Query 029967
Match_columns 184
No_of_seqs 125 out of 185
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 10:02:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hme_A High mobility group pro 97.9 1.7E-05 5.8E-10 54.4 5.6 47 105-151 3-49 (77)
2 1wz6_A HMG-box transcription f 97.8 2.4E-05 8.1E-10 54.6 5.3 48 104-151 3-50 (82)
3 3nm9_A HMG-D, high mobility gr 97.8 4.1E-05 1.4E-09 52.4 5.5 44 109-152 4-47 (73)
4 2crj_A SWI/SNF-related matrix- 97.7 5.9E-05 2E-09 53.9 6.2 48 104-151 3-50 (92)
5 2cs1_A PMS1 protein homolog 1; 97.7 5.1E-05 1.8E-09 54.2 5.8 48 105-152 4-51 (92)
6 1hry_A Human SRY; DNA, DNA-bin 97.7 3.2E-05 1.1E-09 52.9 4.5 46 106-151 2-47 (76)
7 2e6o_A HMG box-containing prot 97.7 4E-05 1.4E-09 54.3 4.9 48 104-151 13-60 (87)
8 1wgf_A Upstream binding factor 97.7 4.6E-05 1.6E-09 54.4 5.1 48 104-151 16-63 (90)
9 1wxl_A Single-strand recogniti 97.7 6.6E-05 2.3E-09 51.3 5.5 45 106-150 1-45 (73)
10 1j46_A SRY, sex-determining re 97.7 6.6E-05 2.2E-09 52.8 5.6 46 106-151 2-47 (85)
11 2co9_A Thymus high mobility gr 97.7 6.5E-05 2.2E-09 54.9 5.7 48 104-151 13-60 (102)
12 1k99_A Upstream binding factor 97.6 7.4E-05 2.5E-09 54.5 5.2 48 104-151 6-53 (99)
13 4euw_A Transcription factor SO 97.6 0.0001 3.4E-09 54.4 5.8 49 103-151 24-72 (106)
14 2eqz_A High mobility group pro 97.6 9.9E-05 3.4E-09 52.0 5.3 48 104-151 11-60 (86)
15 1i11_A Transcription factor SO 97.6 0.00013 4.4E-09 50.7 5.8 44 108-151 4-47 (81)
16 3f27_D Transcription factor SO 97.6 9.2E-05 3.2E-09 51.4 4.9 45 107-151 5-49 (83)
17 4a3n_A Transcription factor SO 97.5 0.00011 3.9E-09 49.2 4.7 43 109-151 3-45 (71)
18 1ckt_A High mobility group 1 p 97.5 0.00015 5.2E-09 48.8 5.2 43 109-151 2-46 (71)
19 1gt0_D Transcription factor SO 97.5 0.00017 5.9E-09 49.8 5.4 43 109-151 3-45 (80)
20 2gzk_A Sex-determining region 97.4 0.00023 8E-09 54.6 5.8 48 104-151 84-131 (159)
21 3u2b_C Transcription factor SO 97.4 0.00019 6.4E-09 49.2 4.6 42 110-151 4-45 (79)
22 1aab_A High mobility group pro 97.4 0.00014 4.8E-09 50.7 3.8 47 105-151 4-52 (83)
23 2yrq_A High mobility group pro 97.4 0.00027 9.2E-09 55.2 5.6 48 104-151 97-144 (173)
24 2lhj_A High mobility group pro 97.3 9.5E-05 3.2E-09 53.3 2.8 50 103-152 17-68 (97)
25 1cg7_A Protein (NON histone pr 97.3 6E-05 2.1E-09 54.1 1.1 48 104-151 16-63 (93)
26 2lef_A LEF-1 HMG, protein (lym 97.3 0.00043 1.5E-08 48.6 5.4 42 110-151 4-45 (86)
27 2d7l_A WD repeat and HMG-box D 97.2 0.00064 2.2E-08 48.4 6.0 44 108-151 5-49 (81)
28 2yrq_A High mobility group pro 97.1 0.00064 2.2E-08 53.1 5.7 49 104-152 11-61 (173)
29 3tq6_A Transcription factor A, 96.8 0.00087 3E-08 54.8 4.2 47 106-152 7-53 (214)
30 3tmm_A Transcription factor A, 96.8 0.00099 3.4E-08 55.3 4.1 48 104-151 37-84 (238)
31 2gzk_A Sex-determining region 96.6 0.0027 9.1E-08 48.7 5.3 46 106-151 2-47 (159)
32 1l8y_A Upstream binding factor 96.3 0.0055 1.9E-07 45.4 5.1 41 109-150 5-45 (91)
33 3fgh_A Transcription factor A, 96.2 0.0035 1.2E-07 41.9 3.4 38 110-151 4-41 (67)
34 1v63_A Nucleolar transcription 95.2 0.026 8.9E-07 41.2 4.9 40 111-152 11-50 (101)
35 1v64_A Nucleolar transcription 95.2 0.022 7.7E-07 42.1 4.4 39 110-152 19-57 (108)
36 3tmm_A Transcription factor A, 94.3 0.011 3.8E-07 49.0 0.9 42 106-151 144-185 (238)
37 3tq6_A Transcription factor A, 94.1 0.012 4.2E-07 48.0 0.9 42 106-151 112-153 (214)
38 2yuk_A Myeloid/lymphoid or mix 93.4 0.0088 3E-07 44.0 -1.0 43 107-151 21-63 (90)
39 2cto_A Novel protein; high mob 90.3 0.14 4.6E-06 37.6 2.2 39 110-150 12-53 (93)
40 1x0t_A Ribonuclease P protein 64.1 2.4 8.2E-05 32.0 1.3 33 14-46 67-104 (120)
41 2k3r_A Ribonuclease P protein 61.5 2.5 8.7E-05 32.2 1.0 33 14-46 62-99 (123)
42 1wii_A Hypothetical UPF0222 pr 59.2 4.9 0.00017 29.2 2.2 43 12-54 23-65 (85)
43 2fiy_A Protein FDHE homolog; F 55.2 3.6 0.00012 35.8 1.0 29 8-46 204-232 (309)
