Query 029966
Match_columns 184
No_of_seqs 207 out of 569
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 06:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02309 AUX_IAA: AUX/IAA fami 100.0 6.6E-65 1.4E-69 425.2 0.3 171 11-183 1-213 (215)
2 PF00564 PB1: PB1 domain; Int 97.8 5.1E-05 1.1E-09 53.7 5.7 68 90-169 3-71 (84)
3 smart00666 PB1 PB1 domain. Pho 97.6 0.00035 7.6E-09 49.4 7.3 65 91-168 4-69 (81)
4 cd06407 PB1_NLP A PB1 domain i 97.6 0.00031 6.7E-09 51.8 6.6 54 91-156 3-56 (82)
5 cd06398 PB1_Joka2 The PB1 doma 97.5 0.00037 8.1E-09 52.4 6.5 59 90-158 2-63 (91)
6 cd05992 PB1 The PB1 domain is 97.4 0.0009 2E-08 46.9 7.2 66 90-168 2-69 (81)
7 cd06396 PB1_NBR1 The PB1 domai 97.1 0.0016 3.5E-08 48.4 6.2 53 91-156 3-55 (81)
8 cd06401 PB1_TFG The PB1 domain 97.0 0.0058 1.3E-07 45.6 7.9 73 91-173 3-79 (81)
9 cd06409 PB1_MUG70 The MUG70 pr 96.5 0.0058 1.3E-07 45.8 5.2 51 98-156 7-59 (86)
10 cd06397 PB1_UP1 Uncharacterize 96.4 0.011 2.4E-07 44.3 5.9 66 91-169 3-69 (82)
11 cd06404 PB1_aPKC PB1 domain is 96.3 0.01 2.2E-07 44.5 5.5 54 91-156 3-56 (83)
12 cd06403 PB1_Par6 The PB1 domai 96.0 0.017 3.6E-07 43.2 5.2 68 91-169 3-71 (80)
13 cd06402 PB1_p62 The PB1 domain 95.2 0.097 2.1E-06 39.4 6.9 58 90-157 2-64 (87)
14 cd06408 PB1_NoxR The PB1 domai 94.5 0.13 2.8E-06 38.8 5.8 65 89-168 3-68 (86)
15 cd06399 PB1_P40 The PB1 domain 83.6 1.8 4E-05 33.1 3.9 39 104-155 22-60 (92)
16 cd06406 PB1_P67 A PB1 domain i 67.0 26 0.00057 26.1 6.1 66 89-168 3-69 (80)
17 PF10411 DsbC_N: Disulfide bon 58.9 8.2 0.00018 26.2 2.1 17 142-158 34-50 (57)
18 cd06395 PB1_Map2k5 PB1 domain 58.7 20 0.00042 27.3 4.2 49 96-156 9-57 (91)
19 COG0219 CspR Predicted rRNA me 42.3 12 0.00027 31.1 1.0 76 96-181 48-132 (155)
20 PRK11430 putative CoA-transfer 41.9 25 0.00053 32.3 3.0 66 101-169 197-268 (381)
21 PF06463 Mob_synth_C: Molybden 38.1 82 0.0018 24.5 5.0 67 102-175 15-83 (128)
22 PF00788 RA: Ras association ( 37.2 1.1E+02 0.0024 21.1 5.2 68 89-165 3-76 (93)
23 PF12426 DUF3674: RNA dependen 35.6 23 0.00049 23.5 1.3 29 115-148 6-36 (41)
24 PF09582 AnfO_nitrog: Iron onl 33.8 43 0.00092 28.6 3.0 25 137-161 17-41 (202)
25 PF14468 DUF4427: Protein of u 33.5 35 0.00076 27.7 2.3 57 89-147 57-121 (132)
26 PF11576 DUF3236: Protein of u 31.0 19 0.00042 29.9 0.4 16 12-27 94-109 (154)
27 PF02013 CBM_10: Cellulose or 25.5 21 0.00046 22.8 -0.2 13 141-153 15-27 (36)
28 PRK13361 molybdenum cofactor b 25.2 2.4E+02 0.0053 24.9 6.4 74 94-175 188-266 (329)
29 KOG3938 RGS-GAIP interacting p 24.9 1.2E+02 0.0025 28.0 4.3 74 96-182 62-142 (334)
30 cd00771 ThrRS_core Threonyl-tR 24.5 26 0.00056 30.7 0.1 54 88-151 209-262 (298)
31 PF07929 PRiA4_ORF3: Plasmid p 20.6 1.2E+02 0.0026 24.4 3.2 38 89-126 5-44 (179)
32 PF09676 TraV: Type IV conjuga 20.5 64 0.0014 24.3 1.5 19 140-158 92-110 (119)
33 PF14688 DUF4461: Domain of un 20.1 67 0.0014 29.0 1.8 23 146-168 92-117 (313)
No 1
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=100.00 E-value=6.6e-65 Score=425.18 Aligned_cols=171 Identities=54% Similarity=0.902 Sum_probs=6.0
Q ss_pred CCccccccccCCCCCCChh--------hhhhcCCCCCCCCCCCCC-----------------C--------CCCCccccc
Q 029966 11 LNLKATELRLGLPGSDENE--------QQTRNNKRSLPDTPDDLD-----------------T--------KDKSDEAAS 57 (184)
Q Consensus 11 l~l~~TELrLGLPG~~~~~--------~~~~~~Kr~~~~~~~~~~-----------------~--------~~~~~~~~p 57 (184)
|||++|||||||||+.+++ ....++||.|+++.+... . .......+|
T Consensus 1 ln~~~TELrLGLPG~~~~~~~~~~~~~~~~~~~kR~F~~aid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 80 (215)
T PF02309_consen 1 LNLKATELRLGLPGSESPDASSSSSSKKSSSGNKRGFSEAIDSSSSNSQSSSSSSSDSSSSSSSSSTSSSSSDSSSSSPP 80 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCchhhhhcccCCCCCCCCcccccccccccCcccccchhhhhhcccccccccccccccCcccccccccccccccccCCCC
Confidence 7999999999999986442 223568999998532110 0 001222345
Q ss_pred cccccccCCCCcchhhhhhhhcccccCCCCcceeEEEEcCccccceeecCCCCChHHHHHHHHhhhcc-cccccc-----
Q 029966 58 VAKAQVVGWPPIRSYRKNSLQQKKNEGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKF-TVGVYS----- 131 (184)
Q Consensus 58 ~~k~qvVGWPPVrs~Rkn~~~~~~~~~~~~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~-~~g~~~----- 131 (184)
.+++|+||||||++||+|.+...+. ...++||||+|||+||||||||++|+||++|+.+|++||++ .|+++.
