BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029967
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2
PE=2 SV=1
Length = 184
Score = 241 bits (614), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/191 (66%), Positives = 146/191 (76%), Gaps = 14/191 (7%)
Query: 1 MSLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQ---AV 57
MS+D +SERVCYVHC++C TILAVSVP +SLF +VTVRCGHC NLL++N+ +L A
Sbjct: 1 MSVDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAP 60
Query: 58 PL-QD--PQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPS 114
P+ QD P +QH KDC SSS+ S E + E PRMPPIRPPEKRQRVPS
Sbjct: 61 PIHQDLQPHRQHTT-SLVTRKDCASSSRSTNNLS--ENIDREAPRMPPIRPPEKRQRVPS 117
Query: 115 AYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAK-LDKAAAY 173
AYNRFIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHFGLKLDGNK+ K LD++ A
Sbjct: 118 AYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQSVA- 176
Query: 174 AEGTQKSNGFY 184
QKSNG+Y
Sbjct: 177 ---GQKSNGYY 184
>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
Length = 164
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 106/164 (64%), Positives = 125/164 (76%), Gaps = 7/164 (4%)
Query: 5 LASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQK 64
+A+E++CY+ CN+CN ILAV+VPCSSLF+IVTVRCGHC NL +VNM +ALQ+ L P
Sbjct: 6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQS--LSRPNF 63
Query: 65 QHINLEDSITKDCGSSSKCN-KFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEE 123
Q N + GSSS+ + K S T R+ RPPEKRQRVPSAYN+FIKEE
Sbjct: 64 QATNYA---VPEYGSSSRSHTKIPSRISTRTITEQRIVN-RPPEKRQRVPSAYNQFIKEE 119
Query: 124 IQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKL 167
IQRIKA+NPDISHREAFSTAAKNWAHFPHIHFGL L+ NKQAK+
Sbjct: 120 IQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1
Length = 186
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/183 (58%), Positives = 127/183 (69%), Gaps = 8/183 (4%)
Query: 6 ASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP----LQD 61
A E VCYVHCN+CNTI AVSVP +S+ NIVTVRCGHC +LL+VN+ +QA+P LQD
Sbjct: 8 APEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQD 67
Query: 62 PQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIK 121
K H + GSSS+ + F ++++T M +RPPEKRQRVPSAYNRFIK
Sbjct: 68 NLKMHNMSFRENYSEYGSSSRYGRVPMMF--SKNDTEHMLHVRPPEKRQRVPSAYNRFIK 125
Query: 122 EEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDKAAAYAEGTQKSN 181
EEI+RIKA+NPDISHREAFSTAAKNWAHFP+IHFGL KLD+A A QK
Sbjct: 126 EEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLG-SHESSKKLDEAIG-APSPQKVQ 183
Query: 182 GFY 184
Y
Sbjct: 184 RLY 186
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1
Length = 207
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 128/208 (61%), Gaps = 26/208 (12%)
Query: 1 MSLDLA-SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP- 58
MS +A +E+VCYVHCN+CNTILAVSVP +S+ NIVTVRCGHC NLL+VN+ + + P
Sbjct: 1 MSAQIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPA 60
Query: 59 LQDPQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPI--------------- 103
LQD H +L++S C + R+PP
Sbjct: 61 LQD--HHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLE 118
Query: 104 -----RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLK 158
RPPEKRQRVPSAYNRFIKEEI+RIKA+NPDISHREAFSTAAKNWAH+P+IHFGL
Sbjct: 119 QALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLS 178
Query: 159 L--DGNKQAKLDKAAAYAEGTQKSNGFY 184
+G K+ A ++K GFY
Sbjct: 179 PGHEGGKKLVDVDPIPTAPSSKKIQGFY 206
>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1
Length = 169
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/159 (55%), Positives = 112/159 (70%)
Query: 1 MSLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQ 60
MS+ SE VCYV+CNYCNTIL V+VP + +NIVTVRCGHC +L++++ QA +Q
Sbjct: 1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQ 60
