Query 029968
Match_columns 184
No_of_seqs 111 out of 592
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:27:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00007 (NAP-L) nucleosome as 100.0 6.8E-49 1.5E-53 338.6 17.1 173 12-184 28-225 (337)
2 KOG1507 Nucleosome assembly pr 100.0 9.4E-48 2E-52 327.5 13.4 171 14-184 66-291 (358)
3 PF00956 NAP: Nucleosome assem 100.0 1.8E-44 3.9E-49 300.6 17.7 160 24-184 1-194 (244)
4 PTZ00008 (NAP-S) nucleosome as 100.0 6.6E-44 1.4E-48 286.1 15.0 144 39-184 2-147 (185)
5 KOG1508 DNA replication factor 99.9 5.1E-27 1.1E-31 197.3 5.9 168 15-183 22-189 (260)
6 PF11629 Mst1_SARAH: C termina 96.5 0.012 2.6E-07 37.3 5.7 38 29-66 9-46 (49)
7 PF07352 Phage_Mu_Gam: Bacteri 93.4 0.32 7E-06 37.6 6.5 54 21-74 3-56 (149)
8 COG4396 Mu-like prophage host- 90.9 0.49 1.1E-05 36.6 4.7 65 12-76 9-73 (170)
9 PF07516 SecA_SW: SecA Wing an 74.7 12 0.00025 30.4 6.4 45 28-72 9-53 (214)
10 PF15290 Syntaphilin: Golgi-lo 61.5 36 0.00078 29.4 6.7 19 91-109 140-158 (305)
11 KOG0574 STE20-like serine/thre 53.4 20 0.00043 31.9 4.0 39 28-66 454-492 (502)
12 COG3074 Uncharacterized protei 50.0 64 0.0014 22.1 5.2 65 15-81 5-69 (79)
13 PF12998 ING: Inhibitor of gro 49.3 38 0.00083 23.7 4.4 65 14-82 8-75 (105)
14 PRK15422 septal ring assembly 48.5 59 0.0013 22.7 5.0 31 14-44 4-34 (79)
15 PF04902 Nab1: Conserved regio 43.3 43 0.00092 26.4 4.0 13 4-16 6-18 (166)
16 KOG3891 Secretory vesicle-asso 42.5 33 0.00071 30.6 3.7 87 17-107 174-271 (436)
17 TIGR00963 secA preprotein tran 38.1 79 0.0017 31.0 5.8 46 27-72 550-595 (745)
18 TIGR03714 secA2 accessory Sec 35.1 1E+02 0.0023 30.2 6.1 46 27-72 574-619 (762)
19 PF00284 Cytochrom_B559a: Lume 34.5 21 0.00045 21.7 0.8 10 124-133 10-19 (40)
20 PRK14082 hypothetical protein; 34.1 61 0.0013 21.7 3.1 9 71-79 55-63 (65)
21 PF06005 DUF904: Protein of un 33.8 1.5E+02 0.0033 20.0 5.4 27 17-43 7-33 (72)
22 PRK02539 hypothetical protein; 33.5 1E+02 0.0023 21.8 4.4 43 20-63 2-44 (85)
23 PRK12904 preprotein translocas 33.4 1.2E+02 0.0025 30.2 6.2 45 28-72 607-651 (830)
24 PRK12326 preprotein translocas 33.1 1.1E+02 0.0024 30.0 5.9 45 28-72 577-621 (764)
25 COG3883 Uncharacterized protei 32.9 1.5E+02 0.0033 25.3 6.1 43 59-101 99-152 (265)
26 PRK13611 photosystem II reacti 32.2 2E+02 0.0044 21.1 6.1 58 102-163 14-72 (104)
27 PRK09200 preprotein translocas 31.0 1.3E+02 0.0028 29.7 6.1 47 27-73 577-623 (790)
28 PRK12902 secA preprotein trans 31.0 1.3E+02 0.0028 30.3 6.0 45 28-72 722-766 (939)
29 PRK12903 secA preprotein trans 30.9 1.4E+02 0.0029 30.1 6.2 45 28-72 571-615 (925)
30 PF06320 GCN5L1: GCN5-like pro 30.4 2.3E+02 0.005 21.1 6.6 64 18-82 33-98 (121)
31 PRK12906 secA preprotein trans 30.0 1.4E+02 0.003 29.5 6.1 45 28-72 588-632 (796)
32 PF09340 NuA4: Histone acetylt 29.0 1.7E+02 0.0036 20.2 4.8 40 29-76 10-49 (80)
33 PRK11546 zraP zinc resistance 28.8 1.2E+02 0.0027 23.4 4.5 23 32-54 93-115 (143)
34 PRK13103 secA preprotein trans 28.4 1.6E+02 0.0034 29.7 6.1 45 28-72 625-669 (913)
35 PF08770 SoxZ: Sulphur oxidati 28.3 39 0.00085 24.3 1.6 48 81-130 20-71 (100)
36 PF10417 1-cysPrx_C: C-termina 28.2 17 0.00038 21.7 -0.2 15 150-164 10-24 (40)
37 PRK13104 secA preprotein trans 27.5 1.7E+02 0.0036 29.4 6.2 45 28-72 621-665 (896)
