BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029964
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LD27|PSB6_ARATH Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1
SV=2
Length = 233
Score = 323 bits (828), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 150/173 (86%), Positives = 162/173 (93%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEG 71
AADSQ VSDYVRYFLHQHTIQ GQPATVKV+ANL+R+L+YNNKN LQTG+IVGGWDKYEG
Sbjct: 61 AADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEG 120
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
GKIYG+PLGGT++EQPFAIGGSGSSYLYGFFDQAWK+ MTKEEAEQLVVKAVSLAIARDG
Sbjct: 121 GKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARDG 180
Query: 132 ASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQNSLLDMMNVASPEPMNM 184
ASGGVVRTV INSEGV+R FYPGD L LWHEELEPQNSLLD++N A PEPM M
Sbjct: 181 ASGGVVRTVIINSEGVTRNFYPGDKLQLWHEELEPQNSLLDILNAAGPEPMAM 233
>sp|P93395|PSB6_TOBAC Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1
Length = 234
Score = 307 bits (787), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 145/171 (84%), Positives = 158/171 (92%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEG 71
AADSQ VSDYVRYFLHQHTIQLGQPATVKVAANL RLLSYNNK+ LQTGMI+GGWDKYEG
Sbjct: 62 AADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEG 121
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
GKIYG+P GGT++EQPFAIGGSGSSYLYGFFDQAWKEGMT+EEAE+LVV AVSLAIARDG
Sbjct: 122 GKIYGIPPGGTVLEQPFAIGGSGSSYLYGFFDQAWKEGMTQEEAEKLVVTAVSLAIARDG 181
Query: 132 ASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQNSLLDMMNVASPEPM 182
ASGGVVRTVTIN +G +RKFY GD+L LWHEELEP NSLLD++ +SP PM
Sbjct: 182 ASGGVVRTVTINKDGATRKFYSGDSLQLWHEELEPVNSLLDVVFASSPVPM 232
>sp|Q55GJ6|PSB6_DICDI Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6
PE=1 SV=1
Length = 214
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 110/152 (72%)
Query: 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYE 70
AAD+Q +SDYVRY+L HT +L VK AA+L +LL Y+NKN L G+IV GWDK++
Sbjct: 62 SAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQ 121
Query: 71 GGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
GG +Y + LGG++++QPFAIGGSGS+Y+YG+ D +K MTK+E + V +++LA+ RD
Sbjct: 122 GGSVYNISLGGSMVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDECIEFVQNSLALAMFRD 181
Query: 131 GASGGVVRTVTINSEGVSRKFYPGDTLPLWHE 162
G+SGGV+R I+ GV RK PG+ LP + E
Sbjct: 182 GSSGGVIRLCIIDKNGVERKMIPGNNLPRFWE 213
>sp|O43063|PSB1_SCHPO Probable proteasome subunit beta type-1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pre3 PE=3 SV=1
Length = 226
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 107/155 (69%), Gaps = 1/155 (0%)
Query: 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGM 61
NI C R AAD+QTV+D ++Y+L + IQ G +V AA L + Y NKN L G+
Sbjct: 64 NIWCCRS-GSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGL 122
Query: 62 IVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVK 121
IV G+D+ GG +Y +PLGG++ +QP AIGGSGS+++YGF D ++E MT+EEA + +
Sbjct: 123 IVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKN 182
Query: 122 AVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDT 156
AV+LA+ RDG+SGG +R V +N +G+ RKF+ DT
Sbjct: 183 AVALAMERDGSSGGTIRMVILNKDGMERKFFAIDT 217
>sp|Q3MHN0|PSB6_BOVIN Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1
Length = 239
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGM 61
I C R AAD+Q V+D V Y L H+I+L +P V AA+L + + Y + L G+
Sbjct: 74 RIFCCRS-GSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGI 132
Query: 62 IVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVK 121
I+ GWD EGG++Y VP+GG ++ QPFAIGGSGSSY+YG+ D ++EGMTKEE Q
Sbjct: 133 IIAGWDPQEGGQVYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECLQFTAN 192
Query: 122 AVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLP 158
A++LA+ RDG+SGGV+R I GV R+ GD +P
Sbjct: 193 ALALAMERDGSSGGVIRLAAIAEPGVERQVLLGDQIP 229
>sp|P28072|PSB6_HUMAN Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4
Length = 239
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Query: 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGM 61
I C R AAD+Q V+D V Y L H+I+L +P V AA+L + + Y + L G+
Sbjct: 74 RIFCCRS-GSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGI 132