T Consensus 81 ~~~~~~vgwpp~~s~r~n~~~~~~~--~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~ 158 (215)
T PF02309_consen 81 ASKAQVVGWPPVRSFRKNSLSEKQS--SSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLN 158 (215)
T ss_dssp -----BTTBS----S-----------------------------------------------------------------
T ss_pred cccccccCCCccccccccccccccc--ccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCcccccccccc
Confidence 6789999999999999998763221 12479999999999999999999999999999999999954 344221
Q ss_pred ---cccCCCCCcceeEEecCCCCeEEecCcchhhHhhccceeEEecCCcccCCCC
Q 029966 132 ---EREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEARGLTA 183 (184)
Q Consensus 132 ---~~~~~~~s~~~ltYeDkdGDwMLVGDvPW~mFv~svkRLrImk~sea~gl~~ 183 (184)
..+..++++|+|||||+||||||||||||+|||++|||||||+.+|++||+|
T Consensus 159 ~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~ 213 (215)
T PF02309_consen 159 ESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAP 213 (215)
T ss_dssp -------------------------------------------------------
T ss_pred chhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCC
Confidence 1122467899999999999999999999999999999999999999999997
No 2
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=97.82 E-value=5.1e-05 Score=53.65 Aligned_cols=68 Identities=22% Similarity=0.375 Sum_probs=55.5
Q ss_pred eeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecC-cchhhHhhccc
Q 029966 90 YVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGD-VPWEMFMSSCK 168 (184)
Q Consensus 90 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~svk 168 (184)
-||++..|. +=|.+.+..--+|.+|...++..|++. + ..+.+.|.|.||||..+-+ .=|++.++.++
T Consensus 3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~-~----------~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~ 70 (84)
T PF00564_consen 3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL-D----------EDFQLKYKDEDGDLVTISSDEDLQEAIEQAK 70 (84)
T ss_dssp EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS-T----------SSEEEEEEETTSSEEEESSHHHHHHHHHHHH
T ss_pred EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC-C----------ccEEEEeeCCCCCEEEeCCHHHHHHHHHHHH
Confidence 479999997 333588888889999999999999985 1 2589999999999998874 45888888775
Q ss_pred e
Q 029966 169 R 169 (184)
Q Consensus 169 R 169 (184)
+
T Consensus 71 ~ 71 (84)
T PF00564_consen 71 E 71 (84)
T ss_dssp H
T ss_pred h
Confidence 3
No 3
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=97.61 E-value=0.00035 Score=49.36 Aligned_cols=65 Identities=18% Similarity=0.344 Sum_probs=52.5
Q ss_pred eEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecC-cchhhHhhccc
Q 029966 91 VKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGD-VPWEMFMSSCK 168 (184)
Q Consensus 91 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~svk 168 (184)
|||.-.|. -|.+-+..--+|.+|...+.+.|++.. ..+.+.|+|.||||..+.+ .=|.+.++.++
T Consensus 4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~~~-----------~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGLDN-----------QSFTLKYQDEDGDLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCCCC-----------CCeEEEEECCCCCEEEecCHHHHHHHHHHHH
Confidence 68887554 788888889999999999999999751 3589999999999987654 57777777665
No 4
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=97.55 E-value=0.00031 Score=51.78 Aligned_cols=54 Identities=26% Similarity=0.475 Sum_probs=44.7
Q ss_pred eEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec
Q 029966 91 VKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG 156 (184)
Q Consensus 91 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG 156 (184)
|||+..|. .+.+-|..--+|++|.+.+.++|++. +.+.|.|.|.|.||||.++-
T Consensus 3 vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~----------~~~~f~LkY~Ddegd~v~lt 56 (82)
T cd06407 3 VKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLD----------DMSAFDLKYLDDDEEWVLLT 56 (82)
T ss_pred EEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCC----------CCCeeEEEEECCCCCeEEee
Confidence 89999997 55566666669999999999999975 12469999999999998763
No 5
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=97.49 E-value=0.00037 Score=52.38 Aligned_cols=59 Identities=25% Similarity=0.334 Sum_probs=45.8
Q ss_pred eeEEEEcCccccceeecC---CCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecCc
Q 029966 90 YVKVSMDGAPYLRKIDLK---LYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDV 158 (184)
Q Consensus 90 ~VKV~MdG~pigRKVDL~---~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv 158 (184)
-|||.-+|.-+=-++++. .--+|++|...+.+.|.+. ...+|++.|.|.||||..+-..