38 PF07426 Dynactin_p22: Dynacti 27.3 2.1E+02 0.0046 22.7 5.8 46 14-60 116-161 (174)
39 PHA02590 hypothetical protein; 27.3 2.5E+02 0.0053 20.4 6.0 37 43-79 5-46 (105)
40 PRK01546 hypothetical protein; 27.3 1.4E+02 0.003 20.8 4.1 44 19-63 2-45 (79)
41 CHL00122 secA preprotein trans 27.1 1.7E+02 0.0036 29.3 6.1 46 28-73 664-709 (870)
42 smart00502 BBC B-Box C-termina 26.8 2.3E+02 0.0049 19.8 6.4 52 24-75 17-68 (127)
43 PRK14145 heat shock protein Gr 26.5 3.5E+02 0.0077 22.0 7.5 65 1-69 25-89 (196)
44 PRK12899 secA preprotein trans 26.1 1.8E+02 0.0039 29.4 6.1 45 28-72 715-759 (970)
45 KOG4722 Zn-finger protein [Gen 25.9 3E+02 0.0065 25.5 7.0 14 1-14 230-243 (672)
46 PRK01631 hypothetical protein; 25.2 1.5E+02 0.0032 20.6 3.9 41 22-63 3-43 (76)
47 PRK13107 preprotein translocas 24.7 2E+02 0.0043 29.0 6.1 45 28-72 625-669 (908)
48 COG1382 GimC Prefoldin, chaper 24.2 3E+02 0.0066 20.6 5.8 25 17-41 2-26 (119)
49 PF06708 DUF1195: Protein of u 23.4 74 0.0016 24.7 2.4 24 59-84 97-120 (157)
50 PRK12901 secA preprotein trans 22.4 2.4E+02 0.0051 29.0 6.2 45 28-72 775-819 (1112)
51 PF05979 DUF896: Bacterial pro 21.7 2.6E+02 0.0056 18.7 5.1 41 22-63 2-42 (65)
52 PF11020 DUF2610: Domain of un 21.0 1.3E+02 0.0028 21.1 3.0 25 12-36 39-63 (82)
53 PF03993 DUF349: Domain of Unk 20.3 2.3E+02 0.005 18.4 4.2 47 35-82 5-57 (77)
54 PF07361 Cytochrom_B562: Cytoc 20.2 3.4E+02 0.0073 19.4 6.1 38 23-60 55-103 (103)
55 PF05276 SH3BP5: SH3 domain-bi 20.0 4.9E+02 0.011 21.8 6.8 52 18-69 4-72 (239)
No 1
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=100.00 E-value=6.8e-49 Score=338.56 Aligned_cols=173 Identities=31% Similarity=0.605 Sum_probs=158.3
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhc----------cCcchHHHHH
Q 029968 12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK----------SIPDFWLTAF 81 (184)
Q Consensus 12 ~~e~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~----------~Ip~FW~~vl 81 (184)
+++++..+|+.++.++.+|+.||.++..+++++++++++|+++|.++++|+|++|++||. |||+||++||
T Consensus 28 ~~~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G~~~~e~~~~gIP~FWl~vL 107 (337)
T PTZ00007 28 DDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQNGGAEIGTPGLPQFWLTAM 107 (337)
T ss_pred ccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCcccccccCCcccHHHHHH
Confidence 447788999999999999999999999999999999999999999999999999999999 7999999999
Q ss_pred hcCccccccCChhhHhhhcccceeEEEEecCCC-cceEEEEEeCCCCcccCCeEEEEEEeeCCC---CC--ceeeeeccc
Q 029968 82 ISHPALGELLSEEDQKIFRYLSSLEVEDFKDVK-SGYSITFNFSPNPYFEDNKLTKTFTFLDDD---GS--MKITATSIK 155 (184)
Q Consensus 82 ~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~~~~-~~f~i~F~F~~N~yF~N~~L~K~~~~~~~~---g~--~~~~~t~I~ 155 (184)
.||+.++.+|++.|+++|+||+||+|+++.+.. +||+|+|+|.|||||+|++|+|+|++...+ |+ ..+++|+|+
T Consensus 108 ~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~~p~~~~~~~t~I~ 187 (337)
T PTZ00007 108 KNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDEPLLSNTVATEID 187 (337)
T ss_pred HcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCCCceeecceeeece
Confidence 999999999999999999999999999887654 899999999999999999999999986523 33 356899999
Q ss_pred ccCCCCCCCcceeccCCCCc---------cCCCCCCCC
Q 029968 156 WKEGMGIPNGVNHEKKGNKR---------PLAEERLVF 184 (184)
Q Consensus 156 Wk~gk~~t~~~~~~k~~~~~---------~~~~~sfF~ 184 (184)
