Query 029964
Match_columns 184
No_of_seqs 114 out of 1100
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 09:57:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_H 20S proteasome; cell cy 100.0 1.2E-39 4.2E-44 257.1 19.7 162 2-164 40-201 (205)
2 3h4p_a Proteasome subunit beta 100.0 1.3E-39 4.6E-44 259.7 16.5 164 2-168 41-206 (219)
3 3unf_N Proteasome subunit beta 100.0 9.1E-39 3.1E-43 250.9 18.6 159 2-163 40-199 (199)
4 1j2q_H Proteasome beta subunit 100.0 8.9E-39 3E-43 251.7 18.4 160 2-165 40-201 (202)
5 3unf_H Proteasome subunit beta 100.0 1.8E-38 6E-43 255.7 19.7 165 2-170 40-204 (234)
6 1ryp_L 20S proteasome; multica 100.0 1.1E-38 3.7E-43 253.0 17.9 169 2-173 40-210 (212)
7 3nzj_K Proteasome component PR 100.0 1.1E-38 3.6E-43 263.8 17.6 170 2-174 115-286 (287)
8 1iru_L 20S proteasome; cell cy 100.0 3.7E-38 1.3E-42 248.5 19.7 161 2-166 40-201 (204)
9 1yar_H Proteasome beta subunit 100.0 4.7E-38 1.6E-42 250.4 18.1 159 2-165 48-208 (217)
10 1ryp_A 20S proteasome; multica 100.0 3.1E-38 1.1E-42 255.3 16.3 162 2-167 69-242 (243)
11 1iru_A 20S proteasome; cell cy 100.0 7.2E-38 2.5E-42 253.5 17.0 163 2-166 75-244 (246)
12 1ryp_H 20S proteasome; multica 100.0 4.4E-37 1.5E-41 242.6 20.6 156 2-163 49-204 (205)
13 1iru_M 20S proteasome; cell cy 100.0 1.1E-36 3.8E-41 241.5 22.1 153 2-155 49-211 (213)
14 1ryp_I 20S proteasome; multica 100.0 7.5E-37 2.6E-41 244.3 19.4 158 2-163 40-198 (222)
15 1ryp_K 20S proteasome; multica 100.0 8.8E-37 3E-41 239.5 19.3 147 2-149 41-191 (198)
16 1ryp_C 20S proteasome; multica 100.0 3.1E-37 1E-41 249.5 17.0 164 2-166 71-243 (244)
17 1ryp_E 20S proteasome; multica 100.0 2.1E-37 7E-42 250.3 15.6 163 2-167 65-238 (242)
18 1ryp_M 20S proteasome; multica 100.0 3.3E-36 1.1E-40 240.5 22.4 153 2-155 49-220 (222)
19 1ryp_N 20S proteasome; multica 100.0 2.7E-37 9.3E-42 248.3 15.9 163 2-167 48-225 (233)
20 1iru_C 20S proteasome; cell cy 100.0 3.1E-37 1.1E-41 252.0 15.6 164 2-166 71-242 (261)
21 1iru_N 20S proteasome; cell cy 100.0 6.1E-37 2.1E-41 244.0 16.8 161 2-166 48-214 (219)
22 1iru_B 20S proteasome; cell cy 100.0 5.9E-37 2E-41 246.3 16.2 158 2-164 70-232 (233)
23 1ryp_J 20S proteasome; multica 100.0 9.3E-36 3.2E-40 234.7 21.9 154 2-156 47-203 (204)
24 3h4p_A Proteasome subunit alph 100.0 1.3E-36 4.4E-41 248.8 17.4 162 2-167 77-243 (264)
25 1iru_J 20S proteasome; cell cy 100.0 7.9E-36 2.7E-40 235.3 21.3 154 2-156 48-204 (205)
26 3nzj_H Proteasome component PU 100.0 4.4E-36 1.5E-40 245.2 19.6 145 2-148 69-213 (261)
27 1iru_E 20S proteasome; cell cy 100.0 1.1E-36 3.8E-41 245.9 15.8 159 2-164 73-241 (241)
28 1yar_A Proteasome alpha subuni 100.0 1.6E-36 5.5E-41 243.7 16.6 155 2-160 73-232 (233)
29 1iru_I 20S proteasome; cell cy 100.0 3.7E-36 1.3E-40 242.1 18.3 158 2-163 40-197 (234)
30 1iru_F 20S proteasome; cell cy 100.0 3.2E-36 1.1E-40 246.3 17.3 161 2-165 69-237 (263)
31 1g0u_M Proteasome component PR 100.0 2E-36 6.7E-41 247.9 15.8 162 2-166 81-257 (266)
32 1q5q_H Proteasome beta-type su 100.0 5.5E-36 1.9E-40 241.1 17.9 162 2-166 40-219 (235)
33 1iru_G 20S proteasome; cell cy 100.0 2E-36 6.8E-41 246.3 15.4 161 2-164 72-239 (254)
34 1ryp_D 20S proteasome; multica 100.0 7.6E-36 2.6E-40 241.0 18.3 161 2-167 68-237 (241)
35 1iru_K 20S proteasome; cell cy 100.0 2.3E-35 8E-40 231.9 18.8 147 2-149 41-190 (201)
36 1ryp_F 20S proteasome; multica 100.0 7.1E-36 2.4E-40 240.1 16.2 156 2-161 68-233 (233)
37 1iru_D 20S proteasome; cell cy 100.0 4.6E-36 1.6E-40 243.3 15.2 162 2-168 68-236 (248)
38 3mi0_A Proteasome subunit alph 100.0 1.9E-35 6.5E-40 239.8 16.0 162 2-165 59-238 (248)
39 1j2p_A Alpha-ring, proteasome 100.0 3.6E-35 1.2E-39 237.8 17.1 159 2-165 73-237 (246)
40 1ryp_G 20S proteasome; multica 100.0 1.4E-34 4.9E-39 234.1 19.7 152 2-157 69-231 (244)
41 3nzj_F Proteasome component C1 100.0 4.8E-35 1.6E-39 242.1 16.9 155 2-158 73-237 (288)
42 1ryp_B 20S proteasome; multica 100.0 6.1E-35 2.1E-39 236.9 17.1 161 2-164 70-250 (250)
43 1q5r_H Proteasome beta-type su 100.0 1.1E-34 3.6E-39 240.6 17.4 162 2-166 105-284 (294)
44 1q5q_A Proteasome alpha-type s 100.0 8.8E-35 3E-39 237.3 13.7 166 2-169 59-240 (259)
45 2jay_A Proteasome; hydrolase; 100.0 2.9E-34 1E-38 237.7 14.9 164 2-168 97-278 (291)
46 1m4y_A ATP-dependent protease 99.9 1.9E-25 6.6E-30 171.3 14.6 126 2-142 41-171 (171)
47 1g3k_A ATP-dependent protease 99.9 4.3E-25 1.5E-29 169.9 15.0 127 2-143 41-173 (174)
48 2z3b_A ATP-dependent protease 99.9 4.1E-25 1.4E-29 171.0 14.7 126 2-142 47-179 (180)
49 3fpw_A HBPS, extracellular HAE 37.1 1.1E+02 0.0038 23.0 6.7 39 107-149 62-100 (192)
50 2a2l_A Unknown; structural gen 35.0 40 0.0014 24.0 3.8 38 108-149 10-47 (145)
51 1f32_A Major pepsin inhibitor 32.8 7.2 0.00025 28.1 -0.6 41 139-179 12-57 (149)
52 1ojh_A NBLA; degradation prote 32.3 45 0.0015 20.7 3.1 23 108-130 23-45 (65)
53 1sau_A Sulfite reductase, desu 32.0 1E+02 0.0034 21.3 5.2 33 11-47 46-78 (115)
54 2q8v_A NBLA protein; phycobili 31.6 47 0.0016 20.4 3.1 23 108-130 28-50 (63)
55 4gdv_A L-asparaginase; NTN enz 29.8 2.1E+02 0.0072 23.1 7.7 63 80-148 207-276 (310)
56 2lma_A THP5 peptide; CD4+, imm 29.4 17 0.00058 17.8 0.6 15 167-181 6-20 (26)
57 1p4k_A N(4)-(beta-N-acetylgluc 28.9 1.5E+02 0.005 23.9 6.5 70 80-149 189-267 (295)
58 4gof_A Small glutamine-rich te 27.7 68 0.0023 18.9 3.3 35 98-132 9-46 (52)
59 1qzv_F Plant photosystem I: su 25.0 1.3E+02 0.0045 21.3 4.8 60 14-76 10-73 (154)
60 1yx3_A Hypothetical protein DS 25.0 1.6E+02 0.0054 20.8 5.3 35 11-49 62-96 (132)
61 3fau_A NEDD4-binding protein 2 24.4 68 0.0023 20.1 3.1 39 109-147 7-45 (82)
62 2d9i_A NEDD4-binding protein 2 24.0 89 0.0031 20.2 3.8 39 109-147 15-53 (96)
63 1apy_B Aspartylglucosaminidase 23.5 1.7E+02 0.0059 20.8 5.4 58 87-149 48-109 (141)
64 2zhy_A ATP:COB(I)alamin adenos 21.4 1.7E+02 0.0057 21.7 5.2 38 15-52 124-161 (183)
65 4asv_A Small glutamine-rich te 20.1 84 0.0029 20.8 2.9 35 97-131 25-62 (92)
No 1
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1.2e-39 Score=257.12 Aligned_cols=162 Identities=46% Similarity=0.826 Sum_probs=156.5
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCCcEEEEECCCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGG 81 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r~p~~vs~iiaG~D~~~gp~Ly~id~~G 81 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+++++++|.++.||++++|+||||+++||+||.+||+|
T Consensus 40 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~~G 118 (205)
T 1iru_H 40 RIFCCR-SGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGG 118 (205)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTS
T ss_pred CEEEEc-CccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECCCC
Confidence 799999 9999999999999999999999999999999999999999999998899999999999986689999999999
Q ss_pred ceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCchhh
Q 029964 82 TIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWH 161 (184)
Q Consensus 82 ~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~~~ 161 (184)
++.++++.++|+|+++++++||+.|+++||.+||++++++||..+.+||..++++++|++|+++|++++.++++|++.|+
T Consensus 119 ~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~ 198 (205)
T 1iru_H 119 MMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFA 198 (205)
T ss_dssp CCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCC
T ss_pred cEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999977889999999999
Q ss_pred hhc
Q 029964 162 EEL 164 (184)
Q Consensus 162 ~~~ 164 (184)
++.
T Consensus 199 ~~~ 201 (205)
T 1iru_H 199 VAT 201 (205)
T ss_dssp CCC
T ss_pred hhc
Confidence 763
No 2
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.3e-39 Score=259.73 Aligned_cols=164 Identities=22% Similarity=0.344 Sum_probs=154.4
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-CceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r-~p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
||+|++ ||+.+|++.+++++|.+++.|+++++++++++.+|+++++++|.+| +||+|++||||||+.+||+||.+||+
T Consensus 41 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~ 119 (219)
T 3h4p_a 41 YIAMTI-AGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPL 119 (219)
T ss_dssp TEEEEC-CSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSS
T ss_pred CEEEEe-eEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCC
Confidence 799999 9999999999999999999999999999999999999999999874 69999999999998669999999999
Q ss_pred CceeeeC-eEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCch
Q 029964 81 GTIIEQP-FAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPL 159 (184)
Q Consensus 81 G~~~~~~-~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~ 159 (184)
|++.+++ +.|+|+|+++++++||+.|+++||++||++++++||..+.+||..++++++|++|+++|+++ ++++|++.
T Consensus 120 G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~--l~~~ei~~ 197 (219)
T 3h4p_a 120 GGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKI--FEDEEIEK 197 (219)
T ss_dssp CCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEE--CCHHHHHH
T ss_pred CceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEE--cCHHHHHH
Confidence 9999999 99999999999999999999999999999999999999999999999999999999998654 99999999
Q ss_pred hhhhcCChh
Q 029964 160 WHEELEPQN 168 (184)
Q Consensus 160 ~~~~~~~~~ 168 (184)
++++++...
