Query 029966
Match_columns 184
No_of_seqs 207 out of 569
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:00:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 96.8 0.0024 8.1E-08 47.0 5.9 57 88-156 6-62 (89)
2 1wmh_B Partitioning defective- 96.5 0.005 1.7E-07 45.3 6.0 69 89-168 7-76 (86)
3 2kkc_A Sequestosome-1; P62, PB 95.1 0.039 1.3E-06 41.4 5.7 61 88-158 5-80 (102)
4 1q1o_A Cell division control p 94.7 0.11 3.8E-06 38.8 7.1 75 88-168 5-86 (98)
5 2ktr_A Sequestosome-1; autopha 94.4 0.068 2.3E-06 41.2 5.5 62 87-158 19-95 (117)
6 1pqs_A Cell division control p 90.6 0.25 8.5E-06 35.2 3.8 57 106-168 8-65 (77)
7 1oey_J P40-PHOX, neutrophil cy 89.9 0.45 1.5E-05 36.2 4.8 40 105-157 28-67 (107)
8 2bkf_A Zinc-finger protein NBR 88.6 1 3.4E-05 33.1 5.8 54 90-156 8-61 (87)
9 1wj6_A KIAA0049 protein, RSGI 87.9 1.1 3.6E-05 33.8 5.7 64 89-167 15-78 (101)
10 1oey_A P67-PHOX, neutrophil cy 84.0 3.8 0.00013 29.5 6.8 70 89-172 6-78 (83)
11 1e8p_A Endoglucanase, dockerin 64.3 1.9 6.4E-05 28.3 0.6 14 141-154 19-32 (46)
12 3o27_A Putative uncharacterize 55.4 5.9 0.0002 27.8 1.9 18 138-155 42-59 (68)
13 2npt_A Dual specificity mitoge 44.0 40 0.0014 25.3 5.0 55 89-156 15-71 (106)
14 2j4m_A Endoglucanase 45A; dock 39.7 7.2 0.00025 29.2 0.4 13 142-154 21-33 (100)
15 2yim_A Probable alpha-methylac 36.9 12 0.00042 32.7 1.5 26 143-168 225-253 (360)
16 3brc_A Conserved protein of un 32.5 12 0.00041 30.0 0.6 16 12-27 95-110 (156)
17 2i1s_A Hypothetical protein; m 25.9 58 0.002 25.6 3.6 38 89-126 9-48 (188)
18 4ed9_A CAIB/BAIF family protei 24.1 25 0.00086 31.0 1.2 26 141-168 243-271 (385)
19 1vk2_A Uracil-DNA glycosylase 23.2 89 0.003 24.9 4.2 49 108-160 13-61 (204)
20 3bux_B E3 ubiquitin-protein li 20.9 1.1E+02 0.0037 27.2 4.6 46 109-155 249-295 (329)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.80 E-value=0.0024 Score=47.02 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=44.9
Q ss_pred cceeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec
Q 029966 88 GIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG 156 (184)
Q Consensus 88 ~~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG 156 (184)
..=||++-.|. .|-+.+..--+|++|...|.++|.+.. +..+++.|.|.|||+.-+-
T Consensus 6 ~vkvK~~~~gd--i~~~~v~~~i~~~~L~~kv~~~~~~~~----------~~~f~lky~DEeGD~itis 62 (89)
T 1vd2_A 6 QVRVKAYYRGD--IMITHFEPSISFEGLCNEVRDMCSFDN----------EQLFTMKWIDEEGDPCTVS 62 (89)
T ss_dssp CEEEEEESSSC--EEEEEECTTCCHHHHHHHHHHHTTCCS----------SCCEEEEECCSSSCCEECC
T ss_pred eEEEEEEeCCe--EEEEECCCCCCHHHHHHHHHHHhCCCC----------CCeEEEEEECCCCCccccc
Confidence 35788899998 445555556799999999999999752 2468999999999987653
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.54 E-value=0.005 Score=45.25 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=52.2
Q ss_pred ceeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecC-cchhhHhhcc
Q 029966 89 IYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGD-VPWEMFMSSC 167 (184)
Q Consensus 89 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~sv 167 (184)
.-||...|..--=-.+|-....+|++|+.-|+++|.+. ...|++.|.|.|||++-+-+ .-..+=+.++
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-----------~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a 75 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-----------GLDVLLGYTDAHGDLLPLTNDDSLHRALASG 75 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-----------TCCCEEEEECTTSCEEECCSHHHHHHHTTSS
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-----------CCCEEEEEECCCCCEeeecCHHHHHHHHHhC
Confidence 56788888873333455567789999999999999964 23599999999999997754 3555666677