Query: 62 IVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVK 121
I+ GWD EGG++Y VP+GG ++ Q FAIGGSGSSY+YG+ D ++EGMTKEE Q
Sbjct: 133 IIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTAN 192
Query: 122 AVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLP 158
A++LA+ RDG+SGGV+R I GV R+ GD +P
Sbjct: 193 ALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIP 229
>sp|Q60692|PSB6_MOUSE Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3
Length = 238
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGM 61
+I C R AAD+Q V+D V Y L H+I+L +P V AA+L + + Y + L G+
Sbjct: 73 HIFCCRS-GSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGI 131
Query: 62 IVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVK 121
I+ GWD EGG++Y VP+GG ++ Q FAIGGSGSSY+YG+ D ++EGMTK+E Q
Sbjct: 132 IIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTAN 191
Query: 122 AVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLP 158
A++LA+ RDG+SGGV+R I GV R+ GD +P
Sbjct: 192 ALALAMERDGSSGGVIRLAAIQESGVERQVLLGDQIP 228
>sp|P28073|PSB6_RAT Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1
SV=3
Length = 238
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGM 61
+I C R AAD+Q V+D V Y L H+I+L +P V AA+L + + Y + L G+
Sbjct: 73 HIFCCRS-GSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGI 131
Query: 62 IVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVK 121
I+ GWD EGG++Y VP+GG ++ Q FAIGGSGSSY+YG+ D ++EGMTK+E Q
Sbjct: 132 IIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTAN 191
Query: 122 AVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLP 158
A++LA+ RDG+SGGV+R I GV R+ GD +P
Sbjct: 192 ALALAMERDGSSGGVIRLAAIQQSGVERQVLLGDQIP 228
>sp|A7KII6|PB6LB_SALSA Proteasome subunit beta type-6-B like protein OS=Salmo salar
GN=psmb6l-b PE=3 SV=1
Length = 217
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 97/151 (64%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGG 72
AD+Q V+ ++ + H+IQ+ P VK AA++++ L YNNK LQ G I GWD+ +G
Sbjct: 67 ADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGP 126
Query: 73 KIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGA 132
++Y V LGG ++ QPF IGGSGS+Y+YG+ D +K M+KEE Q A++LA+ RD
Sbjct: 127 QVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNV 186
Query: 133 SGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 163
SGGV V I EGV PGD LP +H+E
Sbjct: 187 SGGVAHLVVITEEGVEHVVIPGDKLPKFHDE 217
>sp|A7KE01|PB6LA_SALSA Proteasome subunit beta type-6-A like protein OS=Salmo salar
GN=psmb6l-a PE=3 SV=1
Length = 217
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 97/151 (64%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGG 72
AD+Q V+ ++ + H+IQ+ P VK AA++++ L YNNK LQ G I GWD+ +G
Sbjct: 67 ADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGP 126
Query: 73 KIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGA 132
++Y V LGG ++ QPF IGGSGS+Y+YG+ D +K M+KEE Q A++LA+ RD
Sbjct: 127 QVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALALAMGRDNV 186
Query: 133 SGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 163
SGGV V I EGV PGD LP +H+E
Sbjct: 187 SGGVAHLVVITEEGVEHVVIPGDKLPKFHDE 217
>sp|P28065|PSB9_HUMAN Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2
Length = 219
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYE 70
AAD+Q V+D Y L H I+L +P V AAN+VR +SY + L ++V GWD+ E
Sbjct: 68 SAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQRE 127
Query: 71 GGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
GG++YG LGG + QPFAIGGSGS+++YG+ D A+K GM+ EE + A++LA++RD
Sbjct: 128 GGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRD 186
Query: 131 GASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 163
G+SGGV+ VTI + GV + G+ LP +++E
Sbjct: 187 GSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 219
>sp|Q9PT26|PSB9_ONCMY Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2
SV=1
Length = 217
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/152 (46%), Positives = 105/152 (69%), Gaps = 1/152 (0%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEG 71
AAD+QT+++ V Y L H+I++G+ V+ AA LV+ +SY K L +IV GWDK G
Sbjct: 67 AADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGG 126
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
G++Y V L G + QPFA+GGSGSSY+YGF D +++ M+KE+ +Q VV +SLA++RDG