T Consensus 198 ~l~~~~~~~ 206 (219)
T 3h4p_a 198 ILDSMKAKP 206 (219)
T ss_dssp HHHHCC---
T ss_pred HHHHhhccc
Confidence 998877543
No 3
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=9.1e-39 Score=250.94 Aligned_cols=159 Identities=45% Similarity=0.782 Sum_probs=151.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCCcEEEEECCCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGG 81 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r~p~~vs~iiaG~D~~~gp~Ly~id~~G 81 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+++++++|.+|+||+|++||||+|+++||+||. |+|
T Consensus 40 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~--p~G 116 (199)
T 3unf_N 40 RIFCAL-SGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYG--TMG 116 (199)
T ss_dssp TEEEEE-CSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHTTTTCCCCEEEEEEETTTEEEEEE--CGG
T ss_pred CEEEEe-cccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEE--ECC
Confidence 799999 99999999999999999999999999999999999999999999999999999999999867899999 999
Q ss_pred ceeee-CeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCchh
Q 029964 82 TIIEQ-PFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLW 160 (184)
Q Consensus 82 ~~~~~-~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~~ 160 (184)
++..+ .+.++|+|+++++++||+.|+++||++||++++++||..+.+||..++++++|++|+++|+.++.++++|+++|
T Consensus 117 ~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~ 196 (199)
T 3unf_N 117 GMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKF 196 (199)
T ss_dssp GCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCC
T ss_pred CceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccc
Confidence 97665 45567999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred hhh
Q 029964 161 HEE 163 (184)
Q Consensus 161 ~~~ 163 (184)
|++
T Consensus 197 ~~~ 199 (199)
T 3unf_N 197 YDE 199 (199)
T ss_dssp CCC
T ss_pred ccC
Confidence 874
No 4
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=8.9e-39 Score=251.66 Aligned_cols=160 Identities=24% Similarity=0.328 Sum_probs=152.7
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-CceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r-~p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
||+|++ ||..+|++.+++++|.+++.|++++++++|++.+|+++++++|.+| |||+|++|+||||+ +||+||.+||+
T Consensus 40 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~r~rp~~~~~lvaG~D~-~gp~Ly~id~~ 117 (202)
T 1j2q_H 40 RMAMTT-AGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSIDPI 117 (202)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEET-TEEEEEEECTT
T ss_pred CEEEEe-cccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEeC-CCCEEEEECCC
Confidence 799999 9999999999999999999999999999999999999999999875 69999999999998 58999999999
Q ss_pred CceeeeC-eEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCch
Q 029964 81 GTIIEQP-FAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPL 159 (184)
Q Consensus 81 G~~~~~~-~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~ 159 (184)
|++.+++ +.|+|+|+++++++||+.|+++||.+||++++++||..+.+||..++++++|++|+++|.+ .+++++++.
T Consensus 118 G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~--~l~~~ei~~ 195 (202)
T 1j2q_H 118 GGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFY--QYSPEEVEQ 195 (202)
T ss_dssp CCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEE--ECHHHHHHH
T ss_pred CCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeE--EeCHHHHHH
Confidence 9999999 9999999999999999999999999999999999999999999989999999999999854 499999999
Q ss_pred hhhhcC
Q 029964 160 WHEELE 165 (184)
Q Consensus 160 ~~~~~~ 165 (184)
++++++
T Consensus 196 ~~~~~~ 201 (202)
T 1j2q_H 196 ILAKFR 201 (202)
T ss_dssp HGGGTT
T ss_pred HHHHhh
Confidence 998763
No 5
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=1.8e-38 Score=255.73 Aligned_cols=165 Identities=23% Similarity=0.348 Sum_probs=156.1
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCCcEEEEECCCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGG 81 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r~p~~vs~iiaG~D~~~gp~Ly~id~~G 81 (184)
||+|++ ||..||++.+++++|.+++.|+++++++++++.+|+++++++|.+++||+|++||||+|++ ||+||.+||+|
T Consensus 40 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~p~~v~llvaG~D~~-gp~Ly~idp~G 117 (234)
T 3unf_H 40 KIYCCG-AGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLN-GPQLYEVHPHG 117 (234)
T ss_dssp TEEEEE-EESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETT-EEEEEEECTTS
T ss_pred CEEEEe-cccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhcCCCccEEEEEEEEeCC-CCEEEEECCCC
Confidence 799999 9999999999999999999999999999999999999999999999999999999999984 99999999999
Q ss_pred ceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCchhh
Q 029964 82 TIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWH 161 (184)
Q Consensus 82 ~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~~~ 161 (184)
++.++++.|+|+|+++++++||+.|+++||++||++++++||..+.++|..++++++|++|+++|++. +++.+++..|
T Consensus 118 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~--l~~~~i~~~~ 195 (234)
T 3unf_H 118 SYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKL--QRALSTPTEP 195 (234)
T ss_dssp CEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEE--EEEEECCCCC
T ss_pred CEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEE--eCceeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999764 8889999888
Q ss_pred hhcCChhhh
Q 029964 162 EELEPQNSL 170 (184)
Q Consensus 162 ~~~~~~~~~ 170 (184)
...+..-.|
T Consensus 196 ~~~~~~~~~ 204 (234)
T 3unf_H 196 VQRAGRYRF 204 (234)
T ss_dssp CCCCCCCCC
T ss_pred ccccccccC
Confidence 776654433
No 6
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1.1e-38 Score=253.02 Aligned_cols=169 Identities=24% Similarity=0.301 Sum_probs=156.4
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-CceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r-~p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+++++++|.++ .||+|++|+||||+++||+||.+||+
T Consensus 40 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~ 118 (212)
T 1ryp_L 40 FLLGTM-AGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSD 118 (212)
T ss_dssp TEEEEC-CBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETT
T ss_pred cEEEEc-cccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCC
Confidence 799999 9999999999999999999999999999999999999999999885 49999999999996569999999999
Q ss_pred CceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCchh
Q 029964 81 GTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLW 160 (184)
Q Consensus 81 G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~~ 160 (184)
|++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.+||..++++++|++|+++|.+ .+++++++.+
T Consensus 119 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~--~~~~~ei~~~ 196 (212)
T 1ryp_L 119 GTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWI--YHGNHDVGEL 196 (212)
T ss_dssp CCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEE--EEEEEEHHHH
T ss_pred ceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCceE--EECHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999855 3889999988
Q ss_pred h-hhcCChhhhhhh
Q 029964 161 H-EELEPQNSLLDM 173 (184)
Q Consensus 161 ~-~~~~~~~~~~~~ 173 (184)
+ +-.+.++++-||
T Consensus 197 ~~~~~~~~~~~~~~ 210 (212)
T 1ryp_L 197 FWKVKEEEGSFNNV 210 (212)
T ss_dssp HHHHHHHHCCCTTS
T ss_pred HHHHHHhhhhhccC
Confidence 4 555555555554
No 7
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=1.1e-38 Score=263.81 Aligned_cols=170 Identities=24% Similarity=0.289 Sum_probs=160.4
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-CceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r-~p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
||+|++ ||..||++.+.+++|.+++.|+++++++++++.+|+++++++|.+| .||++++||||||+.+||+||.+||+
T Consensus 115 ~i~~~~-aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~ 193 (287)
T 3nzj_K 115 FLLGTM-AGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSD 193 (287)
T ss_dssp TEEEEC-EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETT
T ss_pred cEEEEe-cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCC
Confidence 799999 9999999999999999999999999999999999999999999886 59999999999996679999999999
Q ss_pred CceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCchh
Q 029964 81 GTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLW 160 (184)
Q Consensus 81 G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~~ 160 (184)
|++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.+||..++++++|++|+++|+++ +++++++.+
T Consensus 194 G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~--l~~~ev~~~ 271 (287)
T 3nzj_K 194 GTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIY--HGNHDVGEL 271 (287)
T ss_dssp CCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE--EEEEEHHHH
T ss_pred ceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEE--eCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999654 888888765
Q ss_pred -hhhcCChhhhhhhc
Q 029964 161 -HEELEPQNSLLDMM 174 (184)
Q Consensus 161 -~~~~~~~~~~~~~~ 174 (184)
|+-.+.++||-||+
T Consensus 272 l~~~~e~~~~~~~~~ 286 (287)
T 3nzj_K 272 FWKVKEEEGSFNNVI 286 (287)
T ss_dssp HHHHHHHHCCCTTSC
T ss_pred HHHHHHhhccccccC
Confidence 67777789999874
No 8
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=3.7e-38 Score=248.46 Aligned_cols=161 Identities=26% Similarity=0.314 Sum_probs=153.8
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-CceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r-~p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
||+|++ ||..+|++.+.+++|.+++.|+++++++++++.+|+++++++|.+| +||+|++||||||+ +||+||.+||+
T Consensus 40 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~~~~~v~~lvaG~D~-~gp~Ly~idp~ 117 (204)
T 1iru_L 40 YLLGTM-AGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDSE 117 (204)
T ss_dssp TEEEEC-CBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTTSCCCBEEEEEEECS-SSEEEEEEESS
T ss_pred CEEEEc-cCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEEEEEeC-CCCEEEEECCC
Confidence 799999 9999999999999999999999999999999999999999999886 48999999999998 59999999999
Q ss_pred CceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCchh
Q 029964 81 GTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLW 160 (184)
Q Consensus 81 G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~~ 160 (184)
|++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.+||..++++++|++|+++|++ .++++|++.+
T Consensus 118 G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~--~l~~~ei~~~ 195 (204)
T 1iru_L 118 GNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWI--RVSSDNVADL 195 (204)
T ss_dssp SCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEE--EEEEEEHHHH
T ss_pred CcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCceE--EeCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999989999999999999965 4889999999
Q ss_pred hhhcCC
Q 029964 161 HEELEP 166 (184)
Q Consensus 161 ~~~~~~ 166 (184)
+++++.
T Consensus 196 ~~~~~~ 201 (204)
T 1iru_L 196 HEKYSG 201 (204)
T ss_dssp HHHHTC
T ss_pred HHHhcc
Confidence 988754
No 9
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=4.7e-38 Score=250.37 Aligned_cols=159 Identities=26% Similarity=0.389 Sum_probs=151.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-CceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r-~p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
||+|++ ||..+|++.+++++|.+++.|++++++++|++.+|+++++++|.+| |||+|++|+|||| + ||+||.+||+
T Consensus 48 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~-gp~Ly~idp~ 124 (217)
T 1yar_H 48 YTGMTI-AGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-T-APHVFSIDAA 124 (217)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-S-SEEEEEECTT
T ss_pred CEEEEe-CcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-C-CCEEEEECCC
Confidence 799999 9999999999999999999999999999999999999999999875 6999999999999 4 8999999999
Q ss_pred CceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeC-CCcEEEeecCCCCch
Q 029964 81 GTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINS-EGVSRKFYPGDTLPL 159 (184)
Q Consensus 81 G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitk-dg~~~~~~~~~~~~~ 159 (184)
|++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.+||..++++++|++|++ +|.+ .+++++++.
T Consensus 125 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~--~~~~~ei~~ 202 (217)
T 1yar_H 125 GGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYV--QLPTDQIES 202 (217)
T ss_dssp CCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEE--ECCHHHHHH
T ss_pred CCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEE--EcCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998999999999999 7754 489999999
Q ss_pred hhhhcC
Q 029964 160 WHEELE 165 (184)
Q Consensus 160 ~~~~~~ 165 (184)
+++++.
T Consensus 203 ~~~~~~ 208 (217)
T 1yar_H 203 RIRKLG 208 (217)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 987654
No 10
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=3.1e-38 Score=255.28 Aligned_cols=162 Identities=12% Similarity=0.068 Sum_probs=152.1
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH--HcC---CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLS--YNN---KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~--~~~---r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||+.+|++.+++++|.+++.|++++++++|++.+|+++++++ |.. .|||+|++||||||+.+||+||+
T Consensus 69 ~i~~~~-aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~ 147 (243)
T 1ryp_A 69 TIGMVV-NGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYK 147 (243)
T ss_dssp SCEEEE-ESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEE
T ss_pred CEEEEE-EecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEE
Confidence 799999 999999999999999999999999999999999999999999 433 47999999999999756999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcC-------CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKE-------GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~-------~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
+||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||..+.+|| .++++++|++|+++| .
T Consensus 148 ~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g--~ 224 (243)
T 1ryp_A 148 TDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDK--F 224 (243)
T ss_dssp ECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTE--E
T ss_pred EcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCC--e
Confidence 99999999999999999999999999999999 9999999999999999999999 679999999999999 3
Q ss_pred EeecCCCCchhhhhcCCh
Q 029964 150 KFYPGDTLPLWHEELEPQ 167 (184)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~ 167 (184)
+.+++++++.+++++.++
T Consensus 225 ~~l~~~ei~~~~~~~~~~ 242 (243)
T 1ryp_A 225 FTLSAENIEERLVAIAEQ 242 (243)
T ss_dssp EECCHHHHHHHHHHHTTT
T ss_pred EECCHHHHHHHHHHhhcc
Confidence 469999999999887553
No 11
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=7.2e-38 Score=253.55 Aligned_cols=163 Identities=17% Similarity=0.176 Sum_probs=153.5
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..||++.+++++|.+++.|+++++++++++.+|+++++++|.| .|||+|++||||||+.+||+||.