44 2d74_B Translation initiation 34.9 14 0.00049 29.2 1.4 36 11-52 103-141 (148)
45 3uky_C Nuclear CAP-binding pro 28.4 15 0.00053 22.6 0.5 7 107-113 26-32 (32)
46 2e2z_A TIM15; protein import, 27.4 23 0.00078 26.8 1.3 32 14-45 15-47 (100)
47 2g2k_A EIF-5, eukaryotic trans 26.6 33 0.0011 27.8 2.3 38 11-52 95-135 (170)
48 3sja_C Golgi to ER traffic pro 24.4 37 0.0013 23.8 1.9 30 118-147 9-38 (65)
49 3he5_B Synzip2; heterodimeric 24.3 31 0.001 23.1 1.4 21 114-134 2-22 (52)
50 2e9h_A EIF-5, eukaryotic trans 23.8 32 0.0011 27.5 1.7 38 11-52 102-142 (157)
51 3j20_W 30S ribosomal protein S 22.4 32 0.0011 24.0 1.3 12 13-24 35-46 (63)
52 1t6f_A Geminin; coiled-coil, c 21.9 27 0.00093 22.2 0.7 13 121-133 20-32 (37)
53 3fl2_A E3 ubiquitin-protein li 21.1 32 0.0011 24.5 1.0 20 13-41 53-72 (124)
54 1bb1_B Designed, thermostable 21.1 46 0.0016 20.8 1.6 12 119-130 13-24 (36)
55 2ph0_A Uncharacterized protein 20.7 31 0.0011 27.5 1.0 22 120-141 1-22 (174)
56 2ysl_A Tripartite motif-contai 20.3 35 0.0012 21.6 1.0 22 12-42 20-41 (73)
No 1
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=97.92 E-value=1.7e-05 Score=54.43 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=42.7
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 105 PPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 105 PPEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
-|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 3 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (77)
T 1hme_A 3 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 49 (77)
T ss_dssp CSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 46666788999999999999999999999999999999999999754
No 2
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=97.85 E-value=2.4e-05 Score=54.55 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=43.5
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 104 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 104 kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
.+|.+-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLD 50 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCC
Confidence 356667788999999999999999999999999999999999999754
No 3
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=97.77 E-value=4.1e-05 Score=52.38 Aligned_cols=44 Identities=25% Similarity=0.399 Sum_probs=40.6
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 029967 109 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 152 (184)
Q Consensus 109 RQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P~ 152 (184)
-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+.
T Consensus 4 PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 47 (73)
T 3nm9_A 4 PKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD 47 (73)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc
Confidence 35789999999999999999999999999999999999998653
No 4
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=97.75 E-value=5.9e-05 Score=53.91 Aligned_cols=48 Identities=19% Similarity=0.433 Sum_probs=43.4
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 104 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 104 kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
+-|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQ 50 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 446666788999999999999999999999999999999999999754
No 5
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=5.1e-05 Score=54.23 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=42.5
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 029967 105 PPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 152 (184)
Q Consensus 105 PPEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P~ 152 (184)
.|.+-.|-+|||..|+++.-.+|+++||+++..|.-+.++..|+..+.