Q ss_pred c
Q 029966 168 K 168 (184)
Q Consensus 168 k 168 (184)
|
T Consensus 76 ~ 76 (86)
T 1wmh_B 76 P 76 (86)
T ss_dssp S
T ss_pred C
Confidence 6
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.14 E-value=0.039 Score=41.40 Aligned_cols=61 Identities=16% Similarity=0.294 Sum_probs=44.1
Q ss_pred cceeEEEEcCc----cccceeecCC-----------CCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCe
Q 029966 88 GIYVKVSMDGA----PYLRKIDLKL-----------YNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDW 152 (184)
Q Consensus 88 ~~~VKV~MdG~----pigRKVDL~~-----------~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDw 152 (184)
+.-||++..|. .=-|++=|.. -.+|++|...+.++|..- .+..|.+.|.|.|||+
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l----------~~~~f~l~Y~DedGDl 74 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL----------RPGGFQAHYRAERGDL 74 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS----------CSSCEEEEEECTTCCE
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc----------CCCcEEEEEECCCCCE
Confidence 35678888652 2345555532 248999999999999843 1236999999999999
Q ss_pred EEecCc
Q 029966 153 MLVGDV 158 (184)
Q Consensus 153 MLVGDv 158 (184)
.-+-+.
T Consensus 75 ItiSsD 80 (102)
T 2kkc_A 75 VAFSSD 80 (102)
T ss_dssp EEECSH
T ss_pred EEecCH
Confidence 877654
No 4
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=94.67 E-value=0.11 Score=38.84 Aligned_cols=75 Identities=16% Similarity=0.314 Sum_probs=54.9
Q ss_pred cceeEEEEcCc------cccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecCc-ch
Q 029966 88 GIYVKVSMDGA------PYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDV-PW 160 (184)
Q Consensus 88 ~~~VKV~MdG~------pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv-PW 160 (184)
+.-|||+-+.. .=.|.|=+..-=+|++|...+.+-|+...+. .. .....+-|+|.|||+...++. =|
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~-----~i-~~~~klkYkDEdGD~Vtl~sddDl 78 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNN-----NI-SPITKIKYQDEDGDFVVLGSDEDW 78 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSS-----CC-CCCCCEEEECSSSCEEEECSHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccc-----cc-cceeEEEEEcCCCCEEEEcCHHHH
Confidence 35688887742 1236666778889999999999999964121 00 235799999999999877765 89
Q ss_pred hhHhhccc
Q 029966 161 EMFMSSCK 168 (184)
Q Consensus 161 ~mFv~svk 168 (184)
+|-+++++
T Consensus 79 ~~A~e~~~ 86 (98)
T 1q1o_A 79 NVAKEMLA 86 (98)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888763
No 5
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=94.42 E-value=0.068 Score=41.16 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=44.6
Q ss_pred CcceeEEEEcC----ccccceeecC-----------CCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCC
Q 029966 87 AGIYVKVSMDG----APYLRKIDLK-----------LYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGD 151 (184)
Q Consensus 87 ~~~~VKV~MdG----~pigRKVDL~-----------~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGD 151 (184)
...-||+...| ..=-|++=|. .-.+|++|...+.++|..- .+..|.+.|.|.|||
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L----------~~~~f~l~YkDEdGD 88 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL----------RPGGFQAHYRAERGD 88 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS----------CSSCEEEEEECTTCC
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc----------CCCcEEEEEECCCCC
Confidence 45788999874 1224555554 1359999999999999733 123699999999999
Q ss_pred eEEecCc
Q 029966 152 WMLVGDV 158 (184)
Q Consensus 152 wMLVGDv 158 (184)
+.-+-..