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~----------~~~~~~l~Y~Dedgd~V~l~~D 63 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS----------PDADLSLTYTDEDGDVVTLVDD 63 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC----------CCCcEEEEEECCCCCEEEEccH
Confidence 489999998333344443 3579999999999999875 2357999999999999987543
No 6
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=97.40 E-value=0.0009 Score=46.93 Aligned_cols=66 Identities=20% Similarity=0.375 Sum_probs=53.3
Q ss_pred eeEEEEcCccccceeecC-CCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecC-cchhhHhhcc
Q 029966 90 YVKVSMDGAPYLRKIDLK-LYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGD-VPWEMFMSSC 167 (184)
Q Consensus 90 ~VKV~MdG~pigRKVDL~-~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~sv 167 (184)
-|||+-.|. -|.+=+. .--+|++|...|.+.|++.. ..+.+.|.|.||||..+.+ .=|++.++.+
T Consensus 2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~~-----------~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~ 68 (81)
T cd05992 2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLDA-----------VSFKLKYPDEDGDLVTISSDEDLEEAIEEA 68 (81)
T ss_pred cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCCC-----------CcEEEEeeCCCCCEEEeCCHHHHHHHHHHH
Confidence 378888875 4555555 88899999999999999752 2589999999999999887 6777777776
Q ss_pred c
Q 029966 168 K 168 (184)
Q Consensus 168 k 168 (184)
+
T Consensus 69 ~ 69 (81)
T cd05992 69 R 69 (81)
T ss_pred h
Confidence 5
No 7
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=97.12 E-value=0.0016 Score=48.45 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=46.0
Q ss_pred eEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec
Q 029966 91 VKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG 156 (184)
Q Consensus 91 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG 156 (184)
|||.-.|.-+--+++-+..-+|++|...+.++|++. .+.+.|-|.||||.++-
T Consensus 3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~-------------~f~lKYlDde~e~v~ls 55 (81)
T cd06396 3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN-------------DIQIKYVDEENEEVSVN 55 (81)
T ss_pred EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC-------------cceeEEEcCCCCEEEEE
Confidence 789999986666777777889999999999999987 27999999999998863
No 8
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=96.96 E-value=0.0058 Score=45.61 Aligned_cols=73 Identities=23% Similarity=0.451 Sum_probs=50.7
Q ss_pred eEEEEcCccccceeecCCCC-ChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecCc---chhhHhhc
Q 029966 91 VKVSMDGAPYLRKIDLKLYN-GYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDV---PWEMFMSS 166 (184)
Q Consensus 91 VKV~MdG~pigRKVDL~~~~-sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv---PW~mFv~s 166 (184)
+|+.-.|. -|++=+..-. +|.+|...+++.|....+ ....+.+.|.|.|||+.-+.+. -|..-+..
T Consensus 3 iK~~~g~D--iR~~~~~~~~~t~~~L~~~v~~~F~~~~~--------~~~~flIKYkD~dGDlVTIts~~dL~~A~~~~~ 72 (81)
T cd06401 3 LKAQLGDD--IRRIPIHNEDITYDELLLMMQRVFRGKLG--------SSDDVLIKYKDEDGDLITIFDSSDLSFAIQCSR 72 (81)
T ss_pred EEEEeCCe--EEEEeccCccccHHHHHHHHHHHhccccC--------CcccEEEEEECCCCCEEEeccHHHHHHHHhcCc
Confidence 67777665 4554444423 999999999999996533 2357999999999999999875 33333334
Q ss_pred cceeEEe
Q 029966 167 CKRLRIM 173 (184)
Q Consensus 167 vkRLrIm 173 (184)
.++|+|.
T Consensus 73 ~~~l~~~ 79 (81)
T cd06401 73 ILKLTLF 79 (81)
T ss_pred ceEEEEe
Confidence 4455543
No 9
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=96.52 E-value=0.0058 Score=45.85 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=40.0
Q ss_pred ccccceeecC--CCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec
Q 029966 98 APYLRKIDLK--LYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG 156 (184)
Q Consensus 98 ~pigRKVDL~--~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG 156 (184)
+|-||.+=++ ...|+.+|..++.+-|+...- ....|.|.|.|.||||.+.-
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~--------~~~~~~L~YlDDEgD~VllT 59 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDF--------ETHLYALSYVDDEGDIVLIT 59 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc--------cCCcccEEEEcCCCCEEEEe
Confidence 4567765554 378999999999999997621 13469999999999999864
No 10
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=96.39 E-value=0.011 Score=44.29 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=52.2
Q ss_pred eEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec-CcchhhHhhccce
Q 029966 91 VKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG-DVPWEMFMSSCKR 169 (184)
Q Consensus 91 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG-DvPW~mFv~svkR 169 (184)
.||+-+|. .|++....-=+|..|.+.|+.+|.+.. . .+.+||.|.|||..-+- |.=.+.|.+-..+
T Consensus 3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~----------~-~~~vtYiDeD~D~ITlssd~eL~d~~~~~~~ 69 (82)
T cd06397 3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE----------I-KVGVTYIDNDNDEITLSSNKELQDFYRLSHR 69 (82)
T ss_pred EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh----------h-HeEEEEEcCCCCEEEecchHHHHHHHHhccc
Confidence 48888897 899999999999999999999999871 1 27999999999987554 4456666554333
No 11
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=96.32 E-value=0.01 Score=44.48 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=44.0
Q ss_pred eEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec
Q 029966 91 VKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG 156 (184)
Q Consensus 91 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG 156 (184)
+|++-.|.-.--.+|. .-+|++|.+.+.+||.+.. +..|++.|.|.|||-.-+.