Sbjct: 127 GQVY-VTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDG 185
Query: 132 ASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 163
+SGGV VTI+ +G K G+ LP ++++
Sbjct: 186 SSGGVAYLVTIDEKGAEEKCILGNELPTFYDQ 217
>sp|Q9DD33|PSB9_SALSA Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1
Length = 217
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 105/152 (69%), Gaps = 1/152 (0%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEG 71
AAD+QT+++ V Y L H+I++G+ V+ AA LV+ +SY K L +IV GWDK G
Sbjct: 67 AADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGG 126
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
G++Y V L G + QPFA+GGSGS+Y+YGF D +++ M+KE+ +Q VV +SLA++RDG
Sbjct: 127 GQVY-VTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDG 185
Query: 132 ASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 163
+SGGV VTI+ +G K G+ LP ++++
Sbjct: 186 SSGGVAYLVTIDEKGAEEKCILGNELPTFYDQ 217
>sp|Q3SZC2|PSB9_BOVIN Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1
Length = 219
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 100/153 (65%), Gaps = 1/153 (0%)
Query: 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYE 70
AAD+Q ++D Y L H ++L +P V AAN+VR ++Y + L ++V GWD+ E
Sbjct: 68 SAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYREDLSAHLMVAGWDQRE 127
Query: 71 GGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
GG++YG + G +I QPFAIGGSGS+Y+YG+ D A+K GM+ EE + A++LA+ RD
Sbjct: 128 GGQVYGT-MSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIALAMKRD 186
Query: 131 GASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 163
G+SGGV+ TI GV + GD LP +++E
Sbjct: 187 GSSGGVIYLATITGAGVDHRVILGDELPRFYDE 219
>sp|Q8UW64|PSB9_ORYLA Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3
SV=1
Length = 217
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 101/152 (66%), Gaps = 1/152 (0%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEG 71
AAD+QT+++ V Y L H++++ + V+ AA LV+ +SY K L +IV GWD+ +G
Sbjct: 67 AADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDG 126
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
G+++ LGG + QPFAIGGSGSSY+YGF D ++ GMTKEE ++ VV ++LA+ RDG
Sbjct: 127 GQVFAT-LGGLLTRQPFAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTLALAMNRDG 185
Query: 132 ASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 163
+SGGV VTI+ K G+ LP + ++
Sbjct: 186 SSGGVAYIVTIDEHSTDEKVILGNDLPTFFDQ 217
>sp|P28077|PSB9_RAT Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1
SV=2
Length = 219
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 105/153 (68%), Gaps = 1/153 (0%)
Query: 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYE 70
AAD+Q ++D Y L H ++L +P V AAN+V+ +SY + L ++V GWD++E
Sbjct: 68 SAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYREDLLAHLMVAGWDQHE 127
Query: 71 GGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
GG++YG +GG +I QPFAIGGSGS+Y+YG+ D A+K GMT EE + A++LA+ RD
Sbjct: 128 GGQVYGT-MGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRD 186
Query: 131 GASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 163
G+SGGV+ VTI ++GV + GD LP +++E
Sbjct: 187 GSSGGVIYLVTITADGVDHRVILGDELPKFYDE 219
>sp|O35524|PSB9_MUSSI Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1
Length = 219
Score = 140 bits (352), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 102/153 (66%), Gaps = 1/153 (0%)
Query: 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYE 70
AAD+Q ++D Y L H ++L +P V AAN+V+ +SY + L +IV GWD+ E
Sbjct: 68 SAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQRE 127
Query: 71 GGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
GG++YG +GG +I QPF IGGSGSSY+YG+ D A+K GMT EE + A++LA+ RD
Sbjct: 128 GGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRD 186
Query: 131 GASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 163
G+SGGV+ VTI + GV + GD LP +++E
Sbjct: 187 GSSGGVIYLVTITAAGVDHRVILGDELPRFYDE 219
>sp|P28076|PSB9_MOUSE Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1
Length = 219
Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 102/153 (66%), Gaps = 1/153 (0%)
Query: 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYE 70
AAD+Q ++D Y L H ++L +P V AAN+V+ +SY + L +IV GWD+ E
Sbjct: 68 SAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQRE 127