T Consensus 75 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~ 153 (246)
T 1iru_A 75 NIGCVM-TGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYK 153 (246)
T ss_dssp SCEEEE-EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEE
T ss_pred CEEEEE-eccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEE
Confidence 799999 999999999999999999999999999999999999999986432 47999999999999756999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcC--CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecC
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKE--GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPG 154 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~--~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~ 154 (184)
+||+|++.+++++|+|+|+++++++||+.|++ +||.+||++++++||..+.+|| .++++++|++|+++|+.++.+++
T Consensus 154 idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~ 232 (246)
T 1iru_A 154 CDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTE 232 (246)
T ss_dssp ECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCH
T ss_pred EcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCH
Confidence 99999999999999999999999999999999 9999999999999999999999 78999999999999986677999
Q ss_pred CCCchhhhhcCC
Q 029964 155 DTLPLWHEELEP 166 (184)
Q Consensus 155 ~~~~~~~~~~~~ 166 (184)
++++.+++++.+
T Consensus 233 ~ei~~~~~~~~~ 244 (246)
T 1iru_A 233 AEIDAHLVALAE 244 (246)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhc
Confidence 999999988754
No 12
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=4.4e-37 Score=242.56 Aligned_cols=156 Identities=40% Similarity=0.730 Sum_probs=148.9
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCCcEEEEECCCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGG 81 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r~p~~vs~iiaG~D~~~gp~Ly~id~~G 81 (184)
||+|++ ||..+|++.+++++|.+++.|++++++ ++++.+|+++++++|.+|..|++++|+||||+.+||+||.+||+|
T Consensus 49 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v~~la~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~~G 126 (205)
T 1ryp_H 49 KIWCCR-SGSAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGG 126 (205)
T ss_dssp TEEEEE-EEBHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTS
T ss_pred CEEEEc-cCCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECCCc
Confidence 799999 999999999999999999999999999 999999999999999987669999999999986689999999999
Q ss_pred ceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCchhh
Q 029964 82 TIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWH 161 (184)
Q Consensus 82 ~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~~~ 161 (184)
++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.+||..++++++|++|+++|++++.+ ++.|+
T Consensus 127 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~----~~~~~ 202 (205)
T 1ryp_H 127 SVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF----YPDEY 202 (205)
T ss_dssp CCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEE----CHHHH
T ss_pred cEEecCEEEEEecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEe----ccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987666 78887
Q ss_pred hh
Q 029964 162 EE 163 (184)
Q Consensus 162 ~~ 163 (184)
++
T Consensus 203 ~~ 204 (205)
T 1ryp_H 203 EQ 204 (205)
T ss_dssp TC
T ss_pred cc
Confidence 65
No 13
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.1e-36 Score=241.49 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=145.5
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-CceeEEEEEEEEeCCCCcEEEEECCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLG 80 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r-~p~~vs~iiaG~D~~~gp~Ly~id~~ 80 (184)
||+|++ ||..||++.+++++|.+++.|+++++++++++.+|+++++++|..| +||+|++||||||++++|+||.+||+
T Consensus 49 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~ 127 (213)
T 1iru_M 49 KTVIGC-SGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPV 127 (213)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTT
T ss_pred CEEEEc-cccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCC
Confidence 799999 9999999999999999999999999999999999999999998765 79999999999998767999999999
Q ss_pred CceeeeCeEEEecChhhHHHHhhhh---------hcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEe
Q 029964 81 GTIIEQPFAIGGSGSSYLYGFFDQA---------WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKF 151 (184)
Q Consensus 81 G~~~~~~~~a~G~gs~~a~~~Le~~---------~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~ 151 (184)
|++.++++.|+|+|+++++++||+. |+++||++||++++++||..+.++|..++++++|++|+++|++++.
T Consensus 128 G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~ 207 (213)
T 1iru_M 128 GSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREET 207 (213)
T ss_dssp SCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEE
T ss_pred CCEEECCEEEEeeCHHHHHHHHhhccccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEEE
Confidence 9999999999999999999999999 8889999999999999999999999999999999999999998776
Q ss_pred ecCC
Q 029964 152 YPGD 155 (184)
Q Consensus 152 ~~~~ 155 (184)
++..
T Consensus 208 ~~~r 211 (213)
T 1iru_M 208 VSLR 211 (213)
T ss_dssp EECC
T ss_pred eecC
Confidence 6544
No 14
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=7.5e-37 Score=244.26 Aligned_cols=158 Identities=23% Similarity=0.302 Sum_probs=147.3
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCCcEEEEECCCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGG 81 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r~p~~vs~iiaG~D~~~gp~Ly~id~~G 81 (184)
||+|++ ||..||++.+++++|.+++.|+++++++++++.+++++++.+|.+++||++++||||+|+ +||+||.+||+|
T Consensus 40 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~~p~~v~~lvaG~D~-~gp~Ly~idp~G 117 (222)
T 1ryp_I 40 KIWCAG-AGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHAHG 117 (222)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTS
T ss_pred CEEEEe-cccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCCCeeEEEEEEeC-CCCEEEEECCCC
Confidence 799999 999999999999999999999999999999999999999999999999999999999998 589999999999
Q ss_pred ceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCC-cEEEeecCCCCchh
Q 029964 82 TIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEG-VSRKFYPGDTLPLW 160 (184)
Q Consensus 82 ~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg-~~~~~~~~~~~~~~ 160 (184)
++.++++.|+|+|+++++++||+.|+++||++||++++++||..+.+||..++++++|++|+++| ++. +.+.+++.-
T Consensus 118 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~--~~~~~~~~~ 195 (222)
T 1ryp_I 118 STDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEY--LRNYLTPNV 195 (222)
T ss_dssp CEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEE--EEEEECCCC
T ss_pred CEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCEEE--EeceecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 653 334444444
Q ss_pred hhh
Q 029964 161 HEE 163 (184)
Q Consensus 161 ~~~ 163 (184)
|..
T Consensus 196 ~~~ 198 (222)
T 1ryp_I 196 REE 198 (222)
T ss_dssp CCC
T ss_pred ccc
Confidence 544
No 15
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=8.8e-37 Score=239.46 Aligned_cols=147 Identities=19% Similarity=0.285 Sum_probs=141.1
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC---CCceeEEEEEEEEeC-CCCcEEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN---KNFLQTGMIVGGWDK-YEGGKIYGV 77 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~---r~p~~vs~iiaG~D~-~~gp~Ly~i 77 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+++++.+|.+ |+||+|++|+||||+ ++||+||.+
T Consensus 41 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~i 119 (198)
T 1ryp_K 41 HTLMSF-AGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQI 119 (198)
T ss_dssp TEEEEE-EESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEE
T ss_pred CEEEEe-ccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEE
Confidence 799999 999999999999999999999999999999999999999999876 359999999999997 469999999
Q ss_pred CCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 78 PLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 78 d~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
||+|++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.+||..++++++|++|+++|+++
T Consensus 120 dp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 191 (198)
T 1ryp_K 120 DYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQ 191 (198)
T ss_dssp CTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEE
T ss_pred CCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998764
No 16
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=3.1e-37 Score=249.51 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=153.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+++++++|.+ +|||+|++||||||+++||+||.
T Consensus 71 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~ 149 (244)
T 1ryp_C 71 KIAVAV-AGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYT 149 (244)
T ss_dssp SEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEE
T ss_pred CEEEEE-EEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEE
Confidence 799999 999999999999999999999999999999999999999999653 47999999999999446999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEe--CCCcE--EEee
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN--SEGVS--RKFY 152 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iit--kdg~~--~~~~ 152 (184)
+||+|++.++++.|+|+|+++++++||+.|+++||++||++++++||..+.+||..++++++|++|+ ++|.. ++.+
T Consensus 150 idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l 229 (244)
T 1ryp_C 150 SNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIF 229 (244)
T ss_dssp ECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEEC
T ss_pred ECCCccEEeeeEEEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEEC
Confidence 9999999999999999999999999999999999999999999999999999966679999999999 99873 5679
Q ss_pred cCCCCchhhhhcCC
Q 029964 153 PGDTLPLWHEELEP 166 (184)
Q Consensus 153 ~~~~~~~~~~~~~~ 166 (184)
+++|++.++++++.
T Consensus 230 ~~~ei~~~~~~~~~ 243 (244)
T 1ryp_C 230 KPQEIKDILVKTGI 243 (244)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhc
Confidence 99999999987753
No 17
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=2.1e-37 Score=250.25 Aligned_cols=163 Identities=19% Similarity=0.228 Sum_probs=152.8
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----------CCceeEEEEEEEEeCCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----------KNFLQTGMIVGGWDKYE 70 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----------r~p~~vs~iiaG~D~~~ 70 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+++++++|.+ +|||+|++||||||+.+
T Consensus 65 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~ 143 (242)
T 1ryp_E 65 HIGCAM-SGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADD 143 (242)
T ss_dssp TEEEEE-EESGGGHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTT
T ss_pred CEEEEE-eecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCC
Confidence 799999 999999999999999999999999999999999999999998864 56999999999999556
Q ss_pred CcEEEEECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEE
Q 029964 71 GGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRK 150 (184)
Q Consensus 71 gp~Ly~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~ 150 (184)
||+||.+||+|++.++++.|+|+|+++++++||+.|+++||++||++++++||..+.+| ..++++++|++|+++|. ++
T Consensus 144 gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~-~~ 221 (242)
T 1ryp_E 144 GYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDG-FK 221 (242)
T ss_dssp EEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTE-EE
T ss_pred CCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCC-eE
Confidence 99999999999999999999999999999999999999999999999999999999999 66789999999999998 45
Q ss_pred eecCCCCchhhhhcCCh
Q 029964 151 FYPGDTLPLWHEELEPQ 167 (184)
Q Consensus 151 ~~~~~~~~~~~~~~~~~ 167 (184)
.+++++++.+++++..+
T Consensus 222 ~~~~~ei~~~~~~~~~~ 238 (242)
T 1ryp_E 222 IYDNEKTAELIKELKEK 238 (242)
T ss_dssp ECCHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHhhh
Confidence 69999999999877543
No 18
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=3.3e-36 Score=240.47 Aligned_cols=153 Identities=20% Similarity=0.255 Sum_probs=145.6
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHcCC-CceeEEEEEEEEeCCCCcEEEEECC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLG-QPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPL 79 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~-~~i~~~~la~~is~~~~~~r-~p~~vs~iiaG~D~~~gp~Ly~id~ 79 (184)
||+|++ ||..||++.+++++|.+++.|+++++ ++++++.+|+++++.+|.+| +||+|++||||||++++|+||.+||
T Consensus 49 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp 127 (222)
T 1ryp_M 49 NIVMSA-NGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDP 127 (222)
T ss_dssp TEEEEE-EESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECT
T ss_pred CEEEEc-cccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECC
Confidence 799999 99999999999999999999999999 99999999999999999875 6999999999999876799999999
Q ss_pred CCceeeeCeEEEecChhhHHHHhhhh-----------------hcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Q 029964 80 GGTIIEQPFAIGGSGSSYLYGFFDQA-----------------WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 142 (184)
Q Consensus 80 ~G~~~~~~~~a~G~gs~~a~~~Le~~-----------------~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~ii 142 (184)
+|++.++++.|+|+|+++++++||+. |+++||.+||++++++||..+.+||..++++++|++|
T Consensus 128 ~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi 207 (222)
T 1ryp_M 128 VGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIV 207 (222)
T ss_dssp TSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEE
T ss_pred CcCEEecCEEEEcCcHHHHHHHHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEE
Confidence 99999999999999999999999998 8899999999999999999999999999999999999
Q ss_pred eCCCcEEEeecCC
Q 029964 143 NSEGVSRKFYPGD 155 (184)
Q Consensus 143 tkdg~~~~~~~~~ 155 (184)
+++|++++.++..
