Query 029963
Match_columns 184
No_of_seqs 135 out of 1087
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 09:55:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029963.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029963hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 47.0 2.6 0.00019 24.4 0.6 26 33-58 22-48 (70)
2 d1xrda1 f.3.1.1 (A:1-52) Light 14.0 53 0.0038 18.1 2.1 24 47-70 7-30 (52)
3 d2g7la2 a.121.1.1 (A:87-230) P 11.9 97 0.0071 19.5 3.5 47 5-52 7-58 (144)
4 d1khda1 a.46.2.1 (A:12-80) Ant 9.5 1.6E+02 0.011 16.2 5.4 53 71-125 2-57 (69)
5 d2g7ga2 a.121.1.1 (A:74-205) P 9.5 1.1E+02 0.0082 18.8 3.0 47 5-52 7-58 (132)
6 d2v9va1 a.4.5.35 (A:377-437) C 9.1 80 0.0059 17.1 1.7 21 36-56 5-26 (61)
7 d1k3xa1 a.156.1.2 (A:125-213) 8.3 33 0.0024 20.8 -0.2 19 86-104 27-45 (89)
8 d3ct6a1 c.54.1.2 (A:1-123) PTS 8.2 1.9E+02 0.014 18.2 3.8 32 97-129 88-119 (123)
9 d1z0xa2 a.121.1.1 (A:72-220) T 7.5 1.4E+02 0.01 18.9 3.0 46 5-51 7-57 (149)
10 d1l7va_ f.22.1.1 (A:) ABC tran 7.3 1.4E+02 0.011 22.1 3.2 25 20-44 275-299 (324)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=47.02 E-value=2.6 Score=24.44 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=19.3
Q ss_pred HHHHHHHHhhh-cCCcchHHHHHHHHH
Q 029963 33 GCSDAIAQKIS-GVKKLQLKRLLLLML 58 (184)
Q Consensus 33 ~~gD~~aQ~~~-~~~~~D~~R~~r~~~ 58 (184)
.+-|++||.-. ....++..|++++..
T Consensus 22 ~ledilaqfeis~~~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVPSAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccchHhHHHHHHHHHH
Confidence 46799999843 235689999999853
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=14.01 E-value=53 Score=18.07 Aligned_cols=24 Identities=13% Similarity=-0.034 Sum_probs=15.2
Q ss_pred cchHHHHHHHHHHhhhccchhHhH
Q 029963 47 KLQLKRLLLLMLFDFGYGVPFGHF 70 (184)
Q Consensus 47 ~~D~~R~~r~~~~G~~~~gp~~~~ 70 (184)
-+|++|++.......+..+-..|+
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHf 30 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHF 30 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHH
Confidence 478998876655555455555555
No 3
>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.88 E-value=97 Score=19.52 Aligned_cols=47 Identities=9% Similarity=0.142 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhCcHHHHHHHHH-----HHHHHHHHHHHhhhcCCcchHHH
Q 029963 5 VKEAWRKYLIQLQVHPLRTKAITAG-----VLAGCSDAIAQKISGVKKLQLKR 52 (184)
Q Consensus 5 ~~~~~~~Y~~~l~~~Pl~t~~~t~~-----~l~~~gD~~aQ~~~~~~~~D~~R 52 (184)
++++...|.+.+.+||.+...+.+. -.....|-+.+.+.+ ..++...
T Consensus 7 Lr~~a~~~r~~l~~HP~~~~l~~~~~~~~p~~l~~~e~~l~~L~~-aG~~~~~ 58 (144)
T d2g7la2 7 LRAVLTSYTLVLFAHPQLARSALVARPSGENYLRLVERVLELLAR-SGAPGAQ 58 (144)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHSCCCSHHHHHHHHHHHHHHHT-TCCCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHhcCCCCcccHHHHHHHHHHHHHH-cCCCHHH
Confidence 5678889999999999988876543 234455666666655 4454443
No 4
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=9.50 E-value=1.6e+02 Score=16.22 Aligned_cols=53 Identities=9% Similarity=0.131 Sum_probs=35.6
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHhcCCChhhHHHH
Q 029963 71 LNKFLDAIFKGRDNKSVAKKVLLEQLI---FSPWINFLFMTYFGLVVEGKPWGSVMKK 125 (184)
Q Consensus 71 wy~~L~~~~p~~~~~~~~~Kv~~Dq~v---~~P~~~~~f~~~~~~~l~g~~~~~~~~~ 125 (184)
|-..++++..+.++..-=.+-++|+.+ .++.-+..|+.... ..|.+.+++..-
T Consensus 2 ~~~il~kl~~g~~Ls~ee~~~~~~~i~~g~~~d~qiaafL~al~--~kg~t~dEi~g~ 57 (69)
T d1khda1 2 HQPILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISMK--MRGERPEEIAGA 57 (69)
T ss_dssp CHHHHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHH--HHCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HhCCCHHHHHHH
Confidence 345678888876665544555556554 57778888887654 788887776643
No 5
>d2g7ga2 a.121.1.1 (A:74-205) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=9.46 E-value=1.1e+02 Score=18.79 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhCcHHHHHHHHH-----HHHHHHHHHHHhhhcCCcchHHH
Q 029963 5 VKEAWRKYLIQLQVHPLRTKAITAG-----VLAGCSDAIAQKISGVKKLQLKR 52 (184)
Q Consensus 5 ~~~~~~~Y~~~l~~~Pl~t~~~t~~-----~l~~~gD~~aQ~~~~~~~~D~~R 52 (184)
++.+...|.+.+.+||.+...+.+. .....-|-+.+.+.. ..++...