Query: 71 GGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
GG++YG +GG +I QPF IGGSGSSY+YG+ D A+K GMT EE + A++LA+ RD
Sbjct: 128 GGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRD 186
Query: 131 GASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 163
G+SGGV+ VTI + GV + GD LP +++E
Sbjct: 187 GSSGGVIYLVTITAAGVDHRVILGDELPKFYDE 219
>sp|O35523|PSB9_MUSPL Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1 SV=1
Length = 219
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Query: 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYE 70
AAD+Q ++D Y L H ++L +P V AAN+V+ +SY + L +IV GWD+ E
Sbjct: 68 SAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQRE 127
Query: 71 GGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
GG++YG +GG +I QPF IGGSGSSY+YG+ D A+K GMT EE + A++LA+ RD
Sbjct: 128 GGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTSEECRRFTTNAITLAMNRD 186
Query: 131 GASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 163
G+SGGV+ VTI GV + GD LP +++E
Sbjct: 187 GSSGGVIYLVTITVAGVDHRVILGDELPKFYDE 219
>sp|O35521|PSB9_MUSDU Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1
Length = 219
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Query: 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYE 70
AAD+Q ++D Y L H ++L +P V AAN+V+ +SY + L +IV GWD+ E
Sbjct: 68 SAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQRE 127
Query: 71 GGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
GG++YG +GG +I QPF IGGSGSSY+YG+ D A+K GMT EE + A++LA+ RD
Sbjct: 128 GGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRD 186
Query: 131 GASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 163
G+SGGV+ VTI + GV + GD LP ++ E
Sbjct: 187 GSSGGVIYLVTITAAGVDHRVILGDELPKFYGE 219
>sp|O35522|PSB9_MUSMB Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9
PE=1 SV=1
Length = 219
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Query: 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYE 70
AAD+Q ++D Y L H ++L +P V AAN+V+ +SY + L +IV GWD+ E
Sbjct: 68 SAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQRE 127
Query: 71 GGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
GG++YG +GG +I QPF I GSGSSY+YG+ D A+K GMT EE + A++LA+ RD
Sbjct: 128 GGQVYGT-MGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRD 186
Query: 131 GASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 163
G+SGGV+ VTI + GV + GD LP +++E
Sbjct: 187 GSSGGVIYLVTITAAGVDHRVILGDELPKFYDE 219
>sp|P38624|PSB1_YEAST Proteasome subunit beta type-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE3 PE=1 SV=2
Length = 215
Score = 130 bits (326), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEG 71
AAD+Q ++D V+Y L +T Q G P+T + AA++ + L Y NK+ L G+IV G+D
Sbjct: 68 AADTQAIADIVQYHLELYTSQYGTPST-ETAASVFKELCYENKDNLTAGIIVAGYDDKNK 126
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
G++Y +PLGG++ + P+AI GSGS+++YG+ D+ ++E M+KEE + ++S AI DG
Sbjct: 127 GEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDG 186
Query: 132 ASGGVVRTVTINSEGVSRK-FYP 153
+SGGV+R V + + GV R FYP
Sbjct: 187 SSGGVIRMVVLTAAGVERLIFYP 209
>sp|Q8SR11|PSB1_ENCCU Probable proteasome subunit beta type-1 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PRE3 PE=1 SV=1
Length = 203
Score = 116 bits (291), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 91/146 (62%), Gaps = 3/146 (2%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEG 71
+AD+Q +S Y+R +L ++ V+ AA L + Y N + L G+IV G+D +
Sbjct: 59 SADTQMISSYLRMYLSMYSQLEDSIPQVQRAAALASKIIYENPSLL-AGLIVAGYD--DK 115
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
+++ + LGG++ E+ +AIGGSGS+++YG+ D W+ GM+ EE + V AVS AI RD
Sbjct: 116 PRVFNISLGGSLTERDWAIGGSGSAFIYGYCDVNWRSGMSLEEGIRFVRNAVSCAINRDN 175
Query: 132 ASGGVVRTVTINSEGVSRKFYPGDTL 157
ASGG +R I+ GV R FYPGD +
Sbjct: 176 ASGGCIRMSAISRTGVQRYFYPGDKV 201
>sp|A9A2U7|PSB2_NITMS Proteasome subunit beta 2 OS=Nitrosopumilus maritimus (strain SCM1)
GN=psmB2 PE=3 SV=1
Length = 210
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEG 71
AD+Q + D +RY + H ++ P ++ A L L+ + N+ + ++VGG+D EG
Sbjct: 62 ADAQNIVDILRYHSNLHRVEKHGPISIHSLARLCSLIFHQNRGYPFMADILVGGYDA-EG 120
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
++ + + G++ ++ + GSGS YG ++ ++E +T EEA+++ ++AV AI R+
