Query 029964
Match_columns 184
No_of_seqs 114 out of 1100
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03759 proteasome_beta_type_3 100.0 3.6E-38 7.8E-43 248.5 20.0 150 2-152 43-194 (195)
2 cd03761 proteasome_beta_type_5 100.0 1.2E-37 2.6E-42 244.3 20.5 146 2-149 40-186 (188)
3 cd03758 proteasome_beta_type_2 100.0 9.3E-38 2E-42 245.9 19.9 147 2-149 41-190 (193)
4 cd03757 proteasome_beta_type_1 100.0 2.9E-37 6.3E-42 246.3 20.9 152 2-154 48-209 (212)
5 cd03762 proteasome_beta_type_6 100.0 4E-37 8.6E-42 241.0 20.3 147 2-149 40-186 (188)
6 cd03765 proteasome_beta_bacter 100.0 6.3E-37 1.4E-41 247.5 21.3 146 2-149 43-204 (236)
7 PTZ00488 Proteasome subunit be 100.0 3.6E-37 7.8E-42 250.8 19.0 164 2-169 79-243 (247)
8 COG0638 PRE1 20S proteasome, a 100.0 4.3E-37 9.3E-42 249.0 18.6 161 2-166 70-234 (236)
9 cd03760 proteasome_beta_type_4 100.0 2.7E-36 5.9E-41 238.1 19.6 147 2-149 42-194 (197)
10 cd03763 proteasome_beta_type_7 100.0 6.3E-36 1.4E-40 234.6 20.5 146 2-149 40-185 (189)
11 TIGR03634 arc_protsome_B prote 100.0 1.7E-35 3.6E-40 231.2 20.3 144 2-147 41-185 (185)
12 TIGR03690 20S_bact_beta protea 100.0 7.7E-36 1.7E-40 239.3 18.4 161 2-165 42-215 (219)
13 cd03764 proteasome_beta_archea 100.0 2.8E-35 6E-40 230.6 20.7 146 2-149 40-186 (188)
14 PTZ00246 proteasome subunit al 100.0 2.1E-35 4.6E-40 241.4 18.6 164 2-166 71-243 (253)
15 cd03750 proteasome_alpha_type_ 100.0 1.8E-35 4E-40 238.2 17.7 155 2-161 66-226 (227)
16 cd01912 proteasome_beta protea 100.0 7.3E-35 1.6E-39 228.0 20.6 147 2-149 40-187 (189)
17 PRK03996 proteasome subunit al 100.0 2.7E-35 5.8E-40 239.1 18.0 160 2-164 75-239 (241)
18 TIGR03633 arc_protsome_A prote 100.0 2E-34 4.4E-39 231.6 19.8 152 2-156 68-224 (224)
19 KOG0176 20S proteasome, regula 100.0 9.5E-35 2E-39 222.9 13.9 159 1-163 72-240 (241)
20 TIGR03691 20S_bact_alpha prote 100.0 1.4E-33 3E-38 227.4 17.6 159 2-161 59-228 (228)
21 cd03752 proteasome_alpha_type_ 100.0 2.1E-33 4.5E-38 224.2 18.4 140 2-142 69-213 (213)
22 cd03749 proteasome_alpha_type_ 100.0 2.4E-33 5.2E-38 223.6 18.2 140 2-143 64-211 (211)
23 cd03755 proteasome_alpha_type_ 100.0 3E-33 6.5E-38 222.4 17.8 137 2-142 66-207 (207)
24 cd03751 proteasome_alpha_type_ 100.0 4.1E-33 8.9E-38 222.5 18.0 139 2-142 69-212 (212)
25 cd03754 proteasome_alpha_type_ 100.0 9.5E-33 2.1E-37 220.8 17.6 139 2-142 68-215 (215)
26 KOG0174 20S proteasome, regula 100.0 7E-33 1.5E-37 212.0 15.3 165 2-167 59-223 (224)
27 cd01906 proteasome_protease_Hs 100.0 3.9E-32 8.5E-37 210.8 18.5 140 2-142 40-182 (182)
28 cd03756 proteasome_alpha_arche 100.0 3.8E-32 8.3E-37 216.6 18.5 139 2-143 67-210 (211)
29 cd01911 proteasome_alpha prote 100.0 2.7E-32 5.9E-37 217.1 17.5 139 2-142 66-209 (209)
30 cd03753 proteasome_alpha_type_ 100.0 6.8E-32 1.5E-36 215.4 17.9 138 2-142 66-213 (213)
31 PF00227 Proteasome: Proteasom 100.0 1.8E-31 4E-36 208.3 18.2 140 2-142 45-190 (190)
32 KOG0178 20S proteasome, regula 100.0 2.5E-31 5.4E-36 205.8 14.8 164 2-166 71-242 (249)
33 KOG0181 20S proteasome, regula 100.0 6.4E-32 1.4E-36 206.9 10.9 159 1-164 70-233 (233)
34 KOG0183 20S proteasome, regula 100.0 7.8E-32 1.7E-36 209.1 10.7 161 2-167 69-236 (249)
35 KOG0182 20S proteasome, regula 100.0 9.5E-31 2.1E-35 202.7 14.3 164 1-166 74-244 (246)
36 KOG0175 20S proteasome, regula 100.0 1.8E-30 3.8E-35 206.2 13.8 163 6-171 114-281 (285)
37 KOG0179 20S proteasome, regula 100.0 2.5E-29 5.4E-34 194.5 16.3 154 2-156 69-234 (235)
38 KOG0177 20S proteasome, regula 100.0 1.3E-29 2.8E-34 193.3 13.3 147 2-149 41-190 (200)
39 KOG0863 20S proteasome, regula 100.0 2.6E-28 5.7E-33 191.2 14.3 161 2-165 69-237 (264)
40 KOG0173 20S proteasome, regula 100.0 3.2E-27 6.9E-32 187.2 14.4 146 2-149 77-222 (271)
41 KOG0184 20S proteasome, regula 99.9 9.2E-27 2E-31 181.7 12.1 151 1-154 72-229 (254)
42 KOG0180 20S proteasome, regula 99.9 1E-25 2.2E-30 169.8 14.1 153 2-155 48-202 (204)
43 KOG0185 20S proteasome, regula 99.9 7.1E-26 1.5E-30 177.9 11.6 165 1-168 80-251 (256)
44 PRK05456 ATP-dependent proteas 99.9 2.2E-22 4.8E-27 155.6 15.1 126 2-141 42-171 (172)
45 cd01901 Ntn_hydrolase The Ntn 99.9 4.4E-22 9.6E-27 149.7 16.3 121 2-124 40-163 (164)
46 cd01913 protease_HslV Protease 99.9 2.8E-22 6.1E-27 154.4 15.4 126 2-141 41-170 (171)
47 TIGR03692 ATP_dep_HslV ATP-dep 99.9 1.4E-21 3.1E-26 150.5 14.7 126 2-141 41-170 (171)
48 COG3484 Predicted proteasome-t 98.9 4.3E-08 9.4E-13 76.6 12.4 160 3-164 45-221 (255)
49 COG5405 HslV ATP-dependent pro 98.3 1.3E-05 2.8E-10 60.7 9.9 128 2-143 45-176 (178)
50 PF09894 DUF2121: Uncharacteri 90.6 1.1 2.3E-05 35.3 6.3 133 12-145 16-180 (194)
51 KOG3361 Iron binding protein i 89.6 0.64 1.4E-05 34.4 4.1 43 75-117 71-113 (157)
52 COG4079 Uncharacterized protei 74.6 11 0.00024 30.9 6.0 51 95-145 131-181 (293)
53 COG4245 TerY Uncharacterized p 70.9 8.2 0.00018 30.5 4.3 47 114-160 22-68 (207)
54 PRK09732 hypothetical protein; 57.9 55 0.0012 24.2 6.5 40 108-151 5-44 (134)
55 COG3193 GlcG Uncharacterized p 55.2 64 0.0014 24.2 6.4 39 107-149 5-43 (141)
56 PF03928 DUF336: Domain of unk 51.9 23 0.0005 25.7 3.7 37 109-149 2-38 (132)
57 PF05113 DUF693: Protein of un 49.3 51 0.0011 27.6 5.5 57 60-119 98-157 (314)
58 PF07499 RuvA_C: RuvA, C-termi 45.9 13 0.00029 22.0 1.3 31 91-121 13-44 (47)
59 COG1754 Uncharacterized C-term 41.8 27 0.00058 29.3 2.8 72 63-139 77-151 (298)
60 COG3140 Uncharacterized protei 41.1 59 0.0013 20.3 3.6 36 96-131 14-49 (60)
61 cd04513 Glycosylasparaginase G 37.8 1.5E+02 0.0032 24.7 6.6 59 88-149 187-249 (263)
62 PF14830 Haemocyan_bet_s: Haem 37.4 90 0.002 22.1 4.6 87 57-157 7-94 (103)
63 PF04539 Sigma70_r3: Sigma-70 36.8 81 0.0018 20.2 4.2 30 19-48 3-32 (78)
64 cd04512 Ntn_Asparaginase_2_lik 35.8 2E+02 0.0044 23.6 7.1 56 87-148 175-234 (248)
65 PF08269 Cache_2: Cache domain 34.3 98 0.0021 20.7 4.4 56 109-170 34-92 (95)
66 PF10632 He_PIG_assoc: He_PIG 33.3 47 0.001 17.9 2.0 23 59-82 4-26 (29)
67 cd01784 rasfadin_RA Ubiquitin- 33.1 85 0.0019 21.5 3.8 52 107-164 20-71 (87)
68 PF04485 NblA: Phycobilisome d 33.0 70 0.0015 19.8 3.1 23 108-130 20-42 (53)
69 cd04702 ASRGL1_like ASRGL1_lik 31.4 2E+02 0.0044 23.8 6.5 56 88-149 179-238 (261)
70 COG0822 IscU NifU homolog invo 29.7 2.4E+02 0.0053 21.1 6.5 55 73-128 44-99 (150)
71 cd06396 PB1_NBR1 The PB1 domai 28.1 54 0.0012 22.2 2.1 56 109-173 21-76 (81)
72 PF00538 Linker_histone: linke 28.0 1E+02 0.0022 20.1 3.5 38 92-129 21-58 (77)
73 PF01726 LexA_DNA_bind: LexA D 27.1 1.6E+02 0.0036 18.6 4.2 22 26-47 15-36 (65)
74 COG4990 Uncharacterized protei 25.3 74 0.0016 25.0 2.7 34 61-107 151-184 (195)
75 PF01592 NifU_N: NifU-like N t 25.2 2.3E+02 0.0051 20.2 5.3 63 66-128 30-96 (126)
76 PF00788 RA: Ras association ( 24.4 2.1E+02 0.0045 18.6 5.2 53 108-166 25-78 (93)
77 PRK02487 hypothetical protein; 23.5 2.4E+02 0.0052 21.2 5.3 37 107-148 20-56 (163)
78 PF14804 Jag_N: Jag N-terminus 23.5 97 0.0021 18.9 2.5 29 109-144 4-32 (52)
79 COG2096 cob(I)alamin adenosylt 23.4 1.9E+02 0.004 22.7 4.6 38 15-52 125-162 (184)
80 cd01782 AF6_RA_repeat1 Ubiquit 23.4 1.8E+02 0.004 20.8 4.2 60 108-170 44-107 (112)
81 PF03701 UPF0181: Uncharacteri 23.2 1.9E+02 0.0041 17.7 4.1 33 97-129 15-47 (51)
82 PRK11508 sulfur transfer prote 23.1 2.3E+02 0.0049 20.2 4.7 34 11-48 39-72 (109)
83 smart00413 ETS erythroblast tr 22.9 41 0.00089 23.1 0.8 29 139-167 21-49 (87)
84 TIGR00636 PduO_Nterm ATP:cob(I 22.8 1.8E+02 0.0039 22.4 4.5 38 15-52 117-154 (171)
85 PF01923 Cob_adeno_trans: Coba 22.3 1.8E+02 0.0038 22.0 4.3 39 14-52 119-157 (163)
86 TIGR03342 dsrC_tusE_dsvC sulfu 22.2 2.7E+02 0.0058 19.8 4.9 35 11-49 38-72 (108)
87 COG4537 ComGC Competence prote 21.9 1.8E+02 0.004 20.5 3.9 28 15-42 49-77 (107)
88 KOG2449 Methylmalonate semiald 21.4 3.2E+02 0.0069 20.6 5.3 75 11-85 4-82 (157)
89 PF11773 PulG: Type II secreto 21.3 2.3E+02 0.0049 19.2 4.1 39 110-150 34-72 (82)
90 PRK14065 exodeoxyribonuclease 21.2 2.6E+02 0.0057 19.0 4.4 31 96-126 32-62 (86)
91 PF00178 Ets: Ets-domain; Int 21.2 41 0.00089 22.8 0.6 29 139-167 21-49 (85)
92 KOG1930 Focal adhesion protein 20.7 62 0.0014 28.7 1.7 16 106-121 215-230 (483)
93 PF11216 DUF3012: Protein of u 20.7 1.7E+02 0.0036 16.2 2.8 30 94-123 2-31 (32)
94 COG5469 Predicted metal-bindin 20.5 30 0.00065 25.8 -0.3 33 12-44 38-71 (143)
95 PF15286 Bcl-2_3: Apoptosis re 20.3 1.7E+02 0.0036 21.0 3.5 42 9-50 25-68 (126)
96 PF06858 NOG1: Nucleolar GTP-b 20.0 60 0.0013 20.5 1.1 13 71-83 15-27 (58)
No 1
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.6e-38 Score=248.55 Aligned_cols=150 Identities=21% Similarity=0.260 Sum_probs=143.4
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-CceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r-~p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
||+|++ ||+.||++.+++++|.+++.|+++++++++++.+|+++++++|.+| +||+|++||||||++++|+||.+||+
T Consensus 43 ~i~~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~ 121 (195)
T cd03759 43 RLYIGL-AGLATDVQTLAQKLRFRVNLYRLREEREIKPKTFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLI 121 (195)
T ss_pred CEEEEc-cchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCC
Confidence 799999 9999999999999999999999999999999999999999998764 69999999999998778999999999
Q ss_pred CceeeeC-eEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEee
Q 029964 81 GTIIEQP-FAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFY 152 (184)
Q Consensus 81 G~~~~~~-~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~ 152 (184)
|++..++ ++|+|+|+++++++||+.|+++||.+||++++++||+.+.+||..++++++|++|+++|+.++.+
T Consensus 122 G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 194 (195)
T cd03759 122 GCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKDKVTTRTL 194 (195)
T ss_pred CcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEEec
Confidence 9998887 99999999999999999999999999999999999999999999999999999999999987654
No 2
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-37 Score=244.28 Aligned_cols=146 Identities=28% Similarity=0.363 Sum_probs=141.8
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-CceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r-~p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
|++|++ ||+.+|++.+++++|.+++.|++++|+++|++.+|+++++++|.+| .||+|++||||||+ .||+||++||+
T Consensus 40 ~i~~~~-sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la~~ls~~l~~~~~~~~~v~~li~G~D~-~g~~L~~~dp~ 117 (188)
T cd03761 40 YLLGTM-AGGAADCQYWERVLGRECRLYELRNKERISVAAASKLLSNMLYQYKGMGLSMGTMICGWDK-TGPGLYYVDSD 117 (188)
T ss_pred cEEEEe-CccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEEcCC
Confidence 799999 9999999999999999999999999999999999999999999885 58999999999997 49999999999
Q ss_pred CceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 81 GTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 81 G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
|++.+++++|+|+|+++++++||+.|+++||.+||++++++||+.+.+||..++++++|++|+++|+++
T Consensus 118 G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~ 186 (188)
T cd03761 118 GTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRK 186 (188)
T ss_pred ceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999875
No 3
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.3e-38 Score=245.88 Aligned_cols=147 Identities=22% Similarity=0.309 Sum_probs=141.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC---CCceeEEEEEEEEeCCCCcEEEEEC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN---KNFLQTGMIVGGWDKYEGGKIYGVP 78 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~---r~p~~vs~iiaG~D~~~gp~Ly~id 78 (184)
||+|++ ||+.||+|.+.+++|.+++.|+++++++++++.+++++++++|.+ +|||+|++|++|||+++||+||++|
T Consensus 41 ~i~~~~-sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d 119 (193)
T cd03758 41 HKLMAC-SGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYID 119 (193)
T ss_pred CeEEEE-ccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEEC
Confidence 799999 999999999999999999999999999999999999999998753 3699999999999976699999999
Q ss_pred CCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 79 LGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 79 ~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
|+|++++++++|+|+|+++++++||+.|+++||.+||++++.+|++.+.+||+.++++++|++|+++|+++
T Consensus 120 ~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~ 190 (193)
T cd03758 120 YLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDGIRD 190 (193)
T ss_pred CCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCCeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
No 4
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-37 Score=246.35 Aligned_cols=152 Identities=20% Similarity=0.235 Sum_probs=144.7
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-CceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r-~p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
||+|++ ||..+|++.+++++|.+++.|++++|++++++.+|+++++++|.+| +||+|++||||||++++|+||++||+
T Consensus 48 ~i~~~~-sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~ 126 (212)
T cd03757 48 KCVLGS-SGFQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPV 126 (212)
T ss_pred CEEEEc-cchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCc
Confidence 799999 9999999999999999999999999999999999999999999865 59999999999997778999999999
Q ss_pred CceeeeCeEEEecChhhHHHHhhhhhc---------CCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEe
Q 029964 81 GTIIEQPFAIGGSGSSYLYGFFDQAWK---------EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKF 151 (184)
Q Consensus 81 G~~~~~~~~a~G~gs~~a~~~Le~~~~---------~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~ 151 (184)
|++.+++++|+|+|+++++++||+.|+ ++||++||++++++||+.+.+||+.++++++|++|+++|++++.