T Consensus 4 ~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 51 (92)
T 2cs1_A 4 GSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSE 51 (92)
T ss_dssp CCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCH
Confidence 345556789999999999999999999999999999999999997543
No 6
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=97.74 E-value=3.2e-05 Score=52.93 Aligned_cols=46 Identities=13% Similarity=0.346 Sum_probs=41.4
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 106 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 106 PEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
|.+-.|-+|||..|+++.-+.|++++|+++..|.-+.++..|+..+
T Consensus 2 p~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 47 (76)
T 1hry_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCC
Confidence 4556778999999999999999999999999999999999999754
No 7
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=97.72 E-value=4e-05 Score=54.30 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=43.8
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 104 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 104 kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
+-|.+-.|-++||..|+++.-++|++++|++++.|.-+.++..|+..+
T Consensus 13 kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 60 (87)
T 2e6o_A 13 TSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMK 60 (87)
T ss_dssp CCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCC
Confidence 456777888999999999999999999999999999999999999754
No 8
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.71 E-value=4.6e-05 Score=54.42 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=43.5
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 104 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 104 kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
+.|.+-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 16 kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls 63 (90)
T 1wgf_A 16 GGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLS 63 (90)
T ss_dssp SCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 456666788999999999999999999999999999999999999754
No 9
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=97.69 E-value=6.6e-05 Score=51.34 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=41.1
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccC
Q 029967 106 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHF 150 (184)
Q Consensus 106 PEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~ 150 (184)
|.+-.|-+|||..|+++.-..|+++||+++..|.-+.++..|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL 45 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh
Confidence 345567899999999999999999999999999999999999975
No 10
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=97.69 E-value=6.6e-05 Score=52.85 Aligned_cols=46 Identities=13% Similarity=0.346 Sum_probs=41.6
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 106 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 106 PEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
|.+-.|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..+
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 47 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSC
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Confidence 4455678999999999999999999999999999999999999754
No 11
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.68 E-value=6.5e-05 Score=54.87 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=43.7
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 104 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 104 kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
+.|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 13 kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls 60 (102)
T 2co9_A 13 KDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLG 60 (102)
T ss_dssp CCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCC
Confidence 456666788999999999999999999999999999999999999765
No 12
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=97.62 E-value=7.4e-05 Score=54.50 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=43.3
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 104 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 104 kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
+.|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 6 kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls 53 (99)
T 1k99_A 6 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELP 53 (99)
T ss_dssp SSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 456666788999999999999999999999999999999999999754
No 13
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=97.60 E-value=0.0001 Score=54.42 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=42.4
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 103 IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 103 ~kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
.+.|.+-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 24 ~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls 72 (106)
T 4euw_A 24 SKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLN 72 (106)
T ss_dssp ----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCC
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 3667777889999999999999999999999999999999999998755
No 14
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=9.9e-05 Score=52.03 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=41.5
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 029967 104 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISH--REAFSTAAKNWAHFP 151 (184)
Q Consensus 104 kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~h--kEaF~~aAknW~~~P 151 (184)
+-|.+-.|-+|||..|+++.-..|++++|+++. .|.-+.++..|+..+
T Consensus 11 kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 60 (86)
T 2eqz_A 11 GDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMS 60 (86)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence 345555678899999999999999999999974 999999999998754
No 15
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.58 E-value=0.00013 Score=50.66 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=40.2
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
+-.|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..+
T Consensus 4 ~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 47 (81)
T 1i11_A 4 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMT 47 (81)
T ss_dssp CSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCC
Confidence 34577999999999999999999999999999999999999754
No 16
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=97.57 E-value=9.2e-05 Score=51.37 Aligned_cols=45 Identities=24% Similarity=0.461 Sum_probs=39.9
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 107 EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 107 EKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
.|-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 5 ~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (83)
T 3f27_D 5 SRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 49 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 444678999999999999999999999999999999999998754
No 17
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=97.52 E-value=0.00011 Score=49.15 Aligned_cols=43 Identities=26% Similarity=0.460 Sum_probs=38.6