Sbjct: 121 PALFNIDMFGSVEKKAYVTTGSGSPVAYGLLEEEYREDLTVEEAKKIALRAVKAAIVRNI 180
Query: 132 ASGGVVRTVTINSEG 146
+G + ++ +G
Sbjct: 181 GTGDGINIAIMDKDG 195
>sp|A8M8R5|PSB2_CALMQ Proteasome subunit beta 2 OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=psmB2 PE=3
SV=1
Length = 200
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK--NFLQTGMIVGGWDKYE 70
AD QT++ +R + I++ +P +V+ AA L+ ++ + NK ++ M VGG D+ E
Sbjct: 59 ADIQTITKVIRANIANMEIEMKRPVSVRAAAKLLSIMLFQNKYMPYIAETM-VGGIDE-E 116
Query: 71 GGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
G K++ + G++IE FA G+G+ G + + +T +EA++L +KA+ AIARD
Sbjct: 117 GPKLFILDSWGSLIEDDFAALGNGARTAIGLIETGYSSSITVKEAKELAIKAIKEAIARD 176
Query: 131 GASGGVVRTVTINSEG 146
SG + T+ I G
Sbjct: 177 PTSGDGIDTLVITGNG 192
>sp|A1RWY6|PSB1_THEPD Proteasome subunit beta 1 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB1 PE=3 SV=1
Length = 200
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Query: 14 DSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGK 73
D+Q + D +R + G VK A L L+ + + L M++GG D +G
Sbjct: 63 DAQQLVDRLRVEARYYKTITGDSMPVKSVATLASLILFQYRPILSVQMLIGGVDS-DGPS 121
Query: 74 IYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGAS 133
++ V GT+ + + GSGS Y + ++E ++ EEA L VKAV++A+ARD S
Sbjct: 122 LFSVDWLGTVTREKYTATGSGSPYAVSLLEHEYREDLSLEEAVNLAVKAVNIALARDPGS 181
Query: 134 GGVVRTVTINSEGVSRK 150
G V TI EG+ K
Sbjct: 182 GEGVDIATITKEGIRMK 198
>sp|Q9YER0|PSB2_AERPE Proteasome subunit beta 2 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB2 PE=3
SV=2
Length = 219
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEG 71
AD+Q +SD +R + + + +V+ A+L+ + +++K F +IVGG+D
Sbjct: 75 ADAQILSDVLREEIRLYEMTNKVKPSVRFVASLLSNILFSSKFFPYIVQLIVGGYDTQP- 133
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
++Y + L G+I E + GSGS YG ++ ++E ++ EEA ++ A+ A+ RD
Sbjct: 134 -RLYTLDLFGSITEDKYTATGSGSPIAYGVLEERYREDLSVEEAIKVATTAIRSAVLRDA 192
Query: 132 ASGGVVRTVTINSEGVSRKFYPGDTL 157
ASG V I +G KF P ++L
Sbjct: 193 ASGDGADVVVIGPQGYEEKFIPYNSL 218
>sp|A0RXV1|PSB2_CENSY Proteasome subunit beta 2 OS=Cenarchaeum symbiosum (strain A)
GN=psmB2 PE=3 SV=2
Length = 210
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 6 LRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVG 64
L L AD+Q + D +RY H I+ P +K A L L+ + N+ + +++G
Sbjct: 55 LTLAGGVADAQNIVDVLRYHASLHRIRKQGPIPIKSLARLTSLIFHQNRGYPFMADILMG 114
Query: 65 GWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVS 124
G+D G +Y + + G++ E+ + GSGS YG ++ ++ +T +EA+ + ++AV
Sbjct: 115 GFDAV-GPALYNIDMFGSVEEKSYVTTGSGSPVAYGTLEEEYRADLTADEAKGVALRAVK 173
Query: 125 LAIARDGASGGVVRTVTINSEG 146
AI R+ +G + IN G
Sbjct: 174 AAITRNIGTGDGINVAVINGNG 195
>sp|Q8ZYF2|PSB1_PYRAE Proteasome subunit beta 1 OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=psmB1 PE=3 SV=1
Length = 202
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQ-TGMIVGGWDKYEG 71
AD Q+V ++ H++ I+ +P + N + L+ + ++ ++ I+GG D+ EG
Sbjct: 51 ADLQSVLSFLTLRAHEYKIEYKRPIPISALVNYMSLILFYSRPYIYIVHSIIGGVDEEEG 110
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
+Y V GT+ ++ + GSGS Y G + ++E MT E+A L +KAV AI D
Sbjct: 111 AVLYMVDWLGTVTKEKYIATGSGSPYAKGALEVGYREDMTLEDAVDLAIKAVKAAIRNDP 170
Query: 132 ASG-GVVRTVTINSEGVSRKF 151
SG G+ V EG R F
Sbjct: 171 GSGEGIDVVVITRKEGFKRVF 191
>sp|A3MS44|PSB1_PYRCJ Proteasome subunit beta 1 OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=psmB1 PE=3 SV=1
Length = 201
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQ-TGMIVGGWDKYEG 71
AD Q+V ++ ++ ++ +P ++ N V LL + ++ ++ IVGG D EG
Sbjct: 51 ADLQSVLSFLSLRAREYRVEHKRPIPIRALVNYVSLLLFYSRPYIYLVHSIVGGVDAEEG 110
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
+Y V GT+ ++ + GSGS Y G + A++E +T +EA +L ++AV AI D
Sbjct: 111 PVLYMVDWLGTVTKEKYIATGSGSPYAKGALEVAYREDLTIDEAVELAIRAVKAAIRNDP 170
Query: 132 ASGGVVRTVTIN-SEGVSRKF 151
SG + VTI S+G R F
Sbjct: 171 GSGEGIDVVTITKSDGFRRVF 191
>sp|A1RTI7|PSB2_PYRIL Proteasome subunit beta 2 OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=psmB2 PE=3 SV=1
Length = 200
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 1/140 (0%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQ-TGMIVGGWDKYEG 71
AD Q++ ++ ++ I+ +P ++ N V L+ + ++ ++ I+GG D+ EG
Sbjct: 51 ADLQSLLSFLTLRAREYKIEYKRPIPIRALVNYVSLILFYSRPYIYLVHSIIGGVDREEG 110