T Consensus 127 G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~~ 206 (212)
T cd03757 127 GSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEET 206 (212)
T ss_pred cCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEEe
Confidence 999999999999999999999999985 89999999999999999999999999999999999999998766
Q ss_pred ecC
Q 029964 152 YPG 154 (184)
Q Consensus 152 ~~~ 154 (184)
++.
T Consensus 207 ~~~ 209 (212)
T cd03757 207 FPL 209 (212)
T ss_pred ecc
Confidence 543
No 5
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4e-37 Score=241.05 Aligned_cols=147 Identities=54% Similarity=0.991 Sum_probs=143.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCCcEEEEECCCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGG 81 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r~p~~vs~iiaG~D~~~gp~Ly~id~~G 81 (184)
||+|++ ||+.+|++.+.+++|.+++.|+.+++++++++.+|+++++++|.+|+||+|++||||+|++.||+||++||+|
T Consensus 40 ~i~~~~-sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~~G 118 (188)
T cd03762 40 RIYCCR-SGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAASLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGG 118 (188)
T ss_pred CEEEEe-cccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHhccccceeeEEEEEEcCCCCcEEEEECCCC
Confidence 799999 9999999999999999999999999999999999999999999999999999999999975689999999999
Q ss_pred ceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 82 TIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 82 ~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
++.+++++++|+|+++++++||+.|+++||++||++++++||+.+.+||+.++++++|++|+++|+++
T Consensus 119 ~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 119 MLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred CEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999975
No 6
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.3e-37 Score=247.47 Aligned_cols=146 Identities=18% Similarity=0.142 Sum_probs=137.3
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHc----C-------CCceeEEEEEEEEeCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQ-PATVKVAANLVRLLSYN----N-------KNFLQTGMIVGGWDKY 69 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~-~i~~~~la~~is~~~~~----~-------r~p~~vs~iiaG~D~~ 69 (184)
||+||+ ||..||++.+++++|.+++.|++++|+ ++|++.+|+++++++++ + +|||+|++||||||++
T Consensus 43 ~I~~~~-sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~ 121 (236)
T cd03765 43 VIVLLT-AGNLATTQAVISLLQRDLEDPEETNLLNAPTMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKG 121 (236)
T ss_pred EEEEEc-CCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECC
Confidence 799999 999999999999999999999999999 89999999999998654 1 3799999999999965
Q ss_pred CCcEEEEECCCCceeee----CeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCC
Q 029964 70 EGGKIYGVPLGGTIIEQ----PFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSE 145 (184)
Q Consensus 70 ~gp~Ly~id~~G~~~~~----~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkd 145 (184)
.||+||++||+|++.++ +|.|+|. +++++++||++|+++||++||++++++||..++.||..++++++|++|+++
T Consensus 122 ~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~ 200 (236)
T cd03765 122 EEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERD 200 (236)
T ss_pred CCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECC
Confidence 68999999999999998 5689996 799999999999999999999999999999999999999999999999999
Q ss_pred CcEE
Q 029964 146 GVSR 149 (184)
Q Consensus 146 g~~~ 149 (184)
|.+.
T Consensus 201 G~~~ 204 (236)
T cd03765 201 SLQV 204 (236)
T ss_pred Ceee
Confidence 9875
No 7
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=3.6e-37 Score=250.84 Aligned_cols=164 Identities=25% Similarity=0.344 Sum_probs=153.9
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCC-ceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKN-FLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r~-p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
||+|++ ||+.+|++.+++++|.+++.|++++|++++++.+|+++++++|.+|. |+.+++||||||++ ||+||++||+
T Consensus 79 ~i~~~~-sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~-gp~Ly~vDp~ 156 (247)
T PTZ00488 79 TLLGTM-AGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNYKGMGLSMGTMICGWDKK-GPGLFYVDND 156 (247)
T ss_pred CEEEEe-CcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCC-CCEEEEEcCC
Confidence 799999 99999999999999999999999999999999999999999998853 56677899999974 8999999999
Q ss_pred CceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCchh
Q 029964 81 GTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLW 160 (184)
Q Consensus 81 G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~~ 160 (184)
|++.+++++|+|+|+.+++++||+.|+++||.+||++++++||..+.+||..++++++|++|+++|++. ++++|+.+|
T Consensus 157 Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~--l~~~ei~~~ 234 (247)
T PTZ00488 157 GTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKK--ISADDCFDL 234 (247)
T ss_pred cceeecCCEEEccCHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEE--CCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999754 999999999
Q ss_pred hhhcCChhh
Q 029964 161 HEELEPQNS 169 (184)
Q Consensus 161 ~~~~~~~~~ 169 (184)
++++...-+
T Consensus 235 l~~~~~~~~ 243 (247)
T PTZ00488 235 HQKYAAEKE 243 (247)
T ss_pred HHHHhhhcc
Confidence 988765443
No 8
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-37 Score=248.98 Aligned_cols=161 Identities=29% Similarity=0.437 Sum_probs=151.1
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC---CceeEEEEEEEEeCCCCcEEEEEC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK---NFLQTGMIVGGWDKYEGGKIYGVP 78 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r---~p~~vs~iiaG~D~~~gp~Ly~id 78 (184)
||+|++ ||+.+|+|.+++++|.+++.|++.+|++++++.+++++|+++|.++ |||+|++||||+|+ ++|+||.+|
T Consensus 70 ~i~~~~-sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~D 147 (236)
T COG0638 70 HIGMAI-AGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTD 147 (236)
T ss_pred CEEEEe-ccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEEC
Confidence 899999 9999999999999999999999999999999999999999999884 79999999999999 799999999
Q ss_pred CCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCC-CcEEEeecCCCC
Q 029964 79 LGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSE-GVSRKFYPGDTL 157 (184)
Q Consensus 79 ~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkd-g~~~~~~~~~~~ 157 (184)
|+|++.+++++|+|+|+++++++||+.|+++|+.+||++++++||..+.+||..++++++|++|+++ |.+ .++.+++
T Consensus 148 p~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~--~~~~~~~ 225 (236)
T COG0638 148 PSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFR--KLDGEEI 225 (236)
T ss_pred CCCceeecCEEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeE--EcCHHHH
Confidence 9999999999999999999999999999999999999999999999999999988989999999995 544 3788888
Q ss_pred chhhhhcCC
Q 029964 158 PLWHEELEP 166 (184)
Q Consensus 158 ~~~~~~~~~ 166 (184)
..+++.+..
T Consensus 226 ~~~~~~~~~ 234 (236)
T COG0638 226 KKLLDDLSE 234 (236)
T ss_pred HHHHHHHhh
Confidence 877766543
No 9
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-36 Score=238.14 Aligned_cols=147 Identities=24% Similarity=0.265 Sum_probs=139.7
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHHHHHcC---CCceeEEEEEEEEeCCCCcEEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLH-QHTIQLGQPATVKVAANLVRLLSYNN---KNFLQTGMIVGGWDKYEGGKIYGV 77 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~-~~~~~~~~~i~~~~la~~is~~~~~~---r~p~~vs~iiaG~D~~~gp~Ly~i 77 (184)
||+|++ +|+.+|++.+++++|.+++ .|+++++++++++.+|+++++++|++ .|||+|++|+||||+++||+||++
T Consensus 42 ~i~~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~ 120 (197)
T cd03760 42 NTLLGA-SGDYADFQYLKRLLDQLVIDDECLDDGHSLSPKEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYV 120 (197)
T ss_pred cEEEEe-CcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEE
Confidence 799999 9999999999999999987 56688999999999999999999875 379999999999997569999999
Q ss_pred CCCCceeeeCeEEEecChhhHHHHhhhhhcC--CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 78 PLGGTIIEQPFAIGGSGSSYLYGFFDQAWKE--GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 78 d~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~--~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||+.+.+||..++++++|++|+++|+++
T Consensus 121 D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~ 194 (197)
T cd03760 121 DLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVVTKEGVEI 194 (197)
T ss_pred cCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEe
Confidence 9999999999999999999999999999999 99999999999999999999999999999999999999864
No 10
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.3e-36 Score=234.58 Aligned_cols=146 Identities=28% Similarity=0.433 Sum_probs=142.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCCcEEEEECCCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGG 81 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r~p~~vs~iiaG~D~~~gp~Ly~id~~G 81 (184)
||+|++ ||..+|++.+.+++|.+++.|+++++++++++.+|+++++.+|.++.||+|++|+||||+. ||+||.+||+|
T Consensus 40 ~i~~~~-sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~~p~~v~~ivaG~d~~-g~~ly~~d~~G 117 (189)
T cd03763 40 NIYCCG-AGTAADTEAVTNMISSNLELHRLNTGRKPRVVTALTMLKQHLFRYQGHIGAALVLGGVDYT-GPHLYSIYPHG 117 (189)
T ss_pred CEEEEc-CccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCccceeEEEEeEcCC-CCEEEEECCCC
Confidence 799999 9999999999999999999999999999999999999999999888899999999999975 89999999999
Q ss_pred ceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 82 TIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 82 ~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
++.+++++|+|+|+++++++||++|+++||++||++++++||+.+.+||+.++++++|++|+++|++.
T Consensus 118 ~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~ 185 (189)
T cd03763 118 STDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEY 185 (189)
T ss_pred CEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999874
No 11
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.7e-35 Score=231.25 Aligned_cols=144 Identities=31% Similarity=0.467 Sum_probs=139.7
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-CceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r-~p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
||+|++ +|..+|++.+.+++|.+++.|+..++++++++.+|+++++++|.++ |||+|++|+||+|++ ||+||.+||+
T Consensus 41 ~i~~~~-sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~rP~~v~~ivaG~d~~-g~~Ly~~d~~ 118 (185)
T TIGR03634 41 YIAMTI-AGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALATLLSNILNSNRFFPFIVQLLVGGVDEE-GPHLYSLDPA 118 (185)
T ss_pred CEEEEc-CchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEEeCC-CCEEEEECCC
Confidence 799999 9999999999999999999999999999999999999999999874 799999999999985 8999999999
Q ss_pred CceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCc
Q 029964 81 GTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGV 147 (184)
Q Consensus 81 G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~ 147 (184)
|++.+++++++|+|+++++++||+.|+++||++||++++++||+.+.+||..++++++|++|+++|+
T Consensus 119 G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 119 GGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred CCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999985
No 12
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=7.7e-36 Score=239.27 Aligned_cols=161 Identities=21% Similarity=0.251 Sum_probs=148.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC----CCceeEEEEEEEEeCC-CCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN----KNFLQTGMIVGGWDKY-EGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~----r~p~~vs~iiaG~D~~-~gp~Ly~ 76 (184)
|++|++ ||+.+|++.+++++|.+++.|+++++++++++.+|+++++++|.+ .|||+|++||||||+. ++|+||+
T Consensus 42 ~i~~~~-sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~ 120 (219)
T TIGR03690 42 YSAVGI-AGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGKANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFS 120 (219)
T ss_pred cEEEEe-cccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEE
Confidence 799999 999999999999999999999999999999999999999999754 5799999999999964 6899999
Q ss_pred ECCCCc-eeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCe-------EEEEEEeCCCcE
Q 029964 77 VPLGGT-IIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGV-------VRTVTINSEGVS 148 (184)
Q Consensus 77 id~~G~-~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~-------iev~iitkdg~~ 148 (184)
+||+|+ +..++++|+|+|+++++++||+.|+++||.+||++++++||..+.+||..+++. ++|++|+++|++
T Consensus 121 ~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~ 200 (219)
T TIGR03690 121 YDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGAR 200 (219)
T ss_pred EeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceE
Confidence 999995 677799999999999999999999999999999999999999999999876764 399999999965
Q ss_pred EEeecCCCCchhhhhcC
Q 029964 149 RKFYPGDTLPLWHEELE 165 (184)
Q Consensus 149 ~~~~~~~~~~~~~~~~~ 165 (184)
+ ++++|+++++..+.