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 109 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 109 RQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 3 ~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (71)
T 4a3n_A 3 IRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 45 (71)
T ss_dssp --CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 3578899999999999999999999999999999999998744
No 18
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=97.51 E-value=0.00015 Score=48.77 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=38.7
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 029967 109 RQRVPSAYNRFIKEEIQRIKASNPDISH--REAFSTAAKNWAHFP 151 (184)
Q Consensus 109 RQRvpsayN~fmK~ei~riK~~~P~i~h--kEaF~~aAknW~~~P 151 (184)
-.|-+|||..|+++.-+.|+++||+++. .|.-+.++..|+..+
T Consensus 2 PKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls 46 (71)
T 1ckt_A 2 PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 46 (71)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCC
Confidence 3578999999999999999999999976 999999999998643
No 19
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=97.49 E-value=0.00017 Score=49.79 Aligned_cols=43 Identities=14% Similarity=0.332 Sum_probs=39.6
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 109 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 109 RQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 3 pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (80)
T 1gt0_D 3 VKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLS 45 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 3577999999999999999999999999999999999999754
No 20
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=97.41 E-value=0.00023 Score=54.64 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=42.8
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 104 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 104 kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
+-|.+-.|-+|||..|+++.-.+|++++|+++..|.-+.++..|+..+
T Consensus 84 kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 131 (159)
T 2gzk_A 84 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 131 (159)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSC
T ss_pred cccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 345556788999999999999999999999999999999999999754
No 21
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=97.40 E-value=0.00019 Score=49.25 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=39.1
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 110 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 110 QRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (79)
T 3u2b_C 4 KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLK 45 (79)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCC
Confidence 477899999999999999999999999999999999998654
No 22
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=97.37 E-value=0.00014 Score=50.69 Aligned_cols=47 Identities=23% Similarity=0.402 Sum_probs=41.1
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 029967 105 PPEKRQRVPSAYNRFIKEEIQRIKASNPDISH--REAFSTAAKNWAHFP 151 (184)
Q Consensus 105 PPEKRQRvpsayN~fmK~ei~riK~~~P~i~h--kEaF~~aAknW~~~P 151 (184)
-|.+-.|-+|||..|+++.-..|++++|+++. .|.-+.++..|+..+
T Consensus 4 dp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls 52 (83)
T 1aab_A 4 DPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMS 52 (83)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence 45556788999999999999999999999975 999999999998743
No 23
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.00027 Score=55.23 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=43.0
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 104 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 104 kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
+-|.+-.|-+|||..|+++...+|++++|+++..|.-+.++..|+..+
T Consensus 97 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 144 (173)
T 2yrq_A 97 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 144 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred cCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 345566788999999999999999999999999999999999999754
No 24
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=97.35 E-value=9.5e-05 Score=53.31 Aligned_cols=50 Identities=26% Similarity=0.381 Sum_probs=44.9
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCC--HHHHHHHHHHhhccCCc
Q 029967 103 IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDIS--HREAFSTAAKNWAHFPH 152 (184)
Q Consensus 103 ~kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~--hkEaF~~aAknW~~~P~ 152 (184)
.+.|.+-.|-+|||..|+++.-.+|++++|+++ ..|.-+.++..|+..+.
T Consensus 17 ~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~ 68 (97)
T 2lhj_A 17 KKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSD 68 (97)
T ss_dssp TSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCH
Confidence 356777788999999999999999999999999 99999999999997643
No 25
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=97.29 E-value=6e-05 Score=54.09 Aligned_cols=48 Identities=25% Similarity=0.477 Sum_probs=43.4
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 104 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 104 kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
+.|.+-.|-+|||..|+++.-..|+++||+++..|.-+.++..|+..+
T Consensus 16 kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 63 (93)
T 1cg7_A 16 KDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALT 63 (93)
T ss_dssp CCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 456666788999999999999999999999999999999999999754
No 26
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.27 E-value=0.00043 Score=48.58 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=39.2
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 110 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 110 QRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
.|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..+
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 45 (86)
T 2lef_A 4 KKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALS 45 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 467999999999999999999999999999999999999754
No 27
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.00064 Score=48.44 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=39.5
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhCCCCC-HHHHHHHHHHhhccCC
Q 029967 108 KRQRVPSAYNRFIKEEIQRIKASNPDIS-HREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~-hkEaF~~aAknW~~~P 151 (184)
+-.|-+|||..|+++.-..||++||+++ ..|.-+.++..|+..+
T Consensus 5 ~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls 49 (81)
T 2d7l_A 5 SSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLS 49 (81)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCC
Confidence 3356799999999999999999999998 9999999999998754
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.14 E-value=0.00064 Score=53.09 Aligned_cols=49 Identities=20% Similarity=0.382 Sum_probs=43.0
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCC--CCHHHHHHHHHHhhccCCc
Q 029967 104 RPPEKRQRVPSAYNRFIKEEIQRIKASNPD--ISHREAFSTAAKNWAHFPH 152 (184)
Q Consensus 104 kPPEKRQRvpsayN~fmK~ei~riK~~~P~--i~hkEaF~~aAknW~~~P~ 152 (184)
+-|.+-.|-+|||..|+++....|+++||+ ++-.|..+.++..|+..+.