T Consensus 3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~~----------~q~ft~kw~DEEGDp~tiS 56 (83)
T cd06404 3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFHN----------DQPFTLKWIDEEGDPCTIS 56 (83)
T ss_pred EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCCC----------CCcEEEEEECCCCCceeec
Confidence 7999999855555555 7789999999999999862 2359999999999987654
No 12
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=96.01 E-value=0.017 Score=43.15 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=49.9
Q ss_pred eEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec-CcchhhHhhccce
Q 029966 91 VKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG-DVPWEMFMSSCKR 169 (184)
Q Consensus 91 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG-DvPW~mFv~svkR 169 (184)
||...|..=-=-.+|.....+|++++.-|+.||.+. +..|++-|.|.+||.+-+- |+-+..=+++++.
T Consensus 3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~-----------~~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~p 71 (80)
T cd06403 3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIP-----------NVDFLIGYTDPHGDLLPINNDDNFLKALSSANP 71 (80)
T ss_pred eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCC-----------CCcEEEEEeCCCCCEecccCcHHHHHHHHcCCC
Confidence 666666652222455555699999999999999976 1369999999999999764 5566666677763
No 13
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=95.23 E-value=0.097 Score=39.38 Aligned_cols=58 Identities=19% Similarity=0.436 Sum_probs=42.6
Q ss_pred eeEEEEcC---ccccceeec--CCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecC
Q 029966 90 YVKVSMDG---APYLRKIDL--KLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGD 157 (184)
Q Consensus 90 ~VKV~MdG---~pigRKVDL--~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD 157 (184)
.||.+..| .+=-|++=| ....+|++|...+.++|... .+..|++.|.|.|||..-+..
T Consensus 2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l----------~~~~ftlky~DeeGDlvtIss 64 (87)
T cd06402 2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSL----------RGKNFQLFWKDEEGDLVAFSS 64 (87)
T ss_pred eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHcccc----------CCCcEEEEEECCCCCEEeecC
Confidence 56777666 233344444 66679999999999999753 124699999999999987654
No 14
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=94.48 E-value=0.13 Score=38.76 Aligned_cols=65 Identities=23% Similarity=0.419 Sum_probs=50.9
Q ss_pred ceeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecCc-chhhHhhcc
Q 029966 89 IYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDV-PWEMFMSSC 167 (184)
Q Consensus 89 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv-PW~mFv~sv 167 (184)
.=|||+-.|. .|-|-+..-=+|++|...+.++|++. ..+++.|.|. ||..-+++- =-++-+.++
T Consensus 3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~~------------~~~~iKykDE-GD~iti~sq~DLd~Ai~~a 67 (86)
T cd06408 3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGFK------------RRLKIKMKDD-GDMITMGDQDDLDMAIDTA 67 (86)
T ss_pred EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCCC------------CceEEEEEcC-CCCccccCHHHHHHHHHHH
Confidence 3589999998 77777778888999999999999985 1489999999 999888764 344444444
Q ss_pred c
Q 029966 168 K 168 (184)
Q Consensus 168 k 168 (184)
|
T Consensus 68 ~ 68 (86)
T cd06408 68 R 68 (86)
T ss_pred H
Confidence 4
No 15
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=83.61 E-value=1.8 Score=33.09 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=32.3
Q ss_pred eecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEe
Q 029966 104 IDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLV 155 (184)
Q Consensus 104 VDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLV 155 (184)
=||+..-+|.+|+.-..+-|... +-++.|.|.|||..-+
T Consensus 22 e~l~~~P~~kdLl~lmr~~f~~~-------------dIaLNYrD~EGDLIRl 60 (92)
T cd06399 22 EDLSSTPLLKDLLELTRREFQRE-------------DIALNYRDAEGDLIRL 60 (92)
T ss_pred cccccCccHHHHHHHHHHHhchh-------------heeeeeecCCCCEEEE
Confidence 37888899999999999999865 3589999999998643
No 16
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=66.97 E-value=26 Score=26.09 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=49.4
Q ss_pred ceeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCC-CeEEecCcchhhHhhcc
Q 029966 89 IYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDG-DWMLVGDVPWEMFMSSC 167 (184)
Q Consensus 89 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdG-DwMLVGDvPW~mFv~sv 167 (184)
--|||+..+ .=-|-...=-+|++|...|.+-+.+. ++ +-+|.|.|.+. +...++|--++.-.+.+
T Consensus 3 ~vvKV~f~~---tIaIrvp~~~~y~~L~~ki~~kLkl~-~e----------~i~LsYkde~s~~~v~l~d~dle~aws~~ 68 (80)
T cd06406 3 YVVKVHFKY---TVAIQVARGLSYATLLQKISSKLELP-AE----------HITLSYKSEASGEDVILSDTNMEDVWSQA 68 (80)
T ss_pred eEEEEEEEE---EEEEEcCCCCCHHHHHHHHHHHhCCC-ch----------hcEEEeccCCCCCccCcChHHHHHHHHhh
Confidence 357999997 34455666678999999999999875 21 35889998774 44444888888888877
Q ss_pred c
Q 029966 168 K 168 (184)
Q Consensus 168 k 168 (184)
+
T Consensus 69 ~ 69 (80)
T cd06406 69 K 69 (80)
T ss_pred c
Confidence 7
No 17
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=58.92 E-value=8.2 Score=26.19 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=14.7
Q ss_pred eeEEecCCCCeEEecCc
Q 029966 142 EPTYEDKDGDWMLVGDV 158 (184)
Q Consensus 142 ~ltYeDkdGDwMLVGDv 158 (184)
.+.|.|.||+.+++|+.