T Consensus 201 ~--l~~~ei~~~~~~~~ 215 (219)
T TIGR03690 201 R--VPESELEELARAIV 215 (219)
T ss_pred E--cCHHHHHHHHHHHH
Confidence 4 99999999987654
No 13
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-35 Score=230.60 Aligned_cols=146 Identities=31% Similarity=0.493 Sum_probs=141.1
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-CceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r-~p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
||+|++ +|+.+|++.+.+++|.+++.|++.++++++++.+++++++.+|.++ |||+|++|+||+|+ ++|+||.+||+
T Consensus 40 ~i~~~~-sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~ 117 (188)
T cd03764 40 KIAMTI-AGSVGDAQSLVRILKAEARLYELRRGRPMSIKALATLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPL 117 (188)
T ss_pred CEEEEc-CccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCC
Confidence 799999 9999999999999999999999999999999999999999999874 79999999999998 68999999999
Q ss_pred CceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 81 GTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 81 G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
|++.+++++|+|+|+++++++||+.|+++|+.+||++++++||+.+.+||+.++++++|++|+++|++.
T Consensus 118 G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~ 186 (188)
T cd03764 118 GSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKE 186 (188)
T ss_pred CCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999653
No 14
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.1e-35 Score=241.36 Aligned_cols=164 Identities=15% Similarity=0.209 Sum_probs=152.6
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+||+ +|+.+|++.+++.+|.+++.|++++++++++..+++.+++.++.+ .|||+|++||||||+++||+||.
T Consensus 71 ~i~~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~ 149 (253)
T PTZ00246 71 HIFCAV-AGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYH 149 (253)
T ss_pred CEEEEE-EEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEE
Confidence 799999 999999999999999999999999999999999999999987653 47999999999999766999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCC----cEEEee
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEG----VSRKFY 152 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg----~~~~~~ 152 (184)
+||+|++.+++++|+|+|+++++++||+.|+++|+++||++++++||..+..+|..++++++|++|+++| ..++.+
T Consensus 150 ~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l 229 (253)
T PTZ00246 150 TDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKML 229 (253)
T ss_pred ECCCCCEecceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEEC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 224569
Q ss_pred cCCCCchhhhhcCC
Q 029964 153 PGDTLPLWHEELEP 166 (184)
Q Consensus 153 ~~~~~~~~~~~~~~ 166 (184)
+++||+++++++..
T Consensus 230 ~~~ei~~~l~~~~~ 243 (253)
T PTZ00246 230 SEKEIAELLKKVTQ 243 (253)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988743
No 15
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-35 Score=238.18 Aligned_cols=155 Identities=14% Similarity=0.186 Sum_probs=143.9
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..+|++.+++++|.+++.|++++|++++++.+|+.+++++|.+ .|||+|++||+|||+. ||+||.
T Consensus 66 ~i~~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~-g~~Ly~ 143 (227)
T cd03750 66 HIGMVY-SGMGPDFRVLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPYLYQ 143 (227)
T ss_pred CEEEEE-eEcHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC-CCEEEE
Confidence 899999 999999999999999999999999999999999999999998643 4799999999999975 999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCC-CcEEEeecCC
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSE-GVSRKFYPGD 155 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkd-g~~~~~~~~~ 155 (184)
+||+|++.+++++|+|+|+++++++||++|+++||++||++++++||..+.+||. ++.+++|++|+++ |.+ .++++
T Consensus 144 ~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~--~~~~~ 220 (227)
T cd03750 144 VDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFR--LLTPA 220 (227)
T ss_pred ECCCCCEEeeeEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEE--ECCHH
Confidence 9999999999999999999999999999999999999999999999999999876 6889999999996 443 47778
Q ss_pred CCchhh
Q 029964 156 TLPLWH 161 (184)
Q Consensus 156 ~~~~~~ 161 (184)
|+.+++
T Consensus 221 ei~~~~ 226 (227)
T cd03750 221 EIKDYL 226 (227)
T ss_pred HHHHHh
Confidence 877665
No 16
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.3e-35 Score=227.99 Aligned_cols=147 Identities=39% Similarity=0.521 Sum_probs=142.3
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCC-ceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKN-FLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r~-p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
||+|++ ||+.+|++.+.+++|.+++.|++.++++++++.+++++++.+|.+++ ||+|++||||+|++++|+||.+||+
T Consensus 40 ~i~~~~-sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~ 118 (189)
T cd01912 40 NILLGT-AGSAADTQALTRLLKRNLRLYELRNGRELSVKAAANLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPL 118 (189)
T ss_pred CEEEEc-cccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCC
Confidence 799999 99999999999999999999999999999999999999999998864 9999999999998669999999999
Q ss_pred CceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 81 GTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 81 G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
|++.+++++|+|.++++++++||+.|+++||.+||++++++||+.+.+||+.++++++|++|+++|++.
T Consensus 119 G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~ 187 (189)
T cd01912 119 GSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEE 187 (189)
T ss_pred CCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999864
No 17
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.7e-35 Score=239.13 Aligned_cols=160 Identities=19% Similarity=0.246 Sum_probs=150.1
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+++++.+|.+ +|||+|++||||+|+ .||+||.
T Consensus 75 ~i~~~~-sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~ 152 (241)
T PRK03996 75 HIGAAS-AGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFE 152 (241)
T ss_pred CEEEEE-cccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEE
Confidence 799999 999999999999999999999999999999999999999998654 479999999999998 4899999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCC
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDT 156 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~ 156 (184)
+||+|++.+++++|+|+|++.++++||+.|+++|+++||++++++||..+.++ ..++++++|++|+++|..++.++++|
T Consensus 153 id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~~~e 231 (241)
T PRK03996 153 TDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLSVEE 231 (241)
T ss_pred ECCCCCeecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECCHHH
Confidence 99999999999999999999999999999999999999999999999999875 55788999999999997667799999
Q ss_pred Cchhhhhc
Q 029964 157 LPLWHEEL 164 (184)
Q Consensus 157 ~~~~~~~~ 164 (184)
+..+++++
T Consensus 232 i~~~~~~~ 239 (241)
T PRK03996 232 IEKYLEKL 239 (241)
T ss_pred HHHHHHHh
Confidence 99998765
No 18
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2e-34 Score=231.61 Aligned_cols=152 Identities=19% Similarity=0.274 Sum_probs=142.4
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..+|++.+.+++|.++..|+++++++++++.+|+++++++|.+ +|||+|++||||+|+ ++|+||.
T Consensus 68 ~i~~~~-sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~ 145 (224)
T TIGR03633 68 HIGAAT-SGLVADARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFE 145 (224)
T ss_pred CEEEEE-eecHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEE
Confidence 799999 999999999999999999999999999999999999999998654 579999999999997 5999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCC
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDT 156 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~ 156 (184)
+||+|++.+++++|+|+|+.+++++||+.|+++|+.+||++++++||..+.+ |+.++++++|++|+++|..++.++++|
T Consensus 146 ~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 146 TDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred ECCCCCeecceEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999888 888999999999999997555676664
No 19
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-35 Score=222.94 Aligned_cols=159 Identities=21% Similarity=0.293 Sum_probs=146.3
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc----------CCCceeEEEEEEEEeCCC
Q 029964 1 MNIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYN----------NKNFLQTGMIVGGWDKYE 70 (184)
Q Consensus 1 ~~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~----------~r~p~~vs~iiaG~D~~~ 70 (184)
.||+|++ ||+.||++.+++++|.+++++++.||++++++.+.+.+|++.-. .+|||||++++||+|++
T Consensus 72 ~HIgca~-SGl~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~- 149 (241)
T KOG0176|consen 72 DHIGCAM-SGLIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDET- 149 (241)
T ss_pred hceeeec-cccccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCC-
Confidence 3899999 99999999999999999999999999999999999999998532 15899999999999985
Q ss_pred CcEEEEECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEE
Q 029964 71 GGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRK 150 (184)
Q Consensus 71 gp~Ly~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~ 150 (184)
||+||..||+|+|+.+++.|+|+|+.-+.+.|++.|+++++++||+.+++..|+.+++.... .+|++|++|+++|-. +
T Consensus 150 gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~-~~Nvev~~vt~e~~f-~ 227 (241)
T KOG0176|consen 150 GPQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLN-SNNVEVAVVTPEGEF-H 227 (241)
T ss_pred CceEEEeCCCCceEEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcC-ccceEEEEEcccCce-E
Confidence 99999999999999999999999999999999999999999999999999999999987654 678999999999766 4
Q ss_pred eecCCCCchhhhh
Q 029964 151 FYPGDTLPLWHEE 163 (184)
Q Consensus 151 ~~~~~~~~~~~~~ 163 (184)
+++++|++.++..
T Consensus 228 ~~t~EE~~~~i~~ 240 (241)
T KOG0176|consen 228 IYTPEEVEQVIKR 240 (241)
T ss_pred ecCHHHHHHHHhc
Confidence 5888888877654
No 20
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1.4e-33 Score=227.36 Aligned_cols=159 Identities=11% Similarity=0.159 Sum_probs=142.5
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHc----CCCceeEEEEEEEEeC-CCCcEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLG-QPATVKVAANLVRLLSYN----NKNFLQTGMIVGGWDK-YEGGKIY 75 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~-~~i~~~~la~~is~~~~~----~r~p~~vs~iiaG~D~-~~gp~Ly 75 (184)
||+|++ ||+.+|++.+++++|.+++.|++.++ .+++++.+|+.+++.++. +.|||+|++|++|||+ +.||+||
T Consensus 59 ~ig~~~-sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly 137 (228)
T TIGR03691 59 RIGFAA-VGKYNEFENLRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLY 137 (228)
T ss_pred CEEEEE-cCCHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEE
Confidence 899999 99999999999999999999999998 689999999988887653 3689999999999985 4689999
Q ss_pred EECCCCceeeeC-eEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEEeCCC--cEEE
Q 029964 76 GVPLGGTIIEQP-FAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIA--RDGASGGVVRTVTINSEG--VSRK 150 (184)
Q Consensus 76 ~id~~G~~~~~~-~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~--rd~~s~~~iev~iitkdg--~~~~ 150 (184)
++||+|++.+++ ++|+|+|++.++++||++|+++||.+||++++++||..+.+ ||..++.++||++|++++ ..++
T Consensus 138 ~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~ 217 (228)
T TIGR03691 138 RITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFR 217 (228)
T ss_pred EECCCCCceeccceEEECCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceE
Confidence 999999999976 89999999999999999999999999999999999999964 667888999999999765 2345
Q ss_pred eecCCCCchhh
Q 029964 151 FYPGDTLPLWH 161 (184)
Q Consensus 151 ~~~~~~~~~~~ 161 (184)
.++++|+++++
T Consensus 218 ~l~~~ei~~~l 228 (228)
T TIGR03691 218 RITGEALERLL 228 (228)
T ss_pred ECCHHHHHhhC
Confidence 68888887664
No 21
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-33 Score=224.23 Aligned_cols=140 Identities=19% Similarity=0.254 Sum_probs=133.4
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..+|++.+.+++|.+++.|+++++++++++.+|+.++..++.+ +|||+|++|++|||++.||+||.
T Consensus 69 ~i~~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~ 147 (213)
T cd03752 69 HIACAV-AGITSDANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQ 147 (213)
T ss_pred CEEEEE-ecChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEE
Confidence 799999 999999999999999999999999999999999999999986543 57999999999999756999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 142 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~ii 142 (184)
+||+|++.+++++|+|+|+.+++++||++|+++||++||++++++||..+.+||..++.+++|++|
T Consensus 148 ~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 148 SDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred ECCCCCeeeeeEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999888999999875
No 22
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.4e-33 Score=223.63 Aligned_cols=140 Identities=16% Similarity=0.199 Sum_probs=132.9
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||+.+|++.+++++|.+++.|+++++++++++.+|+.+++.+|.+ +|||+|++||+|||+. ||+||+
T Consensus 64 ~i~~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~-gp~Ly~ 141 (211)
T cd03749 64 HIGIAI-AGLTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDES-GPHLFQ 141 (211)
T ss_pred CEEEEE-EeChHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCC-CCeEEE
Confidence 799999 999999999999999999999999999999999999999987642 5799999999999975 899999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhc--CCCCHHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEe
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWK--EGMTKEEAEQLVVKAVSLAIARDG-ASGGVVRTVTIN 143 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~--~~~s~~eai~l~~~~l~~~~~rd~-~s~~~iev~iit 143 (184)
+||+|++.+++++|+|+|+++++++||++|+ ++||.+||+++++++|+.++.+|. .++.+|||++|+
T Consensus 142 ~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 142 TCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred ECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 9999999999999999999999999999999 599999999999999999999987 888999999984
No 23
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3e-33 Score=222.40 Aligned_cols=137 Identities=17% Similarity=0.228 Sum_probs=130.1
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||+.+|++.+.+++|.+++.|+++++++++++.+++.+++++|.+ +|||+|++||+|||++++|+||+
T Consensus 66 ~i~~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~ 144 (207)
T cd03755 66 HVCLAF-AGLTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQ 144 (207)
T ss_pred CEEEEE-ecchhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEE
Confidence 799999 999999999999999999999999999999999999999998554 47999999999999867999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 142 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~ii 142 (184)
+||+|++.+++++|+|+|+++++++||++|+++||.+||++++++||..+.+ .++.++||+++
T Consensus 145 iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 145 TDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred ECCCcCEEcceEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 9999999999999999999999999999999999999999999999999987 57789999875
No 24
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.1e-33 Score=222.49 Aligned_cols=139 Identities=17% Similarity=0.111 Sum_probs=131.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||+.+|++.+++++|.+++.|++++|++++++.+|+++++++|.+ +|||+|++||+|||+ +||+||.
