BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029968
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|B Chain B, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|P Chain P, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|Q Chain Q, Crystal Structure Of SetTAF-1betaINHAT
Length = 225
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 100/134 (74%), Gaps = 1/134 (0%)
Query: 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
+IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I IP+FW+T F++HP
Sbjct: 31 AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 90
Query: 86 ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
+ LL EED++ YL+ +EV +F+D+KSGY I F F NPYFE+ L+K F +++ G
Sbjct: 91 QVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HMNESG 149
Query: 146 SMKITATSIKWKEG 159
+T IKWK G
Sbjct: 150 DPSSKSTEIKWKSG 163
>pdb|3KYP|A Chain A, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|B Chain B, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|C Chain C, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|D Chain D, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|E Chain E, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|F Chain F, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
Length = 193
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Query: 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPA 86
++ ++IQ ++E+++ + + + + ++++Y E +KP+++KR++II+ IP FW HPA
Sbjct: 2 MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPA 61
Query: 87 LGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFS--PNPYFEDNKLTKTFTFLDDD 144
L +++ ED I +L L+++D D Y ITF F + E L K TF D++
Sbjct: 62 LSDIVP-EDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTF-DNN 119
Query: 145 GSMKITATSIKWKEGMGIPNGVNHEK 170
+ T IKWKEG V H +
Sbjct: 120 QEKVVECTRIKWKEGKNPIAAVTHNR 145
>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi
Length = 276
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 20/170 (11%)
Query: 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------KSIPD 75
+++KL+ Q E + ++ + QKY ++ P+YDKR + + ++P+
Sbjct: 20 TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 79
Query: 76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFK---DVKSGYSITFNFSPNPYFEDN 132
FWL A ++ + ++ + D++I YL+ + + K + K G+ ++F+F+PNP+F ++
Sbjct: 80 FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFHFAPNPFFSNS 139
Query: 133 KLTKTFTF--LDDDGS---MKITATSIKWKEGMGI--PNGVNHEKKGNKR 175
LTKT+ +D D + AT I W + I N V + N R
Sbjct: 140 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSR 189
>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From
Plasmodium Falciparum
pdb|3GYW|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From
Plasmodium Falciparum At 2.4 A Resolution
Length = 249
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 20/170 (11%)
Query: 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------KSIPD 75
+++KL+ Q E + ++ + QKY ++ P+YDKR + + ++P+
Sbjct: 10 TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 69
Query: 76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFK---DVKSGYSITFNFSPNPYFEDN 132
FWL A ++ + ++ + D++I YL+ + + K + K G+ ++F F+ NP+F ++
Sbjct: 70 FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNS 129
Query: 133 KLTKTFTF--LDDDGS---MKITATSIKWKEGMGI--PNGVNHEKKGNKR 175
LTKT+ +D D + AT I W + I N V + N R
Sbjct: 130 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSR 179
>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly
Protein (Nap)
Length = 359
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 20/170 (11%)
Query: 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------KSIPD 75
+++KL+ Q E + ++ + QKY ++ P+YDKR + + ++P+
Sbjct: 54 TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 113
Query: 76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDF---KDVKSGYSITFNFSPNPYFEDN 132
FWL A ++ + ++ + D++I YL+ + + K+ K G+ ++F F+ NP+F ++
Sbjct: 114 FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNS 173
Query: 133 KLTKTFTF--LDDDGS---MKITATSIKWKEGMGI--PNGVNHEKKGNKR 175
LTKT+ +D D + AT I W + I N V + N R
Sbjct: 174 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSR 223
>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365)
pdb|2Z2R|B Chain B, Nucleosome Assembly Proteins I (Nap-1, 74-365)