T Consensus 208 ~~~g~~~~~~~~r 220 (222)
T 1ryp_M 208 TKDGVRKEFYELK 220 (222)
T ss_dssp ETTEEEEEEEECC
T ss_pred cCCCeEEEEeecc
Confidence 9999987766554
No 19
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=2.7e-37 Score=248.34 Aligned_cols=163 Identities=16% Similarity=0.147 Sum_probs=152.9
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHH-----HhCCCCCHHHHHHHHHHHHHcCC---CceeEEEEEEEEeCCCCcE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTI-----QLGQPATVKVAANLVRLLSYNNK---NFLQTGMIVGGWDKYEGGK 73 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~-----~~~~~i~~~~la~~is~~~~~~r---~p~~vs~iiaG~D~~~gp~ 73 (184)
||+|++ ||..+|++.+++++|.+++.|++ +++++++++.+|+++++++|.+| +||+|++||||||+++||+
T Consensus 48 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~ 126 (233)
T 1ryp_N 48 NTVVGI-SGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQF 126 (233)
T ss_dssp TEEEEE-EEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEE
T ss_pred CEEEEc-cccHHHHHHHHHHHHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEE
Confidence 799999 99999999999999999999999 99999999999999999998754 7999999999999866999
Q ss_pred EEEECCCCceeeeCeEEEecChhhHHHHhhhhhcC-----CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCC-Cc
Q 029964 74 IYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKE-----GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSE-GV 147 (184)
Q Consensus 74 Ly~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~-----~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkd-g~ 147 (184)
||.+||+|++.++++.|+|+|+++++++||+.|++ +||++||++++++||..+.+||..++++++|++|+++ |+
T Consensus 127 Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~ 206 (233)
T 1ryp_N 127 LRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGL 206 (233)
T ss_dssp EEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEE
T ss_pred EEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCe
Confidence 99999999999999999999999999999999999 9999999999999999999999999999999999999 76
Q ss_pred EEEeecCCCCchh-hhhcCCh
Q 029964 148 SRKFYPGDTLPLW-HEELEPQ 167 (184)
Q Consensus 148 ~~~~~~~~~~~~~-~~~~~~~ 167 (184)
+ .+++++++.+ |+..+..
T Consensus 207 ~--~~~~~~i~~~~w~~~~~~ 225 (233)
T 1ryp_N 207 T--FKKNLQVENMKWDFAKDI 225 (233)
T ss_dssp E--EEEEEECCSCCCGGGGGC
T ss_pred E--EcChHhcccccchhhhhc
Confidence 5 4888899998 8665543
No 20
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=3.1e-37 Score=251.97 Aligned_cols=164 Identities=17% Similarity=0.203 Sum_probs=154.7
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..+|++.+++++|.+++.|++++++++|++.+|+++++++|.+ +|||+|++||||||+.+||+||.
T Consensus 71 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~ 149 (261)
T 1iru_C 71 DMACSV-AGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQ 149 (261)
T ss_dssp SEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEE
T ss_pred CEEEEE-eEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEE
Confidence 799999 999999999999999999999999999999999999999999865 36999999999999756999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcC-CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcE--EEeec
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKE-GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVS--RKFYP 153 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~-~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~--~~~~~ 153 (184)
+||+|++.++++.|+|+|+++++++||+.|++ +||.+||++++++||..+.++|..++++++|++|+++|.. .+.++
T Consensus 150 idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~ 229 (261)
T 1iru_C 150 SDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLK 229 (261)
T ss_dssp EETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECC
T ss_pred ECCCceEEeeeeEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECC
Confidence 99999999999999999999999999999999 9999999999999999999999999999999999999863 45699
Q ss_pred CCCCchhhhhcCC
Q 029964 154 GDTLPLWHEELEP 166 (184)
Q Consensus 154 ~~~~~~~~~~~~~ 166 (184)
++|++.+++++.+
T Consensus 230 ~~ei~~~l~~~~~ 242 (261)
T 1iru_C 230 QKEVEQLIKKHEE 242 (261)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987744
No 21
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=6.1e-37 Score=244.03 Aligned_cols=161 Identities=17% Similarity=0.141 Sum_probs=151.4
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHcC---CCceeEEEEEEEEeCCCCcEEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTI-QLGQPATVKVAANLVRLLSYNN---KNFLQTGMIVGGWDKYEGGKIYGV 77 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~-~~~~~i~~~~la~~is~~~~~~---r~p~~vs~iiaG~D~~~gp~Ly~i 77 (184)
||+|++ ||..+|++.+++++|.+++.|++ +++++++++.+|+++++++|.+ .|||+|++||||+|+. ||+||.+
T Consensus 48 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~-gp~Ly~i 125 (219)
T 1iru_N 48 STMLGA-SGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADG-ESFLGYV 125 (219)
T ss_dssp TEEEEE-EEEHHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETT-EEEEEEE
T ss_pred CEEEEe-ccCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECC-CCEEEEE
Confidence 799999 99999999999999999999998 9999999999999999999865 4799999999999984 9999999
Q ss_pred CCCCceeeeCeEEEecChhhHHHHhhhhhcC--CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCC
Q 029964 78 PLGGTIIEQPFAIGGSGSSYLYGFFDQAWKE--GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGD 155 (184)
Q Consensus 78 d~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~--~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~ 155 (184)
||+|++.++++.|+|+|+++++++||+.|++ +||.+||++++++||..+.+||..++++++|++|+++|++ .++++
T Consensus 126 d~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~--~~~~~ 203 (219)
T 1iru_N 126 DMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVE--IEGPL 203 (219)
T ss_dssp CSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEE--EEEEE
T ss_pred CCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEE--EcCCe
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999999954 48889
Q ss_pred CCchhhhhcCC
Q 029964 156 TLPLWHEELEP 166 (184)
Q Consensus 156 ~~~~~~~~~~~ 166 (184)
+++..|+..+-
T Consensus 204 ~i~~~~~~~~~ 214 (219)
T 1iru_N 204 STETNWDIAHM 214 (219)
T ss_dssp CCCCCCGGGGC
T ss_pred eccchhhHHHh
Confidence 99988865543
No 22
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=5.9e-37 Score=246.28 Aligned_cols=158 Identities=10% Similarity=0.134 Sum_probs=149.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+++++++|.| .|||+|++||||||+ +||+||.
T Consensus 70 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~ 147 (233)
T 1iru_B 70 HIGLVY-SGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQ 147 (233)
T ss_dssp SEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEE
T ss_pred CEEEEE-EEccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEE
Confidence 799999 999999999999999999999999999999999999999999654 369999999999996 5899999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCC
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDT 156 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~ 156 (184)
+||+|++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.+|| .++++++|++|+++|. +.++++|
T Consensus 148 id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~--~~l~~~e 224 (233)
T 1iru_B 148 SDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGF--RRLTPTE 224 (233)
T ss_dssp ECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEE--EECCHHH
T ss_pred ECCCCCEEEeeEEEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCE--EECCHHH
Confidence 999999999999999999999999999999999999999999999999999999 6689999999999994 4589999
Q ss_pred Cchhhhhc
Q 029964 157 LPLWHEEL 164 (184)
Q Consensus 157 ~~~~~~~~ 164 (184)
++.+++++
T Consensus 225 i~~~~~~~ 232 (233)
T 1iru_B 225 VKDYLAAI 232 (233)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhc
Confidence 99998764
No 23
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=9.3e-36 Score=234.71 Aligned_cols=154 Identities=20% Similarity=0.236 Sum_probs=144.6
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-CceeEEEEEEEEeC-CCCcEEEEECC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDK-YEGGKIYGVPL 79 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r-~p~~vs~iiaG~D~-~~gp~Ly~id~ 79 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+++++++|.+| .||+|++||||||+ ++||+||.+||
T Consensus 47 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp 125 (204)
T 1ryp_J 47 HVFLGI-TGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDL 125 (204)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECT
T ss_pred CEEEEe-eEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECC
Confidence 799999 9999999999999999999999999999999999999999998765 49999999999996 46899999999
Q ss_pred CCceeee-CeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCC
Q 029964 80 GGTIIEQ-PFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDT 156 (184)
Q Consensus 80 ~G~~~~~-~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~ 156 (184)
+|++.++ .+.|+|+|+++++++||+.|+++||++||++++++||..+.+||..++++++|++|+++|++++.++...
T Consensus 126 ~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~ 203 (204)
T 1ryp_J 126 IGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQ 203 (204)
T ss_dssp TCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEECCCC
T ss_pred CCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEeecCC
Confidence 9999665 6799999999999999999999999999999999999999999999999999999999999887776543
No 24
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.3e-36 Score=248.81 Aligned_cols=162 Identities=15% Similarity=0.237 Sum_probs=152.5
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||+.||++.+++++|.+++.|+++++++++++.+|+++++++|.+ .|||+|++||||||+ +||+||.
T Consensus 77 ~i~~~~-aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~ 154 (264)
T 3h4p_A 77 HVAAAT-SGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFE 154 (264)
T ss_dssp TEEEEE-EECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEE
T ss_pred cEEEEe-ccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEE
Confidence 799999 999999999999999999999999999999999999999998765 369999999999997 5999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCC
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDT 156 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~ 156 (184)
+||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||..+.++ .++++++|++|++++..++.+++++
T Consensus 155 iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~~e 232 (264)
T 3h4p_A 155 TDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPVEE 232 (264)
T ss_dssp ECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCTTT
T ss_pred ECCCceEEecCeEEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCHHH
Confidence 99999999999999999999999999999999999999999999999999987 6889999999999877677899999
Q ss_pred CchhhhhcCCh
Q 029964 157 LPLWHEELEPQ 167 (184)
Q Consensus 157 ~~~~~~~~~~~ 167 (184)
++.+++++...
T Consensus 233 i~~~~~~~~~~ 243 (264)
T 3h4p_A 233 IKKLIEKVKKK 243 (264)
T ss_dssp TGGGTTTTTTS
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 25
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=7.9e-36 Score=235.28 Aligned_cols=154 Identities=19% Similarity=0.256 Sum_probs=144.6
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-CceeEEEEEEEEeC-CCCcEEEEECC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDK-YEGGKIYGVPL 79 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r-~p~~vs~iiaG~D~-~~gp~Ly~id~ 79 (184)
||+|++ ||..||++.+++++|.+++.|+++++++++++.+|+++++++|.+| .||+|++|+||||+ ++||+||.+||
T Consensus 48 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp 126 (205)
T 1iru_J 48 RLYIGL-AGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDL 126 (205)
T ss_dssp TEEEEC-CSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECT
T ss_pred CEEEEc-cccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECC
Confidence 799999 9999999999999999999999999999999999999999998865 49999999999996 46999999999
Q ss_pred CCceeee-CeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCC
Q 029964 80 GGTIIEQ-PFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDT 156 (184)
Q Consensus 80 ~G~~~~~-~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~ 156 (184)
+|++.++ .+.|+|+|+++++++||+.|+++||++||++++++||..+.+||..++++++|++|+++|++++.++...
T Consensus 127 ~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~ 204 (205)
T 1iru_J 127 IGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARM 204 (205)
T ss_dssp TCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBCCCC
T ss_pred CCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEeecCC
Confidence 9999665 6699999999999999999999999999999999999999999999999999999999999887776543
No 26
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=4.4e-36 Score=245.20 Aligned_cols=145 Identities=23% Similarity=0.315 Sum_probs=141.3
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCCcEEEEECCCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGG 81 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r~p~~vs~iiaG~D~~~gp~Ly~id~~G 81 (184)
||+|++ ||..||++.+++++|.+++.|+++++++++++.+++++++.+|.+++||++++||||||++ ||+||.+||+|
T Consensus 69 ~i~~~~-aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D~~-Gp~Ly~iDp~G 146 (261)
T 3nzj_H 69 KIWCAG-AGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPT-GSHLFSIHAHG 146 (261)
T ss_dssp TEEEEE-EESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETT-EEEEEEECTTS
T ss_pred CEEEEe-ccCHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHhcCcccEEEEEEEEeCC-CCEEEEECCCc
Confidence 799999 9999999999999999999999999999999999999999999999999999999999984 89999999999
Q ss_pred ceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcE
Q 029964 82 TIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVS 148 (184)
Q Consensus 82 ~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~ 148 (184)
++.++++.|+|+|+++++++||+.|+++||++||++++++||..+.+||..++++++|++|+++|+.
T Consensus 147 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~ 213 (261)
T 3nzj_H 147 STDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDA 213 (261)
T ss_dssp CEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCE
T ss_pred cEEecCeEEeccchHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999999954
No 27
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=1.1e-36 Score=245.86 Aligned_cols=159 Identities=17% Similarity=0.215 Sum_probs=149.7
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC----------CCceeEEEEEEEEeCCCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN----------KNFLQTGMIVGGWDKYEG 71 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~----------r~p~~vs~iiaG~D~~~g 71 (184)
||+|++ ||..||++.+++++|.+++.|+++++++++++.+|+++++++|.+ +|||+|++||||||+ +|
T Consensus 73 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~g 150 (241)
T 1iru_E 73 HIGCAM-SGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KG 150 (241)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TE
T ss_pred CEEEEE-eeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CC
Confidence 799999 999999999999999999999999999999999999999998654 469999999999995 69
Q ss_pred cEEEEECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEe
Q 029964 72 GKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKF 151 (184)
Q Consensus 72 p~Ly~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~ 151 (184)
|+||.+||+|++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.+| ..++++++|++|+++|+ ++.