T Consensus 69 ~i~~~~-sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~ 146 (212)
T cd03751 69 HIGIAV-AGLLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYM 146 (212)
T ss_pred cEEEEE-EEChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEE
Confidence 799999 999999999999999999999999999999999999999987653 579999999999997 4899999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 142 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~ii 142 (184)
+||+|++.+++++|+|+|+++++++||++|+++||++||+++++++|..+.+.+...+.++||+++
T Consensus 147 ~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 147 IEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred ECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 999999999999999999999999999999999999999999999999999877667788999875
No 25
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.5e-33 Score=220.79 Aligned_cols=139 Identities=19% Similarity=0.231 Sum_probs=130.5
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc--C---CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYN--N---KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~--~---r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||+.+|++.+.+++|.++..|+++++++++++.+|+.+++++|. . .|||+|++||||+|+++||+||+
T Consensus 68 ~i~~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~ 146 (215)
T cd03754 68 EIGCVM-TGMIADSRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYK 146 (215)
T ss_pred CEEEEE-EechhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEE
Confidence 799999 99999999999999999999999999999999999999997543 2 47999999999999766999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCC--C--CHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEG--M--TKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 142 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~--~--s~~eai~l~~~~l~~~~~rd~~s~~~iev~ii 142 (184)
+||+|++.+++++|+|+|+++++++||++|+++ | |.+||++++++||..+.+||.. ++++||+||
T Consensus 147 ~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~-~~~~ei~~~ 215 (215)
T cd03754 147 CDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFK-ATEIEVGVV 215 (215)
T ss_pred EcCCccEEeEEEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCC-CCcEEEEEC
Confidence 999999999999999999999999999999985 7 9999999999999999999965 889999985
No 26
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-33 Score=212.00 Aligned_cols=165 Identities=52% Similarity=0.919 Sum_probs=160.7
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCCcEEEEECCCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGG 81 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r~p~~vs~iiaG~D~~~gp~Ly~id~~G 81 (184)
||+||. ||.+||.|.+.+.++..+..|..++|+++.+...|+.++++.|.||..+..++|+||||+..|.++|.|-..|
T Consensus 59 ~i~cCR-SGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~iplGG 137 (224)
T KOG0174|consen 59 NIYCCR-SGSAADTQAIADIVRYHLELYTIQENKPPLVHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSIPLGG 137 (224)
T ss_pred cEEEec-CCchhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhCHHhhhcceEEeecccccCceEEEeecCc
Confidence 799999 9999999999999999999999999999999999999999999999999999999999998899999998899
Q ss_pred ceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCchhh
Q 029964 82 TIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWH 161 (184)
Q Consensus 82 ~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~~~ 161 (184)
...+.++..-|+||.+++++++..|+++||+||+++++++++..+++||..||+.|.+.+|+++|+.+++++++++++|.
T Consensus 138 ~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~ 217 (224)
T KOG0174|consen 138 SLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFA 217 (224)
T ss_pred eEeecceeeccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCh
Q 029964 162 EELEPQ 167 (184)
Q Consensus 162 ~~~~~~ 167 (184)
.+.+|.
T Consensus 218 v~t~p~ 223 (224)
T KOG0174|consen 218 VETPPP 223 (224)
T ss_pred ccCCCC
Confidence 888775
No 27
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=3.9e-32 Score=210.83 Aligned_cols=140 Identities=34% Similarity=0.461 Sum_probs=135.3
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC---CceeEEEEEEEEeCCCCcEEEEEC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK---NFLQTGMIVGGWDKYEGGKIYGVP 78 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r---~p~~vs~iiaG~D~~~gp~Ly~id 78 (184)
||+|++ +|..+|++.+.++++.++..|+++++++++++.+++++++.+|.++ |||++++|+||+|++++|+||.+|
T Consensus 40 ~i~~~~-sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id 118 (182)
T cd01906 40 HIGCAF-AGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVD 118 (182)
T ss_pred CEEEEE-eeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEEC
Confidence 799999 9999999999999999999999999999999999999999999875 899999999999985699999999
Q ss_pred CCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Q 029964 79 LGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 142 (184)
Q Consensus 79 ~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~ii 142 (184)
|+|++.+++++|+|+|+++++++||+.|+++||.+||++++++||..+.++|..++.+++|++|
T Consensus 119 ~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 119 PSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred CCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999988999999875
No 28
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.8e-32 Score=216.57 Aligned_cols=139 Identities=22% Similarity=0.294 Sum_probs=132.4
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
|++|++ ||+.+|++.+.+++|.+++.|+++++++++++.+|+.+++.+|.+ .|||+|++||||+|+. +|+||+
T Consensus 67 ~i~~~~-sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~-~~~ly~ 144 (211)
T cd03756 67 HVGAAT-SGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFE 144 (211)
T ss_pred CEEEEE-ecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCC-CCEEEE
Confidence 799999 999999999999999999999999999999999999999987654 3699999999999984 999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEe
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 143 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iit 143 (184)
+||+|++.+++++++|+|+++++++||+.|+++|+++||++++++||..+.++|. ++.+++|++|+
T Consensus 145 vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 145 TDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred ECCCCCeeeeEEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999988776 88999999997
No 29
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=2.7e-32 Score=217.06 Aligned_cols=139 Identities=21% Similarity=0.306 Sum_probs=133.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..+|++.+.++++.++..|++++|++++++.+|++++++++.+ +|||+|++||+|+|+++||+||.
T Consensus 66 ~i~~~~-sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~ 144 (209)
T cd01911 66 HIGCAV-AGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQ 144 (209)
T ss_pred CeEEEe-ccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEE
Confidence 799999 999999999999999999999999999999999999999988543 46999999999999877999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 142 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~ii 142 (184)
+||.|++.+++++++|+|+.+++++||+.|+++|+.+||++++++||..+..||. +++.++|+++
T Consensus 145 iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 145 TDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred ECCCCCeeeeeEEEeCCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999 8999999875
No 30
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.8e-32 Score=215.42 Aligned_cols=138 Identities=22% Similarity=0.298 Sum_probs=130.1
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC----------CCceeEEEEEEEEeCCCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN----------KNFLQTGMIVGGWDKYEG 71 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~----------r~p~~vs~iiaG~D~~~g 71 (184)
||+|++ ||+.+|++.+.+++|.+++.|++++|++++++.+++.+++++|.+ .|||+|++||||||+ +|
T Consensus 66 ~i~~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~g 143 (213)
T cd03753 66 HIGCAM-SGLIADARTLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NG 143 (213)
T ss_pred CEEEEE-ecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CC
Confidence 799999 999999999999999999999999999999999999999998753 379999999999997 48
Q ss_pred cEEEEECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Q 029964 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 142 (184)
Q Consensus 72 p~Ly~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~ii 142 (184)
|+||++||+|++.+++++|+|+++++++++|+++|+++|+++||++++++||+.+.+++ .++.++||++|
T Consensus 144 p~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 144 PQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred CEEEEECCCCCeecccEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999887765 66788999875
No 31
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=1.8e-31 Score=208.35 Aligned_cols=140 Identities=28% Similarity=0.355 Sum_probs=130.9
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH----Hc-CCCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLS----YN-NKNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~----~~-~r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..+|++.+.++++.+++.|++.++.+++++.+++.+++.+ +. ++||+++++|+||+|++++|+||.
T Consensus 45 ~i~~~~-sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~ 123 (190)
T PF00227_consen 45 NIIIGF-SGLTADFQYLIRRLREEAQEYRFSYGRPISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYS 123 (190)
T ss_dssp TEEEEE-EESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEE
T ss_pred cceeec-cccccchHHHHhhhcccchhhhhccCccccchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceee
Confidence 799999 999999999999999999999999999999997666666654 32 368999999999999876799999
Q ss_pred ECCCCceeee-CeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Q 029964 77 VPLGGTIIEQ-PFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 142 (184)
Q Consensus 77 id~~G~~~~~-~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~ii 142 (184)
+||+|++.++ ++.|+|+|+++++++|++.|+++||.+||++++++||+.+.++|..++++++|++|
T Consensus 124 vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 124 VDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp EETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred eccccccccccccccchhcchhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 9999999999 69999999999999999999999999999999999999999999999999999987
No 32
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-31 Score=205.83 Aligned_cols=164 Identities=18% Similarity=0.247 Sum_probs=152.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ +|+++|+..|++.+|..+++|.+++|.++|++.|++.++++.|.| .||||||++.+|||...|.+||+
T Consensus 71 ~iaC~v-aGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~ 149 (249)
T KOG0178|consen 71 NIACAV-AGLTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQ 149 (249)
T ss_pred ceEEEE-ecccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEe
Confidence 899999 999999999999999999999999999999999999999998755 58999999999999988999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCC-CCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE--Eeec
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEG-MTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR--KFYP 153 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~-~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~--~~~~ 153 (184)
.||||++..|++.++|.++..+++.|++.|+.+ ++++||+++|++.|...++.+..+...+|++.|++++.+. ++++
T Consensus 150 SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~ 229 (249)
T KOG0178|consen 150 SDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILK 229 (249)
T ss_pred cCCCCCccccceeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecC
Confidence 999999999999999999999999999999986 4599999999999999999998899999999999987654 4578
Q ss_pred CCCCchhhhhcCC
Q 029964 154 GDTLPLWHEELEP 166 (184)
Q Consensus 154 ~~~~~~~~~~~~~ 166 (184)
.+|+.+.+++.+.
T Consensus 230 ~~ev~kll~k~~~ 242 (249)
T KOG0178|consen 230 KDEVLKLLEKYHE 242 (249)
T ss_pred HHHHHHHHHHhhh
Confidence 8888888877654
No 33
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.4e-32 Score=206.93 Aligned_cols=159 Identities=14% Similarity=0.208 Sum_probs=148.3
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEE
Q 029964 1 MNIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIY 75 (184)
Q Consensus 1 ~~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly 75 (184)
.||+|.. ||+.+|++.+++..|+.+++|...|++++|+.++.+.++..||+| -||||++++|+|||+ ++|.||
T Consensus 70 ~~IG~vY-SGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~Ly 147 (233)
T KOG0181|consen 70 PHIGCVY-SGMGPDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLY 147 (233)
T ss_pred CCcceEE-ecCCCceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEE
Confidence 3899999 999999999999999999999999999999999999999999987 389999999999998 599999
Q ss_pred EECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCC
Q 029964 76 GVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGD 155 (184)
Q Consensus 76 ~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~ 155 (184)
++||||+++.|+++|.|.+...++.+||++|..++.+++++..++..|+...+.... .+++||+++...+.++ +++.
T Consensus 148 QvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege~~-~~nieigv~~~~~F~~--lt~~ 224 (233)
T KOG0181|consen 148 QVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEMT-AKNIEIGVCGENGFRR--LTPA 224 (233)
T ss_pred EECCccceeehhhhhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhccccc-cCceEEEEecCCceee--cCHH
Confidence 999999999999999999999999999999999999999999999999999887654 6789999999777655 8899
Q ss_pred CCchhhhhc
Q 029964 156 TLPLWHEEL 164 (184)
Q Consensus 156 ~~~~~~~~~ 164 (184)
||..|++++
T Consensus 225 eI~d~l~~l 233 (233)
T KOG0181|consen 225 EIEDYLASL 233 (233)
T ss_pred HHHHHHhcC
Confidence 999988764
No 34
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.8e-32 Score=209.08 Aligned_cols=161 Identities=17% Similarity=0.245 Sum_probs=148.9
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||.+++ ||+.||++-+++++|-+|+.|++..+.+++++.++++|+.+-|.| |||||+|.+|+|+|+++.|+||+
T Consensus 69 hV~maf-aGl~aDArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyq 147 (249)
T KOG0183|consen 69 HVVMAF-AGLTADARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQ 147 (249)
T ss_pred eeeEEe-cCCCccceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEe
Confidence 899999 999999999999999999999999999999999999999987765 79999999999999988999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCC--CCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecC
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEG--MTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPG 154 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~--~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~ 154 (184)
+||+|.|++|++.|+|-+++.++.+|||.|+++ .+..++++|+.++|..+... .+.++|++++++++.. +.+..
T Consensus 148 tePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~~~~-~~l~~ 223 (249)
T KOG0183|consen 148 TEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQS---GGKNIEVAVMKRRKDL-KMLES 223 (249)
T ss_pred eCCCcchhhhhccccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhc---CCCeeEEEEEecCCce-eecCH
Confidence 999999999999999999999999999999876 78899999999999999874 4578999999998854 35899
Q ss_pred CCCchhhhhcCCh
Q 029964 155 DTLPLWHEELEPQ 167 (184)
Q Consensus 155 ~~~~~~~~~~~~~ 167 (184)
++|+.+..+++..
T Consensus 224 ~~I~~~v~~ie~E 236 (249)
T KOG0183|consen 224 EEIDDIVKEIEQE 236 (249)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877654
No 35
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.5e-31 Score=202.73 Aligned_cols=164 Identities=15% Similarity=0.161 Sum_probs=152.5
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEE
Q 029964 1 MNIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIY 75 (184)
Q Consensus 1 ~~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly 75 (184)
.+|||++ +|..+|++..++++|.++.+++++||+++|++.||++++++.|.| .||+||.+++.|+|++.||.+|
T Consensus 74 k~ig~v~-tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vY 152 (246)
T KOG0182|consen 74 KKIGCVI-TGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVY 152 (246)
T ss_pred ccceEEE-ecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceE
Confidence 3799999 999999999999999999999999999999999999999998754 5899999999999999899999
Q ss_pred EECCCCceeeeCeEEEecChhhHHHHhhhhhcCC--CCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeec
Q 029964 76 GVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEG--MTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYP 153 (184)
Q Consensus 76 ~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~--~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~ 153 (184)
++||.|.++.+++++.|.....+.++|||+||++ .|.+|+++++..||..++..|..+ ..+||++++++.++++.|+
T Consensus 153 k~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~-se~EVgvv~~~~p~f~~Ls 231 (246)
T KOG0182|consen 153 KTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKS-SELEVGVVTVDNPEFRILS 231 (246)
T ss_pred eecCccccccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCC-cceEEEEEEcCCcceeecc
Confidence 9999999999999999999999999999999987 779999999999999999999875 4799999999999777899
Q ss_pred CCCCchhhhhcCC
Q 029964 154 GDTLPLWHEELEP 166 (184)
Q Consensus 154 ~~~~~~~~~~~~~ 166 (184)
.+||+.-+-.+-+
T Consensus 232 ~~eie~hL~~IAE 244 (246)
T KOG0182|consen 232 AEEIEEHLQAIAE 244 (246)
T ss_pred HHHHHHHHHHhhh
Confidence 9999887755543
No 36
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-30 Score=206.15 Aligned_cols=163 Identities=28% Similarity=0.396 Sum_probs=153.1
Q ss_pred EccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCCc-eeEEEEEEEEeCCCCcEEEEECCCCcee
Q 029964 6 LRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTII 84 (184)
Q Consensus 6 ~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r~p-~~vs~iiaG~D~~~gp~Ly~id~~G~~~ 84 (184)
+.|+|-+||||++-+.+..+|+.|++++++.|+|..+++++|+++|+||.. +.++.+|+|||+. ||.||.+|..|+-.
