BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029964
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|V Chain V, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 205
Score = 142 bits (359), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGM 61
I C R AAD+Q V+D V Y L H+I+L +P V AA+L + + Y + L G+
Sbjct: 40 RIFCCRS-GSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGI 98
Query: 62 IVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVK 121
I+ GWD EGG++Y VP+GG ++ Q FAI Y+YG+ D ++EGMTKEE Q
Sbjct: 99 IIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTAN 158
Query: 122 AVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLP 158
A++LA+ RDG+SGGV+R I GV R+ GD +P
Sbjct: 159 ALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIP 195
>pdb|3UNB|N Chain N, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|BB Chain b, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|PP Chain p, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|4 Chain 4, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|N Chain N, Mouse Constitutive 20s Proteasome
pdb|3UNE|BB Chain b, Mouse Constitutive 20s Proteasome
pdb|3UNE|PP Chain p, Mouse Constitutive 20s Proteasome
pdb|3UNE|4 Chain 4, Mouse Constitutive 20s Proteasome
Length = 205
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGM 61
+I C R AAD+Q V+D V Y L H+I+L +P V AA+L + + Y + L G+
Sbjct: 40 HIFCCRS-GSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGI 98
Query: 62 IVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVK 121
I+ GWD EGG++Y VP+GG ++ Q FAI Y+YG+ D ++EGMTK+E Q
Sbjct: 99 IIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTAN 158
Query: 122 AVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLP 158
A++LA+ RDG+SGGV+R I GV R+ GD +P
Sbjct: 159 ALALAMERDGSSGGVIRLAAIQESGVERQVLLGDQIP 195
>pdb|3UNF|N Chain N, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|BB Chain b, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|N Chain N, Mouse 20s Immunoproteasome
pdb|3UNH|BB Chain b, Mouse 20s Immunoproteasome
Length = 199
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Query: 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYE 70
AAD+Q ++D Y L H ++L +P V AAN+V+ +SY + L +IV GWD+ E
Sbjct: 48 SAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQRE 107
Query: 71 GGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
GG++YG +GG +I QPF I Y+YG+ D A+K GMT EE + A++LA+ RD
Sbjct: 108 GGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRD 166
Query: 131 GASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 163
G+SGGV+ VTI + GV + GD LP +++E
Sbjct: 167 GSSGGVIYLVTITAAGVDHRVILGDELPKFYDE 199
>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|2 Chain 2, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|N Chain N, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|2 Chain 2, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|N Chain N, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|U Chain U, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|N Chain N, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|2 Chain 2, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|N Chain N, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|2 Chain 2, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|N Chain N, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|1 Chain 1, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|N Chain N, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|1 Chain 1, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|N Chain N, Proteasome Inhibition By Fellutamide B
pdb|3D29|2 Chain 2, Proteasome Inhibition By Fellutamide B
pdb|3E47|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|N Chain N, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|2 Chain 2, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|N Chain N, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|2 Chain 2, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|N Chain N, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|2 Chain 2, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|N Chain N, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|2 Chain 2, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|N Chain N, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|2 Chain 2, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|N Chain N, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|2 Chain 2, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|N Chain N, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|BB Chain b, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|H Chain H, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|N Chain N, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|BB Chain b, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|N Chain N, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|BB Chain b, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 196
Score = 120 bits (300), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 93/144 (64%), Gaps = 2/144 (1%)
Query: 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYE 70
AAD+Q ++D V+Y L +T Q G P+T + AA++ + L Y NK+ L G+IV G+D
Sbjct: 48 SAADTQAIADIVQYHLELYTSQYGTPST-ETAASVFKELCYENKDNLTAGIIVAGYDDKN 106