T Consensus 151 p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~-~~~ 228 (241)
T 1iru_E 151 PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQN-FHM 228 (241)
T ss_dssp EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSC-CEE
T ss_pred CEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCC-eEE
Confidence 9999999999999999999999999999999999999999999999999999999999 66799999999999998 456
Q ss_pred ecCCCCchhhhhc
Q 029964 152 YPGDTLPLWHEEL 164 (184)
Q Consensus 152 ~~~~~~~~~~~~~ 164 (184)
++++|++.+++++
T Consensus 229 l~~~ei~~~~~~~ 241 (241)
T 1iru_E 229 FTKEELEEVIKDI 241 (241)
T ss_dssp CCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHhC
Confidence 9999999988753
No 28
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.6e-36 Score=243.74 Aligned_cols=155 Identities=18% Similarity=0.258 Sum_probs=145.9
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+++++++|.+ +|||+|++||||||+ +||+||.
T Consensus 73 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~ 150 (233)
T 1yar_A 73 YVAAVT-SGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFD 150 (233)
T ss_dssp TEEEEE-EEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEE
T ss_pred CEEEEE-eeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEE
Confidence 799999 999999999999999999999999999999999999999999865 369999999999998 5999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCC
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDT 156 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~ 156 (184)
+||+|++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.++|. ++++++|++|+++|.. +.++++|
T Consensus 151 id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~-~~~~~~e 228 (233)
T 1yar_A 151 CDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKY-RIYDQEE 228 (233)
T ss_dssp ECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCC-EECCHHH
T ss_pred ECCCCCEEeeeEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCE-EECCHHH
Confidence 9999999999999999999999999999999999999999999999999999998 6899999999999953 4588887
Q ss_pred Cchh
Q 029964 157 LPLW 160 (184)
Q Consensus 157 ~~~~ 160 (184)
++.+
T Consensus 229 i~~~ 232 (233)
T 1yar_A 229 VKKF 232 (233)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 7665
No 29
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=3.7e-36 Score=242.07 Aligned_cols=158 Identities=23% Similarity=0.387 Sum_probs=147.3
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCCcEEEEECCCC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGG 81 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r~p~~vs~iiaG~D~~~gp~Ly~id~~G 81 (184)
||+|++ ||..||++.+++++|.+++.|+++++++++++.+++++++.+|.+++||++++||||||+ +||+||.+||+|
T Consensus 40 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~~~v~llvaG~D~-~gp~Ly~idp~G 117 (234)
T 1iru_I 40 NIYCCG-AGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDV-TGPHLYSIYPHG 117 (234)
T ss_dssp TEEEEE-EESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEECS-SCEEEEEECTTS
T ss_pred CEEEEe-cCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceeEEEEEEcC-CCCEEEEECCCC
Confidence 799999 999999999999999999999999999999999999999999999999999999999998 589999999999
Q ss_pred ceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecCCCCchhh
Q 029964 82 TIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWH 161 (184)
Q Consensus 82 ~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~~~~~~~~ 161 (184)
++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.++|..++++++|++|+++|++. +.+.+++.-|
T Consensus 118 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~--~~~~~~~~~~ 195 (234)
T 1iru_I 118 STDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDF--LRPYTVPNKK 195 (234)
T ss_dssp CEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEEC--CSEEECCCCC
T ss_pred CEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCcEEE--EcceecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999753 4444444445
Q ss_pred hh
Q 029964 162 EE 163 (184)
Q Consensus 162 ~~ 163 (184)
..
T Consensus 196 ~~ 197 (234)
T 1iru_I 196 GT 197 (234)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 30
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=3.2e-36 Score=246.34 Aligned_cols=161 Identities=14% Similarity=0.175 Sum_probs=151.7
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+++++++|.+ +|||+|++||||||+ +||+||.
T Consensus 69 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~ 146 (263)
T 1iru_F 69 HIGISI-AGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQ 146 (263)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEE
T ss_pred CEEEEE-eCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEE
Confidence 799999 999999999999999999999999999999999999999999743 579999999999998 5899999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcC--CCCHHHHHHHHHHHHHHHHHhc-CCCCCeEEEEEEeCCCcEEEeec
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKE--GMTKEEAEQLVVKAVSLAIARD-GASGGVVRTVTINSEGVSRKFYP 153 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~--~~s~~eai~l~~~~l~~~~~rd-~~s~~~iev~iitkdg~~~~~~~ 153 (184)
+||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||..+.+|| ..++++++|++|++++.. +.++
T Consensus 147 idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~-~~l~ 225 (263)
T 1iru_F 147 TCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEF-TIYD 225 (263)
T ss_dssp ECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEE-EEEC
T ss_pred ECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCe-EECC
Confidence 99999999999999999999999999999998 9999999999999999999999 478899999999999543 4699
Q ss_pred CCCCchhhhhcC
Q 029964 154 GDTLPLWHEELE 165 (184)
Q Consensus 154 ~~~~~~~~~~~~ 165 (184)
+++++.+++++.
T Consensus 226 ~~ei~~~~~~~~ 237 (263)
T 1iru_F 226 DDDVSPFLEGLE 237 (263)
T ss_dssp SGGGHHHHTTCC
T ss_pred HHHHHHHHHHHh
Confidence 999999998885
No 31
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=2e-36 Score=247.93 Aligned_cols=162 Identities=16% Similarity=0.152 Sum_probs=152.4
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHH-----HhCCCCCHHHHHHHHHHHHHcCC---CceeEEEEEEEEeCCCCcE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTI-----QLGQPATVKVAANLVRLLSYNNK---NFLQTGMIVGGWDKYEGGK 73 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~-----~~~~~i~~~~la~~is~~~~~~r---~p~~vs~iiaG~D~~~gp~ 73 (184)
||+|++ ||..+|++.+++++|.+++.|++ +++++++++.+|+++++++|.+| +||+|++||||+|+++||+
T Consensus 81 ~i~~~~-aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~ 159 (266)
T 1g0u_M 81 NTVVGI-SGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQF 159 (266)
T ss_dssp SEEEEE-EEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEE
T ss_pred CEEEEe-ccCHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEE
Confidence 799999 99999999999999999999998 99999999999999999998764 7999999999999866999
Q ss_pred EEEECCCCceeeeCeEEEecChhhHHHHhhhhhcC-----CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCC-Cc
Q 029964 74 IYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKE-----GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSE-GV 147 (184)
Q Consensus 74 Ly~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~-----~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkd-g~ 147 (184)
||.+||+|++.++++.|+|+|+++++++||+.|++ +||++||++++++||..+.+||..++++++|++|+++ |+
T Consensus 160 Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~ 239 (266)
T 1g0u_M 160 LRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGL 239 (266)
T ss_dssp EEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEE
T ss_pred EEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCe
Confidence 99999999999999999999999999999999999 9999999999999999999999999999999999999 76
Q ss_pred EEEeecCCCCchh-hhhcCC
Q 029964 148 SRKFYPGDTLPLW-HEELEP 166 (184)
Q Consensus 148 ~~~~~~~~~~~~~-~~~~~~ 166 (184)
+ .+++++++.+ |+..+-
T Consensus 240 ~--~~~~~ei~~~~w~~~~~ 257 (266)
T 1g0u_M 240 T--FKKNLQVENMKWDFAKD 257 (266)
T ss_dssp E--EEEEEECCCCCCGGGGG
T ss_pred E--EcCHHHhhhhhhhHHhh
Confidence 5 4888899998 866554
No 32
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=5.5e-36 Score=241.15 Aligned_cols=162 Identities=19% Similarity=0.162 Sum_probs=150.8
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC----CCceeEEEEEEEEeCCCC-----c
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN----KNFLQTGMIVGGWDKYEG-----G 72 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~----r~p~~vs~iiaG~D~~~g-----p 72 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+.+++++|.+ .|||+|++||||||+++| |
T Consensus 40 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p 118 (235)
T 1q5q_H 40 YSAAGI-AGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAG 118 (235)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCE
T ss_pred cEEEEc-CCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCC
Confidence 799999 999999999999999999999999999999999999999999875 479999999999998657 9
Q ss_pred EEEEECCCCceeee--CeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCe--E-----EEEEEe
Q 029964 73 KIYGVPLGGTIIEQ--PFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGV--V-----RTVTIN 143 (184)
Q Consensus 73 ~Ly~id~~G~~~~~--~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~--i-----ev~iit 143 (184)
+||.+||+|+++++ ++.|+|+|+++++++||+.|+++||++||++++++||..+.++|..+++. + +|++|+
T Consensus 119 ~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~ 198 (235)
T 1q5q_H 119 RIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTIT 198 (235)
T ss_dssp EEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEE
T ss_pred EEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEe
Confidence 99999999999999 99999999999999999999999999999999999999999999987752 2 999999
Q ss_pred CCCcEEEeecCCCCchhhhhcCC
Q 029964 144 SEGVSRKFYPGDTLPLWHEELEP 166 (184)
Q Consensus 144 kdg~~~~~~~~~~~~~~~~~~~~ 166 (184)
++|+++ +++++++.+++++..
T Consensus 199 ~~g~~~--l~~~ei~~~~~~~~~ 219 (235)
T 1q5q_H 199 QAGAVH--VSEETTSELARRIVA 219 (235)
T ss_dssp TTEEEE--CCHHHHHHHHHHHHH
T ss_pred CCCeEE--eCHHHHHHHHHHHHH
Confidence 998654 899999999987744
No 33
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=2e-36 Score=246.33 Aligned_cols=161 Identities=12% Similarity=0.070 Sum_probs=150.3
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-----CceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r-----~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..+|++.+++++|.+++.|++++++++|++.+|+++++++|.++ |||+|++||||||+.+||+||.
T Consensus 72 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~ 150 (254)
T 1iru_G 72 HVGMAV-AGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYM 150 (254)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEE
T ss_pred CEEEEE-ecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEE
Confidence 899999 9999999999999999999999999999999999999999998763 7999999999999556999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCC--CcEEEeecC
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSE--GVSRKFYPG 154 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkd--g~~~~~~~~ 154 (184)
+||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||..+.++|..++.+++|++|+++ |. ++.+++
T Consensus 151 idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~-~~~l~~ 229 (254)
T 1iru_G 151 IDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGR-HEIVPK 229 (254)
T ss_dssp ECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTC-CEECCH
T ss_pred EcCCCCEEeeeeEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCC-eEECCH
Confidence 999999999999999999999999999999999999999999999999999888777889999999988 63 345899
Q ss_pred CCCchhhhhc
Q 029964 155 DTLPLWHEEL 164 (184)
Q Consensus 155 ~~~~~~~~~~ 164 (184)
++++.+++.+
T Consensus 230 ~~i~~~~~~~ 239 (254)
T 1iru_G 230 DIREEAEKYA 239 (254)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 34
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=7.6e-36 Score=241.00 Aligned_cols=161 Identities=15% Similarity=0.199 Sum_probs=150.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCC-CCcEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKY-EGGKIY 75 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~-~gp~Ly 75 (184)
||+|++ ||..||++.+++++|.+++.|+++++++++++.+|+++++++|.+ +|||+|++||||||+. +||+||
T Consensus 68 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly 146 (241)
T 1ryp_D 68 HVVLSF-SGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLY 146 (241)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEE
T ss_pred CEEEEE-eecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEE
Confidence 799999 999999999999999999999999999999999999999999865 3699999999999984 699999
Q ss_pred EECCCCceeeeCeEEEecChhhHHHHhhhhh---cCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEee
Q 029964 76 GVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW---KEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFY 152 (184)
Q Consensus 76 ~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~---~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~ 152 (184)
.+||+|++.++++.|+|+|+++++++||+.| +++||++||++++++||..+.+ .++++++|++|+++|.. +.+
T Consensus 147 ~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~-~~l 222 (241)
T 1ryp_D 147 QTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDI-VAL 222 (241)
T ss_dssp EECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEE-EEC
T ss_pred EECCCCCEEEeeeEEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcE-EEC
Confidence 9999999999999999999999999999999 9999999999999999999986 67889999999999853 569
Q ss_pred cCCCCchhhhhcCCh
Q 029964 153 PGDTLPLWHEELEPQ 167 (184)
Q Consensus 153 ~~~~~~~~~~~~~~~ 167 (184)
++++++.+++++...