T Consensus 114 GTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~YkGmGLsmGtMi~G~Dk~-GP~lyYVDseG~Rl 192 (285)
T KOG0175|consen 114 GTMAGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQYKGMGLSMGTMIAGWDKK-GPGLYYVDSEGTRL 192 (285)
T ss_pred hcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhccCcchhheeeEeeccCC-CCceEEEcCCCCEe
Confidence 446999999999999999999999999999999999999999999999986 9999999999995 99999999999999
Q ss_pred eeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCch----h
Q 029964 85 EQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPL----W 160 (184)
Q Consensus 85 ~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~----~ 160 (184)
+.+-.++|+||.+|+++|+..|+++|+.+||.+|+++++-.|..||..||+.+.+..|+.||+.+ +++.++.. |
T Consensus 193 ~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~--v~~~Dv~~L~~~~ 270 (285)
T KOG0175|consen 193 SGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVK--VSNTDVSELHYHY 270 (285)
T ss_pred cCceEeecCCCceeEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCcccee--cCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986 56666654 6
Q ss_pred hhhcCChhhhh
Q 029964 161 HEELEPQNSLL 171 (184)
Q Consensus 161 ~~~~~~~~~~~ 171 (184)
++.++|.+++-
T Consensus 271 ~e~~~~~~~~~ 281 (285)
T KOG0175|consen 271 YEVAPPEAEKD 281 (285)
T ss_pred HHhcCccchhh
Confidence 78888888874
No 37
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-29 Score=194.47 Aligned_cols=154 Identities=22% Similarity=0.227 Sum_probs=145.3
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCC-ceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKN-FLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r~-p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
|+.++. ||++||+..|.++++.+.+.|+..+++.+++..+|+++|.++|..|. |+.+..|++|+|++|++.+|..||.
T Consensus 69 ~~vl~~-sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPv 147 (235)
T KOG0179|consen 69 NIVLGS-SGFYADTLALVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPV 147 (235)
T ss_pred ceEEec-ccchhhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCC
Confidence 688999 99999999999999999999999999999999999999999999874 9999999999999999999999999
Q ss_pred CceeeeCeEEEecChhhHHHHhhhhhc-----------CCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 81 GTIIEQPFAIGGSGSSYLYGFFDQAWK-----------EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 81 G~~~~~~~~a~G~gs~~a~~~Le~~~~-----------~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
|++.+..+.|.|+++..++++|+.... +.+|+++|++|++.+|..|.+||..+|+.++|+|+++||+++
T Consensus 148 Gsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~ 227 (235)
T KOG0179|consen 148 GSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEV 227 (235)
T ss_pred cceeeeeeecCCcchhhhhhhhhhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEE
Confidence 999999999999999999999998532 248999999999999999999999999999999999999998
Q ss_pred EeecCCC
Q 029964 150 KFYPGDT 156 (184)
Q Consensus 150 ~~~~~~~ 156 (184)
+++|..+
T Consensus 228 e~~~Lrk 234 (235)
T KOG0179|consen 228 ETLPLRK 234 (235)
T ss_pred EeeeccC
Confidence 8887654
No 38
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-29 Score=193.32 Aligned_cols=147 Identities=23% Similarity=0.306 Sum_probs=141.6
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC---CCceeEEEEEEEEeCCCCcEEEEEC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN---KNFLQTGMIVGGWDKYEGGKIYGVP 78 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~---r~p~~vs~iiaG~D~~~gp~Ly~id 78 (184)
|+.|+. +|..+|+-++.+++.+.++.|+.++|+++||+.+|+++++.+..+ |+|+.|++++||+|++.||.||++|
T Consensus 41 ~~lm~~-~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iD 119 (200)
T KOG0177|consen 41 HILMAT-VGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYID 119 (200)
T ss_pred ceeeee-ecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeeh
Confidence 678999 999999999999999999999999999999999999999998764 6799999999999998899999999
Q ss_pred CCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 79 LGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 79 ~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
..|+..+.+|.+.|.|+.++.++|++.|+|+||.+||+++..+|+..+.+|-.....++.|.+|+|||.+.
T Consensus 120 yla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdGir~ 190 (200)
T KOG0177|consen 120 YLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDGIRK 190 (200)
T ss_pred hhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCcee
Confidence 99999999999999999999999999999999999999999999999999998888899999999999976
No 39
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.6e-28 Score=191.23 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=147.6
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc----C-CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYN----N-KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~----~-r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||++++ +|+++|++.+.+++|.+|..++..+++++|+..+...+.+-+|. | ||||||+++++|+|+. ||+||+
T Consensus 69 h~g~si-AGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~-G~hl~e 146 (264)
T KOG0863|consen 69 HIGISI-AGLTADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDES-GPHLYE 146 (264)
T ss_pred ccceEE-eccCcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCC-CceeEE
Confidence 899999 99999999999999999999999999999999999999988764 3 8999999999999995 999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhc--CCCCHHHHHHHHHHHHHHHHHhc-CCCCCeEEEEEEeCCCcEEEeec
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWK--EGMTKEEAEQLVVKAVSLAIARD-GASGGVVRTVTINSEGVSRKFYP 153 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~--~~~s~~eai~l~~~~l~~~~~rd-~~s~~~iev~iitkdg~~~~~~~ 153 (184)
++|+|++.+++..++|+.|+.++++||+... ++++.+|.|..++.||+.++..| ..++.+++|+||.||-++. +++
T Consensus 147 ~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~-~~d 225 (264)
T KOG0863|consen 147 FCPSGNVFECKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFT-ILD 225 (264)
T ss_pred EcCCccEEEEeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceE-eec
Confidence 9999999999999999999999999999875 48999999999999999999855 6778899999999998874 688
Q ss_pred CCCCchhhhhcC
Q 029964 154 GDTLPLWHEELE 165 (184)
Q Consensus 154 ~~~~~~~~~~~~ 165 (184)
.+++.+|.+..+
T Consensus 226 ~~~~~k~~~~~~ 237 (264)
T KOG0863|consen 226 QKDVAKYVDLFK 237 (264)
T ss_pred HHHHHHHHHHhh
Confidence 888888875443
No 40
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.2e-27 Score=187.18 Aligned_cols=146 Identities=29% Similarity=0.445 Sum_probs=141.6
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCCcEEEEECCCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGG 81 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r~p~~vs~iiaG~D~~~gp~Ly~id~~G 81 (184)
||+||. +|..+|...+.+-+.++...+++..++.++|-.+-+++.+.++.|+...++.+|++|+|.+ ||+||++.|.|
T Consensus 77 ~IyccG-AGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~T-GpHLy~i~phG 154 (271)
T KOG0173|consen 77 NIYCCG-AGTAADTEMVTRMISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQGHIGAALILGGVDPT-GPHLYSIHPHG 154 (271)
T ss_pred ceEEcc-CCchhhHHHHHHHHHHHHHHHHhccCCCCceeeHHHHHHHHHHHhcCcccceeEEccccCC-CCceEEEcCCC
Confidence 799999 9999999999999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred ceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 82 TIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 82 ~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
+..+.+|.+.|||+..++++||.+|+++|++|||++|+.+|+...+..|..||+++++++|++.+...
T Consensus 155 Std~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~ 222 (271)
T KOG0173|consen 155 STDKLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEY 222 (271)
T ss_pred CcCccceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999877654
No 41
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.2e-27 Score=181.69 Aligned_cols=151 Identities=17% Similarity=0.104 Sum_probs=136.8
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEE
Q 029964 1 MNIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIY 75 (184)
Q Consensus 1 ~~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly 75 (184)
.||+|++ +|+.+|.+.+.+++|.++..|+.+|+.++|...+|.+++++.|-+ .|||||+.++++||. +||+||
T Consensus 72 r~iG~av-aGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~Ly 149 (254)
T KOG0184|consen 72 RHIGMAV-AGLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLY 149 (254)
T ss_pred ccccEEE-eccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEE
Confidence 4899999 999999999999999999999999999999999999999987643 689999999999997 599999
Q ss_pred EECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCC--CcEEEeec
Q 029964 76 GVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSE--GVSRKFYP 153 (184)
Q Consensus 76 ~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkd--g~~~~~~~ 153 (184)
.+||+|.++.++++|+|.|.+.+++.|||.--.+|+++|+++.+.+.|-.+.+......-.+|+.|+..+ |.. +..|
T Consensus 150 miepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h-~~vp 228 (254)
T KOG0184|consen 150 MIEPSGSSYGYKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLH-EKVP 228 (254)
T ss_pred EEcCCCCccceeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCcc-ccCc
Confidence 9999999999999999999999999999987789999999999999998888776666677999999975 444 3454
Q ss_pred C
Q 029964 154 G 154 (184)
Q Consensus 154 ~ 154 (184)
.
T Consensus 229 ~ 229 (254)
T KOG0184|consen 229 S 229 (254)
T ss_pred H
Confidence 4
No 42
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1e-25 Score=169.82 Aligned_cols=153 Identities=22% Similarity=0.265 Sum_probs=145.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCC-ceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKN-FLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r~-p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
+++++. +|++.|+|.+.+++|..-+.|+++.++.+.|+.+++++|.++|++|. |+.+..++||+|++++|++...|..
T Consensus 48 r~y~GL-~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~I 126 (204)
T KOG0180|consen 48 RLYLGL-TGLATDVQTLLERLRFRKNLYELREEREIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLI 126 (204)
T ss_pred eeEEec-cccchhHHHHHHHHHHHHhHHHhhhhcccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccc
Confidence 578899 99999999999999999999999999999999999999999999884 9999999999999999999999999
Q ss_pred Ccee-eeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCC
Q 029964 81 GTII-EQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGD 155 (184)
Q Consensus 81 G~~~-~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~ 155 (184)
|... ..+|++.|.++...++..|..|+|||..++..+.+.++|..+.+||+.||+...|.+|+||.+.++.++..
T Consensus 127 Gc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~~r~lK~R 202 (204)
T KOG0180|consen 127 GCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFETISQALLNAVDRDALSGWGAVVYIITKDKVTKRTLKGR 202 (204)
T ss_pred cCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhhhhhhhhc
Confidence 9885 57999999999999999999999999999999999999999999999999999999999998887666554
No 43
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.1e-26 Score=177.92 Aligned_cols=165 Identities=21% Similarity=0.246 Sum_probs=150.6
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHcCC---CceeEEEEEEEEeCCCCcEEEE
Q 029964 1 MNIDCLRLLFQAADSQTVSDYVRYFLHQHT-IQLGQPATVKVAANLVRLLSYNNK---NFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 1 ~~I~~~~~sG~~aD~~~l~~~lr~~~~~~~-~~~~~~i~~~~la~~is~~~~~~r---~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
.|+.+++ ||..||+|.+.+.+.....+.. +..|+.+.|+.+++++++.||.+| .|++.++|+||+|.++.|.|-+
T Consensus 80 dntllG~-sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~ 158 (256)
T KOG0185|consen 80 DNTLLGA-SGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGY 158 (256)
T ss_pred CceEEec-CccHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEE
Confidence 3789999 9999999999999988877644 455699999999999999999875 5999999999999988999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhc---CCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeec
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWK---EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYP 153 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~---~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~ 153 (184)
+|..|..++.+.+|+|.|.+.+.++|++.|. ++++.+||.+++.+|++..+.||+.+.++++|++|+++|+.. -+
T Consensus 159 V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i--~~ 236 (256)
T KOG0185|consen 159 VDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTI--SK 236 (256)
T ss_pred EeeccccccCchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEe--cC
Confidence 9999999999999999999999999999997 479999999999999999999999999999999999999975 67
Q ss_pred CCCCchhhhhcCChh
Q 029964 154 GDTLPLWHEELEPQN 168 (184)
Q Consensus 154 ~~~~~~~~~~~~~~~ 168 (184)
+..+...|+..+...
T Consensus 237 p~qv~~~W~fa~~~~ 251 (256)
T KOG0185|consen 237 PYQVKTNWDFAETIK 251 (256)
T ss_pred ceeeeecchhhhhcc
Confidence 888889998776543
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.89 E-value=2.2e-22 Score=155.60 Aligned_cols=126 Identities=18% Similarity=0.123 Sum_probs=109.8
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-HcCCCceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLS-YNNKNFLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~-~~~r~p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
|++||. ||..+|+|.+.+.++.+++.|+. +. ++.+|+.++.+. +.+++|+.+++|++ | .|+||.+||.
T Consensus 42 ~i~~~~-aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~~a~l~~~l~~~~~~~~l~~~~lv~--d---~~~ly~id~~ 110 (172)
T PRK05456 42 KVLAGF-AGSTADAFTLFERFEAKLEEHQG--NL---LRAAVELAKDWRTDRYLRRLEAMLIVA--D---KEHSLIISGN 110 (172)
T ss_pred CEEEEE-eccHHHHHHHHHHHHHHHHHccC--cc---HHHHHHHHHHHHhccCCCccEEEEEEE--c---CCcEEEECCC
Confidence 789999 99999999999999999999882 22 577777665553 34567888999984 3 3699999999
Q ss_pred Cceeee--CeEEEecChhhHHHHhhhhhc-CCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEE
Q 029964 81 GTIIEQ--PFAIGGSGSSYLYGFFDQAWK-EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVT 141 (184)
Q Consensus 81 G~~~~~--~~~a~G~gs~~a~~~Le~~~~-~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~i 141 (184)
|+..+. ++.++|+|+.+++++||+.|+ ++| ||++++++|++.+.+||..|+++++|-.
T Consensus 111 G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 111 GDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred CcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 999766 899999999999999999999 999 9999999999999999999999988754
No 45
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.89 E-value=4.4e-22 Score=149.68 Aligned_cols=121 Identities=29% Similarity=0.336 Sum_probs=117.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--CceeEEEEEEEEeCCCCcEEEEECC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK--NFLQTGMIVGGWDKYEGGKIYGVPL 79 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r--~p~~vs~iiaG~D~~~gp~Ly~id~ 79 (184)
++++++ +|..+|++.+.++++.+++.|++.++.++++..+++.+++.++.++ +|+++++|++|+|+ ++|+||.+||
T Consensus 40 ~~~~~~-sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~ 117 (164)
T cd01901 40 GIAWGL-AGLAADAQTLVRRLREALQLYRLRYGEPISVVALAKELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDP 117 (164)
T ss_pred CeEEEE-ecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECC
Confidence 789999 9999999999999999999999999999999999999999998874 89999999999998 6999999999
Q ss_pred CCceeee-CeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 029964 80 GGTIIEQ-PFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVS 124 (184)
Q Consensus 80 ~G~~~~~-~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~ 124 (184)
+|++.+. .++++|.++.++.++|++.|+++++.+|+++++.+||.
T Consensus 118 ~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 118 SGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELALKALK 163 (164)
T ss_pred CcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 9999999 99999999999999999999999999999999999985
No 46
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.89 E-value=2.8e-22 Score=154.41 Aligned_cols=126 Identities=19% Similarity=0.098 Sum_probs=107.6
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-HcCCCceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLS-YNNKNFLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~-~~~r~p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
||+||+ ||..+|+|.+.++++.+++.|+.+.++ .+++.+.+++ |.+++.+.+.++++++ ++||.+||.
