Query 029965
Match_columns 184
No_of_seqs 147 out of 950
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 09:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029965.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029965hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 45.7 9.5 0.00069 22.1 3.0 25 24-48 7-31 (52)
2 d1h2vc1 a.118.1.14 (C:29-290) 14.4 1.6E+02 0.011 21.5 5.8 71 66-136 35-114 (262)
3 d1wfza_ d.224.1.2 (A:) Iron-su 9.6 1.8E+02 0.013 19.1 4.2 71 82-172 59-129 (130)
4 d3ct6a1 c.54.1.2 (A:1-123) PTS 7.9 1.8E+02 0.013 18.8 3.6 33 79-111 87-119 (123)
5 d1rzhh2 f.23.10.1 (H:11-35) Ph 6.4 49 0.0036 15.9 -0.1 15 118-132 6-20 (26)
6 d1xmea1 f.24.1.1 (A:14-562) Ba 5.3 1.9E+02 0.014 23.6 3.1 26 141-166 464-489 (549)
7 d1dmua_ c.52.1.4 (A:) Restrict 4.9 90 0.0066 23.3 0.6 9 172-180 65-73 (299)
8 d1ohua_ f.1.4.1 (A:) Apoptosis 4.9 1.4E+02 0.01 20.5 1.7 19 22-40 93-111 (172)
9 d1rh5b_ f.23.28.1 (B:) Preprot 4.7 2.7E+02 0.02 15.6 2.6 34 19-52 15-48 (56)
10 d2ahra1 a.100.1.10 (A:153-256) 4.6 4E+02 0.029 16.2 6.1 13 42-56 13-25 (104)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=45.72 E-value=9.5 Score=22.06 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=19.6
Q ss_pred cccHHHHHHHHHhcccchhhHHHHH
Q 029965 24 KVNWKRVAVTSSFGFGFVGPVGHFW 48 (184)
Q Consensus 24 ~~D~~Rt~r~~~~G~~~~gP~~h~W 48 (184)
-+|.||++.......+..+-+.|+-
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfi 31 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFI 31 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999887777776777788875
No 2
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.43 E-value=1.6e+02 Score=21.49 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCHH---HHHHHHHhchHHHHHh-hcc-----cchHHhhhhheeecc
Q 029965 66 SARFVATKVAMDSIIFGPLDLFVFFTYMGFSTGKNVA---QVKEDLKRDFLPALVL-EGG-----IWPIVQVANFRYVPV 136 (184)
Q Consensus 66 ~~~~v~~Kv~~DQ~v~aP~~~~~F~~~~~~leG~~~~---~~~~~lk~~~~~~l~~-~~~-----vWp~~q~iNF~fVP~ 136 (184)
..+..+.+.+++.....|..++.|=+..++++-+..+ ++.+++-+++-..+.. +|. +-=.++++|+..++.
T Consensus 35 ~~~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~~l~~~~~~~~~~llrFla~L~n~~Vv~~ 114 (262)
T d1h2vc1 35 NYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA 114 (262)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCH
T ss_pred HHHHHHHHHHHHHHHhCcchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCCCcH
Confidence 3467788888888889998888887788888766543 4555565666555543 222 335666777766654
No 3
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=9.58 E-value=1.8e+02 Score=19.14 Aligned_cols=71 Identities=13% Similarity=-0.005 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHhcCCCCHHHHHHHHHhchHHHHHhhcccchHHhhhhheeecccchhhhhhHHHHHHHHHHHHhhccc
Q 029965 82 GPLDLFVFFTYMGFSTGKNVAQVKEDLKRDFLPALVLEGGIWPIVQVANFRYVPVRYQLLYVNIFCLLDSAFLSWVEQQK 161 (184)
Q Consensus 82 aP~~~~~F~~~~~~leG~~~~~~~~~lk~~~~~~l~~~~~vWp~~q~iNF~fVP~~~Rvl~~n~v~~~Wn~yLS~~~~~~ 161 (184)
..+..++--+++.++.|++.+|+.+ |.++-. .+.+. +|+. | ..|..+.|.++-.-++.-.
T Consensus 59 C~is~AsaS~~tel~~Gkt~~ea~~-i~~~~i------------~~~l~---l~p~-R---~~CA~La~~aL~~Al~~y~ 118 (130)
T d1wfza_ 59 CGSAIASSSLATEWVKGKTVEEALT-IKNTDI------------AKELC---LPPV-K---LHCSMLAEDAIKAALADYK 118 (130)
T ss_dssp CHHHHHHHHHHHHHHTTSBHHHHHH-CCHHHH------------HHHHT---CCGG-G---HHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhccCHHHHHh-cCcHHH------------HHHcC---CCcc-h---hhHHHHHHHHHHHHHHHHH
Confidence 3444555555667889999988765 333211 12232 3432 3 5788899999998888777
Q ss_pred hhhhhhhhccc
Q 029965 162 DAAWKQWFTSF 172 (184)
Q Consensus 162 ~~~~~~~~~~~ 172 (184)
...+++..|+.