T Consensus 34 ~i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQL 50 (57)
T ss_dssp EEEEEETTSSEEEES-E
T ss_pred eEEEEcCCCCEEEEeEE
Confidence 58999999999999974
No 18
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=58.69 E-value=20 Score=27.35 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=35.7
Q ss_pred cCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec
Q 029966 96 DGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG 156 (184)
Q Consensus 96 dG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG 156 (184)
+|..+--.||....=++.+++.++.+...-. .--..-|||.|||.+-|-
T Consensus 9 ~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~a------------T~tAFeYEDE~gDRITVR 57 (91)
T cd06395 9 NGGAVDWTVQSGPQLLFRDVLDVIGQVLPEA------------TTTAFEYEDEDGDRITVR 57 (91)
T ss_pred CCCcccccccCcccccHHHHHHHHHHhcccc------------cccceeeccccCCeeEec
Confidence 3445666778777788999999988876531 012567999999998874
No 19
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=42.32 E-value=12 Score=31.06 Aligned_cols=76 Identities=26% Similarity=0.411 Sum_probs=48.8
Q ss_pred cCccccceeecCCCCChHHHHHHH---Hhhhccc-ccccccccCCCCCcceeEEecCCCCeEEecCc----chhhH-hhc
Q 029966 96 DGAPYLRKIDLKLYNGYPELLKAL---ENMFKFT-VGVYSEREGYKGSEYEPTYEDKDGDWMLVGDV----PWEMF-MSS 166 (184)
Q Consensus 96 dG~pigRKVDL~~~~sY~eL~~~L---~~MF~~~-~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv----PW~mF-v~s 166 (184)
-|-.|.-+++|..|+++++...+. .++|.++ .|.- -|. -+....||++|-|-. |=+.- -..
T Consensus 48 AGlDY~~~~~l~~h~s~e~fl~~~~~~~rl~~~tt~~~~---------~~~-~~~f~~~d~llFG~Es~GLP~~i~~~~~ 117 (155)
T COG0219 48 AGLDYHEKASLTEHDSLEAFLEAEPIGGRLFALTTKGTT---------TYT-DVSFQKGDYLLFGPESRGLPEEILDAAP 117 (155)
T ss_pred cccchHhhcceEEeCCHHHHHhhccCCceEEEEEecccc---------ccc-cccCCCCCEEEECCCCCCCCHHHHHhCc
Confidence 477799999999999999999999 5688764 2211 111 144456999999976 42222 222
Q ss_pred cceeEEecCCcccCC
Q 029966 167 CKRLRIMKGSEARGL 181 (184)
Q Consensus 167 vkRLrImk~sea~gl 181 (184)
-++|||=-..+++.|
T Consensus 118 ~~~irIPm~~~~RSL 132 (155)
T COG0219 118 DRCIRIPMRPGVRSL 132 (155)
T ss_pred cceEEeccCCCCccc
Confidence 335887554554443
No 20
>PRK11430 putative CoA-transferase; Provisional
Probab=41.93 E-value=25 Score=32.27 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=34.4
Q ss_pred cceeecCCCCChHHHHHHHHhhhcccccccccccCC---CCCcceeEEecCCCCeEEec---CcchhhHhhccce
Q 029966 101 LRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGY---KGSEYEPTYEDKDGDWMLVG---DVPWEMFMSSCKR 169 (184)
Q Consensus 101 gRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~---~~s~~~ltYeDkdGDwMLVG---DvPW~mFv~svkR 169 (184)
|+.||++++.+--.+.....-.+... |....+.+. ...-| =+|+=+|| |+.|+ |--|.-||+...+
T Consensus 197 Gq~VdvSl~~~~~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~p~-~~y~~~DG-~i~i~~~~~~~w~~l~~~lg~ 268 (381)
T PRK11430 197 GAHVDIAMFDATLSFLEHGLMAYIAT-GKSPQRLGNRHPYMAPF-DVFDTQDK-PITICCGNDKLFSALCQALEL 268 (381)
T ss_pred eeEEEeeHHHHHHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCC-CceEcCCC-cEEEEeCCHHHHHHHHHHhCC
Confidence 88899988866433322221111111 211111110 11123 46999999 87774 4478888876554
No 21
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A.
Probab=38.07 E-value=82 Score=24.54 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=30.5
Q ss_pred ceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEe--cCCCCeEEecCcchhhHhhccceeEEecC
Q 029966 102 RKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYE--DKDGDWMLVGDVPWEMFMSSCKRLRIMKG 175 (184)
Q Consensus 102 RKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYe--DkdGDwMLVGDvPW~mFv~svkRLrImk~ 175 (184)
..+--..|-++++++..|++.|......- .. ..-...|. +..|..=++.-+-= .||.+|-||||...