Query: 61 DPQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFI 120
D Q Q+ + + +S+ + S+A ++ PIRPPEKRQRVPSAYNRFI
Sbjct: 61 DHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFI 120
Query: 121 KEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKL 159
KEEIQRIK SNP+ISHREAFS AAKNWAH P +HFGL +
Sbjct: 121 KEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSV 159
>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
Length = 229
Score = 179 bits (454), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 103/196 (52%), Positives = 120/196 (61%), Gaps = 18/196 (9%)
Query: 7 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVS----ALQAVPLQDP 62
S+ +CYV CN+C TILAV+VP +SLF VTVRCG C NLL+VNM S A + LQ
Sbjct: 22 SDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQLG 81
Query: 63 QKQHINLEDSI--TKDCGSSS---------KCNKFSSAFET-AEHETPRMPPI-RPPEKR 109
+ N +D + +D S+ N S + +HE P+ PP+ RPPEKR
Sbjct: 82 PHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPEKR 141
Query: 110 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDK 169
QRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL D K +
Sbjct: 142 QRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDNQPVKKTNM 201
Query: 170 AAAYAEGTQ-KSNGFY 184
E GFY
Sbjct: 202 PQQEGEDNMVMKEGFY 217
>sp|Q0JBF0|YAB5_ORYSJ Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1
Length = 266
Score = 177 bits (448), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 121/218 (55%), Gaps = 41/218 (18%)
Query: 8 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM--------VSALQAVP- 58
E++CYVHCN+C+TILAV VPCSSLF VTVRCGHCANLL+VN+ S +P
Sbjct: 29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPF 88
Query: 59 ---LQDPQKQHINLED-----------------------SITKDCGSSSKCNKFSSAFET 92
L P H L++ S C +++ +SA
Sbjct: 89 GQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANK 148
Query: 93 AEHETPRMPPIRPP-----EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNW 147
A P+ P P EKRQRVPSAYNRFIK+EIQRIKASNPDI+HREAFS AAKNW
Sbjct: 149 ATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNW 208
Query: 148 AHFPHIHFGLKLD-GNKQAKLDKAAAYAEGTQKSNGFY 184
AHFPHIHFGL D G K+ + E +G Y
Sbjct: 209 AHFPHIHFGLMPDQGLKKTGIQSQDGAGECMLFKDGLY 246
>sp|Q01JG2|YAB5_ORYSI Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2
Length = 266
Score = 177 bits (448), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 121/218 (55%), Gaps = 41/218 (18%)
Query: 8 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM--------VSALQAVP- 58
E++CYVHCN+C+TILAV VPCSSLF VTVRCGHCANLL+VN+ S +P
Sbjct: 29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPF 88
Query: 59 ---LQDPQKQHINLED-----------------------SITKDCGSSSKCNKFSSAFET 92
L P H L++ S C +++ +SA
Sbjct: 89 GQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANK 148
Query: 93 AEHETPRMPPIRPP-----EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNW 147
A P+ P P EKRQRVPSAYNRFIK+EIQRIKASNPDI+HREAFS AAKNW
Sbjct: 149 ATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNW 208
Query: 148 AHFPHIHFGLKLD-GNKQAKLDKAAAYAEGTQKSNGFY 184
AHFPHIHFGL D G K+ + E +G Y
Sbjct: 209 AHFPHIHFGLMPDQGLKKTGIQSQDGAGECMLFKDGLY 246
>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1
Length = 256
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/194 (51%), Positives = 116/194 (59%), Gaps = 40/194 (20%)
Query: 7 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM------------VSAL 54
+E++CYVHCN C+TILAV VPCSSLF VTVRCGHCANLL+VN+ + L
Sbjct: 22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQL 81
Query: 55 QAVP-LQDPQKQHINLEDS-------ITKDCGSSS----------KCNKFSSAFETA--- 93
P L P H L++ + + S+S C + A +
Sbjct: 82 HFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAK 141
Query: 94 ----EHETPRMPPI---RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKN 146