T Consensus 89 lItISsD 95 (117)
T 2ktr_A 89 LVAFSSD 95 (117)
T ss_dssp EEEECSH
T ss_pred EEEecCH
Confidence 8876543
No 6
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=90.62 E-value=0.25 Score=35.21 Aligned_cols=57 Identities=18% Similarity=0.366 Sum_probs=42.0
Q ss_pred cCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecC-cchhhHhhccc
Q 029966 106 LKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGD-VPWEMFMSSCK 168 (184)
Q Consensus 106 L~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~svk 168 (184)
...--+|++|...+.+-|+.... ++ ......+-|+|.|||+...++ .=|+|-+.++|
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~~~-----~~-~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~ 65 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNTHN-----NN-ISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTTTS-----SC-SCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHccccc-----cc-ccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 34455799999999999985310 10 124689999999999987665 58999888764
No 7
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=89.92 E-value=0.45 Score=36.20 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=33.7
Q ss_pred ecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecC
Q 029966 105 DLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGD 157 (184)
Q Consensus 105 DL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD 157 (184)
||+..-.|.+|+.-..+-|... +-+|-|.|.|||+.-+=|
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~-------------DIaLNYrD~eGDLIrild 67 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE-------------DIALNYRDAEGDLVRLLS 67 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS-------------SEEEEEECTTSCEEECCS
T ss_pred ccccCCCHHHHHHHHHHHhccc-------------ceeeeeecCCCCEEEEcc
Confidence 6788889999999999999843 358999999999986544
No 8
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=88.65 E-value=1 Score=33.08 Aligned_cols=54 Identities=7% Similarity=0.124 Sum_probs=40.8
Q ss_pred eeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEec
Q 029966 90 YVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG 156 (184)
Q Consensus 90 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG 156 (184)
=+||.-.|...---|.-..--++++|...+..+|+++ .++++|-|.|||-.-|=
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~-------------~~~ikY~DEenD~v~i~ 61 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSIN 61 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS-------------SEEEEEECTTSCEEEEC
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC-------------ceEEEEEcCCCCEEEEe
Confidence 4688888883322353333678999999999999875 37999999999987663
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=87.95 E-value=1.1 Score=33.82 Aligned_cols=64 Identities=6% Similarity=0.097 Sum_probs=47.0
Q ss_pred ceeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecCcchhhHhhcc
Q 029966 89 IYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMSSC 167 (184)
Q Consensus 89 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDvPW~mFv~sv 167 (184)
.-+||.-.|...---|.-..--.+++|...+..+|+++ .++|.|-|.|||-.-| .-+.+|-+.+
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~-------------~~~IkY~DEenD~V~i--~Sq~E~eEAl 78 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSI--NSQGEYEEAL 78 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS-------------SBCCEEECTTSCEECC--CSHHHHHHHH
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC-------------ceEEEEecCCCCEEEE--ecHHHHHHHH
Confidence 45799999984333354444678999999999999875 3699999999999877 3466554433
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=84.03 E-value=3.8 Score=29.49 Aligned_cols=70 Identities=10% Similarity=0.116 Sum_probs=54.2
Q ss_pred ceeEEEEcCccccceeecCCCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEec-CCCCeEEecCcchhhHhhcc
Q 029966 89 IYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYED-KDGDWMLVGDVPWEMFMSSC 167 (184)
Q Consensus 89 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeD-kdGDwMLVGDvPW~mFv~sv 167 (184)
.=|||+-. +.--|....=-+|.+|...|.+-+... ++ +-++-|.| .+|.|++.+|.-++.-...+
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~-~~----------~~~LsYk~~~s~~~vi~~d~dl~~aw~~~ 71 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELR-LE----------HTKLSYRPRDSNELVPLSEDSMKDAWGQV 71 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCC-GG----------GCCEEECCTTCSSCEECCTTTHHHHHTTC
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCC-cc----------eeEEEeeCCCCCCeeccChHHHHHHHHhc
Confidence 34677666 677888888889999999999999874 21 24889999 58888999999998877764
Q ss_pred c--eeEE
Q 029966 168 K--RLRI 172 (184)
Q Consensus 168 k--RLrI 172 (184)
+ ||++
T Consensus 72 ~n~~LtL 78 (83)
T 1oey_A 72 KNYCLTL 78 (83)
T ss_dssp BTTEEEE
T ss_pred cCCcEEE
Confidence 4 4554
No 11
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=64.29 E-value=1.9 Score=28.30 Aligned_cols=14 Identities=29% Similarity=0.712 Sum_probs=11.8
Q ss_pred ceeEEecCCCCeEE
Q 029966 141 YEPTYEDKDGDWML 154 (184)
Q Consensus 141 ~~ltYeDkdGDwML 154 (184)
-.++|+|.||||=.