T Consensus 11 ~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~ 61 (173)
T 2yrq_A 11 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSA 61 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCH
Confidence 456666788999999999999999999999 6899999999999987543
No 29
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=96.84 E-value=0.00087 Score=54.85 Aligned_cols=47 Identities=32% Similarity=0.541 Sum_probs=41.9
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 029967 106 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 152 (184)
Q Consensus 106 PEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P~ 152 (184)
|.+-.|-+|||..|+++....|+++||+++..|..+.++..|+..+.
T Consensus 7 p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~ 53 (214)
T 3tq6_A 7 ASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPD 53 (214)
T ss_dssp HHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCH
Confidence 44446789999999999999999999999999999999999997653
No 30
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=96.78 E-value=0.00099 Score=55.33 Aligned_cols=48 Identities=31% Similarity=0.497 Sum_probs=43.3
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 104 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 104 kPPEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
+-|.+-.|-+|||..|+++....|+++||+++..|..+.++..|+..+
T Consensus 37 ~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls 84 (238)
T 3tmm_A 37 VLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 84 (238)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 346666788999999999999999999999999999999999998754
No 31
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=96.63 E-value=0.0027 Score=48.68 Aligned_cols=46 Identities=13% Similarity=0.346 Sum_probs=42.0
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 106 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 106 PEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
|++..|-++||-.|++++-.+|+.++|+++..|.-+.++..|+..+
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls 47 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhh
Confidence 5666788999999999999999999999999999999999998654
No 32
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=96.33 E-value=0.0055 Score=45.38 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=37.4
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccC
Q 029967 109 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHF 150 (184)
Q Consensus 109 RQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~ 150 (184)
..|-+|||+.|+.+...++++++|+ ...|.-+.+...|+..
T Consensus 5 PKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~l 45 (91)
T 1l8y_A 5 PESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNM 45 (91)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Confidence 3467999999999999999999999 9999999999999974
No 33
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=96.24 E-value=0.0035 Score=41.85 Aligned_cols=38 Identities=34% Similarity=0.675 Sum_probs=34.1
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 110 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 110 QRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
.|-+|||..|+++.-..+|..+| .|..+.++..|+..+
T Consensus 4 KrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls 41 (67)
T 3fgh_A 4 KRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLS 41 (67)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCC
Confidence 56789999999999999999887 599999999999754
No 34
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=95.24 E-value=0.026 Score=41.20 Aligned_cols=40 Identities=13% Similarity=0.341 Sum_probs=32.0
Q ss_pred CCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 029967 111 RVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 152 (184)
Q Consensus 111 RvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P~ 152 (184)
|-+|||..|+++.+. +..+|+++..|.-+.++..|+..+.
T Consensus 11 rP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~ 50 (101)
T 1v63_A 11 PPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQ 50 (101)
T ss_dssp CCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCH
T ss_pred CCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCH
Confidence 358999999999964 3445567889999999999997543
No 35
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=95.15 E-value=0.022 Score=42.09 Aligned_cols=39 Identities=18% Similarity=0.488 Sum_probs=35.2
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 029967 110 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 152 (184)
Q Consensus 110 QRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P~ 152 (184)
.|-+|||..|+++.-..|| +++..|.-+.++..|+..+.
T Consensus 19 KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~ 57 (108)
T 1v64_A 19 KPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQ 57 (108)
T ss_dssp CCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCH
Confidence 5678999999999999988 89999999999999998654
No 36
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=94.28 E-value=0.011 Score=48.98 Aligned_cols=42 Identities=33% Similarity=0.600 Sum_probs=36.8
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 106 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 106 PEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
|.+-.|-+|||+.|+++...+||.++|+ |..+.++..|+..+
T Consensus 144 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 185 (238)
T 3tmm_A 144 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 185 (238)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCC
Confidence 5556788999999999999999988876 89999999999864
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=94.14 E-value=0.012 Score=47.99 Aligned_cols=42 Identities=33% Similarity=0.600 Sum_probs=36.5
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 106 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 106 PEKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
|.+-.|-+|||+.|+++...+|+.++|+ |..+.++..|+..+
T Consensus 112 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 153 (214)
T 3tq6_A 112 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 153 (214)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCC
T ss_pred ccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCC
Confidence 4455678999999999999999988886 89999999999865
No 38
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=93.44 E-value=0.0088 Score=43.99 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=34.5
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029967 107 EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 107 EKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 151 (184)
-+-.|.||||-.|+.++-.+||++||+++ +.|..+|+.|+..+
T Consensus 21 naPKRp~sAf~lf~~e~R~kik~enP~~s--~~~~eIse~Wk~ls 63 (90)
T 2yuk_A 21 ALGEMATVAPVLYTNINFPNLKEEFPDWT--TRVKQIAKLWRKAS 63 (90)
T ss_dssp HHGGGCSSSHHHHHHHHCTTHHHHCCSHH--HHHHHHHHHHHHSC
T ss_pred CCCCCCccHHHHHHHHhHHHHHHHCcCcc--chHHHHHHHHHcCC
Confidence 33467899999999999999999999985 33555669998743
No 39
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.33 E-value=0.14 Score=37.56 Aligned_cols=39 Identities=18% Similarity=0.429 Sum_probs=33.8
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHH---HHhhccC
Q 029967 110 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTA---AKNWAHF 150 (184)
Q Consensus 110 QRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~a---AknW~~~ 150 (184)
.|-+|||..|+++.-.+||.+ +++-.|.=+.. ...|+..