E E P+ P RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKN
Sbjct: 142 PVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 201
Query: 147 WAHFPHIHFGLKLD 160
WAHFPHIHFGL D
Sbjct: 202 WAHFPHIHFGLMPD 215
>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1
Length = 256
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/194 (51%), Positives = 116/194 (59%), Gaps = 40/194 (20%)
Query: 7 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM------------VSAL 54
+E++CYVHCN C+TILAV VPCSSLF VTVRCGHCANLL+VN+ + L
Sbjct: 22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQL 81
Query: 55 QAVP-LQDPQKQHINLEDS-------ITKDCGSSS----------KCNKFSSAFETA--- 93
P L P H L++ + + S+S C + A +
Sbjct: 82 HFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAK 141
Query: 94 ----EHETPRMPPI---RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKN 146
E E P+ P RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKN
Sbjct: 142 PVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 201
Query: 147 WAHFPHIHFGLKLD 160
WAHFPHIHFGL D
Sbjct: 202 WAHFPHIHFGLMPD 215
>sp|Q9XFB1|YAB3_ARATH Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1
Length = 240
Score = 159 bits (402), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 121/211 (57%), Gaps = 34/211 (16%)
Query: 6 ASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP------- 58
+++++CYVHC++C+T+LAVSVP SSLF VTVRCGHC+NLL+V + +P
Sbjct: 21 STDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGH 80
Query: 59 ---LQDPQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRM--------------- 100
P NL + + + G + N S +A H +
Sbjct: 81 SFLPPPPPPPPPNLLEEM-RSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQE 139
Query: 101 -----PPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHF 155
P RPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHF
Sbjct: 140 MPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHF 199
Query: 156 GLKLDG--NKQAKLDKAAAYAEGTQKSNGFY 184
GL D K+A + + +G GFY
Sbjct: 200 GLMADHPPTKKANVRQQEG-EDGMMGREGFY 229
>sp|Q76EJ0|YABDL_ORYSJ Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1
SV=1
Length = 194
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 90/153 (58%), Gaps = 14/153 (9%)
Query: 1 MSLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQ 60
M L SE +CYV C YCNT+LAV VPC L + VTV+CGHC NL S L P
Sbjct: 1 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNL------SFLSPRP-- 52
Query: 61 DPQKQHINLED----SITKDCGSSSKCNKFSSAFETAEHETPRMP-PIRPPEKRQRVPSA 115
P Q ++ D C + T+ +PR P ++PPEK+ R+PSA
Sbjct: 53 -PMVQPLSPTDHPLGPFQGPCTDCRRNQPLPLVSPTSNEGSPRAPFVVKPPEKKHRLPSA 111
Query: 116 YNRFIKEEIQRIKASNPDISHREAFSTAAKNWA 148
YNRF++EEIQRIKA+ PDI HREAFS AAKNWA
Sbjct: 112 YNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144
>sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2
Length = 231
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 107/176 (60%), Gaps = 22/176 (12%)
Query: 9 RVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSA--------LQAVPLQ 60
++C+V C +C TIL VSVP +SL +VTVRCGHC +LL+VN++ A L
Sbjct: 20 QICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSHLD 79
Query: 61 DPQKQHINLEDSITKDCG--SSSKCNKFSSAFETAEHETPRMPPI-----RPPEKRQRVP 113
+ K+ + D + ++ + K N ++ ++++E + + +PPEKRQR P
Sbjct: 80 ETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQRAP 139
Query: 114 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDK 169
SAYN FIKEEI+R+KA NP ++H+EAFS AAKNWAHFP H NK+A D+
Sbjct: 140 SAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH-------NKRAASDQ 188
>sp|Q8L925|CRC_ARATH Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2
Length = 181
Score = 123 bits (309), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 93/148 (62%), Gaps = 13/148 (8%)