T Consensus 41 ~i~~~~-aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~aa~l~~~l~~~~~~~~l~a~~iv~~~-----~~ly~id~~ 109 (171)
T cd01913 41 KVIAGF-AGSTADAFTLFERFEAKLEQYPGNLLR-----AAVELAKDWRTDRYLRRLEAMLIVADK-----EHTLLISGN 109 (171)
T ss_pred CEEEEe-cccHHHHHHHHHHHHHHHHHhhchHHH-----HHHHHHHHHHhccCcCceEEEEEEeCC-----CcEEEECCC
Confidence 899999 999999999999999999999988773 5566655553 4444445576666543 389999999
Q ss_pred CceeeeC--eEEEecChhhHHHHhhhhhcCC-CCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEE
Q 029964 81 GTIIEQP--FAIGGSGSSYLYGFFDQAWKEG-MTKEEAEQLVVKAVSLAIARDGASGGVVRTVT 141 (184)
Q Consensus 81 G~~~~~~--~~a~G~gs~~a~~~Le~~~~~~-~s~~eai~l~~~~l~~~~~rd~~s~~~iev~i 141 (184)
|+..+.+ +.++||||.+++++||..|+++ || +.+++.++++.|.+||..|+++|.|-.
T Consensus 110 G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 110 GDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred CCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 9999984 9999999999999999999995 99 559999999999999999999988753
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.88 E-value=1.4e-21 Score=150.49 Aligned_cols=126 Identities=17% Similarity=0.104 Sum_probs=107.4
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHcCCCceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLL-SYNNKNFLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~-~~~~r~p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
||+||+ ||..+|+|.+.++++.+++.|+.+. .+.+|+.++++ .|.+++.+.+.+|++|+ ++||.+||.
T Consensus 41 ~i~~~~-aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~a~l~~~~~~~~~~~~l~a~~iv~~~-----~~ly~i~~~ 109 (171)
T TIGR03692 41 KVLAGF-AGSTADAFTLFERFEAKLEEYQGNL-----TRAAVELAKDWRTDRYLRRLEAMLIVADK-----ETSLLISGT 109 (171)
T ss_pred CEEEEe-cchHHHHHHHHHHHHHHHHHccCch-----HHHHHHHHHHHhhcccccccEEEEEEEcC-----CCEEEEcCC
Confidence 799999 9999999999999999999988743 47778877774 24444446677777643 389999999
Q ss_pred Cceeee--CeEEEecChhhHHHHhhhhhc-CCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEE
Q 029964 81 GTIIEQ--PFAIGGSGSSYLYGFFDQAWK-EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVT 141 (184)
Q Consensus 81 G~~~~~--~~~a~G~gs~~a~~~Le~~~~-~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~i 141 (184)
|.+.+. ++.++||||.+++++||..|+ ++|+ |++++.++++.|.+||..|+++|.|-.
T Consensus 110 G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 110 GDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred CcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 999985 699999999999999999994 7777 999999999999999999999988753
No 48
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=4.3e-08 Score=76.58 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=122.8
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHc---C-C------C-ceeEEEEEEEEeCCC
Q 029964 3 IDCLRLLFQAADSQTVSDYVRYFLHQHTIQL-GQPATVKVAANLVRLLSYN---N-K------N-FLQTGMIVGGWDKYE 70 (184)
Q Consensus 3 I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~-~~~i~~~~la~~is~~~~~---~-r------~-p~~vs~iiaG~D~~~ 70 (184)
+.++. +|..|-.|.+++.+.+..+..+-.. -.-.+.-..+.++.....+ . + . -|.||+|++|--..+
T Consensus 45 lvl~t-aGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~ 123 (255)
T COG3484 45 LVLCT-AGNLAITQAVLHLLDERIQRDDGDSLLNIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGE 123 (255)
T ss_pred EEEEe-cCccHHHHHHHHHHHHHhhccchhhhhcchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCC
Confidence 45678 9999999999999988886333221 2234666677777765432 2 1 1 399999999988755
Q ss_pred CcEEEEECCCCceee----eCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCC
Q 029964 71 GGKIYGVPLGGTIIE----QPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEG 146 (184)
Q Consensus 71 gp~Ly~id~~G~~~~----~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg 146 (184)
-|+||.|-|.|+|.+ .+|.-+|. +++-+++|++.+..++.++||.++++-++...+..+..-|-.+++.++.+|.
T Consensus 124 pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds 202 (255)
T COG3484 124 PPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS 202 (255)
T ss_pred CceeEEEccCCCeeecCCCCceeEccc-cccCchhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence 689999999999975 58888998 5678999999999999999999999999999999998888889999999986
Q ss_pred cEE-EeecCCCCchhhhhc
Q 029964 147 VSR-KFYPGDTLPLWHEEL 164 (184)
Q Consensus 147 ~~~-~~~~~~~~~~~~~~~ 164 (184)
... +.+--.+.+.|...+
T Consensus 203 ~~v~~~~ri~edd~Y~a~i 221 (255)
T COG3484 203 FSVRHTLRIREDDPYFAKI 221 (255)
T ss_pred eeeeeeeEeccCChHHHHH
Confidence 542 223334555554433
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.3e-05 Score=60.70 Aligned_cols=128 Identities=18% Similarity=0.127 Sum_probs=88.4
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-cCCCceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSY-NNKNFLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~-~~r~p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
.++.++ +|.++|+..|.+++..+++.|.-+. .+.+..+..+.-- .+.|.+.+-++++ |+ -.+|-+...
T Consensus 45 kvlaGF-AGstADaftLfe~fe~kle~~~g~L-----~raavelaKdwr~Dk~lr~LEAmllVa--d~---~~il~isG~ 113 (178)
T COG5405 45 KVLAGF-AGSTADAFTLFERFEAKLEQYQGDL-----FRAAVELAKDWRTDKYLRKLEAMLLVA--DK---THILIITGN 113 (178)
T ss_pred cEEEEe-cccchhHHHHHHHHHHHHHHccCcH-----HHHHHHHHHhhhhhhHHHHHhhheeEe--CC---CcEEEEecC
Confidence 478899 9999999999999999999885221 1122222222110 0113344545544 43 356777777
Q ss_pred Cceee--eCeEEEecChhhHHHHhhhhhcC-CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEe
Q 029964 81 GTIIE--QPFAIGGSGSSYLYGFFDQAWKE-GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 143 (184)
Q Consensus 81 G~~~~--~~~~a~G~gs~~a~~~Le~~~~~-~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iit 143 (184)
|...+ .+..|+|||..++.+.-...++. ++ .|.+++.++|..+-+.+..+..++.|-.+.
T Consensus 114 gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~l---sA~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 114 GDVIEPEDDIIAIGSGGNYALSAARALMENTEL---SAREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred cceecCCCCeEEEcCCchHHHHHHHHHHhccCC---CHHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 87653 46899999999999988887753 55 466779999999888888888888776554
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=90.56 E-value=1.1 Score=35.28 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=78.9
Q ss_pred hHHHHHHHHH---HHHHHHHHHHHhCCCCCHHHHHHHHHHH---HH--cCCC-ceeEEEEEEE-------EeCCCCcEEE
Q 029964 12 AADSQTVSDY---VRYFLHQHTIQLGQPATVKVAANLVRLL---SY--NNKN-FLQTGMIVGG-------WDKYEGGKIY 75 (184)
Q Consensus 12 ~aD~~~l~~~---lr~~~~~~~~~~~~~i~~~~la~~is~~---~~--~~r~-p~~vs~iiaG-------~D~~~gp~Ly 75 (184)
++|-+.+.-+ -+.+..+..+..|.--+=+.|.+....+ ++ ..|. -.-.+-++.| .+.. .-++|
T Consensus 16 aGDkR~I~F~G~~~~re~LEeeLYsG~IktdeEL~kkA~Elgv~i~I~D~r~KV~~~~~vlvGEV~s~~g~~sk-RRRiY 94 (194)
T PF09894_consen 16 AGDKRNIAFRGDEEKREKLEEELYSGKIKTDEELLKKAEELGVKIKITDDREKVRKIGDVLVGEVTSISGKDSK-RRRIY 94 (194)
T ss_pred eccceeeeecCCHHHHHHHHHHHhCCccCCHHHHHHHHHHcCCEEEEecCchheEEeCCEEEEEEEEEcCccce-eeEEE
Confidence 3455555322 2233344445567777888888887765 22 1232 1222223333 2321 23455
Q ss_pred E-------ECCCCceeeeCe-------EEEecC--hhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEE
Q 029964 76 G-------VPLGGTIIEQPF-------AIGGSG--SSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRT 139 (184)
Q Consensus 76 ~-------id~~G~~~~~~~-------~a~G~g--s~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev 139 (184)
- +|..|.-....- +..|.. .+.+...|.+.|++.|+++++..+..++|..+...-+.-+..+++
T Consensus 95 ~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk~~K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~ 174 (194)
T PF09894_consen 95 ATKGKYAIVEIENDEITNKSRGEGSGIIVFGNKFTKEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDI 174 (194)
T ss_pred ecCCCEEEEEecCCeEEEEecCCceeEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEE
Confidence 3 344554433222 222222 357888899999999999999999999999998877766777888
Q ss_pred EEEeCC
Q 029964 140 VTINSE 145 (184)
Q Consensus 140 ~iitkd 145 (184)
...++.
T Consensus 175 ~~~~~~ 180 (194)
T PF09894_consen 175 YITTKK 180 (194)
T ss_pred EEeccc
Confidence 777653
No 51
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=89.62 E-value=0.64 Score=34.43 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=39.7
Q ss_pred EEECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHH
Q 029964 75 YGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQ 117 (184)
Q Consensus 75 y~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~ 117 (184)
..+|-+|.+...+|...|-||..+-+-+-..|-+++|++||.+
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~k 113 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALK 113 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHh
Confidence 4678899999999999999999999999999999999999874
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=74.63 E-value=11 Score=30.92 Aligned_cols=51 Identities=6% Similarity=0.074 Sum_probs=42.5
Q ss_pred hhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCC
Q 029964 95 SSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSE 145 (184)
Q Consensus 95 s~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkd 145 (184)
.+.+..+|.++|.+.++++++.++...+|..+...-+.-+..+.+..+++.
T Consensus 131 Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 131 KEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 346677888899999999999999999999998776666677888888763
No 53
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=70.94 E-value=8.2 Score=30.50 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCchh
Q 029964 114 EAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLW 160 (184)
Q Consensus 114 eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~~ 160 (184)
|++...+..|...+..|......++++|||-+|.-+...|.-++..|
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~~nF 68 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDAANF 68 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhhHhhc
Confidence 67788888888899999998899999999999877666666666555
No 54
>PRK09732 hypothetical protein; Provisional
Probab=57.86 E-value=55 Score=24.20 Aligned_cols=40 Identities=10% Similarity=0.044 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEe
Q 029964 108 EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKF 151 (184)
Q Consensus 108 ~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~ 151 (184)
+.+|++.|.+++..++..+.+. +..+.|+|++..|...-+
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~a~ 44 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHLLAL 44 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEEEE
Confidence 4699999999999999988875 457999999999987543
No 55
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=55.22 E-value=64 Score=24.20 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=33.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 107 KEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 107 ~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
++.++++.|.+++..++..+.+. +..+.|++|+.+|-..
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~~~ 43 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGHLV 43 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCCEE
Confidence 46799999999999999877763 6789999999998764
No 56
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=51.89 E-value=23 Score=25.70 Aligned_cols=37 Identities=30% Similarity=0.216 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 109 GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 109 ~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
.+|.++|.+++..+++.+.++ +..+-|+||+..|...
T Consensus 2 ~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~G~~~ 38 (132)
T PF03928_consen 2 SLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAGGHLL 38 (132)
T ss_dssp EE-HHHHHHHHHHHHHHHHHT----T---EEEEEETTS-EE
T ss_pred CcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECCCCEE
Confidence 468899999999999999885 3457899999998764
No 57
>PF05113 DUF693: Protein of unknown function (DUF693); InterPro: IPR007800 This family consists of uncharacterised proteins from Borrelia burgdorferi.
Probab=49.35 E-value=51 Score=27.60 Aligned_cols=57 Identities=21% Similarity=0.177 Sum_probs=39.0
Q ss_pred EEEEEEEeCCCCcEEEEECCCCceeeeCeEEEecChhhHHHHh---hhhhcCCCCHHHHHHHH
Q 029964 60 GMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFF---DQAWKEGMTKEEAEQLV 119 (184)
Q Consensus 60 s~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~gs~~a~~~L---e~~~~~~~s~~eai~l~ 119 (184)
.+|.+|+= |+-.-..-|+|.+.-.--.-.-+.+.+....| +-.-.++||.+||++.+
T Consensus 98 ~FImaGyL---g~Pmstdyp~gDFsvelev~LlsksnFfnRkl~~~e~k~fKg~TV~daI~sv 157 (314)
T PF05113_consen 98 DFIMAGYL---GAPMSTDYPGGDFSVELEVYLLSKSNFFNRKLDGKEYKNFKGMTVQDAIKSV 157 (314)
T ss_pred cEEeeccc---CCCceeccCCCceEEEEEEEEeecchhHhhhhccccccccCCcCHHHHHHHh
Confidence 36778873 44455556888887655566667787877777 44444689999988654
No 58
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=45.95 E-value=13 Score=22.04 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=22.2
Q ss_pred EecChhhHHHHhhhhh-cCCCCHHHHHHHHHH
Q 029964 91 GGSGSSYLYGFFDQAW-KEGMTKEEAEQLVVK 121 (184)
Q Consensus 91 ~G~gs~~a~~~Le~~~-~~~~s~~eai~l~~~ 121 (184)
.|+....+...+.+.. .++++.++.++.+++
T Consensus 13 LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp TTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 4777778888888876 788998888776654
No 59
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=41.75 E-value=27 Score=29.32 Aligned_cols=72 Identities=24% Similarity=0.278 Sum_probs=45.4
Q ss_pred EEEEeCCCCcEEE-EECCCCceeeeCeEEEecC-hhhHHHHhhhhhcC-CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEE
Q 029964 63 VGGWDKYEGGKIY-GVPLGGTIIEQPFAIGGSG-SSYLYGFFDQAWKE-GMTKEEAEQLVVKAVSLAIARDGASGGVVRT 139 (184)
Q Consensus 63 iaG~D~~~gp~Ly-~id~~G~~~~~~~~a~G~g-s~~a~~~Le~~~~~-~~s~~eai~l~~~~l~~~~~rd~~s~~~iev 139 (184)
+.|+|+..|-.+| ..-.+|-|.+. ..|.+ -.-.+.-|-+.|++ ++|+|+|++|..-= -.+..+..++..|..
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLsLP--R~iG~hp~sge~I~a 151 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLLSLP--RVIGKHPDSGEEISA 151 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHHcCc--hhhCCCCCCCcEEEe
Confidence 4678865454444 56677766543 45666 45556667778886 79999998876433 334444566666643
No 60
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.08 E-value=59 Score=20.35 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=28.0
Q ss_pred hhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcC
Q 029964 96 SYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDG 131 (184)
Q Consensus 96 ~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~ 131 (184)
+.+-.-+.+..-.+||.-|||.++...|+.-...+.