Query: 71 GGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
G++Y +PLGG++ + P+AI ++YG+ D+ ++E M+KEE + ++S AI D
Sbjct: 107 KGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWD 166
Query: 131 GASGGVVRTVTINSEGVSRK-FYP 153
G+SGGV+R V + + GV R FYP
Sbjct: 167 GSSGGVIRMVVLTAAGVERLIFYP 190
>pdb|1VSY|H Chain H, Proteasome Activator Complex
pdb|1VSY|V Chain V, Proteasome Activator Complex
pdb|3L5Q|B Chain B, Proteasome Activator Complex
pdb|3L5Q|D Chain D, Proteasome Activator Complex
Length = 196
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 93/144 (64%), Gaps = 2/144 (1%)
Query: 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYE 70
AAD+Q ++D V+Y L +T Q G P+T + AA++ + L Y NK+ L G+IV G+D
Sbjct: 48 SAADTQAIADIVQYHLELYTSQYGTPST-ETAASVFKELCYENKDNLTAGIIVAGYDDKN 106
Query: 71 GGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
G++Y +PLGG++ + P+AI ++YG+ D+ ++E M+KEE + ++S AI D
Sbjct: 107 KGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWD 166
Query: 131 GASGGVVRTVTINSEGVSRK-FYP 153
G+SGGV+R V + + GV R FYP
Sbjct: 167 GSSGGVIRMVVLTAAGVERLIFYP 190
>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|1 Chain 1, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 215
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 93/144 (64%), Gaps = 2/144 (1%)
Query: 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYE 70
AAD+Q ++D V+Y L +T Q G P+T + AA++ + L Y NK+ L G+IV G+D
Sbjct: 67 SAADTQAIADIVQYHLELYTSQYGTPST-ETAASVFKELCYENKDNLTAGIIVAGYDDKN 125
Query: 71 GGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
G++Y +PLGG++ + P+AI ++YG+ D+ ++E M+KEE + ++S AI D
Sbjct: 126 KGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWD 185
Query: 131 GASGGVVRTVTINSEGVSRK-FYP 153
G+SGGV+R V + + GV R FYP
Sbjct: 186 GSSGGVIRMVVLTAAGVERLIFYP 209
>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
Length = 205
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 93/144 (64%), Gaps = 2/144 (1%)
Query: 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYE 70
AAD+Q ++D V+Y L +T Q G P+T + AA++ + L Y NK+ L G+IV G+D
Sbjct: 57 SAADTQAIADIVQYHLELYTSQYGTPST-ETAASVFKELCYENKDNLTAGIIVAGYDDKN 115
Query: 71 GGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
G++Y +PLGG++ + P+AI ++YG+ D+ ++E M+KEE + ++S AI D
Sbjct: 116 KGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWD 175
Query: 131 GASGGVVRTVTINSEGVSRK-FYP 153
G+SGGV+R V + + GV R FYP
Sbjct: 176 GSSGGVIRMVVLTAAGVERLIFYP 199
>pdb|3UNF|K Chain K, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Y Chain Y, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|K Chain K, Mouse 20s Immunoproteasome
pdb|3UNH|Y Chain Y, Mouse 20s Immunoproteasome
Length = 204
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVR--LLSYNNKNFLQTGMIVGGWDKY 69
AAD Q + + ++ G+ +V A+ L+ +L Y L G ++ GWDK
Sbjct: 49 AADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMG-LSMGSMICGWDK- 106
Query: 70 EGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIAR 129
+G +Y V GT + Y YG D +++ ++ EEA L +A++ A R
Sbjct: 107 KGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHR 166
Query: 130 DGASGGVVRTVTINSEG 146
D SGGVV + +G
Sbjct: 167 DNYSGGVVNMYHMKEDG 183
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|BB Chain b, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|CC Chain c, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|DD Chain d, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|EE Chain e, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|FF Chain f, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|GG Chain g, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|HH Chain h, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|II Chain i, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|JJ Chain j, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|KK Chain k, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|LL Chain l, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|MM Chain m, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|NN Chain n, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 219
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 42 AANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGV-PLGGTIIEQPFAIXXXXXXYLY 99
A L+ + ++++ F T +I+GG+D EG K++ + PLGG E+ F Y
Sbjct: 80 CATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAY 139
Query: 100 GFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGV 147
G + + M+ EE +L + A+ A+ RD SG + I +GV
Sbjct: 140 GVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGV 187
>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|I Chain I, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|J Chain J, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|K Chain K, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|L Chain L, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|M Chain M, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|N Chain N, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|V Chain V, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|W Chain W, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|X Chain X, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|H Chain H, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|I Chain I, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|J Chain J, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|K Chain K, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|L Chain L, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|M Chain M, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|N Chain N, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|V Chain V, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|W Chain W, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|X Chain X, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3JRM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 203