Query: 7 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQH 66
+E + YV C+ CNTILAV +P + + VTV+CGHC NL S L P P + H
Sbjct: 18 AEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNL------SFLTTTP---PLQGH 68
Query: 67 INLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPP----IRPPEKRQRVPSAYNRFIKE 122
++L + GS K SS+ + + P P ++PPEK+QR+PSAYNRF+++
Sbjct: 69 VSLTLQMQSFGGSDYKKGSSSSSSSSTSSDQPPSPSPPFVVKPPEKKQRLPSAYNRFMRD 128
Query: 123 EIQRIKASNPDISHREAFSTAAKNWAHF 150
EIQRIK++NP+I HREAFS AAKNWA +
Sbjct: 129 EIQRIKSANPEIPHREAFSAAAKNWAKY 156
>sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1
Length = 313
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 61/80 (76%), Gaps = 3/80 (3%)
Query: 104 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNK 163
RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL D
Sbjct: 214 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD--- 270
Query: 164 QAKLDKAAAYAEGTQKSNGF 183
L K + + Q+ +G
Sbjct: 271 HQGLKKTSLLPQDHQRKDGL 290
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 4 DLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSAL 54
D E++CYVHC+YC+T+L VSVP SSLF VTVRCGHC++LL VNM L
Sbjct: 54 DSEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNMRGLL 104
>sp|A2PZN8|YAB7_ORYSJ Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1
Length = 169
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 91/149 (61%), Gaps = 3/149 (2%)
Query: 8 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLN-VNMVSALQAVPLQ-DPQKQ 65
ER+ V C++C T+L VSVPCSS+ +V V+CGHC+ +L+ VN+ + + ++ PQ+
Sbjct: 14 ERLGCVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILSAVNLPPSPVSASIELTPQEL 73
Query: 66 HINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQ 125
D SS + A + A +PP ++QR PSAYN F+KEEI+
Sbjct: 74 DAGPPPGEYSD-ESSGDDREGRDAEDDAPAPAAAAVANKPPGRKQRTPSAYNCFVKEEIK 132
Query: 126 RIKASNPDISHREAFSTAAKNWAHFPHIH 154
RIK+ P+I+H++AFSTAAKNWAH P I
Sbjct: 133 RIKSMEPNITHKQAFSTAAKNWAHLPRIQ 161
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 114 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151
++Y RF KE++ KA NPD + E AK W P
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELP 92
>sp|Q00059|TFAM_HUMAN Transcription factor A, mitochondrial OS=Homo sapiens GN=TFAM PE=1
SV=1
Length = 246
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 114 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151
S+Y RF KE++ KA NPD E A+ W P
Sbjct: 55 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 92
>sp|Q4H0T5|TFAM_TRACR Transcription factor A, mitochondrial OS=Trachypithecus cristatus
GN=TFAM PE=2 SV=1
Length = 246
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 114 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151
S+Y RF KE++ KA NPD E AK W P
Sbjct: 55 SSYLRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELP 92
>sp|Q18079|YXT1_CAEEL Uncharacterized protein C18B2.1 OS=Caenorhabditis elegans
GN=C18B2.1 PE=4 SV=1
Length = 321
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 96 ETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKAS 130
ET MP + KRQ+VPS RFIK E+ K+S
Sbjct: 270 ETTMMPQLEEMLKRQKVPSDSIRFIKNELLYKKSS 304
>sp|Q5D144|TFAM_PIG Transcription factor A, mitochondrial OS=Sus scrofa GN=TFAM PE=2
SV=1
Length = 246
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 114 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151
++Y RF KE++ KA NPD + E A+ W P
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAELWRELP 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,488,807
Number of Sequences: 539616
Number of extensions: 2531862
Number of successful extensions: 8171
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 8119
Number of HSP's gapped (non-prelim): 63
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)