T Consensus 15 ~~~~~~~~~~~~ei~~~l~~~~~~~~~~~---~~---~~pa~~y~~~g~~g~vG~I~~~s~-~FC~~CNRiRlTsd 83 (128)
T PF06463_consen 15 NNWFEEEFVPAQEILERLEERYELLPSEK---RP---NGPARYYRIPGGKGRVGFISPVSN-PFCSSCNRIRLTSD 83 (128)
T ss_dssp SSB-TTTB--HHHHHHHHHHHS-EEEE-----SS---T-SSEEEEETTT--EEEEE-TTTS---GGG--EEEE-TT
T ss_pred CCchhhcCcCHHHHHHHHHHhCCcccccc---cc---CCcceEEEECCCCcEEEEEeCCCC-CCCCcCCEEEEccC
Confidence 33445788899999999999998642111 11 11222333 33333333332222 49999999999764
No 22
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=37.24 E-value=1.1e+02 Score=21.07 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=49.8
Q ss_pred ceeEEEEcCccc---cceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeE--EecCCCCeEEecC-cchhh
Q 029966 89 IYVKVSMDGAPY---LRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPT--YEDKDGDWMLVGD-VPWEM 162 (184)
Q Consensus 89 ~~VKV~MdG~pi---gRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~lt--YeDkdGDwMLVGD-vPW~m 162 (184)
.++||++....- -+.|=++....-.+++.++.+.|++. . +..+|.|. -........|-.| .|+..
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~-~--------~~~~y~L~~~~~~~~~er~L~~~E~pl~i 73 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLA-E--------DPSDYCLVEVEESGGEERPLDDDECPLQI 73 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTS-S--------SGGGEEEEEEECTTTEEEEETTTSBHHHH
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCC-C--------CCCCEEEEEEEcCCCEEEEcCCCCchHHH
Confidence 478999887642 67888899999999999999999982 2 24579994 4455566666543 47776
Q ss_pred Hhh
Q 029966 163 FMS 165 (184)
Q Consensus 163 Fv~ 165 (184)
+..
T Consensus 74 ~~~ 76 (93)
T PF00788_consen 74 QLQ 76 (93)
T ss_dssp HHT
T ss_pred HHh
Confidence 654
No 23
>PF12426 DUF3674: RNA dependent RNA polymerase; InterPro: IPR024378 This domain is found in the RNA-directed RNA polymerase. It is located towards the N terminus and is approximately 40 amino acids in length. There is a conserved MFNLKF sequence motif. There are two completely conserved residues (E and P) that may be functionally important.
Probab=35.58 E-value=23 Score=23.50 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=17.2
Q ss_pred HHHHHHhhhcc--cccccccccCCCCCcceeEEecC
Q 029966 115 LLKALENMFKF--TVGVYSEREGYKGSEYEPTYEDK 148 (184)
Q Consensus 115 L~~~L~~MF~~--~~g~~~~~~~~~~s~~~ltYeDk 148 (184)
=..+||.||.. .++... ...=|++.|.+-
T Consensus 6 ER~aLEAMFNLKFhi~~~k-----~~~y~IP~Y~~~ 36 (41)
T PF12426_consen 6 ERSALEAMFNLKFHIGGPK-----TQPYYIPDYRGI 36 (41)
T ss_pred HHHHHHHHhceeeeeCCcc-----cccccCCCCCCc
Confidence 36799999995 454321 123456666653
No 24
>PF09582 AnfO_nitrog: Iron only nitrogenase protein AnfO (AnfO_nitrog); InterPro: IPR014287 Proteins in this entry include Anf1 from Rhodobacter capsulatus (Rhodopseudomonas capsulata) and AnfO from Azotobacter vinelandii. They are found exclusively in species which contain the iron-only nitrogenase, and are encoded immediately downstream of the structural genes for the nitrogenase enzyme in these species.
Probab=33.75 E-value=43 Score=28.58 Aligned_cols=25 Identities=28% Similarity=0.807 Sum_probs=23.0
Q ss_pred CCCcceeEEecCCCCeEEecCcchh
Q 029966 137 KGSEYEPTYEDKDGDWMLVGDVPWE 161 (184)
Q Consensus 137 ~~s~~~ltYeDkdGDwMLVGDvPW~ 161 (184)
...+++.+|+..+|+|-++.+.|..
T Consensus 17 ~e~G~v~vy~~~~g~W~~~~e~~f~ 41 (202)
T PF09582_consen 17 YEPGFVRVYEKDDGKWKVIREIPFE 41 (202)
T ss_pred CCCcEEEEEECCCCceEEeEEEEec
Confidence 4678999999999999999999998
No 25
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=33.53 E-value=35 Score=27.71 Aligned_cols=57 Identities=26% Similarity=0.325 Sum_probs=34.4
Q ss_pred ceeEEEEcCccccceeecCCCC----Ch----HHHHHHHHhhhcccccccccccCCCCCcceeEEec
Q 029966 89 IYVKVSMDGAPYLRKIDLKLYN----GY----PELLKALENMFKFTVGVYSEREGYKGSEYEPTYED 147 (184)
Q Consensus 89 ~~VKV~MdG~pigRKVDL~~~~----sY----~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeD 147 (184)
.-|||+.+|. |+=+||+---+ -= ..|+..|..-|+++.|-++- .|-..-+-++.|++
T Consensus 57 grV~v~~eGR-YLl~l~~~~s~~plr~kE~~ak~vA~~L~~rF~vea~yfSV-~gs~~~D~IP~Y~~ 121 (132)
T PF14468_consen 57 GRVKVNKEGR-YLLDLDLFDSDWPLRKKEAMAKHVAGWLRHRFGVEAGYFSV-LGSQDYDGIPSYNG 121 (132)
T ss_pred CceeeccCce-eeeecccccCCCchHHHHHHHHHHHHHHHHHhCcceeEEEe-cCCCCCCcCcccCC
Confidence 5799999998 88777764321 11 24556667778876554431 12233455777764
No 26
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=30.96 E-value=19 Score=29.89 Aligned_cols=16 Identities=44% Similarity=0.711 Sum_probs=9.4