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 14 DSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFL--QTGMIVGGWDKYEG 71
D+Q + Y++ L + +Q ++ A L+ + N ++ ++VGG D
Sbjct: 51 DAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNM-LNQVKYMPYMVQLLVGGIDT--A 107
Query: 72 GKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
++ + G +E +A ++YG + + E MT +E LV++A+S A RD
Sbjct: 108 PHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDS 167
Query: 132 ASGGVVRTVTINSE 145
ASGG++ I +
Sbjct: 168 ASGGMIDVAVITRK 181
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|I Chain I, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|J Chain J, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|K Chain K, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|L Chain L, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|M Chain M, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|N Chain N, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YAR|H Chain H, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|I Chain I, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|J Chain J, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|K Chain K, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|L Chain L, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|M Chain M, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|N Chain N, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAU|H Chain H, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|I Chain I, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|J Chain J, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|K Chain K, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|L Chain L, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|M Chain M, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|N Chain N, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|3IPM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 217
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 14 DSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFL--QTGMIVGGWDKYEG 71
D+Q + Y++ L + +Q ++ A L+ + N ++ ++VGG D
Sbjct: 59 DAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNM-LNQVKYMPYMVQLLVGGIDT--A 115
Query: 72 GKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
++ + G +E +A ++YG + + E MT +E LV++A+S A RD
Sbjct: 116 PHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDS 175
Query: 132 ASGGVVRTVTINSE 145
ASGG++ I +
Sbjct: 176 ASGGMIDVAVITRK 189
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|P Chain P, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Q Chain Q, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|R Chain R, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|S Chain S, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|T Chain T, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|U Chain U, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|V Chain V, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|W Chain W, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|X Chain X, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Y Chain Y, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Z Chain Z, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|1 Chain 1, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|2 Chain 2, Proteasome From Thermoplasma Acidophilum
Length = 211
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 14 DSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFL--QTGMIVGGWDKYEG 71
D+Q + Y++ L + +Q ++ A L+ + N ++ ++VGG D
Sbjct: 59 DAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNM-LNQVKYMPYMVQLLVGGIDT--A 115
Query: 72 GKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
++ + G +E +A ++YG + + E MT +E LV++A+S A RD
Sbjct: 116 PHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDS 175
Query: 132 ASGGVVRTVTINSE 145
ASGG++ I +
Sbjct: 176 ASGGMIDVAVITRK 189
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|I Chain I, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|J Chain J, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|K Chain K, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|L Chain L, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|M Chain M, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|N Chain N, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 202
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 14 DSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLL--SYNNKNFLQTGMIVGGWDKYEG 71
D+Q ++ ++ + + I+ + TV+ A L L SY +L +++GG D EG
Sbjct: 51 DAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYL-VQLLIGGIDS-EG 108