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
+Y V GT+ + + GSGS Y G + ++E M+ E+A L +++V AI D
Sbjct: 111 AVLYMVDWLGTVTRERYIATGSGSPYAKGALEVGYREDMSLEDAVDLAIRSVKAAIRNDP 170
Query: 132 ASGGVVRTVTINSEGVSRKF 151
SG + V I EG R F
Sbjct: 171 GSGEGIDVVVITKEGFRRVF 190
>sp|A3DN21|PSB1_STAMF Proteasome subunit beta 1 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=psmB1 PE=3 SV=1
Length = 213
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 14 DSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGG 72
D+Q + +R + +QLG+ V+ A ++ L+ Y+ K L T ++VGG+D+ +G
Sbjct: 68 DAQFIIRALRMEAENYELQLGREIRVRGLAKILSLILYSYKLAPLMTEVVVGGFDE-KGP 126
Query: 73 KIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGA 132
+IY + G++IE + GSG G ++ ++E + +EAE+L V A+ AI RD
Sbjct: 127 QIYVLDPVGSLIEDKYVALGSGGPIALGIIEKEYREDIDVDEAEKLAVSAIREAIERDAV 186
Query: 133 SGGVVRTVTINSEGVSRKFY 152
SG V + I EG S + Y
Sbjct: 187 SGDGVDVLRITEEGYSLREY 206
>sp|B8D683|PSB2_DESK1 Proteasome subunit beta 2 OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=psmB2 PE=3 SV=1
Length = 206
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLL--SYNNKNFLQTGMIVGGWDKYE 70
AD+Q + + RY ++ I++G P +K A+ + L+ Y + +++GG D
Sbjct: 57 ADAQYIVENARYIAREYEIEMGGPIPIKALASRISLILSVYLRYSPFIVQLLLGGRDS-T 115
Query: 71 GGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
G +Y + L G++ + + GSGS +G ++ ++ ++ EEA++L AVS AI RD
Sbjct: 116 GASLYYMDLYGSVTREKYMATGSGSPVAFGILEKNYRSDLSLEEAKKLAFNAVSSAIMRD 175
Query: 131 GASGGVVRTVTINSEGVSRKFYPGDTLPL 159
G SG V V I Y +T+PL
Sbjct: 176 GFSGEGVDIVVIGP-----GIYSEETIPL 199
>sp|O24361|PSB5_SPIOL Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1
Length = 272
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYE 70
AAD Q + H + + +V A+ L+ + YN + L G ++ GWD+
Sbjct: 104 AADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYNYRGMGLSVGTMIAGWDETG 163
Query: 71 GGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
G Y GG + F++G SGS Y YG D +K MT EEA +L +A+ A RD
Sbjct: 164 PGLYYVDSEGGRLKGMRFSVG-SGSPYAYGVLDNGYKYDMTVEEASELARRAIYHATYRD 222
Query: 131 GASGGVVRTVTINSEG 146
GASGGVV + +G
Sbjct: 223 GASGGVVSVYHVGPDG 238
>sp|O50110|PSB2_PYRHO Proteasome subunit beta 2 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 32 QLGQPATVKVAANLVRLLSYNNKNFLQTG-MIVGGWDKYEGGKIYGVPLGGTIIEQPFAI 90
Q G+ +VK A L+ + K F +VGG+D E K+Y V + G I E +A
Sbjct: 79 QSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYD--EKPKLYSVDMVGGITEDKYAT 136
Query: 91 GGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEG 146
GSG + Y D +K+ +T EE +L VKA++ AI RD SG + VTI EG
Sbjct: 137 AGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTITKEG 192
>sp|B1L6X8|PSB2_KORCO Proteasome subunit beta 2 OS=Korarchaeum cryptofilum (strain OPF8)
GN=psmB2 PE=3 SV=1
Length = 198
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Query: 14 DSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK--NFLQTGMIVGGWDKYEG 71
D Q + D ++Y + + ++ + AT A L+ +L Y + ++VGG D G
Sbjct: 54 DFQELVDVLKYNITMYELENEKAATPTNVAKLLSILLYQGRFSGIYYAELVVGGIDN-SG 112
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
KI+ + G ++E+ F+ GSG+ G ++ +KEGM+++EA +L +A+ AI+RD
Sbjct: 113 PKIFVLDPAGGLMEENFSAVGSGAQIATGILERFFKEGMSEKEAVELAERAMREAISRDA 172
Query: 132 ASGGVVRTVTINSEGVSRKFYP 153
SG + + I S+G +F P
Sbjct: 173 LSGDGIDLLIITSKGSRMEFIP 194
>sp|C7P6N4|PSB_METFA Proteasome subunit beta OS=Methanocaldococcus fervens (strain DSM
4213 / JCM 157852 / AG86) GN=psmB PE=3 SV=1
Length = 224
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 14 DSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGG 72
D+Q + + + ++ G+ + A L+ + ++N+ F T +I+GG+D EG
Sbjct: 57 DAQAIVRLLTAEAKLYKMRTGKNISPLACATLLSNILHSNRYFPFLTQLIIGGYDLLEGA 116
Query: 73 KIYGV-PLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
K++ + PLGG E+ F GSGS YG + + M EE +L +KA+ A+ RD
Sbjct: 117 KLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMPVEEGIKLALKALKSAMERDT 176
Query: 132 ASGGVVRTVTINSEGV 147
SG + I EGV
Sbjct: 177 YSGNGISLAVITKEGV 192
>sp|A3DN27|PSB2_STAMF Proteasome subunit beta 2 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=psmB2 PE=3 SV=1
Length = 208
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVK-VAANLVRLL-SYNNKNFLQTGMIVGGWDKYE 70
AD++ +++ R+ ++ ++LG+P V +A+NL +L +Y + +++GG+D