||+|+|||+++++|||++|+ +++.+|||+
T Consensus 188 WK~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFn 225 (337)
T PTZ00007 188 WKQGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFN 225 (337)
T ss_pred eeCCCCchhhhcccccccccCCCceeeccCCCCCChHH
Confidence 99999999999998877765 356789996
No 2
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=9.4e-48 Score=327.46 Aligned_cols=171 Identities=33% Similarity=0.633 Sum_probs=158.3
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh-----------------------
Q 029968 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------------------- 70 (184)
Q Consensus 14 e~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI----------------------- 70 (184)
+|+..+|+.|+.+|.+|++||.+.+.++.++.+++++||++|..+++|+|++|.+||
T Consensus 66 ~~v~~Lp~~Vk~Rv~aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~~EP~eee~e~~~~~~de~~~ 145 (358)
T KOG1507|consen 66 DMVENLPPAVKNRVLALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGEVEPTEEEIEWPEEIEDEGNL 145 (358)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCCccCccccccccccccccccc
Confidence 888999999999999999999999999999999999999999999999999999998
Q ss_pred ------------ccCcchHHHHHhcCccccccCChhhHhhhcccceeEEEEecCCCcceEEEEEeCCCCcccCCeEEEEE
Q 029968 71 ------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTF 138 (184)
Q Consensus 71 ------------~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~~~~~~f~i~F~F~~N~yF~N~~L~K~~ 138 (184)
+|||+||++||+|++.++++|+++|++||+||.||++.+.+++..||+|.|||.|||||+|++|||+|
T Consensus 146 ~e~~~~~~~~d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY 225 (358)
T KOG1507|consen 146 AEDTEEAEKEDPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTY 225 (358)
T ss_pred ccchhhhccccccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeee
Confidence 37999999999999999999999999999999999999998877999999999999999999999999
Q ss_pred Eee---CCCCC--------ceeeeecccccCCCCCCCcceeccCCCC---------ccCCCCCCCC
Q 029968 139 TFL---DDDGS--------MKITATSIKWKEGMGIPNGVNHEKKGNK---------RPLAEERLVF 184 (184)
Q Consensus 139 ~~~---~~~g~--------~~~~~t~I~Wk~gk~~t~~~~~~k~~~~---------~~~~~~sfF~ 184 (184)
++. +.++| ..|+||.|+|++|||+|++.++|||++| ++++.+||||
T Consensus 226 ~l~~~~D~~~P~~~~G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFN 291 (358)
T KOG1507|consen 226 FLKSEPDEDDPFAFDGPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFN 291 (358)
T ss_pred eeeccCCCcCCcccCCceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhh
Confidence 998 33343 3579999999999999999888876554 3477899997
No 3
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=100.00 E-value=1.8e-44 Score=300.64 Aligned_cols=160 Identities=40% Similarity=0.774 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc-------------------CcchHHHHHhcC
Q 029968 24 VLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS-------------------IPDFWLTAFISH 84 (184)
Q Consensus 24 ~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~-------------------Ip~FW~~vl~n~ 84 (184)
++++.+|+.||.+++.++.++++++++|+.+|+++++|+|++|++||+| ||+||++||.||
T Consensus 1 ~~~i~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~~~~~~~~~~~~~~~~~~gIP~FW~~vl~n~ 80 (244)
