 30 QEFYVEFNGPKESSYQGGVWKI 51 (184)
Q Consensus 30 ~~w~~~i~Gp~~tpYegg~f~~ 51 (184)
..|.|.|.| +..|+|-.|.|
T Consensus 1 ~kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 1 KKWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred CceEEEecC--CeeeecceEEE
Confidence 369999986 66899988866
No 54
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=23.69 E-value=64 Score=26.32 Aligned_cols=54 Identities=24% Similarity=0.400 Sum_probs=37.8
Q ss_pred CCCCeeeEeccccccccc-CCCCeEEccccCCcc--ccCcCchhhHHHHHHHhhcCCC
Q 029962 61 YKSPSIGFVNKIYHPNVD-ELSGSVCLDVINQTW--SPMFDLVNVFEVFLPQLLLYPN 115 (184)
Q Consensus 61 ~~pP~v~f~t~i~HPnV~-~~~G~icl~~l~~~W--~p~~~l~~il~~~i~~ll~~p~ 115 (184)
+.||.|.|-.+.|...|+ .+.|.|--.+...+| .|+-.+.+-|.. |..++-.|+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkr-if~~lg~p~ 223 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKR-IFRLLGTPT 223 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHH-HHHHhCCCc
Confidence 468999999999998887 334555445555566 566677777777 666766554
No 55
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=23.38 E-value=1.3e+02 Score=24.83 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=20.6
Q ss_pred ccccc---cccCCCCeEEccccCCccccCc-CchhhHHHHHHHhh
Q 029962 71 KIYHP---NVDELSGSVCLDVINQTWSPMF-DLVNVFEVFLPQLL 111 (184)
Q Consensus 71 ~i~HP---nV~~~~G~icl~~l~~~W~p~~-~l~~il~~~i~~ll 111 (184)
++||. ||+ .+|.||+.... .|.. ++.+ +.. ....|
T Consensus 132 ~L~~aPffNV~-~~G~VC~G~~~---~P~~~~~~~-i~~-we~~F 170 (228)
T TIGR03737 132 KLYQAPLFNVW-SNGEICAGNAR---LPDRPTVAN-ISA-WEDAF 170 (228)
T ss_pred eeccCCcCccC-CCCeEeeCCCc---CCCCcCHHH-HHH-HHHHH
Confidence 45554 888 48999997653 3433 4444 444 43444
No 56
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=23.07 E-value=79 Score=20.33 Aligned_cols=15 Identities=20% Similarity=0.618 Sum_probs=9.6
Q ss_pred CccccCcCchhhHHH
Q 029962 91 QTWSPMFDLVNVFEV 105 (184)
Q Consensus 91 ~~W~p~~~l~~il~~ 105 (184)
=+|.|.++|.++|..
T Consensus 36 LgW~p~~~L~~~i~~ 50 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRD 50 (62)
T ss_dssp C----SSSHHHHHHH
T ss_pred hCCCcCCCHHHHHHH
Confidence 379999999999977
No 57
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=21.05 E-value=1.5e+02 Score=25.81 Aligned_cols=40 Identities=23% Similarity=0.486 Sum_probs=28.9
Q ss_pred ceEEEEEeCCCCC-CCCCCEEEEEEE---cCCCCCCCCCeeeEec
Q 029962 30 QEFYVEFNGPKES-SYQGGVWKIRVE---LPDAYPYKSPSIGFVN 70 (184)
Q Consensus 30 ~~w~~~i~Gp~~t-pYegg~f~~~i~---fp~~YP~~pP~v~f~t 70 (184)
.+|+..|.|-+++ -|++|.+++++. |-.-|- +.|+|||-.
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~q-R~PriRfG~ 240 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQ-RGPRIRFGM 240 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEeccccccccc-cCCceEeeE
Confidence 3689999997665 888999998876 333333 456999964
Done!