Query: 72 GKIYGV-PLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
IY + P+GG I E+ YG + + + +EA +L V+A+ A+ RD
Sbjct: 109 KSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRD 168
Query: 131 GASGGVVRTVTINSE 145
ASG + V I +
Sbjct: 169 SASGDGIDVVKITED 183
>pdb|4B4T|5 Chain 5, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 287
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYE 70
AAD Q ++ H ++ + +V A+ ++ L Y K L G ++ G+ + E
Sbjct: 124 AADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKE 183
Query: 71 GGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
G IY V GT ++ + YG D +K ++ E+A L +++ A RD
Sbjct: 184 GPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRD 243
Query: 131 GASGGVVRTVTINSEG 146
SGG V + +G
Sbjct: 244 AYSGGSVNLYHVTEDG 259
>pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
Length = 287
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYE 70
AAD Q ++ H ++ + +V A+ ++ L Y K L G ++ G+ + E
Sbjct: 124 AADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKE 183
Query: 71 GGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
G IY V GT ++ + YG D +K ++ E+A L +++ A RD
Sbjct: 184 GPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRD 243
Query: 131 GASGGVVRTVTINSEG 146
SGG V + +G
Sbjct: 244 AYSGGSVNLYHVTEDG 259
>pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|W Chain W, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 234
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEG 71
AAD+ + + L H++ G+ V A +++ + + + ++ +++GG D G
Sbjct: 49 AADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVD-VTG 107
Query: 72 GKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
+Y + G+ + P+ F+ ++ M +EEA+ LV +A++ I D
Sbjct: 108 PHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDL 167
Query: 132 ASGGVVRTVTIN 143
SG + I+
Sbjct: 168 GSGSNIDLCVIS 179
>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Y Chain Y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|MM Chain m, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|1 Chain 1, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|K Chain K, Mouse Constitutive 20s Proteasome
pdb|3UNE|Y Chain Y, Mouse Constitutive 20s Proteasome
pdb|3UNE|MM Chain m, Mouse Constitutive 20s Proteasome
pdb|3UNE|1 Chain 1, Mouse Constitutive 20s Proteasome
Length = 205
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 38 TVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXX 96
+V A+ L+ + Y K L G ++ GWDK G Y G I F++
Sbjct: 75 SVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSV- 133
Query: 97 YLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEG 146
Y YG D+ + + EEA L +A+ A RD SGG V + +G
Sbjct: 134 YAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDG 183
>pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|V Chain V, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|JJ Chain j, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|XX Chain x, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|H Chain H, Mouse Constitutive 20s Proteasome
pdb|3UNE|V Chain V, Mouse Constitutive 20s Proteasome
pdb|3UNE|JJ Chain j, Mouse Constitutive 20s Proteasome
pdb|3UNE|XX Chain x, Mouse Constitutive 20s Proteasome
Length = 234
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEG 71
AAD+ + + L H++ G+ V A +++ + + + ++ +++GG D G
Sbjct: 49 AADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTG 107
Query: 72 GKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
+Y + G+ + P+ F+ ++ M +EEA++LV +A++ I D
Sbjct: 108 PHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDL 167
Query: 132 ASGGVVRTVTIN 143
SG + I+
Sbjct: 168 GSGSNIDLCVIS 179
>pdb|1G0U|K Chain K, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Y Chain Y, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|K Chain K, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|R Chain R, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|K Chain K, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Y Chain Y, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|K Chain K, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Y Chain Y, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|K Chain K, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Y Chain Y, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|K Chain K, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Y Chain Y, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|K Chain K, Proteasome Inhibition By Fellutamide B
pdb|3D29|Y Chain Y, Proteasome Inhibition By Fellutamide B