Sbjct: 59 ADAEIIAEQARFIARKYKLELGRPIKVSALASNLSIILNAYLRMSPYIVQLLLGGYDD-N 117
Query: 71 GGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
G ++ + L G++ E+ + GSGS +G ++ ++ ++ +EA++L KAVS A RD
Sbjct: 118 GPHLFYIDLFGSLSEEKYMATGSGSPTAFGVLEEEYRSDLSLDEAKELAFKAVSAATKRD 177
Query: 131 GASGGVVRTVTI 142
G SG V V I
Sbjct: 178 GFSGEGVDIVVI 189
>sp|B5IEE5|PSB_ACIB4 Proteasome subunit beta OS=Aciduliprofundum boonei (strain DSM
19572 / T469) GN=psmB PE=3 SV=1
Length = 210
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 2/133 (1%)
Query: 14 DSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGG 72
D Q + Y+R ++ + I+ V AA L+ + K F G++VGG+D +G
Sbjct: 58 DLQVLVRYMRAEINLYRIRRKMYMPVGAAATLLSNILNERKFFPYYVGLLVGGFDS-KGY 116
Query: 73 KIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGA 132
++ + G IE +A GSGS ++YG + WK+ ++ +E LV++ ++ A+ RD A
Sbjct: 117 HVFAIDAAGGAIEDKYASVGSGSLFVYGVLEDRWKDDLSLDEGINLVIRGINAAMRRDAA 176
Query: 133 SGGVVRTVTINSE 145
SG + TI +
Sbjct: 177 SGDGISVATITKD 189
>sp|B1L6S7|PSB1_KORCO Proteasome subunit beta 1 OS=Korarchaeum cryptofilum (strain OPF8)
GN=psmB1 PE=3 SV=1
Length = 206
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVK-VAANLVRLLSYNNKNFLQTGMIVGGWDKYEG 71
AD Q + + VR +++ +P +V+ +A L LL FL +IVGG D+ EG
Sbjct: 55 ADGQYLVNNVRTIADLYSLDTERPLSVRGIARILAFLLRRYRPYFLLAQLIVGGVDR-EG 113
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
++ V GT+ E+ + GSGS + + M +E A +LV+ +++ A++RD
Sbjct: 114 AHLFNVDPFGTLTEEDYLATGSGSPVAISVIESGYSPDMDRESALRLVISSMTAALSRDA 173
Query: 132 ASGGVVRTVTINSEGVS 148
A+G + V I+ GV+
Sbjct: 174 ATGDGIDVVVIDDRGVN 190
>sp|B1YA36|PSB1_PYRNV Proteasome subunit beta 1 OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=psmB1 PE=3 SV=1
Length = 201
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 2/141 (1%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQ-TGMIVGGWDKYEG 71
AD Q+V ++ ++ ++ +P ++ N V L+ + ++ ++ I+GG D EG
Sbjct: 51 ADLQSVLSFLTLRAREYKMEYKRPIPIRALVNYVSLILFYSRPYIYIVHSIIGGVDDEEG 110
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
+Y GT+ ++ + GSGS Y G + ++E M+ E+A L +KAV AI D
Sbjct: 111 AVLYMADWLGTVTKERYIATGSGSPYAKGALEVGYREDMSLEDAVDLAIKAVKAAIRNDP 170
Query: 132 ASG-GVVRTVTINSEGVSRKF 151
SG G+ V EG R F
Sbjct: 171 GSGEGIDVVVITKREGFRRVF 191
>sp|D3RX66|PSB_FERPA Proteasome subunit beta OS=Ferroglobus placidus (strain DSM 10642 /
AEDII12DO) GN=psmB PE=3 SV=1
Length = 210
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 3/134 (2%)
Query: 14 DSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGG 72
D+Q ++ ++ + +TI+ + TVK A LV L + + F +++GG DK G
Sbjct: 60 DAQFLARLIKVETNLYTIRKEEEPTVKAVATLVSNLLNSVRYFPYLVQLLIGGVDK-TGA 118
Query: 73 KIYGV-PLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
KIY + P+GG I E GSGS YG + +++ + +EA +L ++A+ A+ RD
Sbjct: 119 KIYSIDPIGGAIEEIDIVATGSGSPMAYGVLEDNYRKDINVDEAVELAIRAIYSAMKRDS 178
Query: 132 ASGGVVRTVTINSE 145
ASG + V I +
Sbjct: 179 ASGDGIDVVKITEK 192
>sp|Q9YES4|PSB1_AERPE Proteasome subunit beta 1 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB1 PE=3
SV=2
Length = 203
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 26 LHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTII 84
+ +++ G+PATV+ A + L Y+ K F IVGG D K+Y + G+II
Sbjct: 68 MRLASLETGKPATVRNVAKFLSSLLYSYKFFPFNVEAIVGGIDPGGEPKLYVLDPLGSII 127
Query: 85 EQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASG 134
E+ + G+G++ +G + +K GM+ EEA++ V+A+ ++ARD +G
Sbjct: 128 EEDYVAAGTGATTAFGLLEHVYKRGMSLEEAKKAAVEALRASMARDAGTG 177
>sp|C9REN7|PSB_METVM Proteasome subunit beta OS=Methanocaldococcus vulcanius (strain
ATCC 700851 / DSM 12094 / M7) GN=psmB PE=3 SV=1
Length = 223
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
Query: 14 DSQTVSDYVRYFLHQ---HTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKY 69
D+Q + VR + + + ++ G+ + + A L+ + ++++ F T +I+GG+D
Sbjct: 57 DAQAI---VRALIAEARLYKMRTGKNISPRACATLLSNILHSSRMFPFLTQIIIGGYDLT 113
Query: 70 EGGKIYGV-PLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIA 128
+G K++ + PLGG E+ F GSGS YG + + M+ EE +L +KA+ A+
Sbjct: 114 DGPKLFSLDPLGGMNEEKTFTSTGSGSPIAYGVLEAEYDRDMSIEEGLKLALKALKSAME 173
Query: 129 RDGASGGVVRTVTINSEGV 147
RD SG V I EGV
Sbjct: 174 RDTYSGNGVSVAVITKEGV 192
>sp|Q18GX3|PSB_HALWD Proteasome subunit beta OS=Haloquadratum walsbyi (strain DSM 16790)