T PF00956_consen 1 KQRIEALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGKREPTEIEWEERQEEKPKGIPGFWLTVLKNH 80 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---HHHH-----SSSTTSTTHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccccccccccccchhhccccCCCCccccccccC
Confidence 4789999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccccccCChhhHhhhcccceeEEEEecCCCcceEEEEEeCCCCcccCCeEEEEEEeeCCCCC------ceeeeecccccC
Q 029968 85 PALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGS------MKITATSIKWKE 158 (184)
Q Consensus 85 ~~l~~~i~~~D~~iL~~L~dI~ve~~~~~~~~f~i~F~F~~N~yF~N~~L~K~~~~~~~~g~------~~~~~t~I~Wk~ 158 (184)
+.++++|++.|.++|+||+||+|++..++.++|+|+|+|++||||+|++|+|+|++.. .|. .++++|+|+||+
T Consensus 81 ~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~-~~~~~~~~~~~~~~t~I~Wk~ 159 (244)
T PF00956_consen 81 PLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKK-EGDEEDPDELKSESTPIDWKP 159 (244)
T ss_dssp HHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEES-SSSTTTT-EEEEEE---EBST
T ss_pred chhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEec-cCCCCCCCcceeeeecccccC
Confidence 9999999999999999999999999988889999999999999999999999999998 443 789999999999
Q ss_pred CCCCCCcceeccCCCCcc---------CCCCCCCC
Q 029968 159 GMGIPNGVNHEKKGNKRP---------LAEERLVF 184 (184)
Q Consensus 159 gk~~t~~~~~~k~~~~~~---------~~~~sfF~ 184 (184)
|+|+|.+.+.+|+++++. .+.+|||+
T Consensus 160 gkd~t~~~~~~k~~~k~~~~~~~~~~~~~~~SFF~ 194 (244)
T PF00956_consen 160 GKDLTKKEVKKKQKNKGTKQVRTITKEVPTESFFN 194 (244)
T ss_dssp TTCTTCCCCECECCSCCCH-ECCCCCCCC--SGGG
T ss_pred CCCccchhhhhcccccccccccceeecccCcchhh
Confidence 999999999887766542 45679985
No 4
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=100.00 E-value=6.6e-44 Score=286.08 Aligned_cols=144 Identities=28% Similarity=0.524 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCcchHHHHHhcCccccccCChhhHhhhcccceeEEEEecCCCcceE
Q 029968 39 KINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS 118 (184)
Q Consensus 39 ~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~~~~~~f~ 118 (184)
+|+.++++++++|+++|+++++|+|++|++||+|||+||++||.||+.++ +|++.|+++|+||+||+|++..++..||+
T Consensus 2 ~l~~e~~~e~~~le~ky~~~~~p~y~kR~~II~gIP~FW~~vl~n~~~~~-~I~~~D~~~L~~L~dI~ve~~~~~~~~f~ 80 (185)
T PTZ00008 2 ELDEECAKEQMNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLEDNLDNNGSYK 80 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCccHHHHHHHcCcccc-ccCHHHHHHHHHhCceEEEEeecCCCCEE
Confidence 47889999999999999999999999999999999999999999999999 99999999999999999997555578999
Q ss_pred EEEEeCC--CCcccCCeEEEEEEeeCCCCCceeeeecccccCCCCCCCcceeccCCCCccCCCCCCCC
Q 029968 119 ITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEERLVF 184 (184)
Q Consensus 119 i~F~F~~--N~yF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~~~~~~~sfF~ 184 (184)
|+|+|.+ ||||+|++|+|+|.+.. +++.++++|+|+||+|+|+|.+.+++++..+++.+..|||+
T Consensus 81 i~F~F~~~~N~yF~n~~LtK~y~~~~-~~~~~~~~t~I~Wk~gkn~t~~~~kk~~~~~~~~~~~SFF~ 147 (185)
T PTZ00008 81 ITLIFDEKAKEFMEPLVLVKHVIFKN-NQEKVVEVTKIKWKEGKSPIAAAEKARSDLDDECIVWSIFE 147 (185)
T ss_pred EEEEECCCCCCCcCCCEEEEEEEEec-CCCceeeeeecccCCCCCcceeeeeccCccccCCCCCChhh
Confidence 9999965 89999999999999987 66778899999999999999998886554556777899996
No 5
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]
Probab=99.93 E-value=5.1e-27 Score=197.28 Aligned_cols=168 Identities=40% Similarity=0.765 Sum_probs=153.2