T Consensus 14 Q~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk~~~ 49 (60)
T COG3140 14 QKAVERIQELMAEGMSSGEAIALVAQELRENHKGEN 49 (60)
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHHhcccc
Confidence 445556666777899999999999999997766553
No 61
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=37.84 E-value=1.5e+02 Score=24.65 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=40.6
Q ss_pred eEEEecChhhHHHHhhhh----hcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 88 FAIGGSGSSYLYGFFDQA----WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 88 ~~a~G~gs~~a~~~Le~~----~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
..++|.|..+++..+-.. .+.+++.+||.+.+++-+..... ..+...-+-.|+++|..-
T Consensus 187 ~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~---~~~~~gg~Iavd~~G~~~ 249 (263)
T cd04513 187 AAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFD---GPDFEGAVVALNKKGEYG 249 (263)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---cCCCcEEEEEEcCCCCEE
Confidence 457999988887766653 34689999998877766643321 223446688889988753
No 62
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A.
Probab=37.37 E-value=90 Score=22.10 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=42.7
Q ss_pred eeEEEEEEEEeCCCCcEEEEECCCCceeee-CeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 029964 57 LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQ-PFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGG 135 (184)
Q Consensus 57 ~~vs~iiaG~D~~~gp~Ly~id~~G~~~~~-~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~ 135 (184)
..+++++.|+-...--.+|-..+.+.|... .+...|. +...-...++.||.+.|. + ++.|. -+..+.-
T Consensus 7 vFAgFlL~Gi~~SA~V~~~ic~~~~~c~~AG~F~vLGG-~~EMpW~FdRlykydIT~--~----l~~l~----l~~~~~f 75 (103)
T PF14830_consen 7 VFAGFLLHGIGTSADVKFYICKPDDDCHKAGTFFVLGG-EKEMPWAFDRLYKYDITD--A----LKKLG----LHYDDPF 75 (103)
T ss_dssp EEEEE--B--SS-EEEEEEEEESSSSEEEEEEEEE----TTS---B-SS-EEEE-HH--H----HHHCT------TTSSE
T ss_pred EEeeeeccCCCceEEEEEEEECCCCCceEccEEEEcCC-CccCccccCccchhhHHH--H----HHHcC----CCCCCCE
Confidence 567889999965323346666777888654 4555555 445556677888877532 2 11221 1133455
Q ss_pred eEEEEEEeCCCcEEEeecCCCC
Q 029964 136 VVRTVTINSEGVSRKFYPGDTL 157 (184)
Q Consensus 136 ~iev~iitkdg~~~~~~~~~~~ 157 (184)
.+++.+.+-+|.. ++.+-+
T Consensus 76 ~i~~~i~~~nGt~---l~~~~~ 94 (103)
T PF14830_consen 76 HIKVEITAVNGTE---LPSDIL 94 (103)
T ss_dssp EEEEEEEESSSSB---E-CCCS
T ss_pred EEEEEEEecCCCC---CccccC
Confidence 7889999999975 444444
No 63
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=36.76 E-value=81 Score=20.18 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 029964 19 SDYVRYFLHQHTIQLGQPATVKVAANLVRL 48 (184)
Q Consensus 19 ~~~lr~~~~~~~~~~~~~i~~~~la~~is~ 48 (184)
+++++........+.|+.++.+.+|..+.-
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgi 32 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGI 32 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcc
Confidence 456666677778899999999999987653
No 64
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=35.81 E-value=2e+02 Score=23.59 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=39.3
Q ss_pred CeEEEecChhhHHHHhhhh----hcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcE
Q 029964 87 PFAIGGSGSSYLYGFFDQA----WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVS 148 (184)
Q Consensus 87 ~~~a~G~gs~~a~~~Le~~----~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~ 148 (184)
-..++|.|..+++..+-.. .+.+++.++|.+-+++-+... .+...-+..++++|..
T Consensus 175 a~s~TG~GE~iir~~~a~~v~~~~~~g~~~~~A~~~~i~~~~~~------~~~~~G~Ia~d~~G~~ 234 (248)
T cd04512 175 AASTTGHGEAIIRTVLARRVVELMEQGMAAQAAAETAVEELGSL------KGGQGGVIAVDSKGEF 234 (248)
T ss_pred EEEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh------cCCeEEEEEEeCCCCE
Confidence 3567999998888777653 456799999988776665432 1234557788888864
No 65
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=34.27 E-value=98 Score=20.69 Aligned_cols=56 Identities=18% Similarity=0.130 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecC---CCCchhhhhcCChhhh
Q 029964 109 GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPG---DTLPLWHEELEPQNSL 170 (184)
Q Consensus 109 ~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~---~~~~~~~~~~~~~~~~ 170 (184)
.+|.+||.+.+++.|..... + +. --+.+++.+|... .-|. -+=..+|+-.|+.|.+
T Consensus 34 ~ls~eea~~~a~~~l~~~r~-~---~~-gY~fi~d~~g~~l-~hp~~p~~~G~n~~~~~D~~G~~ 92 (95)
T PF08269_consen 34 KLSEEEAQQQAREALRALRY-G---GD-GYFFIYDMDGVVL-AHPSNPELEGKNLSDLKDPNGKY 92 (95)
T ss_dssp -----TTHHHHHHHHHH--S-B---TT-B--EEE-TTSBEE-EESS-GGGTT-B-TT-B-TT--B
T ss_pred CccHHHHHHHHHHHHhcccc-C---CC-CeEEEEeCCCeEE-EcCCCcccCCcccccCCCCCCCE
Confidence 59999999999999987654 1 22 2378889999863 2222 2333456666766653
No 66
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=33.32 E-value=47 Score=17.88 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=17.4
Q ss_pred EEEEEEEEeCCCCcEEEEECCCCc
Q 029964 59 TGMIVGGWDKYEGGKIYGVPLGGT 82 (184)
Q Consensus 59 vs~iiaG~D~~~gp~Ly~id~~G~ 82 (184)
.+..+.|.-+ +.|.||.|-.+|.
T Consensus 4 N~~~v~G~rP-g~pfl~~IpatG~ 26 (29)
T PF10632_consen 4 NSPRVFGARP-GSPFLFTIPATGE 26 (29)
T ss_pred ccCcEEcccC-CCcEEEEeeccCc
Confidence 3455677777 6899999988874
No 67
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=33.14 E-value=85 Score=21.52 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=39.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCchhhhhc
Q 029964 107 KEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEEL 164 (184)
Q Consensus 107 ~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~~~~~~ 164 (184)
...++..|.+++.++-++.. .++.++-+..+...|-.+ .++.+|-|.++.-+
T Consensus 20 sS~~tt~eVI~~LL~KFkv~-----~~p~~FALy~vh~~Ge~r-kL~d~E~PL~~Rll 71 (87)
T cd01784 20 NSTMTTPQVLKLLLNKFKIE-----NSAEEFALYIVHTSGEKR-KLKATDYPLIARVL 71 (87)
T ss_pred ecCCCHHHHHHHHHHhcccc-----CCHHHeEEEEEeeCCCEE-ECCCcCCCeehhhh
Confidence 35788999999888888754 345678888888888754 58888888776543
No 68
>PF04485 NblA: Phycobilisome degradation protein nblA ; InterPro: IPR007574 In the cyanobacterium Synechococcus species PCC 7942 (P35087 from SWISSPROT), nblA triggers degradation of light-harvesting phycobiliproteins in response to deprivation nutrients including nitrogen, phosphorus and sulphur. The mechanism of nblA function is not known, but it has been hypothesised that nblA may act by disrupting phycobilisome structure, activating a protease or tagging phycobiliproteins for proteolysis. Members of this family have also been identified in the chloroplasts of some red algae.; PDB: 3CS5_D 1OJH_L 2QDO_B 2Q8V_A.
Probab=32.96 E-value=70 Score=19.82 Aligned_cols=23 Identities=17% Similarity=0.456 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhc
Q 029964 108 EGMTKEEAEQLVVKAVSLAIARD 130 (184)
Q Consensus 108 ~~~s~~eai~l~~~~l~~~~~rd 130 (184)
.+||.|+|.++.++.++..+-+|
T Consensus 20 ~~ls~Eqaq~~Lve~~rqmmike 42 (53)
T PF04485_consen 20 QKLSREQAQELLVELYRQMMIKE 42 (53)
T ss_dssp CTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999887665
No 69
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=31.40 E-value=2e+02 Score=23.79 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=39.0
Q ss_pred eEEEecChhhHHHHhhhh----hcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 88 FAIGGSGSSYLYGFFDQA----WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 88 ~~a~G~gs~~a~~~Le~~----~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
..++|.|..+++..+-.. .+.+++.+||.+.+++-+.... +...-+..|+++|..-
T Consensus 179 ~s~TG~GE~iir~~~a~~v~~~m~~g~s~~eA~~~~i~~~~~~~------~g~gG~Iavd~~G~~~ 238 (261)
T cd04702 179 VSTTGHGESIMKVVLARLILDHMEQGGSAQEAADKAIEYMTERV------KGTGGAIVLDSSGEVG 238 (261)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc------CCceEEEEEeCCCCEE
Confidence 567999998888777653 4568999999887776654322 2234567788888653
No 70
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=29.74 E-value=2.4e+02 Score=21.14 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=40.6
Q ss_pred EEE-EECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHH
Q 029964 73 KIY-GVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIA 128 (184)
Q Consensus 73 ~Ly-~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~ 128 (184)
.|| .+| .|.....+|-..|-+...+-+-+=-.+-++.|.+||+++.......+..
T Consensus 44 ~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~~ 99 (150)
T COG0822 44 TLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAKE 99 (150)
T ss_pred EEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 344 556 7888888888888887766666666677899999999998555554444
No 71
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=28.12 E-value=54 Score=22.16 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCchhhhhcCChhhhhhh
Q 029964 109 GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQNSLLDM 173 (184)
Q Consensus 109 ~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (184)
+.+.++..+.+.+.+.. . .+.|.+++.||-...+....+++.-++-..++|..+.|
T Consensus 21 ~~~~~~L~~ev~~rf~l-------~--~f~lKYlDde~e~v~lssd~eLeE~~rl~~~~~~~l~~ 76 (81)
T cd06396 21 NTTWASVEAMVKVSFGL-------N--DIQIKYVDEENEEVSVNSQGEYEEALKSAVRQGNLLQM 76 (81)
T ss_pred CCCHHHHHHHHHHHhCC-------C--cceeEEEcCCCCEEEEEchhhHHHHHHHHHhCCCEEEE
Confidence 45666766666555542 1 79999999999876667788888888888888877654
No 72
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=28.00 E-value=1e+02 Score=20.06 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=30.5
Q ss_pred ecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHh
Q 029964 92 GSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIAR 129 (184)
Q Consensus 92 G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~r 129 (184)
|+..+.+..+++..|+-+.+....-..+..+|+.+.+.
T Consensus 21 GsS~~aI~kyI~~~y~~~~~~~~~~~~l~~aLk~~v~~ 58 (77)
T PF00538_consen 21 GSSLQAIKKYIKAKYKVDLNPANFKSRLKRALKRGVEK 58 (77)
T ss_dssp SEEHHHHHHHHHHHSSCCCCHTTHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHC
Confidence 67788999999999976666656777888888888764
No 73
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=27.07 E-value=1.6e+02 Score=18.65 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=14.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHH
Q 029964 26 LHQHTIQLGQPATVKVAANLVR 47 (184)
Q Consensus 26 ~~~~~~~~~~~i~~~~la~~is 47 (184)
+..|...+|++++++.+|+.+.
T Consensus 15 I~~~~~~~G~~Pt~rEIa~~~g 36 (65)
T PF01726_consen 15 IREYIEENGYPPTVREIAEALG 36 (65)
T ss_dssp HHHHHHHHSS---HHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHhC
Confidence 4556678999999999988764
No 74
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.31 E-value=74 Score=25.00 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=23.5
Q ss_pred EEEEEEeCCCCcEEEEECCCCceeeeCeEEEecChhhHHHHhhhhhc
Q 029964 61 MIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWK 107 (184)
Q Consensus 61 ~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~ 107 (184)
.+|-|+|+ +.+|..||.|-- ....-.++|++.|.
T Consensus 151 v~itgyDk---~n~yynDpyG~k----------n~~~~~~~~e~g~n 184 (195)
T COG4990 151 VLITGYDK---YNIYYNDPYGYK----------NRKISHTYLEDGWN 184 (195)
T ss_pred eEeecccc---cceEeccccccc----------hhhhhHHHHHHHHh
Confidence 35678875 789999999632 24455677777775
No 75
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=25.18 E-value=2.3e+02 Score=20.23 Aligned_cols=63 Identities=21% Similarity=0.157 Sum_probs=42.5
Q ss_pred EeCCCCcEE---EEECCC-CceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHH
Q 029964 66 WDKYEGGKI---YGVPLG-GTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIA 128 (184)
Q Consensus 66 ~D~~~gp~L---y~id~~-G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~ 128 (184)
.++.-|-.+ ..+|.. |.....+|.+.|-+-..+-.-+=-.+-.+.+++||.++..+-+...+.
T Consensus 30 ~n~~CGD~i~i~l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 30 GNPSCGDEIRIYLKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EETTTTEEEEEEEEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred cCCCCCCEEEEEEEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 444335454 467887 788888999888875544444444455689999998887766665554
No 76
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=24.42 E-value=2.1e+02 Score=18.57 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEE-EEeCCCcEEEeecCCCCchhhhhcCC
Q 029964 108 EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTV-TINSEGVSRKFYPGDTLPLWHEELEP 166 (184)
Q Consensus 108 ~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~-iitkdg~~~~~~~~~~~~~~~~~~~~ 166 (184)
+..|..|.++.+++-+.. . .+...+.+. .....|.. +.|+++|-+..+-...+
T Consensus 25 ~~tTa~evi~~~l~k~~l--~---~~~~~y~L~~~~~~~~~e-r~L~~~E~pl~i~~~~~ 78 (93)
T PF00788_consen 25 SSTTAREVIEMALEKFGL--A---EDPSDYCLVEVEESGGEE-RPLDDDECPLQIQLQWP 78 (93)
T ss_dssp TTSBHHHHHHHHHHHTTT--S---SSGGGEEEEEEECTTTEE-EEETTTSBHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHhCC--C---CCCCCEEEEEEEcCCCEE-EEcCCCCchHHHHHhCc
Confidence 467888888888887764 2 234567776 44445554 57988888866544443
No 77
>PRK02487 hypothetical protein; Provisional
Probab=23.52 E-value=2.4e+02 Score=21.24 Aligned_cols=37 Identities=24% Similarity=0.126 Sum_probs=29.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcE
Q 029964 107 KEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVS 148 (184)
Q Consensus 107 ~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~ 148 (184)
.+.+|.++|.+++..+...+.++ +..+-|.|++ .|..