Q ss_pred CccccccccCCCCCCC
Q 029966 12 NLKATELRLGLPGSDE 27 (184)
Q Consensus 12 ~l~~TELrLGLPG~~~ 27 (184)
+|=..-=|||.||+++
T Consensus 94 DlvIARGRLGvPGSGS 109 (154)
T PF11576_consen 94 DLVIARGRLGVPGSGS 109 (154)
T ss_dssp SEEEEEEE-SSTTS-E
T ss_pred cEEEEcccccCCCCcc
Confidence 3444445999999874
No 27
>PF02013 CBM_10: Cellulose or protein binding domain; InterPro: IPR002883 This domain is found in two distinct sets of proteins with different functions. Those found in aerobic bacteria bind cellulose (or other carbohydrates); but in anaerobic fungi they are protein binding domains, referred to as dockerin domains or docking domains. They are believed to be responsible for the assembly of a multiprotein cellulase/hemicellulase complex, similar to the cellulosome found in certain anaerobic bacteria. The recycling of photosynthetically fixed carbon in plant cell walls is a key microbial process. Enzyme systems that attack the plant cell wall contain noncatalytic carbohydrate-binding modules that mediate attachment to this composite structure and play a pivotal role in maximizing the hydrolytic process. In anaerobes, the degradation is carried out by a high molecular weight, multifunctional complex termed the cellulosome. This consists of a number of independent enzyme components, each of which contains a conserved 40-residue dockerin domain, which functions to bind the enzyme to a cohesin domain within the scaffoldin protein [, ]. In anaerobic bacteria that degrade plant cell walls, exemplified by Clostridium thermocellum, the dockerin domains of the catalytic polypeptides can bind equally well to any cohesin from the same organism. More recently, anaerobic fungi, typified by Piromyces equi, have been suggested to also synthesise a cellulosome complex, although the dockerin sequences of the bacterial and fungal enzymes are completely different []. For example, the fungal enzymes contain one, two or three copies of the dockerin sequence in tandem within the catalytic polypeptide. In contrast, all the C. thermocellum cellulosome catalytic components contain a single dockerin domain. The anaerobic bacterial dockerins are homologous to EF hands (calcium-binding motifs) and require calcium for activity whereas the fungal dockerin does not require calcium. Finally, the interaction between cohesin and dockerin appears to be species specific in bacteria, there is almost no species specificity of binding within fungal species and no identified sites that distinguish different species. The structure of dockerin from P. equi contains two helical stretches and four short beta-strands which form an antiparallel sheet structure adjacent to an additional short twisted parallel strand. The N- and C-termini are adjacent to each other. Aerobic bacteria contain related regions, however these appear to function as cellulose/carbohydrate binding domains.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2J4M_A 2J4N_A 1E8R_A 1QLD_A 1E8P_A 1E8Q_A.
Probab=25.48 E-value=21 Score=22.78 Aligned_cols=13 Identities=46% Similarity=0.930 Sum_probs=9.4
Q ss_pred ceeEEecCCCCeE
Q 029966 141 YEPTYEDKDGDWM 153 (184)
Q Consensus 141 ~~ltYeDkdGDwM 153 (184)
-.+.|.|.+|+|=
T Consensus 15 ~~v~y~d~~g~WG 27 (36)
T PF02013_consen 15 CEVVYTDDDGGWG 27 (36)
T ss_dssp S--SEEETTEEEE
T ss_pred CceEEcCCCCCEe
Confidence 3789999999983
No 28
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=25.18 E-value=2.4e+02 Score=24.86 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=44.0
Q ss_pred EEcCcccccee--ecCCCCChHHHHHHHHhhhcc-cccccccccCCCCCcceeEEe--cCCCCeEEecCcchhhHhhccc
Q 029966 94 SMDGAPYLRKI--DLKLYNGYPELLKALENMFKF-TVGVYSEREGYKGSEYEPTYE--DKDGDWMLVGDVPWEMFMSSCK 168 (184)
Q Consensus 94 ~MdG~pigRKV--DL~~~~sY~eL~~~L~~MF~~-~~g~~~~~~~~~~s~~~ltYe--DkdGDwMLVGDvPW~mFv~svk 168 (184)
..+-.|+|+-- .-..+=+.+++...|++.|.. .+.. .. .+ -.-.|. |..|-.=++.-+-.. ||.+|-
T Consensus 188 ~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~---~~--~~--~~~~~~~~~~~~~ig~I~~~s~~-fC~~Cn 259 (329)
T PRK13361 188 FIEEMPLGEIDERRRARHCSSDEVRAIIETRYPLTPSNK---RT--GG--PARYYTMADSPIHIGFISPHSHN-FCHECN 259 (329)
T ss_pred EEecccCCCccchhhccCcCHHHHHHHHHHhCCcccCCC---CC--CC--CCeEEEECCCCeEEEEEcCCCcc-ccccCC
Confidence 56667888722 234566889999999998764 2210 01 11 111343 333444455544454 999999
Q ss_pred eeEEecC
Q 029966 169 RLRIMKG 175 (184)
Q Consensus 169 RLrImk~ 175 (184)
||||-..