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCcchHHHHHhcCccccccCChh
Q 029968 15 NAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEE 94 (184)
Q Consensus 15 ~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip~FW~~vl~n~~~l~~~i~~~ 94 (184)
.....+.+++.+++.|++||.+++.++++..++++.++++|...++|+|++|+.||+.||+||.+++.+|+.++.++.+.
T Consensus 22 ~l~~~~~~~~~~~~~l~~i~~e~~~~~~~a~~~~l~l~~~~~~~r~p~~~~r~~ii~~i~~fw~~~~~~hp~~~~~i~~~ 101 (260)
T KOG1508|consen 22 HLSRRGREIEEALETLENIQHELDRMNAKAEVEVLKLEQKFNRFRRPVYEKRRELIKEIPNFWVTAFLNHPTLSEWIPEE 101 (260)
T ss_pred ccccchhHHHhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhCchhhhhhHHHhhcccceeEEEecCCcHhhhhhhh
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhcccceeEEEEecCCCcceEEEEEeCCCCcccCCeEEEEEEeeCCCCCceeeeecccccCCCCCCCcceeccCCCC
Q 029968 95 DQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNK 174 (184)
Q Consensus 95 D~~iL~~L~dI~ve~~~~~~~~f~i~F~F~~N~yF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~ 174 (184)
|.+++.||.++.|+.+.+..+||++.|+|.+|+||.|..++|+|.+.. .|.+.+.+|+|.|+.|+++.........+++
T Consensus 102 ~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~-~~~~~s~~t~i~w~~~~~~~~~~~~~~~~~k 180 (260)
T KOG1508|consen 102 DEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKE-SGKPSSESTPISWKEGKPLPNPVKRGELKNK 180 (260)
T ss_pred hhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeec-ccCcccccccccccCCCCCcccccccccccc
Confidence 999999999999999988899999999999999999999999999988 8888899999999999999988773333344
Q ss_pred ccCCCCCCC
Q 029968 175 RPLAEERLV 183 (184)
Q Consensus 175 ~~~~~~sfF 183 (184)
+-....|||
T Consensus 181 ~~~~~~s~f 189 (260)
T KOG1508|consen 181 NGDGPKSFF 189 (260)
T ss_pred cCcccccHH
Confidence 444456666
No 6
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=96.52 E-value=0.012 Score=37.29 Aligned_cols=38 Identities=26% Similarity=0.553 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 029968 29 KLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR 66 (184)
Q Consensus 29 ~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R 66 (184)
.+.+||..+..|+.++++|+-++.+.|..+++|+.+.-
T Consensus 9 s~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldAi 46 (49)
T PF11629_consen 9 SYEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDAI 46 (49)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 35678899999999999999999999999999998753
No 7
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=93.39 E-value=0.32 Score=37.56 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCc
Q 029968 21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIP 74 (184)
Q Consensus 21 ~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip 74 (184)
+++-.++..+..+|.+++.++..+..++.+++..|.....|+-.+...+-..|-
T Consensus 3 ~~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~ 56 (149)
T PF07352_consen 3 EEADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQ 56 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999988777654443
No 8
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=90.94 E-value=0.49 Score=36.58 Aligned_cols=65 Identities=18% Similarity=0.353 Sum_probs=55.5
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCcch
Q 029968 12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF 76 (184)