T Consensus 7 lr~~a~~~r~~~~~HP~~~~l~~~~~~~~p~~l~~~e~~l~~L~~-aG~~~~~ 58 (132)
T d2g7ga2 7 FSEWARSYRAAFSRHPTAIRLLATETVRDPGSLSVYHSAAAGLRG-AGFPDDH 58 (132)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTSCCCCHHHHHHHHHHHHHHHH-HTCCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHhhcCCCCChhHHHHHHHHHHHHHH-CCCCHHH
Confidence 5678889999999999988876653 234455555555554 3455443
No 6
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=9.14 E-value=80 Score=17.09 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=14.8
Q ss_pred HHHHHhhh-cCCcchHHHHHHH
Q 029963 36 DAIAQKIS-GVKKLQLKRLLLL 56 (184)
Q Consensus 36 D~~aQ~~~-~~~~~D~~R~~r~ 56 (184)
.++||.+. +++..||.....-
T Consensus 5 kilaqiiqehregldwqeaatr 26 (61)
T d2v9va1 5 KILAQIIQEHREGLDWQEAATR 26 (61)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHH
Confidence 47889986 4677888866543
No 7
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=8.29 E-value=33 Score=20.76 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhhhhHHHH
Q 029963 86 SVAKKVLLEQLIFSPWINF 104 (184)
Q Consensus 86 ~~~~Kv~~Dq~v~~P~~~~ 104 (184)
..++.+++||-+++-+.+.
T Consensus 27 ~~Ik~~LlDQ~~~aGIGN~ 45 (89)
T d1k3xa1 27 RQFAGLLLDQAFLAGLGNY 45 (89)
T ss_dssp SCHHHHTTCTTTSBTCCHH
T ss_pred chHHHHHhcCccccccCcH
Confidence 3588899999999998654
No 8
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM {Lactococcus lactis [TaxId: 1358]}
Probab=8.16 E-value=1.9e+02 Score=18.18 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=26.1
Q ss_pred hhhhHHHHHHHHHHHHHhcCCChhhHHHHHhhh
Q 029963 97 IFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKD 129 (184)
Q Consensus 97 v~~P~~~~~f~~~~~~~l~g~~~~~~~~~~~~~ 129 (184)
+-+|+.-..+-+... ...|.+++++.+++++-
T Consensus 88 i~~p~tegal~Aa~~-a~~g~~leeI~~~~~~~ 119 (123)
T d3ct6a1 88 FNVPLIEGAYTASAL-LEAGATFEAIKEQLEKM 119 (123)
T ss_dssp CCSCHHHHHHHHHHH-HHTTCCHHHHHHHHGGG
T ss_pred EcCchHHHHHHHHHH-HhCCCCHHHHHHHHHHh
Confidence 457777778887777 88999999999998764
No 9
>d1z0xa2 a.121.1.1 (A:72-220) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=7.54 E-value=1.4e+02 Score=18.95 Aligned_cols=46 Identities=9% Similarity=-0.009 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhCcHHHHHHHHHHH-----HHHHHHHHHhhhcCCcchHH
Q 029963 5 VKEAWRKYLIQLQVHPLRTKAITAGVL-----AGCSDAIAQKISGVKKLQLK 51 (184)
Q Consensus 5 ~~~~~~~Y~~~l~~~Pl~t~~~t~~~l-----~~~gD~~aQ~~~~~~~~D~~ 51 (184)
++.+...|.+.+.+||.+.....+... ...-|-+-+.+.. ..++..
T Consensus 7 L~~~a~~~~~~~~~hP~~~~l~~~~~~~~p~~l~~~e~~l~~L~~-aGl~~~ 57 (149)
T d1z0xa2 7 LLAFMENYYDLYQQFPCAVAIEIQTVPAYPQRLRHLNQMMGILRE-AGFSPE 57 (149)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHTSCCCSHHHHHHHHHHHHHHHH-TTCCHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHhhhccccchHHHHHHHHHHHHHHc-cCCCHH
Confidence 467778899999999998887765422 3344555555543 344443
No 10
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=7.32 E-value=1.4e+02 Score=22.12 Aligned_cols=25 Identities=16% Similarity=0.028 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhc
Q 029963 20 PLRTKAITAGVLAGCSDAIAQKISG 44 (184)
Q Consensus 20 Pl~t~~~t~~~l~~~gD~~aQ~~~~ 44 (184)
-+...++.++.+...+|.+++.+..
T Consensus 275 ~lp~s~l~Ga~lll~aD~l~r~i~~ 299 (324)
T d1l7va_ 275 LLPGCALAGASALLLADIVARLALA 299 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3667788888888889998888754
Done!