Length = 292
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 41 NEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFR 100
+E E + E E E K D + +K IP FWLTA + P + + +++ D ++
Sbjct: 80 GQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLE 139
Query: 101 YLSSLEVEDFKDVKSGYSITFNF--SPNPYFEDNKLTKTFTF 140
YL + +E D + G+ + F F S NP+F ++ L KT+ +
Sbjct: 140 YLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFY 181
>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A
Mechanism For Histone Binding And Shuttling
Length = 417
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 42 EEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRY 101
+E E + E E E K D + +K IP FWLTA + P + + +++ D ++ Y
Sbjct: 154 QEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEY 213
Query: 102 LSSLEVEDFKDVKSGYSITFNF--SPNPYFEDNKLTKTFTF 140
L + +E D + G+ + F F S NP+F ++ L KT+ +
Sbjct: 214 LQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFY 254
>pdb|3Q33|B Chain B, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
pdb|3Q35|B Chain B, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
Length = 232
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 13/132 (9%)
Query: 37 LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
L K EE EVE KPVY+KR+ I I +FW H + + D
Sbjct: 18 LAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 77
Query: 97 KIFRYLSSLEVE------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTF---LDD--D 144
K + ++VE + D + +SITF+F F++ ++TK F DD D
Sbjct: 78 KYIDTIDKIKVEWLALESEMYDTRD-FSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQED 136
Query: 145 GSMKITATSIKW 156
G + I+W
Sbjct: 137 GILTSEPVPIEW 148
>pdb|2ZD7|A Chain A, The Structure Of Vps75 (Vacuolar Protein
Sorting-Associated Protein 75)
pdb|2ZD7|B Chain B, The Structure Of Vps75 (Vacuolar Protein
Sorting-Associated Protein 75)
pdb|3Q66|A Chain A, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P6122)
pdb|3Q66|B Chain B, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P6122)
pdb|3Q68|A Chain A, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P212121)
pdb|3Q68|B Chain B, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P212121)
Length = 264
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 13/132 (9%)
Query: 37 LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
L K EE EVE KPVY+KR+ I I +FW H + + D
Sbjct: 18 LAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 77
Query: 97 KIFRYLSSLEVE------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTF---LDD--D 144
K + ++VE + D + +SITF+F F++ ++TK F DD D
Sbjct: 78 KYIDTIDKIKVEWLALESEMYDTRD-FSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQED 136
Query: 145 GSMKITATSIKW 156
G + I+W
Sbjct: 137 GILTSEPVPIEW 148
>pdb|3C9D|A Chain A, Crystal Structure Of Vps75
pdb|3C9D|B Chain B, Crystal Structure Of Vps75
Length = 259
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 37 LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
L K EE EVE KPVY+KR+ I I +FW H + + D
Sbjct: 18 LAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 77
Query: 97 KIFRYLSSLEVE------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTF---LDD--D 144
K + ++VE + D + +SITF+F F++ ++TK F DD D
Sbjct: 78 KYIDTIDKIKVEWLALESEMYDTRD-FSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQED 136
Query: 145 GSMKITATSIKWKE 158
G + I+W +
Sbjct: 137 GILTSEPVPIEWPQ 150
>pdb|3C9B|A Chain A, Crystal Structure Of Semet Vps75
pdb|3C9B|B Chain B, Crystal Structure Of Semet Vps75
Length = 259
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 19/135 (14%)
Query: 37 LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
L K EE EVE KPVY+KR+ I I +FW H + + D
Sbjct: 18 LAKCEEEVDAIEREVELYRLNKXKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 77
Query: 97 KIFRYLSSLEVE---------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTF---LDD 143
K + ++VE D +D +SITF+F F++ ++TK F DD
Sbjct: 78 KYIDTIDKIKVEWLALESEXYDTRD----FSITFHFHGIEGDFKEQQVTKVFQIKKGKDD 133
Query: 144 --DGSMKITATSIKW 156
DG + I+W
Sbjct: 134 QEDGILTSEPVPIEW 148
>pdb|3DM7|A Chain A, Crystal Structure Of The Vps75 Histone Chaperone
pdb|3DM7|B Chain B, Crystal Structure Of The Vps75 Histone Chaperone
Length = 234
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 19/135 (14%)