Q Consensus 12 ~~e~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip~F 76 (184)
.+....+--.+|...|..+-+||.|...|+.++..++.+++..|.-+..|+-++-..+.++|..|
T Consensus 9 ~A~~a~q~~eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~y 73 (170)
T COG4396 9 PAIEAAQDKEEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAY 73 (170)
T ss_pred hHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 33444455578999999999999999999999999999999999999999998877777777665
No 9
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=74.75 E-value=12 Score=30.40 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 029968 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (184)
Q Consensus 28 ~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~ 72 (184)
.+++..|+..+..+-..-+.+++...--+.+++-+|.+|+.|+.+
T Consensus 9 ~~Ie~aQkkvE~~nf~~Rk~lleyD~Vl~~QR~~IY~~R~~iL~~ 53 (214)
T PF07516_consen 9 KSIEKAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYKQRDKILEG 53 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 466778999999999999999999999999999999999999964
No 10
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=61.51 E-value=36 Score=29.37 Aligned_cols=19 Identities=26% Similarity=0.686 Sum_probs=12.9
Q ss_pred CChhhHhhhcccceeEEEE
Q 029968 91 LSEEDQKIFRYLSSLEVED 109 (184)
Q Consensus 91 i~~~D~~iL~~L~dI~ve~ 109 (184)
+.+.|..|=+|..||.+..
T Consensus 140 L~ekDkGiQKYFvDINiQN 158 (305)
T PF15290_consen 140 LAEKDKGIQKYFVDINIQN 158 (305)
T ss_pred hchhhhhHHHHHhhhhhhH
Confidence 4456777777777777663
No 11
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=53.43 E-value=20 Score=31.86 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 029968 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR 66 (184)
Q Consensus 28 ~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R 66 (184)
-.|.+||..+-.++-.+.+++.+|.+.|..+++|+|+.-
T Consensus 454 ~~~e~Lq~rl~alDpmme~eieelrq~y~skrqpIldai 492 (502)
T KOG0574|consen 454 ITLEELQMRLKALDPMMEREIEELRQRYTSKRQPILDAI 492 (502)
T ss_pred ccHHHHHHHHHhcCHHHHHHHHHHHHHHhhccccHHHHh
Confidence 367889999999999999999999999999999999754
No 12
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.02 E-value=64 Score=22.07 Aligned_cols=65 Identities=15% Similarity=0.332 Sum_probs=39.1
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCcchHHHHH
Q 029968 15 NAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAF 81 (184)
Q Consensus 15 ~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip~FW~~vl 81 (184)
....+...++++++.+.-+|.+++.|.++-..-. -+..-....+.-++++++-++.--.=|-.-|
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~--~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLS--QEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455778899999999999999999876644211 1111112233445555555555455555444
No 13
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=49.26 E-value=38 Score=23.71 Aligned_cols=65 Identities=20% Similarity=0.317 Sum_probs=39.6
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHhhhhhhccCcchHHHHHh
Q 029968 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKP---VYDKRNDIIKSIPDFWLTAFI 82 (184)
Q Consensus 14 e~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~P---ly~~R~~iI~~Ip~FW~~vl~ 82 (184)
|.+..+|.+++..+..+.++..+...+-.+ +.+.-.+|.+.... -=+++...+..|..=+..++.