T Consensus 20 ~~~l~~~~A~~l~~~a~~~A~~~----g~~v~IaVv~-~G~~ 56 (163)
T PRK02487 20 FPHFDNDDAWQLGSLLVELARER----GLPIAIDITL-NGQP 56 (163)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEE-CCcE
Confidence 46899999999999999988764 3468888885 6654
No 78
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=23.49 E-value=97 Score=18.92 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeC
Q 029964 109 GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINS 144 (184)
Q Consensus 109 ~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitk 144 (184)
.-|.+||++.+++-|.. +.+.+++-||.+
T Consensus 4 gkt~eeAi~~A~~~l~~-------~~~~~~~eVi~~ 32 (52)
T PF14804_consen 4 GKTVEEAIEKALKELGV-------PREELEYEVIEE 32 (52)
T ss_dssp ESSHHHHHHHHHHHTT---------GGGEEEEEEE-
T ss_pred ECCHHHHHHHHHHHhCC-------ChHHEEEEEEEc
Confidence 35789999988887763 235678888876
No 79
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=23.44 E-value=1.9e+02 Score=22.74 Aligned_cols=38 Identities=16% Similarity=-0.015 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 029964 15 SQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYN 52 (184)
Q Consensus 15 ~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~ 52 (184)
++.+++++...+-......+....+-...|++|++++.
T Consensus 125 ARtv~RRAER~~V~l~~~~~~~~~~l~YlNRLSdlLF~ 162 (184)
T COG2096 125 ARTVARRAERRLVALSREEEANLVVLKYLNRLSDLLFV 162 (184)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 57888888888777666666666777789999999864
No 80
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=23.43 E-value=1.8e+02 Score=20.81 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCchh----hhhcCChhhh
Q 029964 108 EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLW----HEELEPQNSL 170 (184)
Q Consensus 108 ~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~~----~~~~~~~~~~ 170 (184)
..+|..|.+++.++-++.=.. ..+..++-+..+...|-.+ .|+.+|-|.+ |..-++.|+|
T Consensus 44 S~~tt~eVI~~LLeKFk~d~~--~~s~p~FALYevh~nGe~R-KL~d~E~PL~~RL~w~~~dre~~F 107 (112)
T cd01782 44 STATTRDVIDTLSEKFRPDMR--MLSNPTYSLYEVHENGEER-RLLDDEKPLVVQLNWHKDDREGRF 107 (112)
T ss_pred cCCCHHHHHHHHHHHhccccc--ccCCcceEEEEEecCCceE-EcCCcCCCeEEeeccCCCCceeEE
Confidence 467778888877777753211 1233478888888888764 4888887754 5555555555
No 81
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=23.20 E-value=1.9e+02 Score=17.72 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=25.2
Q ss_pred hHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHh
Q 029964 97 YLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIAR 129 (184)
Q Consensus 97 ~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~r 129 (184)
.+-.-+.+....+||..|||.++.+-|+.....
T Consensus 15 ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~~~~ 47 (51)
T PF03701_consen 15 QAVERIQELMAQGMSSGEAIAIVAQEIREEHQG 47 (51)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh
Confidence 344555666678999999999999999876543
No 82
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=23.11 E-value=2.3e+02 Score=20.23 Aligned_cols=34 Identities=9% Similarity=0.218 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 029964 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRL 48 (184)
Q Consensus 11 ~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~ 48 (184)
++.|-..+++.+|. |..+++..++++.+++.+..
T Consensus 39 LT~~HW~VI~~lR~----~y~e~~~~P~~R~l~K~~~~ 72 (109)
T PRK11508 39 LSPEHWEVVRFVRD----FYLEFNTSPAIRMLVKAMAN 72 (109)
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHH
Confidence 45677788888866 44668899999999998765
No 83
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=22.92 E-value=41 Score=23.06 Aligned_cols=29 Identities=7% Similarity=0.021 Sum_probs=23.6
Q ss_pred EEEEeCCCcEEEeecCCCCchhhhhcCCh
Q 029964 139 TVTINSEGVSRKFYPGDTLPLWHEELEPQ 167 (184)
Q Consensus 139 v~iitkdg~~~~~~~~~~~~~~~~~~~~~ 167 (184)
|.|.++++-.+++.++++|...|...+++
T Consensus 21 I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk 49 (87)
T smart00413 21 IRWTDRDGGEFKLVDPEEVARLWGQRKNK 49 (87)
T ss_pred EEeeCCCCCEEEecCHHHHHHHHhhhcCC
Confidence 89999865556789999999999877654
No 84
>TIGR00636 PduO_Nterm ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens.
Probab=22.80 E-value=1.8e+02 Score=22.42 Aligned_cols=38 Identities=16% Similarity=-0.016 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 029964 15 SQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYN 52 (184)
Q Consensus 15 ~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~ 52 (184)
++.+++++...+-......+....+-...|++|+++|.
T Consensus 117 aRtv~RRAER~~v~l~~~~~v~~~~l~ylNRLSD~lFv 154 (171)
T TIGR00636 117 ARTVARRAERRVVALLKEEEINEVVLVYLNRLSDLLFV 154 (171)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence 57778877666654432222334455679999999874
No 85
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=22.34 E-value=1.8e+02 Score=21.98 Aligned_cols=39 Identities=8% Similarity=-0.147 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 029964 14 DSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYN 52 (184)
Q Consensus 14 D~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~ 52 (184)
-++.+++++...+-...........+-...|++|+++|.
T Consensus 119 ~aRtv~RraER~~v~l~~~~~v~~~il~ylNRLSd~lfv 157 (163)
T PF01923_consen 119 VARTVCRRAERRAVRLFREEEVRPDILRYLNRLSDYLFV 157 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 356777777666655544444334445568889998763
No 86
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=22.18 E-value=2.7e+02 Score=19.82 Aligned_cols=35 Identities=9% Similarity=0.094 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 029964 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLL 49 (184)
Q Consensus 11 ~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~ 49 (184)
++.|-..+++.+|. |..+++..++++.+++.+...
T Consensus 38 LT~~Hw~vI~~lR~----~y~e~~~~P~~R~l~K~~~~~ 72 (108)
T TIGR03342 38 LTEAHWEVINFLRD----FYAEYNISPAVRMLVKAMGKK 72 (108)
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHH
Confidence 56677788888866 446778999999999887753
No 87
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=21.91 E-value=1.8e+02 Score=20.55 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCHHHH
Q 029964 15 SQTVSDYVRYFLHQHTIQLGQ-PATVKVA 42 (184)
Q Consensus 15 ~~~l~~~lr~~~~~~~~~~~~-~i~~~~l 42 (184)
|..+++.++.+++.|.+.+++ +++.+.+
T Consensus 49 c~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 49 CEAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 456888899999999998888 6666554
No 88
>KOG2449 consensus Methylmalonate semialdehyde dehydrogenase [Amino acid transport and metabolism; Carbohydrate transport and metabolism]
Probab=21.42 E-value=3.2e+02 Score=20.65 Aligned_cols=75 Identities=8% Similarity=0.008 Sum_probs=53.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHcCCCceeEEEEEEEEeCC--CCcEEEEECCCCceee
Q 029964 11 QAADSQTVSDYVRYFLHQHTIQLGQPATV--KVAANLVRLLSYNNKNFLQTGMIVGGWDKY--EGGKIYGVPLGGTIIE 85 (184)
Q Consensus 11 ~~aD~~~l~~~lr~~~~~~~~~~~~~i~~--~~la~~is~~~~~~r~p~~vs~iiaG~D~~--~gp~Ly~id~~G~~~~ 85 (184)
+.+|++.+...+...++.|+..-|..+.. .+.+.+|.+++++-..--++..-+-||.+. -||.+..+-|.=+++.
T Consensus 4 ~vg~aksW~~~lve~ak~l~v~~g~kp~tD~~a~~~ri~~liqS~~~~~~r~~yl~~ya~~~f~~~tiLsvtP~ms~yk 82 (157)
T KOG2449|consen 4 MVGAAKSWHPTLVEDAKVLKVNAGEKPQTDKYAPKVRIDKLIQSEDPLDGRFIYLPGYAEGNFVGPTILSVTPNMSCYK 82 (157)
T ss_pred EechhhhhhHHHHHhhhheEeccCCCCCccchhHHHHHHHHhcCcCccCCceEEeeccccCCcccceEEEecCCcceeH
Confidence 45789999999999999999888887644 445666777776532225666667777653 3677777777776663
No 89
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=21.33 E-value=2.3e+02 Score=19.23 Aligned_cols=39 Identities=15% Similarity=0.000 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEE
Q 029964 110 MTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRK 150 (184)
Q Consensus 110 ~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~ 150 (184)
.-.+|++.+|.-|+.+-- |-.+-++++|.+.+.++....
T Consensus 34 l~qqEvLnvA~MAvQT~Q--~~L~lNGv~V~v~~~~~~i~V 72 (82)
T PF11773_consen 34 LQQQEVLNVAQMAVQTGQ--DHLSLNGVEVQVERTQKGIIV 72 (82)
T ss_pred HHHHHHHHHHHHHHHhCc--ceEEEcCeEEEEEEcCCeEEE
Confidence 456799999999998743 445667799999988766543
No 90
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.23 E-value=2.6e+02 Score=19.05 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=22.8
Q ss_pred hhHHHHhhhhhcCCCCHHHHHHHHHHHHHHH
Q 029964 96 SYLYGFFDQAWKEGMTKEEAEQLVVKAVSLA 126 (184)
Q Consensus 96 ~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~ 126 (184)
..+..+|++...++.|+++.+++=.+++...
T Consensus 32 erakeiLe~LndpeisL~eSvkLYkeG~~lL 62 (86)
T PRK14065 32 HSLEQAIDRLNDPNLSLKDGMDLYKTAMQEL 62 (86)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3567778888888899988887766666543
No 91
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=21.20 E-value=41 Score=22.83 Aligned_cols=29 Identities=7% Similarity=-0.004 Sum_probs=24.8
Q ss_pred EEEEeCCCcEEEeecCCCCchhhhhcCCh
Q 029964 139 TVTINSEGVSRKFYPGDTLPLWHEELEPQ 167 (184)
Q Consensus 139 v~iitkdg~~~~~~~~~~~~~~~~~~~~~ 167 (184)
|.+.++++-.+++.+++++...|...+++
T Consensus 21 I~Wt~~~~~eFki~d~~~vA~lWG~~k~~ 49 (85)
T PF00178_consen 21 IAWTGKRGGEFKIVDPEAVARLWGKHKNR 49 (85)
T ss_dssp EEEEETSTTEEEESSHHHHHHHHHHHTTS
T ss_pred eEeeccCCCeEEecCHHHHHHHHHHHcCC
Confidence 89999777777889999999999887774
No 92
>KOG1930 consensus Focal adhesion protein Tensin, contains PTB domain [Signal transduction mechanisms; Cytoskeleton]
Probab=20.67 E-value=62 Score=28.70 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=13.0
Q ss_pred hcCCCCHHHHHHHHHH
Q 029964 106 WKEGMTKEEAEQLVVK 121 (184)
Q Consensus 106 ~~~~~s~~eai~l~~~ 121 (184)
||+++|.|+||.++++
T Consensus 215 YKP~isREQAIalLrd 230 (483)
T KOG1930|consen 215 YKPNISREQAIALLRD 230 (483)
T ss_pred cCCCCCHHHHHHHhhc
Confidence 6889999999876543
No 93
>PF11216 DUF3012: Protein of unknown function (DUF3012); InterPro: IPR021379 This family of proteins with unknown function is restricted to Gammaproteobacteria.
Probab=20.66 E-value=1.7e+02 Score=16.20 Aligned_cols=30 Identities=23% Similarity=0.169 Sum_probs=21.8
Q ss_pred ChhhHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 029964 94 GSSYLYGFFDQAWKEGMTKEEAEQLVVKAV 123 (184)
Q Consensus 94 gs~~a~~~Le~~~~~~~s~~eai~l~~~~l 123 (184)
||..=..-++..-+.+-|..||...++-|+
T Consensus 2 GSe~WC~~m~~kpK~dWtanea~~fAKhCv 31 (32)
T PF11216_consen 2 GSEAWCEDMKEKPKGDWTANEAADFAKHCV 31 (32)
T ss_pred ChHHHHHHHhhCCcccCcHhHHHHHHHhhc
Confidence 344444556666667899999999998875
No 94
>COG5469 Predicted metal-binding protein [Function unknown]
Probab=20.50 E-value=30 Score=25.79 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHH
Q 029964 12 AADSQTVSDYVRYFLHQHTIQLGQPA-TVKVAAN 44 (184)
Q Consensus 12 ~aD~~~l~~~lr~~~~~~~~~~~~~i-~~~~la~ 44 (184)
.+|.+.|.+++.+.++.....++-+| +|+.++.
T Consensus 38 p~~G~~Ll~kl~~l~qe~~~~~e~~I~~VeCl~~ 71 (143)
T COG5469 38 PSDGSILLDKLQELAQEWEIAHEFEIQTVECLAA 71 (143)
T ss_pred CCcHHHHHHHHHHHHhhhhhhccceeeeeHhhhh
Confidence 56889999999999998888877766 5555544
No 95
>PF15286 Bcl-2_3: Apoptosis regulator M11, B cell 2 leukaemia/lymphoma like; PDB: 3BL2_B 3DVU_B 2ABO_A.
Probab=20.32 E-value=1.7e+02 Score=20.98 Aligned_cols=42 Identities=14% Similarity=-0.039 Sum_probs=31.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHH
Q 029964 9 LFQAADSQTVSDYVRYFLHQHTIQLGQPATVK--VAANLVRLLS 50 (184)
Q Consensus 9 sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~--~la~~is~~~ 50 (184)
||..+|...++...++....|...++...++. .-.+-++.++
T Consensus 25 s~vL~DV~~i~~LTqeF~~~YdSVy~~d~~~a~~nW~~~l~~L~ 68 (126)
T PF15286_consen 25 SGVLADVSKIITLTQEFRTHYDSVYGKDYGPALSNWKNNLTALF 68 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSSTSGGGGTTHHHHHHHHH
T ss_pred hhHHHhHHHHHHHHHHHHHHHHHHhcccCChHHHHHHhhHHHHH
Confidence 88999999999999999999999998865553 2344444443
No 96
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=20.00 E-value=60 Score=20.50 Aligned_cols=13 Identities=0% Similarity=0.015 Sum_probs=8.5
Q ss_pred CcEEEEECCCCce
Q 029964 71 GGKIYGVPLGGTI 83 (184)
Q Consensus 71 gp~Ly~id~~G~~ 83 (184)
+.-||.+||+|.|
T Consensus 15 ~~ilfi~D~Se~C 27 (58)
T PF06858_consen 15 DAILFIIDPSEQC 27 (58)
T ss_dssp SEEEEEE-TT-TT
T ss_pred ceEEEEEcCCCCC
Confidence 4568999999976
Done!