T Consensus 260 r~rlt~~ 266 (329)
T PRK13361 260 RVRVTAE 266 (329)
T ss_pred eEEEccC
Confidence 9999764
No 29
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.85 E-value=1.2e+02 Score=28.00 Aligned_cols=74 Identities=23% Similarity=0.416 Sum_probs=52.6
Q ss_pred cCccccceeecCCCCChHHHHHHHHhhhcccccc--cccccCCCCCcceeEEecCCCCeEEecCcchhhHh-----hccc
Q 029966 96 DGAPYLRKIDLKLYNGYPELLKALENMFKFTVGV--YSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFM-----SSCK 168 (184)
Q Consensus 96 dG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~--~~~~~~~~~s~~~ltYeDkdGDwMLVGDvPW~mFv-----~svk 168 (184)
.|.|.|| +.-|++-+||++.++.-|.+.-.. +|. +| .+. -|=+.||-|-.-.+.|+ .-.|
T Consensus 62 HGSptg~---Ie~fsnv~ELY~kIAe~F~Is~~dIlfcT---lN--shK-----vDM~~llgGqigleDfiFAHvkGq~k 128 (334)
T KOG3938|consen 62 HGSPTGR---IEGFSNVRELYQKIAEAFDISPDDILFCT---LN--SHK-----VDMKRLLGGQIGLEDFIFAHVKGQAK 128 (334)
T ss_pred cCCccce---ecccccHHHHHHHHHHHhcCCccceEEEe---cC--CCc-----ccHHHHhcCccChhhhhhhhhcCcce
Confidence 5667787 457999999999999999974111 110 00 011 24455888988888885 3677
Q ss_pred eeEEecCCcccCCC
Q 029966 169 RLRIMKGSEARGLT 182 (184)
Q Consensus 169 RLrImk~sea~gl~ 182 (184)
-++|+|+.++-||.
T Consensus 129 Ev~v~KsedalGlT 142 (334)
T KOG3938|consen 129 EVEVVKSEDALGLT 142 (334)
T ss_pred eEEEEecccccceE
Confidence 89999999998874
No 30
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=24.53 E-value=26 Score=30.72 Aligned_cols=54 Identities=22% Similarity=0.257 Sum_probs=35.5
Q ss_pred cceeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCC
Q 029966 88 GIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGD 151 (184)
Q Consensus 88 ~~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGD 151 (184)
-.|....=+|+-||-|||..+.++ |.+-+.|..-++ +.....-|-++|.|+||.
T Consensus 209 ~~~~~~~g~~afygpkid~~~~d~-------~gr~~q~~t~ql---d~~~~~~f~l~y~~~~~~ 262 (298)
T cd00771 209 LPYEINEGEGAFYGPKIDFHVKDA-------LGREWQCSTIQL---DFNLPERFDLTYIGEDGE 262 (298)
T ss_pred CCceECCCCcccccceEEEEEEeC-------CCCeeecceeEe---eccChhhcCCEEEccCCC
Confidence 357777778899999999887653 444454421122 112345788999999986
No 31
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=20.56 E-value=1.2e+02 Score=24.41 Aligned_cols=38 Identities=24% Similarity=0.459 Sum_probs=30.3
Q ss_pred ceeEEEEcCc--cccceeecCCCCChHHHHHHHHhhhccc
Q 029966 89 IYVKVSMDGA--PYLRKIDLKLYNGYPELLKALENMFKFT 126 (184)
Q Consensus 89 ~~VKV~MdG~--pigRKVDL~~~~sY~eL~~~L~~MF~~~ 126 (184)
--+||...|. +|=|.|.+..--+..+|-.+|+..|+..
T Consensus 5 y~lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~afgw~ 44 (179)
T PF07929_consen 5 YQLKVSLKGSKPPIWRRIEVPADITLADLHEVIQAAFGWD 44 (179)
T ss_dssp EEEEEEETT-SS-EEEEEEEETT-BHHHHHHHHHHHTT--
T ss_pred EEEEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHHHhCcC
Confidence 3578988884 8999999999999999999999999853
No 32
>PF09676 TraV: Type IV conjugative transfer system lipoprotein (TraV); InterPro: IPR014118 This entry represents TraV, a component of a conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK [, , ]. This protein contains three conserved cysteines in the N-terminal half.
Probab=20.51 E-value=64 Score=24.31 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=16.0
Q ss_pred cceeEEecCCCCeEEecCc
Q 029966 140 EYEPTYEDKDGDWMLVGDV 158 (184)
Q Consensus 140 ~~~ltYeDkdGDwMLVGDv 158 (184)
=|+.-|+|.+||+..-|.|
T Consensus 92 iwiaP~~D~~g~l~~~~~V 110 (119)
T PF09676_consen 92 IWIAPWEDADGDLHDPGYV 110 (119)
T ss_pred EEEeeeECCCCCEeccceE
Confidence 4899999999999877654
No 33
>PF14688 DUF4461: Domain of unknown function (DUF4461)
Probab=20.13 E-value=67 Score=29.05 Aligned_cols=23 Identities=43% Similarity=0.820 Sum_probs=17.4
Q ss_pred ecCCCCeEE-ecCcc--hhhHhhccc
Q 029966 146 EDKDGDWML-VGDVP--WEMFMSSCK 168 (184)
Q Consensus 146 eDkdGDwML-VGDvP--W~mFv~svk 168 (184)
.|.+|+.|| +|||| |..|++.+.
T Consensus 92 v~~~G~v~L~~~Dv~~~W~~~l~~l~ 117 (313)
T PF14688_consen 92 VSLDGHVMLGTGDVPHQWTSFLERLP 117 (313)
T ss_pred cCCCCCEEecCCCcHHHHHHHHHhCC
Confidence 578899887 67886 878877654
Done!