T Consensus 223 ~~~ei~~~~~~~~~~ 237 (241)
T 1ryp_D 223 SSEEINQYVTQIEQE 237 (241)
T ss_dssp CHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999887543
No 35
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=2.3e-35 Score=231.93 Aligned_cols=147 Identities=19% Similarity=0.265 Sum_probs=139.6
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-Hc-C-CCceeEEEEEEEEeCCCCcEEEEEC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLS-YN-N-KNFLQTGMIVGGWDKYEGGKIYGVP 78 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~-~~-~-r~p~~vs~iiaG~D~~~gp~Ly~id 78 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+++++.+ |. + ++||+|++|+||||+++||+||.+|
T Consensus 41 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id 119 (201)
T 1iru_K 41 KILLLC-VGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMD 119 (201)
T ss_dssp SEEEEE-EESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEEC
T ss_pred CEEEEe-CcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEEC
Confidence 799999 999999999999999999999999999999999999998765 43 2 4699999999999986699999999
Q ss_pred CCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 79 LGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 79 ~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
|+|++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.+||..++++++|++|+++|+++
T Consensus 120 ~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~ 190 (201)
T 1iru_K 120 YLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHD 190 (201)
T ss_dssp TTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEEC
T ss_pred CCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
No 36
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=7.1e-36 Score=240.08 Aligned_cols=156 Identities=17% Similarity=0.240 Sum_probs=145.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..||++.+++++|.+++.|++++++++|++.+|+++++++|.+ +|||+|++||||||+ +||+||.
T Consensus 68 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~ 145 (233)
T 1ryp_F 68 HMGLSL-AGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLE 145 (233)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEE
T ss_pred CEEEEE-EechHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEE
Confidence 899999 999999999999999999999999999999999999999999642 579999999999998 5899999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcC--CC--CHHHHHHHHHHHHHHHHHhc-CCCCCeEEEEEEeCCCcEEEe
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKE--GM--TKEEAEQLVVKAVSLAIARD-GASGGVVRTVTINSEGVSRKF 151 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~--~~--s~~eai~l~~~~l~~~~~rd-~~s~~~iev~iitkdg~~~~~ 151 (184)
+||+|++.+++++|+|+|+++++++||+.|++ +| |++||++++++||..+. +| ..++++++|++|++++.. +.
T Consensus 146 idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~-~~ 223 (233)
T 1ryp_F 146 FQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPF-TI 223 (233)
T ss_dssp ECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEE-EE
T ss_pred ECCCCCeeeeeEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCE-EE
Confidence 99999999999999999999999999999998 99 99999999999999999 78 568999999999999543 45
Q ss_pred ecCCCCchhh
Q 029964 152 YPGDTLPLWH 161 (184)
Q Consensus 152 ~~~~~~~~~~ 161 (184)
++++|++.++
T Consensus 224 l~~~ei~~~l 233 (233)
T 1ryp_F 224 YDGEAVAKYI 233 (233)
T ss_dssp EEGGGGGGGC
T ss_pred CCHHHHHhhC
Confidence 8889988764
No 37
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=4.6e-36 Score=243.34 Aligned_cols=162 Identities=17% Similarity=0.238 Sum_probs=150.3
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+++++++|.+ +|||+|++||||||+++||+||.
T Consensus 68 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~ 146 (248)
T 1iru_D 68 NVCMAF-AGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQ 146 (248)
T ss_dssp SCEEEE-EECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEE
T ss_pred CEEEEE-eecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEE
Confidence 799999 999999999999999999999999999999999999999999765 36999999999999556999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCCC--CHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEEEeecC
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGM--TKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPG 154 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~--s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~~~~~~ 154 (184)
+||+|++.+++++|+|+|+++++++||+.|+++| |++||++++++||..+.+ .++++++|++|+++|.. +.+++
T Consensus 147 idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~-~~l~~ 222 (248)
T 1iru_D 147 TDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSL-KILNP 222 (248)
T ss_dssp ECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCE-ECCCH
T ss_pred EcCCCcEEEeeEEEECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcE-EECCH
Confidence 9999999999999999999999999999999999 999999999999998886 46889999999999953 46999
Q ss_pred CCCchhhhhcCChh
Q 029964 155 DTLPLWHEELEPQN 168 (184)
Q Consensus 155 ~~~~~~~~~~~~~~ 168 (184)
++++.+++++..+.
T Consensus 223 ~ei~~~~~~~~~~~ 236 (248)
T 1iru_D 223 EEIEKYVAEIEKEK 236 (248)
T ss_dssp HHHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHhcc
Confidence 99999998876543
No 38
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1.9e-35 Score=239.81 Aligned_cols=162 Identities=10% Similarity=0.113 Sum_probs=140.9
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHH-HHc---CCCceeEEEEEEEEeC---CCCcE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLG-QPATVKVAANLVRLL-SYN---NKNFLQTGMIVGGWDK---YEGGK 73 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~-~~i~~~~la~~is~~-~~~---~r~p~~vs~iiaG~D~---~~gp~ 73 (184)
||+|++ +|+.+|++.+.+.++.+++.|++.++ .+++++.+|+++++. .+. .+|||+|++||||||+ .+||+
T Consensus 59 ~i~~~~-aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~ 137 (248)
T 3mi0_A 59 RVGFAA-AGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPE 137 (248)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCE
T ss_pred CEEEEE-ccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCE
Confidence 899999 99999999999999999999999999 899999999999954 332 3689999999999998 36999
Q ss_pred EEEECCCCceee-eCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHH-------HhcCCCCCeEEEEEEeCC
Q 029964 74 IYGVPLGGTIIE-QPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAI-------ARDGASGGVVRTVTINSE 145 (184)
Q Consensus 74 Ly~id~~G~~~~-~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~-------~rd~~s~~~iev~iitkd 145 (184)
||++||+|++.+ ++++|+|+|+++++++||++|+++||++||++++++||..+. +++ .++++++|++|+++
T Consensus 138 Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~~~ 216 (248)
T 3mi0_A 138 LYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLDAN 216 (248)
T ss_dssp EEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETT
T ss_pred EEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEECC
Confidence 999999999995 999999999999999999999999999999999999999999 565 45789999999999
Q ss_pred Cc--EEEeecCCCCchhhhhcC
Q 029964 146 GV--SRKFYPGDTLPLWHEELE 165 (184)
Q Consensus 146 g~--~~~~~~~~~~~~~~~~~~ 165 (184)
|+ .++.++++|++.++++++
T Consensus 217 g~~~~f~~l~~~ei~~~l~~~~ 238 (248)
T 3mi0_A 217 RPRRAFRRITGSALQALLVDQE 238 (248)
T ss_dssp SSSCCEEECCHHHHHHTC----
T ss_pred CCcccEEECCHHHHHHHHHHcC
Confidence 74 345699999999988764
No 39
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=3.6e-35 Score=237.75 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=148.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+++++++|.| .|||+|++|||||| +||+||.
T Consensus 73 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~ 149 (246)
T 1j2p_A 73 HICAAT-SGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYE 149 (246)
T ss_dssp SEEEEE-EECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEE
T ss_pred CEEEEE-eEccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEE
Confidence 799999 999999999999999999999999999999999999999999754 36999999999999 5999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEe-CCCcEEEeecCC
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN-SEGVSRKFYPGD 155 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iit-kdg~~~~~~~~~ 155 (184)
+||+|++.++++.|+|+|+++++++||+.|+++||++||++++++||..+.++ ..++++++|++|+ +++.. +.++++
T Consensus 150 idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~-~~l~~~ 227 (246)
T 1j2p_A 150 TDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTF-KEVSPE 227 (246)
T ss_dssp ECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCC-EECCHH
T ss_pred ECCCceEEeeeEEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCce-EECCHH
Confidence 99999999999999999999999999999999999999999999999999998 7788999999999 65433 459999
Q ss_pred CCchhhhhcC
Q 029964 156 TLPLWHEELE 165 (184)
Q Consensus 156 ~~~~~~~~~~ 165 (184)
+++.+++++.
T Consensus 228 ei~~~~~~~~ 237 (246)
T 1j2p_A 228 ELKPYVERAN 237 (246)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997763
No 40
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.4e-34 Score=234.07 Aligned_cols=152 Identities=17% Similarity=0.183 Sum_probs=142.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+++++++|.+ +|||+|++||||||+ +||+||.
T Consensus 69 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~ 146 (244)
T 1ryp_G 69 HIGCVY-SGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYM 146 (244)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEE
T ss_pred CEEEEE-cccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEE
Confidence 899999 999999999999999999999999999999999999999999654 379999999999997 5999999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhh---hcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeC---CCcEEE
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQA---WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINS---EGVSRK 150 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~---~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitk---dg~~~~ 150 (184)
+||+|++.++++.|+|+|+++++++||+. |+++||++||++++++||..+.++|..++.+++|++|++ +|+++
T Consensus 147 idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~- 225 (244)
T 1ryp_G 147 LEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHK- 225 (244)
T ss_dssp ECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEE-
T ss_pred ECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeee-
Confidence 99999999999999999999999999997 999999999999999999999999999999999999998 78764
Q ss_pred eecCCCC
Q 029964 151 FYPGDTL 157 (184)
Q Consensus 151 ~~~~~~~ 157 (184)
+.++++
T Consensus 226 -~~~~~~ 231 (244)
T 1ryp_G 226 -FVKGDL 231 (244)
T ss_dssp -ECCTHH
T ss_pred -eChHHH
Confidence 334443
No 41
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=4.8e-35 Score=242.05 Aligned_cols=155 Identities=19% Similarity=0.179 Sum_probs=144.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
||+|++ ||+.+|++.+++++|.+++.|+++++++++++.+|+++++++|.| +|||+|++||||||+ +||+||+
T Consensus 73 ~i~~~~-aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~ 150 (288)
T 3nzj_F 73 HIGCVY-SGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYM 150 (288)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEE
T ss_pred CEEEEe-cCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEE
Confidence 899999 999999999999999999999999999999999999999999765 369999999999999 4899999
Q ss_pred ECCCCceeeeCeEEEecChhhHHHHhhhh---hcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeC--CCcEEEe
Q 029964 77 VPLGGTIIEQPFAIGGSGSSYLYGFFDQA---WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINS--EGVSRKF 151 (184)
Q Consensus 77 id~~G~~~~~~~~a~G~gs~~a~~~Le~~---~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitk--dg~~~~~ 151 (184)
+||+|++.+++++|+|+|+++++++||+. |+++||++||++++++||..+.++|..++.+++|+||++ ++..++.
T Consensus 151 iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~ 230 (288)
T 3nzj_F 151 LEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 230 (288)
T ss_dssp ECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEE
T ss_pred ECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEE
Confidence 99999999999999999999999999999 999999999999999999999999988888999999999 4545556
Q ss_pred ecCCCCc
Q 029964 152 YPGDTLP 158 (184)
Q Consensus 152 ~~~~~~~ 158 (184)
+|.+.++
T Consensus 231 vp~~~~~ 237 (288)
T 3nzj_F 231 VKGDLLQ 237 (288)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 7666544
No 42
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=6.1e-35 Score=236.95 Aligned_cols=161 Identities=16% Similarity=0.234 Sum_probs=146.9
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHcC-----CCceeEEEEEEEEeCCCCcEEE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQ-HTIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIY 75 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~-~~~~~~~~i~~~~la~~is~~~~~~-----r~p~~vs~iiaG~D~~~gp~Ly 75 (184)
||+|++ ||..+|++.+++++|.+++. |+..++.+++++.+++.++++++.+ .|||+|++||||||+.+||+||
T Consensus 70 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly 148 (250)
T 1ryp_B 70 DIGAVY-SGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLY 148 (250)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEE
T ss_pred CEEEEe-eeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEE
Confidence 799999 99999999999999999999 9999999999999999999987643 2799999999999986689999
Q ss_pred EECCCCceeeeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCC---------
Q 029964 76 GVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEG--------- 146 (184)
Q Consensus 76 ~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg--------- 146 (184)
.+||+|++.++++.|+|+|+++++++||+.|+++||.+||++++++||..+.+++. ++++++|++|+++|
T Consensus 149 ~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~-sg~~i~v~vi~~~~~~~~~~~~~ 227 (250)
T 1ryp_B 149 QVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDENPDLLGYTGI 227 (250)
T ss_dssp EECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCCGGGTSEESC
T ss_pred EECCCCCEEeeceeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcccc-CCCCEEEEEEEcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999865 68899999999973
Q ss_pred -----cEEEeecCCCCchhhhhc
Q 029964 147 -----VSRKFYPGDTLPLWHEEL 164 (184)
Q Consensus 147 -----~~~~~~~~~~~~~~~~~~ 164 (184)
..++.++++|++.+++++
T Consensus 228 ~~~~~~~~~~l~~~ei~~~l~~~ 250 (250)
T 1ryp_B 228 PTDKGPRFRKLTSQEINDRLEAL 250 (250)
T ss_dssp SSCCCCSEEECCHHHHHHHHTTC
T ss_pred ccCCCCCeEECCHHHHHHHHHhC
Confidence 224568889998887653
No 43
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.1e-34 Score=240.60 Aligned_cols=162 Identities=19% Similarity=0.162 Sum_probs=151.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC----CCceeEEEEEEEEeCCCC-----c
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN----KNFLQTGMIVGGWDKYEG-----G 72 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~----r~p~~vs~iiaG~D~~~g-----p 72 (184)
||+|++ ||..+|++.+++++|.+++.|+++++++++++.+|+++++++|.+ .+||+|++||||||++++ |
T Consensus 105 ~i~~~~-aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p 183 (294)
T 1q5r_H 105 YSAAGI-AGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAG 183 (294)
T ss_dssp TEEEEE-EEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCE
T ss_pred cEEEEE-eecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCC
Confidence 799999 999999999999999999999999999999999999999999865 479999999999998656 9
Q ss_pred EEEEECCCCceeee--CeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCe--E-----EEEEEe
Q 029964 73 KIYGVPLGGTIIEQ--PFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGV--V-----RTVTIN 143 (184)
Q Consensus 73 ~Ly~id~~G~~~~~--~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~--i-----ev~iit 143 (184)
+||.+||+|+++++ ++.|+|+|+++++++||+.|+++||++||++++++||..+.++|..+++. + +|++|+
T Consensus 184 ~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~ 263 (294)
T 1q5r_H 184 RIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTIT 263 (294)
T ss_dssp EEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEE
T ss_pred EEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEE
Confidence 99999999999999 99999999999999999999999999999999999999999999987653 5 999999
Q ss_pred CCCcEEEeecCCCCchhhhhcCC
Q 029964 144 SEGVSRKFYPGDTLPLWHEELEP 166 (184)
Q Consensus 144 kdg~~~~~~~~~~~~~~~~~~~~ 166 (184)
++|+++ +++++++.+++++..