pdb|3E47|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|K Chain K, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Y Chain Y, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|K Chain K, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Y Chain Y, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|K Chain K, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Y Chain Y, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|K Chain K, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Y Chain Y, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|K Chain K, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Y Chain Y, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|K Chain K, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Y Chain Y, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|1G65|K Chain K, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Y Chain Y, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|3UN4|K Chain K, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Y Chain Y, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|K Chain K, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Y Chain Y, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|K Chain K, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Y Chain Y, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|L Chain L, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|K Chain K, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Y Chain Y, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|K Chain K, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Y Chain Y, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 212
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYE 70
AAD Q ++ H ++ + +V A+ ++ L Y K L G ++ G+ + E
Sbjct: 49 AADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKE 108
Query: 71 GGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
G IY V GT ++ + YG D +K ++ E+A L +++ A RD
Sbjct: 109 GPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRD 168
Query: 131 GASGGVVRTVTINSEG 146
SGG V + +G
Sbjct: 169 AYSGGSVNLYHVTEDG 184
>pdb|1RYP|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1FNT|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1VSY|L Chain L, Proteasome Activator Complex
pdb|1VSY|Z Chain Z, Proteasome Activator Complex
pdb|3L5Q|P Chain P, Proteasome Activator Complex
pdb|3L5Q|2 Chain 2, Proteasome Activator Complex
Length = 212
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYE 70
AAD Q ++ H ++ + +V A+ ++ L Y K L G ++ G+ + E
Sbjct: 49 AADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKE 108
Query: 71 GGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
G IY V GT ++ + YG D +K ++ E+A L +++ A RD
Sbjct: 109 GPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRD 168
Query: 131 GASGGVVRTVTINSEG 146
SGG V + +G
Sbjct: 169 AYSGGSVNLYHVTEDG 184
>pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Z Chain Z, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 204
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 4/127 (3%)
Query: 38 TVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXX 96
+V A+ L+ + Y K L G ++ GWDK G Y G I F++
Sbjct: 75 SVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSV- 133
Query: 97 YLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDT 156
Y YG D+ + + E+A L +A+ A RD SGG V + +G R D
Sbjct: 134 YAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIR--VSSDN 191
Query: 157 LPLWHEE 163
+ HE+
Sbjct: 192 VADLHEK 198
>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|C Chain C, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|D Chain D, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|E Chain E, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|F Chain F, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|G Chain G, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|H Chain H, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|I Chain I, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|J Chain J, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|K Chain K, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|L Chain L, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|M Chain M, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|N Chain N, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|O Chain O, Proteasome From Thermoplasma Acidophilum
pdb|1YA7|A Chain A, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|B Chain B, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|C Chain C, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|D Chain D, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|E Chain E, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|F Chain F, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|G Chain G, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|3C91|A Chain A, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|B Chain B, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|C Chain C, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|D Chain D, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|E Chain E, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|F Chain F, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|G Chain G, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|O Chain O, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|P Chain P, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|R Chain R, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|S Chain S, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|T Chain T, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|U Chain U, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|A Chain A, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|B Chain B, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|C Chain C, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|D Chain D, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|E Chain E, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|F Chain F, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|G Chain G, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|O Chain O, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|P Chain P, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|R Chain R, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|S Chain S, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|T Chain T, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|U Chain U, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3IPM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 233