T Consensus 19 c~V~YtD~dG~WGV 32 (46)
T 1e8p_A 19 TKVEYTDASGQWGV 32 (46)
T ss_dssp SCEEEEETTEEEEE
T ss_pred ceEEEEcCCCcccc
Confidence 36999999999954
No 12
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=55.41 E-value=5.9 Score=27.82 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.6
Q ss_pred CCcceeEEecCCCCeEEe
Q 029966 138 GSEYEPTYEDKDGDWMLV 155 (184)
Q Consensus 138 ~s~~~ltYeDkdGDwMLV 155 (184)
+-++.++++|++|+.+|+
T Consensus 42 gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 42 DDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TCCEEEEEEEETTEEEEE
T ss_pred CCEEEEEEecCCCeEEEE
Confidence 347999999999999886
No 13
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=44.03 E-value=40 Score=25.27 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=38.9
Q ss_pred ceeEEEEc-CccccceeecCCCCChHHHHHHHHhhhcc-cccccccccCCCCCcceeEEecCCCCeEEec
Q 029966 89 IYVKVSMD-GAPYLRKIDLKLYNGYPELLKALENMFKF-TVGVYSEREGYKGSEYEPTYEDKDGDWMLVG 156 (184)
Q Consensus 89 ~~VKV~Md-G~pigRKVDL~~~~sY~eL~~~L~~MF~~-~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG 156 (184)
.-+.+... |..+--.||-...=++.+|+.++.+...- + --..-|||.|||.+-|-
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT-------------~TAFeYEDE~gDRITVR 71 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEAT-------------TTAFEYEDEDGDRITVR 71 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSC-------------CSEEEEECTTSCEEEEC
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccce-------------eeeeeeccccCCeeEEc
Confidence 44555555 55577778877777899999998887653 2 12678999999998874
No 14
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=39.73 E-value=7.2 Score=29.25 Aligned_cols=13 Identities=31% Similarity=0.815 Sum_probs=11.5
Q ss_pred eeEEecCCCCeEE
Q 029966 142 EPTYEDKDGDWML 154 (184)
Q Consensus 142 ~ltYeDkdGDwML 154 (184)
.++|.|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 7999999999954
No 15
>2yim_A Probable alpha-methylacyl-COA racemase MCR (2-methylacyl-COA racemase) (2-arylpropionyl-COA...; isomerase, methyl-COA racemase; HET: MC4; 1.41A {Mycobacterium tuberculosis} PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A* 2gci_A*
Probab=36.93 E-value=12 Score=32.75 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=19.9
Q ss_pred eEEecCCCCeEEec---CcchhhHhhccc
Q 029966 143 PTYEDKDGDWMLVG---DVPWEMFMSSCK 168 (184)
Q Consensus 143 ltYeDkdGDwMLVG---DvPW~mFv~svk 168 (184)
=+|+=+||-|+.|+ |--|+.||...-
T Consensus 225 ~~y~t~DG~~i~i~~~~~~~w~~l~~~lg 253 (360)
T 2yim_A 225 DTYECADGRYVAVGAIEPQFYAAMLAGLG 253 (360)
T ss_dssp EEEECTTSCEEEEECCSHHHHHHHHHHHT
T ss_pred CeEECCCCCEEEEEeCCHHHHHHHHHHhC
Confidence 47999999888886 445888887553
No 16
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=32.53 E-value=12 Score=29.97 Aligned_cols=16 Identities=44% Similarity=0.711 Sum_probs=11.4
Q ss_pred CccccccccCCCCCCC
Q 029966 12 NLKATELRLGLPGSDE 27 (184)
Q Consensus 12 ~l~~TELrLGLPG~~~ 27 (184)
+|=..-=|||.||+++
T Consensus 95 DlvIARGRLGvPGSGS 110 (156)
T 3brc_A 95 DLVIARGRLGVPGSGS 110 (156)
T ss_dssp SEEEEEEECSSTTSCE