T Consensus 264 ~~g~~~--l~~~ei~~~l~~i~~ 284 (294)
T 1q5r_H 264 QAGAVH--VSEETTSELARRIVA 284 (294)
T ss_dssp TTEEEE--CCHHHHHHHHHHHCC
T ss_pred CCCEEE--cCHHHHHHHHHHHHH
Confidence 999654 899999999987754
No 44
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=8.8e-35 Score=237.30 Aligned_cols=166 Identities=11% Similarity=0.120 Sum_probs=144.5
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHH---HHcC-CCceeEEEEEEEEe--C-CCCcE
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLG-QPATVKVAANLVRLL---SYNN-KNFLQTGMIVGGWD--K-YEGGK 73 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~-~~i~~~~la~~is~~---~~~~-r~p~~vs~iiaG~D--~-~~gp~ 73 (184)
||+|++ ||+.+|++.+++++|.+++.|++.++ ++++++.+|++++++ .|.+ .|||+|++|||||| + .+||+
T Consensus 59 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~ 137 (259)
T 1q5q_A 59 RLGFAA-VGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQ 137 (259)
T ss_dssp TEEEEE-EECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCE
T ss_pred CEEEEE-ccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCE
Confidence 899999 99999999999999999999999988 499999999999995 3444 47999999999999 3 46999
Q ss_pred EEEECCCCcee-eeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHH-----HhcCCCCCeEEEEEEeCCCc
Q 029964 74 IYGVPLGGTII-EQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAI-----ARDGASGGVVRTVTINSEGV 147 (184)
Q Consensus 74 Ly~id~~G~~~-~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~-----~rd~~s~~~iev~iitkdg~ 147 (184)
||++||+|++. +++++|+|+|++.++++||+.|+++||++||++++++||..+. +||. ++++++|++|+++|.
T Consensus 138 Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~ 216 (259)
T 1q5q_A 138 LYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRP 216 (259)
T ss_dssp EEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSS
T ss_pred EEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCC
Confidence 99999999999 8899999999999999999999999999999999999999998 8999 889999999999962
Q ss_pred --EEEeecCCCCchhhhhcCChhh
Q 029964 148 --SRKFYPGDTLPLWHEELEPQNS 169 (184)
Q Consensus 148 --~~~~~~~~~~~~~~~~~~~~~~ 169 (184)
..+.+++++++.+++++....+
T Consensus 217 ~~~~~~l~~~ei~~~~~~~~~~~~ 240 (259)
T 1q5q_A 217 RRAFRRIAGTALEQLVPAEPAAAS 240 (259)
T ss_dssp SCCEEECCHHHHHTTSCCC-----
T ss_pred cCCeEECCHHHHHHHHHHhhhccc
Confidence 1245899999999988766553
No 45
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=2.9e-34 Score=237.67 Aligned_cols=164 Identities=19% Similarity=0.189 Sum_probs=141.4
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC----CceeEEEEEEEEeCCCC-----c
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK----NFLQTGMIVGGWDKYEG-----G 72 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r----~p~~vs~iiaG~D~~~g-----p 72 (184)
||+|++ ||..+|++.+++++|.+++.|++.++.+++++.+|+++++++|.++ +||+|++||||||++++ |
T Consensus 97 ~i~~~~-aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p 175 (291)
T 2jay_A 97 YTATGI-AGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAG 175 (291)
T ss_dssp TEEEEE-ESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCE
T ss_pred cEEEEE-cccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCC
Confidence 799999 9999999999999999999999999999999999999999999873 59999999999998656 9
Q ss_pred EEEEECCCCcee--eeCeEEEecChhhHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCe--E-----EEEEEe
Q 029964 73 KIYGVPLGGTII--EQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGV--V-----RTVTIN 143 (184)
Q Consensus 73 ~Ly~id~~G~~~--~~~~~a~G~gs~~a~~~Le~~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~--i-----ev~iit 143 (184)
+||++||+|+++ ++++.|+|+|+++++++||+.|+++||.+||++++++||..+.++|..+++. + +|++|+
T Consensus 176 ~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~ 255 (291)
T 2jay_A 176 RIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIID 255 (291)
T ss_dssp EEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEE
T ss_pred EEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEE
Confidence 999999999999 8999999999999999999999999999999999999999999999987753 1 699999
Q ss_pred CCCcEEEeecCCCCchhhhhcCChh
Q 029964 144 SEGVSRKFYPGDTLPLWHEELEPQN 168 (184)
Q Consensus 144 kdg~~~~~~~~~~~~~~~~~~~~~~ 168 (184)
++|+++ +++++++.+++++.++-
T Consensus 256 ~dg~~~--l~~~ei~~~~~~~~~~~ 278 (291)
T 2jay_A 256 ADGAVD--VPESRIAELARAIIESR 278 (291)
T ss_dssp TTEEEE--CCHHHHHHHHHHC----
T ss_pred CCCeEE--cCHHHHHHHHHHHHHhh
Confidence 998654 89999999998886553
No 46
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.93 E-value=1.9e-25 Score=171.31 Aligned_cols=126 Identities=18% Similarity=0.148 Sum_probs=111.6
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--CceeEEEEEEEEeCCCCcEEEEECC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK--NFLQTGMIVGGWDKYEGGKIYGVPL 79 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r--~p~~vs~iiaG~D~~~gp~Ly~id~ 79 (184)
||+|++ ||..||++.+.+++|.+++.|+.+ .++.++++.+ .+++++ +||++++|++ | ||+||.+||
T Consensus 41 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~-~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~ 108 (171)
T 1m4y_A 41 KVLAGF-AGSVADAMTLFDRFEAKLREWGGN-----LTKAAVELAK-DWRTDRVLRRLEALLLVA--D---KENIFIISG 108 (171)
T ss_dssp TEEEEE-ESCHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHH-HHHHCTTGGGCCCEEEEE--C---SSCEEEECT
T ss_pred CEEEEe-CccHHHHHHHHHHHHHHHHHhccc-----HHHHHHHHHH-HHHHhCCCCceEEEEEEE--c---CCEEEEECC
Confidence 799999 999999999999999999998754 2677777644 555543 5799998888 4 899999999
Q ss_pred CCceeeeC--eEEEecChhhHHHHhhhhhc-CCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Q 029964 80 GGTIIEQP--FAIGGSGSSYLYGFFDQAWK-EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 142 (184)
Q Consensus 80 ~G~~~~~~--~~a~G~gs~~a~~~Le~~~~-~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~ii 142 (184)
+|++.+++ +.|+|+|+++++++||+.|+ ++||. ++++++||..+.+||..++++++|.++
T Consensus 109 ~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 109 NGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp TSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred CCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 99999988 99999999999999999999 99996 678999999999999999999999764
No 47
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.93 E-value=4.3e-25 Score=169.88 Aligned_cols=127 Identities=13% Similarity=-0.001 Sum_probs=112.5
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--CceeEEEEEEEEeCCCCcEEEEECC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNK--NFLQTGMIVGGWDKYEGGKIYGVPL 79 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~r--~p~~vs~iiaG~D~~~gp~Ly~id~ 79 (184)
||+|++ ||..+|++.+.+++|.+++.|+. +....+..+++.++++| ||+ +.+++|+| +|+||.+||
T Consensus 41 ~i~~~~-aG~~aD~~~l~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~ 108 (174)
T 1g3k_A 41 KVLAGF-AGGTADAFTLFELFERKLEMHQG------HLLKSAVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITG 108 (174)
T ss_dssp TEEEEE-ESCHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEET
T ss_pred CEEEEe-CccHHHHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcC
Confidence 799999 99999999999999999999875 45555666777776653 475 46778886 799999999
Q ss_pred CCceeeeC---eEEEecChhhHHHHhhhhhc-CCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEe
Q 029964 80 GGTIIEQP---FAIGGSGSSYLYGFFDQAWK-EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 143 (184)
Q Consensus 80 ~G~~~~~~---~~a~G~gs~~a~~~Le~~~~-~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iit 143 (184)
+|++.+++ +.|+|+|+++++++||+.|+ ++||.+ +++++||..+.+||..++++++|.+|+
T Consensus 109 ~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 109 IGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp TTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred CCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 99999988 99999999999999999999 999954 799999999999999999999999985
No 48
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.93 E-value=4.1e-25 Score=171.04 Aligned_cols=126 Identities=17% Similarity=0.063 Sum_probs=110.9
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC--CCceeEEEEEEEEeCCCCcEEEEECC
Q 029964 2 NIDCLRLLFQAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNN--KNFLQTGMIVGGWDKYEGGKIYGVPL 79 (184)
Q Consensus 2 ~I~~~~~sG~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~~--r~p~~vs~iiaG~D~~~gp~Ly~id~ 79 (184)
||+|++ ||.++|++.+.+++|.+++.|+ | ..++.++ .+++.++++ .|||++++||| | +|+||.+||
T Consensus 47 ~i~~~~-aG~~aD~~~l~~~~~~~~~~y~---g--~~~~~~~-~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~ 114 (180)
T 2z3b_A 47 KVLAGF-AGSVADAFTLFEKFEAKLEEYN---G--NLKRAAV-ELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSG 114 (180)
T ss_dssp TEEEEE-CSCHHHHHHHHHHHHHHHHHTT---T--CHHHHHH-HHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECT
T ss_pred CEEEEe-CchHHHHHHHHHHHHHHHHHhc---C--ChHHHHH-HHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECC
Confidence 799999 9999999999999999999987 3 3344444 356666543 57999999999 3 799999999
Q ss_pred CCceee--eCeEEEecChhhHHHHhhhhhcC---CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Q 029964 80 GGTIIE--QPFAIGGSGSSYLYGFFDQAWKE---GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 142 (184)
Q Consensus 80 ~G~~~~--~~~~a~G~gs~~a~~~Le~~~~~---~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~ii 142 (184)
+|++.+ +++.|+|+|+++++++||+.|++ +||.+| ++++||..+.+||..++++++|.+|
T Consensus 115 ~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 115 TGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp TCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 999998 59999999999999999999998 999999 4789999999999999999999988
No 49
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=37.13 E-value=1.1e+02 Score=22.97 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=33.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 107 KEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 107 ~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
.+.+|.++|.+++..++..+.++. ..+-|.|++..|...
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g----~pV~IaVvD~~G~ll 100 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDG----RHVSVAVVDRNGNTL 100 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTT----CCCEEEEEETTSCEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcC----CCEEEEEEeCCCCEE
Confidence 357999999999999999998863 468899999988764
No 50
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=34.99 E-value=40 Score=24.02 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 108 EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 108 ~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
+.+|.++|.+++..+...+.++ +..+-|.|++..|...