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTG--------MIVG 64
AD++ + D+ R Q + G ++ NLV+ ++ + + Q G +I
Sbjct: 83 ADARVLVDFARISAQQEKVTYGSLVNIE---NLVKRVADQMQQYTQYGGVRPYGVSLIFA 139
Query: 65 GWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 124
G D+ G +++ GTI E + F ++ +KE + ++EA L +KA+
Sbjct: 140 GIDQI-GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALK 198
Query: 125 LAI 127
++
Sbjct: 199 SSL 201
>pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|B Chain B, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|C Chain C, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|D Chain D, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|E Chain E, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|F Chain F, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|G Chain G, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
Length = 233
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTG--------MIVG 64
AD++ + D+ R Q + G ++ NLV+ ++ + + Q G +I
Sbjct: 83 ADARVLVDFARISAQQEKVTYGSLVNIE---NLVKRVADQMQQYTQYGGVRPYGVSLIFA 139
Query: 65 GWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 124
G D+ G +++ GTI E + F ++ +KE + ++EA L +KA+
Sbjct: 140 GIDQI-GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALK 198
Query: 125 LAI 127
++
Sbjct: 199 SSL 201
>pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 227
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTG--------MIVG 64
AD++ + D+ R Q + G ++ NLV+ ++ + + Q G +I
Sbjct: 77 ADARVLVDFARISAQQEKVTYGSLVNIE---NLVKRVADQMQQYTQYGGVRPYGVSLIFA 133
Query: 65 GWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 124
G D+ G +++ GTI E + F ++ +KE + ++EA L +KA+
Sbjct: 134 GIDQI-GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALK 192
Query: 125 LAI 127
++
Sbjct: 193 SSL 195
>pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTG--------MIVG 64
AD++ + D+ R Q + G ++ NLV+ ++ + + Q G +I
Sbjct: 87 ADARVLVDFARISAQQEKVTYGSLVNIE---NLVKRVADQMQQYTQYGGVRPYGVSLIFA 143
Query: 65 GWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 124
G D+ G +++ GTI E + F ++ +KE + ++EA L +KA+
Sbjct: 144 GIDQI-GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALK 202
Query: 125 LAI 127
++
Sbjct: 203 SSL 205
>pdb|3UNB|I Chain I, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|W Chain W, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|KK Chain k, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|YY Chain y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|I Chain I, Mouse Constitutive 20s Proteasome
pdb|3UNE|W Chain W, Mouse Constitutive 20s Proteasome
pdb|3UNE|KK Chain k, Mouse Constitutive 20s Proteasome
pdb|3UNE|YY Chain y, Mouse Constitutive 20s Proteasome
pdb|3UNF|I Chain I, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|W Chain W, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|I Chain I, Mouse 20s Immunoproteasome
pdb|3UNH|W Chain W, Mouse 20s Immunoproteasome
Length = 205
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF--LQTGMIVGGWD-K 68
A D QTV+ +++ L+ + ++ G+ ++V L Y K F T ++ G D K
Sbjct: 57 ATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYE-KRFGPYYTEPVIAGLDPK 115
Query: 69 YEGGKIYGVPL-GGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAI 127
I + L G ++ F + +YG + W+ M E + + +A+ A+
Sbjct: 116 TFKPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAV 175
Query: 128 ARDGASGGVVRTVTINSEGVSRK 150
RD SG V I + ++ +
Sbjct: 176 DRDAVSGMGVIVHVIEKDKITTR 198
>pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTG--------MIVG 64
AD++ + D+ R Q + G ++ NLV+ ++ + + Q G +I
Sbjct: 87 ADARVLVDFARISAQQEKVTYGSLVNIE---NLVKRVADQMQQYTQYGGVRPYGVSLIFA 143
Query: 65 GWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 124
G D+ G +++ GTI E + F ++ +KE + ++EA L +KA+
Sbjct: 144 GIDQI-GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALK 202
Query: 125 LAI 127
++
Sbjct: 203 SSL 205
>pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|B Chain B, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|C Chain C, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|D Chain D, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|E Chain E, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|F Chain F, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|G Chain G, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
Length = 233
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTG--------MIVG 64
AD++ + D+ R Q + G ++ NLV+ ++ + + Q G +I
Sbjct: 83 ADARVLVDFARISAQQEKVTYGSLVNIE---NLVKRVADQMQQYTQYGGVRPYGVSLIFA 139
Query: 65 GWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 124
G D+ G +++ GTI E + F ++ +KE + ++EA L +KA+
Sbjct: 140 GIDQI-GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALK 198