T Consensus 8 d~~~~LP~el~r~l~~irelD~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~ 75 (105)
T PF12998_consen 8 DSLENLPAELQRNLTLIRELDAKSQDLLEE----LDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALE 75 (105)
T ss_dssp TSGGGHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999998877775554433 33333344333321 012666677767666666553
No 14
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=48.54 E-value=59 Score=22.66 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=25.6
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029968 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEA 44 (184)
Q Consensus 14 e~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~ 44 (184)
|....+...++++++.+.-+|.|++.+..+-
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn 34 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677889999999999999999988763
No 15
>PF04902 Nab1: Conserved region in Nab1; InterPro: IPR006986 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This C-terminal region is found only in the Nab1 subfamily.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.27 E-value=43 Score=26.43 Aligned_cols=13 Identities=23% Similarity=0.148 Sum_probs=10.6
Q ss_pred Cccccchhccccc
Q 029968 4 DKGKKTKVEEENA 16 (184)
Q Consensus 4 ~~~~~~~~~~e~~ 16 (184)
|||||-|+++.+.
T Consensus 6 lSPKRIKtEdgf~ 18 (166)
T PF04902_consen 6 LSPKRIKTEDGFP 18 (166)
T ss_pred CCccceecccCCc
Confidence 8999999986543
No 16
>KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.51 E-value=33 Score=30.59 Aligned_cols=87 Identities=17% Similarity=0.280 Sum_probs=55.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhc--------cCcchHHHHHhcCcccc
Q 029968 17 EQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK--------SIPDFWLTAFISHPALG 88 (184)
Q Consensus 17 ~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~--------~Ip~FW~~vl~n~~~l~ 88 (184)
..++|++...+++....|.......+-+.+--+..=+| .--+-+-|.-+++ .+-+||..+-.....++
T Consensus 174 qELDPdt~k~meKFRkaQt~Vr~aK~nfDklkmD~~QK----VDLL~AsRcNllSh~Lt~YqteL~~f~~Kta~tf~ti~ 249 (436)
T KOG3891|consen 174 QELDPDTDKQMEKFRKAQTQVRSAKENFDKLKMDVCQK----VDLLGASRCNLLSHVLTTYQTELLEFWSKTARTFETIH 249 (436)
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHhccchhhhHHHHH----HhHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888887665554444322222222 2224445555553 57799998876666665
Q ss_pred ccC---ChhhHhhhcccceeEE
Q 029968 89 ELL---SEEDQKIFRYLSSLEV 107 (184)
Q Consensus 89 ~~i---~~~D~~iL~~L~dI~v 107 (184)
+.+ .++|..+|++|.+=.-
T Consensus 250 ea~~~y~~YdF~~Lk~L~~~~~ 271 (436)
T KOG3891|consen 250 EACIGYNPYDFEILKHLQDGTK 271 (436)
T ss_pred HHhcCCCccchHHHHHhccCCC
Confidence 443 5899999999986543
No 17
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=38.10 E-value=79 Score=30.96 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 029968 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (184)
Q Consensus 27 i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~ 72 (184)
-..+...|+..+..+-...+.+++...--+.+++-+|.+|++++.+
T Consensus 550 ~~~~~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iY~~R~~il~~ 595 (745)
T TIGR00963 550 TRALESAQKRVEARNFDIRKQLLEYDDVLNKQREVIYAERRRILES 595 (745)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHcc
Confidence 3567778999999999999999999999999999999999999964
No 18