T Consensus 12 KRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~l 53 (93)
T 2cto_A 12 KASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALL 53 (93)
T ss_dssp CSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcC
Confidence 567999999999999999998 78888877777 8999874
No 40
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=64.14 E-value=2.4 Score=32.03 Aligned_cols=33 Identities=27% Similarity=0.564 Sum_probs=24.8
Q ss_pred eCCccceeeeccccCCC-cc----ceeeeecccCCCcc
Q 029967 14 HCNYCNTILAVSVPCSS-LF----NIVTVRCGHCANLL 46 (184)
Q Consensus 14 ~CnfC~TiLaVsVPcss-L~----~~VTVRCGHCtnLl 46 (184)
-|.-|+++|.=|+=|+- +- ..|.++|++|.+.-
T Consensus 67 ~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~k 104 (120)
T 1x0t_A 67 YCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIM 104 (120)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEE
Confidence 59999999997765541 21 25899999998764
No 41
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=61.50 E-value=2.5 Score=32.15 Aligned_cols=33 Identities=21% Similarity=0.603 Sum_probs=24.6
Q ss_pred eCCccceeeeccccCCC-cc----ceeeeecccCCCcc
Q 029967 14 HCNYCNTILAVSVPCSS-LF----NIVTVRCGHCANLL 46 (184)
Q Consensus 14 ~CnfC~TiLaVsVPcss-L~----~~VTVRCGHCtnLl 46 (184)
-|.-|+++|.=|+=|+- +- ..|.++|++|.+.-
T Consensus 62 ~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~k 99 (123)
T 2k3r_A 62 YCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIM 99 (123)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEE
Confidence 59999999987765541 11 35899999999764
No 42
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=59.17 E-value=4.9 Score=29.24 Aligned_cols=43 Identities=16% Similarity=0.328 Sum_probs=34.6
Q ss_pred eeeCCccceeeeccccCCCccceeeeecccCCCcccccccccc
Q 029967 12 YVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSAL 54 (184)
Q Consensus 12 YV~CnfC~TiLaVsVPcssL~~~VTVRCGHCtnLlsVNm~~ll 54 (184)
+-.|-|||..=+|+|=...--.+-++.|+-|.---..++..|.
T Consensus 23 ~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~ 65 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLS 65 (85)
T ss_dssp CCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSC
T ss_pred eEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCccC
Confidence 3579999999889988888888999999999866555555543
No 43
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=55.19 E-value=3.6 Score=35.76 Aligned_cols=29 Identities=24% Similarity=0.776 Sum_probs=23.1
Q ss_pred CceeeeeCCccceeeeccccCCCccceeeeecccCCCcc
Q 029967 8 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLL 46 (184)
Q Consensus 8 E~lCYV~CnfC~TiLaVsVPcssL~~~VTVRCGHCtnLl 46 (184)
+..=|-||++|.|- ...|-++|-+|.|--
T Consensus 204 ~G~R~l~Cs~C~t~----------W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 204 TGLRYLSCSLCACE----------WHYVRIKCSHCEESK 232 (309)
T ss_dssp CCEEEEEETTTCCE----------EECCTTSCSSSCCCS
T ss_pred CCcEEEEeCCCCCE----------EeecCcCCcCCCCCC
Confidence 44459999999885 477889999999953
No 44
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=34.87 E-value=14 Score=29.19 Aligned_cols=36 Identities=19% Similarity=0.469 Sum_probs=27.3
Q ss_pred eeeeCCcc---ceeeeccccCCCccceeeeecccCCCcccccccc
Q 029967 11 CYVHCNYC---NTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVS 52 (184)
Q Consensus 11 CYV~CnfC---~TiLaVsVPcssL~~~VTVRCGHCtnLlsVNm~~ 52 (184)
-||.|.-| +|.|.+- + .+...+|.-|....+|.++.