Query: 125 LAI 127
++
Sbjct: 199 SSL 201
>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|2 Chain 2, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 261
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 1/126 (0%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEG 71
AAD++ V+ + + H++ + V A +++ + + + +IV G D G
Sbjct: 78 AADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDP-TG 136
Query: 72 GKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
++ + G+ + + WK+ +TKEEA +L A+ I D
Sbjct: 137 SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDL 196
Query: 132 ASGGVV 137
SG V
Sbjct: 197 GSGSNV 202
>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|H Chain H, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|V Chain V, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|H Chain H, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|V Chain V, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|H Chain H, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|O Chain O, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|H Chain H, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|V Chain V, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|H Chain H, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|V Chain V, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|H Chain H, Proteasome Inhibition By Fellutamide B
pdb|3D29|V Chain V, Proteasome Inhibition By Fellutamide B
pdb|3E47|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|H Chain H, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|V Chain V, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|I Chain I, Proteasome Activator Complex
pdb|1VSY|W Chain W, Proteasome Activator Complex
pdb|3L5Q|M Chain M, Proteasome Activator Complex
pdb|3L5Q|Y Chain Y, Proteasome Activator Complex
pdb|3MG4|H Chain H, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|V Chain V, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|H Chain H, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|V Chain V, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|H Chain H, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|V Chain V, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|H Chain H, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|V Chain V, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|H Chain H, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|V Chain V, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|H Chain H, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|V Chain V, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|H Chain H, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|V Chain V, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|H Chain H, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|V Chain V, 20s Yeast Proteasome In Complex With Glidobactin
Length = 222
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 1/126 (0%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEG 71
AAD++ V+ + + H++ + V A +++ + + + +IV G D G
Sbjct: 49 AADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDP-TG 107
Query: 72 GKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
++ + G+ + + WK+ +TKEEA +L A+ I D
Sbjct: 108 SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDL 167
Query: 132 ASGGVV 137
SG V
Sbjct: 168 GSGSNV 173
>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|H Chain H, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|V Chain V, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|H Chain H, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|V Chain V, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3UN4|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4G4S|I Chain I, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 232
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 1/126 (0%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEG 71
AAD++ V+ + + H++ + V A +++ + + + +IV G D G
Sbjct: 49 AADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDP-TG 107
Query: 72 GKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
++ + G+ + + WK+ +TKEEA +L A+ I D
Sbjct: 108 SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDL 167
Query: 132 ASGGVV 137
SG V
Sbjct: 168 GSGSNV 173
>pdb|1IRU|J Chain J, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|X Chain X, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 205
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF--LQTGMIVGGWD-K 68
A D QTV+ +++ L+ + ++ G+ ++V L Y K F T ++ G D K
Sbjct: 57 ATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYE-KRFGPYYTEPVIAGLDPK 115
Query: 69 YEGGKIYGVPL-GGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAI 127
I + L G ++ F + +YG + W+ M + + + +A+ A+
Sbjct: 116 TFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAV 175
Query: 128 ARDGASGGVVRTVTINSEGVSRK 150
RD SG V I + ++ +
Sbjct: 176 DRDAVSGMGVIVHIIEKDKITTR 198
>pdb|1AXC|A Chain A, Human Pcna
pdb|1U76|A Chain A, Crystal Structure Of Hpcna Bound To Residues 452-466 Of
The Dna Polymerase-Delta-P66 Subunit
pdb|1U76|C Chain C, Crystal Structure Of Hpcna Bound To Residues 452-466 Of
The Dna Polymerase-Delta-P66 Subunit
pdb|1U76|E Chain E, Crystal Structure Of Hpcna Bound To Residues 452-466 Of