GN=psmB PE=3 SV=1
Length = 243
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 7/99 (7%)
Query: 55 NFLQTG------MIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKE 108
NFL++G I+GG D +G IY + G+IIE+ + + GSGS Y G +Q + E
Sbjct: 134 NFLRSGGFFIVQPILGGVDD-DGPHIYSIDPAGSIIEEEYTVTGSGSQYALGVLEQQYNE 192
Query: 109 GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGV 147
++ EEA+ + +++ A+ RD ASG + + +GV
Sbjct: 193 DLSIEEAKTVAARSIESAVERDLASGNGINVCVVTEDGV 231
>sp|D4GYZ1|PSB_HALVD Proteasome subunit beta OS=Haloferax volcanii (strain ATCC 29605 /
DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM
B-1768 / DS2) GN=psmB PE=1 SV=1
Length = 243
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 14/149 (9%)
Query: 5 CLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGM--- 61
L + + +Q++ +R + + + G+ +++ + LV NFL++G
Sbjct: 91 ALTIAGSVSAAQSLISSLRAEVRLYEARRGEDMSMQALSTLV-------GNFLRSGGFYV 143
Query: 62 ---IVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQL 118
I+GG D+ G IY + G+I+E+ + + GSGS Y G +Q +++G++ EEA+ +
Sbjct: 144 VQPILGGVDET-GPHIYSIDPAGSILEEEYTVTGSGSQYALGVLEQEFEDGLSIEEAKGV 202
Query: 119 VVKAVSLAIARDGASGGVVRTVTINSEGV 147
KA+ A+ RD ASG + + +GV
Sbjct: 203 ATKAIRSAVERDLASGNGINIAVVTEDGV 231
>sp|O23717|PSB5A_ARATH Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1
PE=1 SV=1
Length = 274
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYE 70
AAD Q + H + + +V A+ L+ + Y+ + L G ++ GWD+
Sbjct: 106 AADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETG 165
Query: 71 GGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARD 130
G Y GG + F++G SGS Y YG D +K M+ EEA +L +++ A RD
Sbjct: 166 PGLYYVDNEGGRLKGDRFSVG-SGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRD 224
Query: 131 GASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEP 166
GASGGV + EG ++ GD + H P
Sbjct: 225 GASGGVASVYHVGPEGWTK--LSGDDVGELHYHYYP 258
>sp|Q54QR2|PSB7_DICDI Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7
PE=3 SV=1
Length = 266
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 12 AADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEG 71
AAD+++ + + L H + G+ V A +++ + + + + +I+GG D G
Sbjct: 83 AADTESATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQGHISAALILGGID-ING 141
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
++ + G+ + P+ GSGS F+ +K MTKEEA LV +A+S I D
Sbjct: 142 PSLHTIYPHGSTDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEEAIALVAEAISSGIFNDL 201
Query: 132 ASGGVVRTVTINSEGVS----------RKF------YPGDTLPLWHEELEP 166
SG V I GV+ RKF + T P+ +++ P
Sbjct: 202 GSGSNVDVTVIEPSGVTVLRNYQTPNERKFRNNPYIFKQGTTPVLKQDIAP 252
>sp|A4FYA5|PSB_METM5 Proteasome subunit beta OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=psmB PE=3 SV=1
Length = 219
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 14 DSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGG 72
D+Q++ + H ++ G T L+ + + N+++ L T +I+GG+D G
Sbjct: 65 DAQSLIRIISAEAKIHKMRTGNNMTPLSCTTLISNVLHGNRHYPLLTQLILGGYDLINGA 124
Query: 73 KIYGV-PLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
K++ + P+GG E F GSGS YG + ++ +T ++ + VKA+S A+ RD
Sbjct: 125 KLFSLDPVGGINEESSFTATGSGSPTAYGVLEAEYRSDVTIDKGLLVAVKALSSAMQRDA 184
Query: 132 ASGGVVRTVTINSEGVSRKFYP 153
SG + IN +GV K Y
Sbjct: 185 YSGNGISLAHINKDGV--KLYS 204
>sp|A4WH05|PSB1_PYRAR Proteasome subunit beta 1 OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=psmB1 PE=3 SV=1
Length = 202
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
Query: 13 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQT-GMIVGGWDKYEG 71
AD Q + ++ ++ Q +P ++ N + L+ + ++ ++ I+GG D+ EG
Sbjct: 51 ADLQNILSFLTVRAREYKTQFRRPIPIRALVNYMSLILFYSRPYVYVVHSIIGGVDEEEG 110
Query: 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131
+Y V GT+ ++ + GSGS Y G + ++ +T EEA L + A+ AI D
Sbjct: 111 AVMYMVDWLGTVTKEKYVATGSGSPYAKGVLEVGYRGDLTVEEAVDLAINAIKAAIRNDP 170
Query: 132 ASGGVVRTVTINS-EGVSRKF 151
SG + VTI +G R F
Sbjct: 171 GSGEGIDVVTITKRDGFKRIF 191
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,738,335
Number of Sequences: 539616
Number of extensions: 3038054
Number of successful extensions: 8876
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 8582
Number of HSP's gapped (non-prelim): 295
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)