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~ll 47 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGNTL 47 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCCEE
Confidence 3589999999999999998875 3468899999888753
No 51
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=32.80 E-value=7.2 Score=28.06 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=34.1
Q ss_pred EEEEeCC-----CcEEEeecCCCCchhhhhcCChhhhhhhcccCCC
Q 029964 139 TVTINSE-----GVSRKFYPGDTLPLWHEELEPQNSLLDMMNVASP 179 (184)
Q Consensus 139 v~iitkd-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (184)
+++|++. |...+.|+.+|+.-|-+-.++..+|.|+.|--||
T Consensus 12 ~C~V~~n~lf~~g~~~r~L~~dei~~f~~y~~~l~~~~~~~~~fsp 57 (149)
T 1f32_A 12 ICTVKDNQVFVANLPWTMLEGDDIQVGKEFAARVEDCTNVKHDMAP 57 (149)
T ss_dssp CEEEETTEEEETTEEEEECCGGGHHHHHHHHHHHHHHHHTTCCCSH
T ss_pred EEEEEcceeEecCceeecccchhhHHHHHHHHHHHHHHhhHhhcCC
Confidence 5777774 7777789999999999999999999999776655
No 52
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=32.26 E-value=45 Score=20.68 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhc
Q 029964 108 EGMTKEEAEQLVVKAVSLAIARD 130 (184)
Q Consensus 108 ~~~s~~eai~l~~~~l~~~~~rd 130 (184)
.+||.|+|.++.++.++..+-+|
T Consensus 23 ~~ls~EQaqe~Lve~~rQmMike 45 (65)
T 1ojh_A 23 QNMSHDQAKDFLVKLYEQMVVRE 45 (65)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999888776
No 53
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=31.95 E-value=1e+02 Score=21.27 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 029964 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVR 47 (184)
Q Consensus 11 ~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is 47 (184)
++.|-..+++++|. |..++|..++++.+++.+.
T Consensus 46 LTe~HW~VI~flR~----~Y~e~~~~P~iR~l~K~~~ 78 (115)
T 1sau_A 46 LTEEHWKIIRYLRD----YFIKYGVAPPVRMLVKHCK 78 (115)
T ss_dssp CCHHHHHHHHHHHH----HHHHHSSCCCHHHHHHHHH
T ss_pred ECHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHH
Confidence 56777888988855 4567888899999999883
No 54
>2q8v_A NBLA protein; phycobilisome, nutrient starvation, disassembly, bleaching, protein binding; 2.50A {Thermosynechococcus vulcanus} PDB: 2qdo_A
Probab=31.60 E-value=47 Score=20.45 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhc
Q 029964 108 EGMTKEEAEQLVVKAVSLAIARD 130 (184)
Q Consensus 108 ~~~s~~eai~l~~~~l~~~~~rd 130 (184)
.+||.++|.++.++.++..+-+|
T Consensus 28 ~~ls~EQAqe~Lve~~rQmMike 50 (63)
T 2q8v_A 28 SAMSLQEARELLLQASRLLMMKD 50 (63)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999888766
No 55
>4gdv_A L-asparaginase; NTN enzyme, homodimer, hydrolase, L-asparagine; 1.75A {Homo sapiens} PDB: 4gdu_A 4gdt_A 4gdw_A
Probab=29.82 E-value=2.1e+02 Score=23.08 Aligned_cols=63 Identities=21% Similarity=0.266 Sum_probs=40.5
Q ss_pred CCceeeeC---eEEEecChhhHHHHhhhh----hcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcE
Q 029964 80 GGTIIEQP---FAIGGSGSSYLYGFFDQA----WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVS 148 (184)
Q Consensus 80 ~G~~~~~~---~~a~G~gs~~a~~~Le~~----~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~ 148 (184)
.|++.... ..++|.|..+++..+-.. .+.+++.+||.+.++.-+..-.. +..=+-.|+++|..
T Consensus 207 aG~yAdn~~gavs~TG~GE~iir~~~A~~i~~~m~~G~s~~eA~~~~i~~~~~~~~------g~gG~Iavd~~G~~ 276 (310)
T 4gdv_A 207 AGGYADNDIGAVSTTGHGESILKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRVK------GLGGLIVVSKTGDW 276 (310)
T ss_dssp TTEEEETTTEEEEEEECHHHHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC------CCEEEEEEETTSCE
T ss_pred ceeEecCCcEEEEeecCcHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcC------CcEEEEEEeCCCCE
Confidence 55555433 457999998888766552 35689999998877765543221 12335567888754
No 56
>2lma_A THP5 peptide; CD4+, immune system; NMR {Synthetic}
Probab=29.40 E-value=17 Score=17.75 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=12.0
Q ss_pred hhhhhhhcccCCCCC
Q 029964 167 QNSLLDMMNVASPEP 181 (184)
Q Consensus 167 ~~~~~~~~~~~~~~~ 181 (184)
|-++.|+|.|.||..
T Consensus 6 qteyydvmtvisppe 20 (26)
T 2lma_A 6 QTEYYDVMTVISPPE 20 (26)
T ss_dssp HHHHHTTSTTSSGGG
T ss_pred cceeeeeEEEeCCcc
Confidence 467889999999853
No 57
>1p4k_A N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; alpha beta, beta alpha, sandwich, hydrolase; 1.90A {Elizabethkingia meningoseptica} SCOP: d.153.1.5 PDB: 1p4v_A 9gaa_A 9gaf_A 9gac_A 3ljq_A 2gl9_A* 1ayy_A 2gaw_A 2gac_A* 2gaw_B 1ayy_B 2gl9_B* 2gac_B*
Probab=28.95 E-value=1.5e+02 Score=23.88 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=43.2
Q ss_pred CCceeee---CeEEEecChhhHHHHhhhh----hcCCCCHHHHHHHHHHHHHHHHH-hcC-CCCCeEEEEEEeCCCcEE
Q 029964 80 GGTIIEQ---PFAIGGSGSSYLYGFFDQA----WKEGMTKEEAEQLVVKAVSLAIA-RDG-ASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 80 ~G~~~~~---~~~a~G~gs~~a~~~Le~~----~~~~~s~~eai~l~~~~l~~~~~-rd~-~s~~~iev~iitkdg~~~ 149 (184)
.|++... -..++|.|..+++..+-.. .+.+++.++|.+-+++-+...+. ++. ..+...=+-.|+++|..-
T Consensus 189 aG~yAd~~~gavs~TG~GE~iir~~~A~~i~~~m~~G~s~~~A~~~ai~~~~~~~~~~~~~~~~~~gG~Iavd~~G~~~ 267 (295)
T 1p4k_A 189 AGLFVDNEIGAATATGHGEEVIRTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYG 267 (295)
T ss_dssp TTEEEETTTEEEEEEECHHHHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEEETTSCEE
T ss_pred ceeeecCCcEEEEeecccHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCCceEEEEEEcCCCCEE
Confidence 4455432 3567999998887766553 45789999998888766654432 111 111234455688888654
No 58
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=27.67 E-value=68 Score=18.88 Aligned_cols=35 Identities=11% Similarity=0.335 Sum_probs=24.3
Q ss_pred HHHHhhhhhc-CCCCH--HHHHHHHHHHHHHHHHhcCC
Q 029964 98 LYGFFDQAWK-EGMTK--EEAEQLVVKAVSLAIARDGA 132 (184)
Q Consensus 98 a~~~Le~~~~-~~~s~--~eai~l~~~~l~~~~~rd~~ 132 (184)
+..+|..... ..++. .|.+++|.+||..+.+-|..
T Consensus 9 Ii~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~~~ 46 (52)
T 4gof_A 9 IIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVE 46 (52)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCCCcc
Confidence 4455555443 34544 67899999999999987653
No 59
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=25.02 E-value=1.3e+02 Score=21.27 Aligned_cols=60 Identities=5% Similarity=-0.106 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh-C-CCCCHHHHHHHHHHHHHcCCC--ceeEEEEEEEEeCCCCcEEEE
Q 029964 14 DSQTVSDYVRYFLHQHTIQL-G-QPATVKVAANLVRLLSYNNKN--FLQTGMIVGGWDKYEGGKIYG 76 (184)
Q Consensus 14 D~~~l~~~lr~~~~~~~~~~-~-~~i~~~~la~~is~~~~~~r~--p~~vs~iiaG~D~~~gp~Ly~ 76 (184)
|.-.+.+++..+....+.+- . .+=++..+|- =+++-+..+| .|+-+-+++|-| |-|+|..
T Consensus 10 eS~AFaKRlk~sVKKLE~RLkKYepgSpPALAL-qqqIeKTK~RFdkYgkSGLLCG~D--GLPHLIt 73 (154)
T 1qzv_F 10 XXXXXXXXEKQALKKLQASLKLYADDSAPALAI-KATMEXXXXXXXXXXXXXXXXXXX--XXXXXXX 73 (154)
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCCCChHHHHH-HHHHHHHhcccccccccccccccc--ccccccc
Confidence 44455666666555444222 1 2334444442 1334444444 499999999998 5788864
No 60
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=25.01 E-value=1.6e+02 Score=20.80 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 029964 11 QAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLL 49 (184)
Q Consensus 11 ~~aD~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~ 49 (184)
++.|-..+++++|. |..+++..++++.+++.+...
T Consensus 62 LTe~HWeVI~flR~----fY~e~~~sP~iR~L~K~~~~~ 96 (132)
T 1yx3_A 62 LTEEHWDIINFLRE----YYEEYQIAPAVRVLTKAVGKK 96 (132)
T ss_dssp CCHHHHHHHHHHHH----HHHHHCCCCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH----HHHHHCCCChHHHHHHHHHHH
Confidence 45677888888755 456788889999999988543
No 61
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=24.39 E-value=68 Score=20.12 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCc
Q 029964 109 GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGV 147 (184)
Q Consensus 109 ~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~ 147 (184)
+|+.+||+..+.+.|..+..+-....+.-.|.||+-.|.
T Consensus 7 Gl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~ 45 (82)
T 3fau_A 7 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 45 (82)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC--
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 689999999988888876641000012345888887775
No 62
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=23.98 E-value=89 Score=20.20 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCc
Q 029964 109 GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGV 147 (184)
Q Consensus 109 ~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~ 147 (184)
+|+.+||+..+.+.|..+...-..+.+.-.|.||+-.|.
T Consensus 15 Gl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~ 53 (96)
T 2d9i_A 15 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 53 (96)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCC
Confidence 699999999999988877531100122346889987775
No 63
>1apy_B Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_B*
Probab=23.47 E-value=1.7e+02 Score=20.76 Aligned_cols=58 Identities=16% Similarity=0.039 Sum_probs=36.5
Q ss_pred CeEEEecChhhHHHHhhh----hhcCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCcEE
Q 029964 87 PFAIGGSGSSYLYGFFDQ----AWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 149 (184)
Q Consensus 87 ~~~a~G~gs~~a~~~Le~----~~~~~~s~~eai~l~~~~l~~~~~rd~~s~~~iev~iitkdg~~~ 149 (184)
-..++|.|..+++..+-. ..+.+++.+||.+-+++-+.. +- ....--+..++++|..-
T Consensus 48 a~s~TG~GE~iiR~~~A~~iv~~m~~G~~~~~A~~~~i~~~~~---~~--~~~~ggvIa~d~~G~~~ 109 (141)
T 1apy_B 48 AAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQK---HF--PEFFGAVICANVTGSYG 109 (141)
T ss_dssp EEEEEECHHHHGGGCHHHHHHHHHHTTCCHHHHHHHHHHHHHH---HC--TTCCEEEEEEETTSCEE
T ss_pred EEEeecChHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHHHHH---hc--CCCcEEEEEEeCCCCEE
Confidence 356799998776655544 345789999998776644432 21 11223467788888653
No 64
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=21.41 E-value=1.7e+02 Score=21.71 Aligned_cols=38 Identities=13% Similarity=-0.039 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 029964 15 SQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYN 52 (184)
Q Consensus 15 ~~~l~~~lr~~~~~~~~~~~~~i~~~~la~~is~~~~~ 52 (184)
++++++++...+-...........+-...|++|+++|.
T Consensus 124 aRtv~RRAER~~v~l~~~~~v~~~~~~yLNRLSD~lFv 161 (183)
T 2zhy_A 124 CRTVCRRAERSIVALGASEPLNAAPRRYVNRLSDLLFV 161 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 56777777666555433333445566679999998864
No 65
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=20.11 E-value=84 Score=20.80 Aligned_cols=35 Identities=9% Similarity=0.282 Sum_probs=24.2
Q ss_pred hHHHHhhhhhc-CCCCH--HHHHHHHHHHHHHHHHhcC
Q 029964 97 YLYGFFDQAWK-EGMTK--EEAEQLVVKAVSLAIARDG 131 (184)
Q Consensus 97 ~a~~~Le~~~~-~~~s~--~eai~l~~~~l~~~~~rd~ 131 (184)
.+..+|..... ..++. .|.+++|.+||..+..-|.
T Consensus 25 sIIdFL~~sv~~~~ls~D~~ESLEVAIqCI~~AF~Vd~ 62 (92)
T 4asv_A 25 LIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFER 62 (92)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCCc
Confidence 34455555544 34555 6789999999999997654
Done!