Query: 37 LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
L K EE EVE KPVY+KR+ I I +FW H + + D
Sbjct: 20 LAKCEEEVDAIEREVELYRLNKXKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 79
Query: 97 KIFRYLSSLEVE---------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTF---LDD 143
K + ++VE D +D +SITF+F F++ ++TK F DD
Sbjct: 80 KYXDTIDKIKVEWLALESEXYDTRD----FSITFHFHGIEGDFKEQQVTKVFQIKKGKDD 135
Query: 144 --DGSMKITATSIKW 156
DG + I+W
Sbjct: 136 QEDGILTSEPVPIEW 150
>pdb|3T7C|A Chain A, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Bound To Nad
pdb|3T7C|B Chain B, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Bound To Nad
pdb|3T7C|C Chain C, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Bound To Nad
pdb|3T7C|D Chain D, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Bound To Nad
Length = 299
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 90 LLSEEDQKIFRY-LSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMK 148
LL+E ++FR L + VEDF+ S + P PY E ++ FL D +
Sbjct: 229 LLNEPTYRMFRPDLENPTVEDFQVA----SRQMHVLPIPYVEPADISNAILFLVSDDARY 284
Query: 149 ITATSIKWKEG 159
IT S+ G
Sbjct: 285 ITGVSLPVDGG 295
>pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1210
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 20/142 (14%)
Query: 41 NEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFR 100
N SE+ E+ + I++ + DK I F TA +S + L +EE++ +
Sbjct: 628 NNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRFGWTALVSSGLIEYLDAEEEETVMI 687
Query: 101 YLSSLEVEDFKDVKSGYSITFNF--------SPNPYFED------------NKLTKTFTF 140
+S ++E + +++GY + +PNP+ L F
Sbjct: 688 AMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPHVHAWTHCEIHPAMILGILASIIPF 747
Query: 141 LDDDGSMKITATSIKWKEGMGI 162
D + S + T S K+ MG+
Sbjct: 748 PDHNQSPRNTYQSAMGKQAMGV 769
>pdb|3G6I|A Chain A, Crystal Structure Of An Outer Membrane Protein, Part Of A
Putative Carbohydrate Binding Complex (Bt_1022) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.93 A
Resolution
Length = 204
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 20/131 (15%)
Query: 15 NAEQIDSELVLSI-EKLQEIQDELEKINEEASEKVLEV-EQKYSEIRKPVYDKRNDIIKS 72
N E D + V SI + Q+I D+L + + +E V V +Y E+ +Y+ R+ +K+
Sbjct: 6 NKENRDPKYVESIVNRSQKIVDKLGLTDAKVAEDVCNVIANRYFEL-NDIYEIRDAKVKA 64
Query: 73 IPDFWLTAFISHPALGELLSEEDQKIFR-----------YLSSLEVEDFKD------VKS 115
+ + LT + AL +E+D ++R +L+ ++E KD VK
Sbjct: 65 VKESGLTGDAKNEALKAAENEKDAALYRSHFAFPASLSLFLNEEQIEAVKDGXTYGVVKV 124
Query: 116 GYSITFNFSPN 126
Y T + P+
Sbjct: 125 TYEATLDXIPS 135
>pdb|2Y6P|A Chain A, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
pdb|2Y6P|B Chain B, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
pdb|2Y6P|C Chain C, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
Length = 234
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 108 EDFKDV--KSGYSITFNFSPNPYFEDN 132
ED K V + GY++ F+ SP PYF N
Sbjct: 132 EDVKVVLDREGYALYFSRSPIPYFRKN 158
>pdb|1G6P|A Chain A, Solution Nmr Structure Of The Cold Shock Protein From The
Hyperthermophilic Bacterium Thermotoga Maritima
Length = 66
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 81 FISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITF 121
F S G + +E +F + S++E+E FK +K G + F
Sbjct: 8 FDSKKGYGFITKDEGGDVFVHWSAIEMEGFKTLKEGQVVEF 48
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 16 AEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIP 74
A+ ++ +L+ +L++I LEKI+EE+S+ VL + Q +I+ + + ++I I
Sbjct: 46 AKALEKASILTKTELEKILSGLEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGDIA 104
>pdb|2BZU|A Chain A, Human Adenovirus Serotype 41 Fiber Head
pdb|2BZV|A Chain A, Human Enteric Adenovirus Serotype 41 Short Fiber Head
(Ph8)
Length = 181
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 110 FKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGS 146
+ ++ SGY+ TF +S P + T F ++ + GS
Sbjct: 139 YNEINSGYAFTFKWSAEPGKPFHPPTAVFCYITEQGS 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.132 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,586,046
Number of Sequences: 62578
Number of extensions: 237242
Number of successful extensions: 903
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 821
Number of HSP's gapped (non-prelim): 104
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)