The Dna Polymerase-Delta-P66 Subunit
pdb|1U7B|A Chain A, Crystal Structure Of Hpcna Bound To Residues 331-350 Of
The Flap Endonuclease-1 (Fen1)
pdb|1VYJ|A Chain A, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYJ|C Chain C, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYJ|E Chain E, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYJ|G Chain G, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYJ|I Chain I, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYJ|K Chain K, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYM|A Chain A, Native Human Pcna
pdb|1VYM|B Chain B, Native Human Pcna
pdb|1VYM|C Chain C, Native Human Pcna
pdb|1W60|A Chain A, Native Human Pcna
pdb|1W60|B Chain B, Native Human Pcna
pdb|1UL1|A Chain A, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|1UL1|B Chain B, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|1UL1|C Chain C, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|2ZVK|A Chain A, Crystal Structure Of Pcna In Complex With Dna Polymerase
Eta Fragment
pdb|2ZVK|B Chain B, Crystal Structure Of Pcna In Complex With Dna Polymerase
Eta Fragment
pdb|2ZVK|C Chain C, Crystal Structure Of Pcna In Complex With Dna Polymerase
Eta Fragment
pdb|2ZVL|A Chain A, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVL|B Chain B, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVL|C Chain C, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVL|D Chain D, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVL|E Chain E, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVL|F Chain F, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVM|A Chain A, Crystal Structure Of Pcna In Complex With Dna Polymerase
Iota Fragment
pdb|2ZVM|B Chain B, Crystal Structure Of Pcna In Complex With Dna Polymerase
Iota Fragment
pdb|2ZVM|C Chain C, Crystal Structure Of Pcna In Complex With Dna Polymerase
Iota Fragment
pdb|3P87|A Chain A, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3P87|B Chain B, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3P87|C Chain C, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3P87|D Chain D, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3P87|E Chain E, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3P87|F Chain F, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3VKX|A Chain A, Structure Of Pcna
pdb|3TBL|A Chain A, Structure Of Mono-Ubiquitinated Pcna: Implications For Dna
Polymerase Switching And Okazaki Fragment Maturation
pdb|3TBL|B Chain B, Structure Of Mono-Ubiquitinated Pcna: Implications For Dna
Polymerase Switching And Okazaki Fragment Maturation
pdb|3TBL|C Chain C, Structure Of Mono-Ubiquitinated Pcna: Implications For Dna
Polymerase Switching And Okazaki Fragment Maturation
Length = 261
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQP 36
N D L L+F+A + + VSDY + QLG P
Sbjct: 95 NADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIP 129
>pdb|1AXC|C Chain C, Human Pcna
pdb|1AXC|E Chain E, Human Pcna
Length = 261
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQP 36
N D L L+F+A + + VSDY + QLG P
Sbjct: 95 NADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIP 129
>pdb|2L5C|A Chain A, Solution Structures Of Human Piwi-Like 1 Paz Domain
pdb|2L5D|A Chain A, Solution Structures Of Human Piwi-Like 1 Paz Domain With
Ssrna (5'- Pugaca)
Length = 134
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 5 CLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF 56
C + + S+TV D++ F HQ Q K LV L YNNK +
Sbjct: 1 CTDVSHKVLRSETVLDFMFNFYHQTEEHKFQEQVSKELIGLVVLTKYNNKTY 52
>pdb|2I5U|A Chain A, Crystal Structure Of Dnad Domain Protein From Enterococcus
Faecalis. Structural Genomics Target Apc85179
Length = 83
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 107 KEGMTKEEAEQLVVKAVSLAI 127
K G +++EAEQL+VKA+ +AI
Sbjct: 33 KIGASQKEAEQLIVKAIEIAI 53
>pdb|3O3I|X Chain X, Crystal Structure Of Human Hiwi1 Paz Domain (Residues
277-399) In Complex With 14-Mer Rna (12-Bp + 2-Nt
Overhang) Containing 2'-Oh At Its 3'-End
Length = 124
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 15 SQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF 56
S+TV D++ F HQ Q K LV L YNNK +
Sbjct: 1 SETVLDFMFNFYHQTEEHKFQEQVSKELIGLVVLTKYNNKTY 42
>pdb|3O7V|X Chain X, Crystal Structure Of Human Hiwi1 (V361m) Paz Domain
(Residues 277-399) In Complex With 14-Mer Rna (12-Bp +
2-Nt Overhang) Containing 2'-Och3 At Its 3'-End
Length = 124
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 15 SQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF 56
S+TV D+ F HQ Q K LV L YNNK +
Sbjct: 1 SETVLDFXFNFYHQTEEHKFQEQVSKELIGLVVLTKYNNKTY 42
>pdb|3O6E|X Chain X, Crystal Structure Of Human Hiwi1 Paz Domain (Residues
277-399) In Complex With 14-Mer Rna (12-Bp + 2-Nt
Overhang) Containing 2'-Och3 At Its 3'-End
Length = 124
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 15 SQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF 56
S+TV D+ F HQ Q K LV L YNNK +
Sbjct: 1 SETVLDFXFNFYHQTEEHKFQEQVSKELIGLVVLTKYNNKTY 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,473,886
Number of Sequences: 62578
Number of extensions: 213325
Number of successful extensions: 598
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 51
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)