T ss_pred cEEEEcccccCCCCcc
Confidence 4444455999999874
No 17
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=25.86 E-value=58 Score=25.57 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=34.7
Q ss_pred ceeEEEEcCc--cccceeecCCCCChHHHHHHHHhhhccc
Q 029966 89 IYVKVSMDGA--PYLRKIDLKLYNGYPELLKALENMFKFT 126 (184)
Q Consensus 89 ~~VKV~MdG~--pigRKVDL~~~~sY~eL~~~L~~MF~~~ 126 (184)
.-+||..+|. +|=|.|.+..--+..+|-.+|+..|+.+
T Consensus 9 y~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afgw~ 48 (188)
T 2i1s_A 9 YHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDWE 48 (188)
T ss_dssp EEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTTCC
T ss_pred EEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 4679999986 7999999999999999999999999964
No 18
>4ed9_A CAIB/BAIF family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: NHE; 1.95A {Brucella suis}
Probab=24.05 E-value=25 Score=31.04 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=19.0
Q ss_pred ceeEEecCCCCeEEecCc---chhhHhhccc
Q 029966 141 YEPTYEDKDGDWMLVGDV---PWEMFMSSCK 168 (184)
Q Consensus 141 ~~ltYeDkdGDwMLVGDv---PW~mFv~svk 168 (184)
|. +|+=+|| |+.|+-. -|+.||...-
T Consensus 243 y~-~y~t~DG-~i~v~~~~~~~w~~l~~~lg 271 (385)
T 4ed9_A 243 YQ-TLSVSDG-YFIIACGNDGQFGKLSTLLG 271 (385)
T ss_dssp EE-EEEETTE-EEEEECCSHHHHHHHHHHTT
T ss_pred cc-ceecCCC-cEEEEeCCHHHHHHHHHHcC
Confidence 44 7999999 7777643 5888887554
No 19
>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, P protein structure initiative, joint center for structural G hydrolase; 1.90A {Thermotoga maritima} SCOP: c.18.1.2 PDB: 1l9g_A
Probab=23.19 E-value=89 Score=24.90 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=30.0
Q ss_pred CCCChHHHHHHHHhhhcccccccccccCCCCCcceeEEecCCCCeEEecCcch
Q 029966 108 LYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPW 160 (184)
Q Consensus 108 ~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDvPW 160 (184)
||....+|-.-.+.+=.|....+.. .....++-|-+.+-++|+||.-|=
T Consensus 13 ~~~~~~~l~~L~~~i~~C~~C~l~~----~~~~~V~g~G~~~a~lm~VGeaPG 61 (204)
T 1vk2_A 13 MYTREELMEIVSERVKKCTACPLHL----NRTNVVVGEGNLDTRIVFVGEGPG 61 (204)
T ss_dssp CCCHHHHHHHHHHHHHHCCSSGGGG----TCSSCCCCEECTTCSEEEEESCCC
T ss_pred hhccccCHHHHHHHHHhCcCCcccc----cCCCCccCCCCCCCCEEEEECCCC
Confidence 4555555444333444454222221 345678888899999999999983
No 20
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=20.94 E-value=1.1e+02 Score=27.18 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=28.5
Q ss_pred CCChHHHHHHHHhhhccccccccccc-CCCCCcceeEEecCCCCeEEe
Q 029966 109 YNGYPELLKALENMFKFTVGVYSERE-GYKGSEYEPTYEDKDGDWMLV 155 (184)
Q Consensus 109 ~~sY~eL~~~L~~MF~~~~g~~~~~~-~~~~s~~~ltYeDkdGDwMLV 155 (184)
|-+|.|....|++--.-. |.+--|- .-.-..|.|.|.++||+.+..
T Consensus 249 FlTydEv~~~L~~~~~kp-GsYIfR~ScTrlGqwAIgyV~~~~~I~qt 295 (329)
T 3bux_B 249 FLTYDEVKARLQKFIHKP-GSYIFRLSCTRLGQWAIGYVTADGNILQT 295 (329)
T ss_dssp TCCHHHHHHHHGGGTTST-TEEEEEECSSSTTSEEEEEECTTSCEEEE
T ss_pred eeeHHHHHHHHHHhcCCC-CcEEEEeccCccCceEEEEECCCCceeee
Confidence 778999999998722211 2210000 001237999999999998864
Done!