T Consensus 103 ~yVlC~~C~sPdT~L~k~---~---r~~~l~C~ACGa~~~V~~~k 141 (148)
T 2d74_B 103 EYVICPVCGSPDTKIIKR---D---RFHFLKCEACGAETPIQHLL 141 (148)
T ss_dssp HHSSCSSSCCTTCCCCBS---S---SSBCCCCSSSCCCCCCCC--
T ss_pred HEEECCCCCCcCcEEEEe---C---CEEEEEecCCCCCccccchh
Confidence 48999999 5777762 2 56778999999999998764
No 45
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=28.42 E-value=15 Score=22.65 Aligned_cols=7 Identities=71% Similarity=1.213 Sum_probs=5.8
Q ss_pred CCCCCCc
Q 029967 107 EKRQRVP 113 (184)
Q Consensus 107 EKRQRvp 113 (184)
-||||+|
T Consensus 26 pKRQR~P 32 (32)
T 3uky_C 26 PKRQRIP 32 (32)
T ss_pred cccccCC
Confidence 4899998
No 46
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=27.39 E-value=23 Score=26.77 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=19.8
Q ss_pred eCCccceeeeccccCCC-ccceeeeecccCCCc
Q 029967 14 HCNYCNTILAVSVPCSS-LFNIVTVRCGHCANL 45 (184)
Q Consensus 14 ~CnfC~TiLaVsVPcss-L~~~VTVRCGHCtnL 45 (184)
-|+-|+|-=+-.+-=.+ =--+|-|+|..|.|.
T Consensus 15 TC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 15 TCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEEEECTTTCCE
T ss_pred EccCCCCcchhhcCHHHhhCCEEEEEcCCCccc
Confidence 47888775432221111 124799999999996
No 47
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=26.59 E-value=33 Score=27.77 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=28.7
Q ss_pred eeeeCCcc---ceeeeccccCCCccceeeeecccCCCcccccccc
Q 029967 11 CYVHCNYC---NTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVS 52 (184)
Q Consensus 11 CYV~CnfC---~TiLaVsVPcssL~~~VTVRCGHCtnLlsVNm~~ 52 (184)
-||.|.-| +|.|.+.. -+ .+...+|--|....+|.++.
T Consensus 95 ~YVlC~~C~sPdT~L~k~~-~~---r~~~l~C~ACGa~~~V~~~~ 135 (170)
T 2g2k_A 95 KFVLCPECENPETDLHVNP-KK---QTIGNSCKACGYRGMLDTHH 135 (170)
T ss_dssp HHHSCTTTSSSCEEEEEET-TT---TEEEEEETTTCCCCCSCSSS
T ss_pred HeEECCCCCCCccEEEEec-CC---CEEEEEccccCCcccccccc
Confidence 48999999 57777621 12 34668999999999998874
No 48
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=24.37 E-value=37 Score=23.80 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Q 029967 118 RFIKEEIQRIKASNPDISHREAFSTAAKNW 147 (184)
Q Consensus 118 ~fmK~ei~riK~~~P~i~hkEaF~~aAknW 147 (184)
+=++.||.+|+++.-.|+-.+-|..=||+=
T Consensus 9 ~~l~~E~~~lk~E~~stSaQDeFAKWaKL~ 38 (65)
T 3sja_C 9 LAKVKERHELKEFNNSISAQDNYAKWTKNN 38 (65)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 457899999999999999999998777653
No 49
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.34 E-value=31 Score=23.06 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHhhCCCC
Q 029967 114 SAYNRFIKEEIQRIKASNPDI 134 (184)
Q Consensus 114 sayN~fmK~ei~riK~~~P~i 134 (184)
||-|.|++..|+|+|..|-.+
T Consensus 2 sarnaylrkkiarlkkdnlql 22 (52)
T 3he5_B 2 SARNAYLRKKIARLKKDNLQL 22 (52)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhhhhhhh
Confidence 678999999999999877544
No 50
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.77 E-value=32 Score=27.51 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=28.2
Q ss_pred eeeeCCcc---ceeeeccccCCCccceeeeecccCCCcccccccc
Q 029967 11 CYVHCNYC---NTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVS 52 (184)
Q Consensus 11 CYV~CnfC---~TiLaVsVPcssL~~~VTVRCGHCtnLlsVNm~~ 52 (184)
-||.|.-| +|.|.+. . ==.+...+|--|....+|.++.