T Consensus 119 ~k~~~~~~p~~ 129 (130)
T d1wfza_ 119 LKQESKSGPSS 129 (130)
T ss_dssp HHHHCSSCSCC
T ss_pred HhccCccCCCC
Confidence 77777767765
No 4
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM {Lactococcus lactis [TaxId: 1358]}
Probab=7.94 E-value=1.8e+02 Score=18.82 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=27.0
Q ss_pred hhhhhhHHHHHHHHHHhcCCCCHHHHHHHHHhc
Q 029965 79 IIFGPLDLFVFFTYMGFSTGKNVAQVKEDLKRD 111 (184)
Q Consensus 79 ~v~aP~~~~~F~~~~~~leG~~~~~~~~~lk~~ 111 (184)
++-+|+.-..+-+......|.+.+++.+++++-
T Consensus 87 ii~~p~tegal~Aa~~a~~g~~leeI~~~~~~~ 119 (123)
T d3ct6a1 87 IFNVPLIEGAYTASALLEAGATFEAIKEQLEKM 119 (123)
T ss_dssp ECCSCHHHHHHHHHHHHHTTCCHHHHHHHHGGG
T ss_pred EEcCchHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 356777777888888889999999999998763
No 5
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.36 E-value=49 Score=15.89 Aligned_cols=15 Identities=7% Similarity=0.084 Sum_probs=9.8
Q ss_pred hhcccchHHhhhhhe
Q 029965 118 LEGGIWPIVQVANFR 132 (184)
Q Consensus 118 ~~~~vWp~~q~iNF~ 132 (184)
+-|.+|.....+.|+
T Consensus 6 aiw~fw~ffalli~y 20 (26)
T d1rzhh2 6 AIYSFWIFLAGLIYY 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457777777666554
No 6
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=5.32 E-value=1.9e+02 Score=23.64 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHHHHHhhccchhhhh
Q 029965 141 LYVNIFCLLDSAFLSWVEQQKDAAWK 166 (184)
Q Consensus 141 l~~n~v~~~Wn~yLS~~~~~~~~~~~ 166 (184)
++...+-+++|.+.|..+.++.+++.
T Consensus 464 ~~~g~l~f~~nl~~s~~~~~~~~~~~ 489 (549)
T d1xmea1 464 LLVALLLFIYGLFSVLLSRERKPELA 489 (549)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 56677889999999999888765544
No 7
>d1dmua_ c.52.1.4 (A:) Restriction endonuclease BglI {Bacillus subtilis [TaxId: 1423]}
Probab=4.93 E-value=90 Score=23.26 Aligned_cols=9 Identities=22% Similarity=0.110 Sum_probs=6.6
Q ss_pred cccccccCC
Q 029965 172 FHSLEERGG 180 (184)
Q Consensus 172 ~~~~~~~~~ 180 (184)
-|||||||-
T Consensus 65 NYPPe~RGr 73 (299)
T d1dmua_ 65 NYPPLDRGK 73 (299)
T ss_dssp TSCCCCCSS
T ss_pred cCChhHcCc
Confidence 478888873
No 8
>d1ohua_ f.1.4.1 (A:) Apoptosis regulator ced-9 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=4.87 E-value=1.4e+02 Score=20.50 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=14.5
Q ss_pred CCcccHHHHHHHHHhcccc
Q 029965 22 KFKVNWKRVAVTSSFGFGF 40 (184)
Q Consensus 22 ~~~~D~~Rt~r~~~~G~~~ 40 (184)
...++|.|.+.+..||+.+
T Consensus 93 ~~ginWGRIVal~aF~g~l 111 (172)
T d1ohua_ 93 QSPMSYGRLIGLISFGGFV 111 (172)
T ss_dssp --CCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 4568999999999988753
No 9
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.70 E-value=2.7e+02 Score=15.63 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=25.3
Q ss_pred cCCCCcccHHHHHHHHHhcccchhhHHHHHHHHH
Q 029965 19 ADEKFKVNWKRVAVTSSFGFGFVGPVGHFWYEGL 52 (184)
Q Consensus 19 ~~~~~~~D~~Rt~r~~~~G~~~~gP~~h~Wy~~L 52 (184)
.+++..=.+.+++..+..|.++.|-+.+.-|-.+
T Consensus 15 ~~KP~~~Ef~~ia~v~~iG~~i~G~IGf~I~li~ 48 (56)
T d1rh5b_ 15 LKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPA 48 (56)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555678899999999998888877766544
No 10
>d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}
Probab=4.62 E-value=4e+02 Score=16.24 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHh
Q 029965 42 GPVGHFWYEGLDRFI 56 (184)
Q Consensus 42 gP~~h~Wy~~Ldr~~ 56 (184)
||- |+|.++|-+.
T Consensus 13 GPA--f~~~~~ea~~ 25 (104)
T d2ahra1 13 SPA--YIYLFIEALA 25 (104)
T ss_dssp HHH--HHHHHHHHHH
T ss_pred hHH--HHHHHHHHHH
Confidence 675 6777777665
Done!