T Consensus 102 ~YVlC~~C~sPdT~L~~~-~---~~r~~~l~C~ACGa~~~V~~~~ 142 (157)
T 2e9h_A 102 KFVLCPECENPETDLHVN-P---KKQTIGNSCKACGYRGMLDTHH 142 (157)
T ss_dssp HTTSCTTTCCSCCEEEEE-T---TTTEEEEECSSSCCEEECCCCS
T ss_pred HeEECCCCCCCccEEEEe-c---CCCEEEEEccCCCCCCcccchh
Confidence 48999999 4666652 0 1246788999999999998864
No 51
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.45 E-value=32 Score=23.99 Aligned_cols=12 Identities=33% Similarity=0.719 Sum_probs=9.8
Q ss_pred eeCCccceeeec
Q 029967 13 VHCNYCNTILAV 24 (184)
Q Consensus 13 V~CnfC~TiLaV 24 (184)
|.|..|.|+|+=
T Consensus 35 V~C~~Cgt~L~~ 46 (63)
T 3j20_W 35 VRCLICGATLVE 46 (63)
T ss_dssp EECSSSCCEEEE
T ss_pred EEccCcCCEEec
Confidence 778899988873
No 52
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=21.93 E-value=27 Score=22.23 Aligned_cols=13 Identities=38% Similarity=0.647 Sum_probs=10.3
Q ss_pred HHHHHHHHhhCCC
Q 029967 121 KEEIQRIKASNPD 133 (184)
Q Consensus 121 K~ei~riK~~~P~ 133 (184)
.+||+|||++|-+
T Consensus 20 deeIa~Lk~eN~e 32 (37)
T 1t6f_A 20 DNEIARLKKENKE 32 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH
Confidence 4799999998743
No 53
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=21.08 E-value=32 Score=24.54 Aligned_cols=20 Identities=25% Similarity=0.695 Sum_probs=14.0
Q ss_pred eeCCccceeeeccccCCCccceeeeeccc
Q 029967 13 VHCNYCNTILAVSVPCSSLFNIVTVRCGH 41 (184)
Q Consensus 13 V~CnfC~TiLaVsVPcssL~~~VTVRCGH 41 (184)
..|..|..++. +.|+..|||
T Consensus 53 ~~C~IC~~~~~---------~p~~~~CgH 72 (124)
T 3fl2_A 53 FQCICCQELVF---------RPITTVCQH 72 (124)
T ss_dssp TBCTTTSSBCS---------SEEECTTSC
T ss_pred CCCCcCChHHc---------CcEEeeCCC
Confidence 35888866543 567778999
No 54
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=21.07 E-value=46 Score=20.76 Aligned_cols=12 Identities=58% Similarity=0.656 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhh
Q 029967 119 FIKEEIQRIKAS 130 (184)
Q Consensus 119 fmK~ei~riK~~ 130 (184)
-|.||||.||++
T Consensus 13 aieeeiqaikee 24 (36)
T 1bb1_B 13 AIEEEIQAIKEE 24 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 466777777765
No 55
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural genomics, PSI-2, protein structure initiative; 1.85A {Pectobacterium carotovorum}
Probab=20.69 E-value=31 Score=27.47 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhCCCCCHHHHHH
Q 029967 120 IKEEIQRIKASNPDISHREAFS 141 (184)
Q Consensus 120 mK~ei~riK~~~P~i~hkEaF~ 141 (184)
|+++|..++++||++..++.-.
T Consensus 1 m~~~~~~~~~~~P~~~~~dla~ 22 (174)
T 2ph0_A 1 MTMTLNELLATNPDGTLEDIAG 22 (174)
T ss_dssp -CCCHHHHHHTCCCSCHHHHHH
T ss_pred ChHHHHHHHHHCcCchHHHHHH
Confidence 6778999999999998887544
No 56
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.27 E-value=35 Score=21.64 Aligned_cols=22 Identities=45% Similarity=0.816 Sum_probs=15.2
Q ss_pred eeeCCccceeeeccccCCCccceeeeecccC
Q 029967 12 YVHCNYCNTILAVSVPCSSLFNIVTVRCGHC 42 (184)
Q Consensus 12 YV~CnfC~TiLaVsVPcssL~~~VTVRCGHC 42 (184)
...|..|...+. +.|+..|||-
T Consensus 20 ~~~C~IC~~~~~---------~~~~~~CgH~ 41 (73)
T 2ysl_A 20 EVICPICLDILQ---------KPVTIDCGHN 41 (73)
T ss_dssp CCBCTTTCSBCS---------SEEECTTCCE
T ss_pred CCEeccCCcccC---------CeEEcCCCCh
Confidence 457888876553 4566789994
Done!