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=35.06 E-value=1e+02 Score=30.24 Aligned_cols=46 Identities=28% Similarity=0.375 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 029968 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (184)
Q Consensus 27 i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~ 72 (184)
-..+...|+..+..+-+..+.+++...--+.+++-+|++|+.|+.+
T Consensus 574 ~~~i~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iy~~R~~il~~ 619 (762)
T TIGR03714 574 RKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEG 619 (762)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3567778999999999999999999999999999999999999965
No 19
>PF00284 Cytochrom_B559a: Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit family.; InterPro: IPR013082 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The alpha subunit (PsbE) of cytochrome b559, forms a haem-binding heterodimer with the beta subunit (PsbF) (IPR006241 from INTERPRO) within the reaction centre core of PSII. Both PsbE and PsbF are essential components for PSII assembly, and are probably involved in secondary electron transport mechanisms that help to protect PSII from photo-damage []. This domain occurs in the lumenal region of the alpha subunit. It is usually found in conjuction with an N-terminal domain (IPR013081 from INTERPRO).; GO: 0046872 metal ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane; PDB: 1W5C_K 1S5L_e 3BZ2_E 3PRQ_E 2AXT_E 4FBY_R 3PRR_E 3BZ1_E 3KZI_E 3A0H_E ....
Probab=34.49 E-value=21 Score=21.68 Aligned_cols=10 Identities=40% Similarity=1.056 Sum_probs=6.3
Q ss_pred CCCCcccCCe
Q 029968 124 SPNPYFEDNK 133 (184)
Q Consensus 124 ~~N~yF~N~~ 133 (184)
+||+||++..
T Consensus 10 RPneYft~~r 19 (40)
T PF00284_consen 10 RPNEYFTESR 19 (40)
T ss_dssp -TTCSS-SS-
T ss_pred Cccccccccc
Confidence 5899999863
No 20
>PRK14082 hypothetical protein; Provisional
Probab=34.13 E-value=61 Score=21.74 Aligned_cols=9 Identities=33% Similarity=1.062 Sum_probs=7.1
Q ss_pred ccCcchHHH
Q 029968 71 KSIPDFWLT 79 (184)
Q Consensus 71 ~~Ip~FW~~ 79 (184)
..+||||--
T Consensus 55 ~e~PGF~ef 63 (65)
T PRK14082 55 QEVPGFWEF 63 (65)
T ss_pred ccCCcHHHh
Confidence 578999964
No 21
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.77 E-value=1.5e+02 Score=20.05 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=22.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029968 17 EQIDSELVLSIEKLQEIQDELEKINEE 43 (184)
Q Consensus 17 ~~~~~~~~~~i~~L~~lQ~e~~~l~~e 43 (184)
..+...++.+++.+..+|.+++.|..+
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999988765
No 22
>PRK02539 hypothetical protein; Provisional
Probab=33.54 E-value=1e+02 Score=21.75 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 029968 20 DSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVY 63 (184)
Q Consensus 20 ~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply 63 (184)
+.++..+|..|+..+++ ..|..+-..|..+|.+.|...++--+
T Consensus 2 ~~~~I~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~~~ 44 (85)
T PRK02539 2 DPKKIARINELAKKKKT-EGLTGEEKVEQAKLREEYIEGYRRSV 44 (85)
T ss_pred CHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999998886 55555556677778888877655444
No 23
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=33.40 E-value=1.2e+02 Score=30.24 Aligned_cols=45 Identities=24% Similarity=0.480 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 029968 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (184)
Q Consensus 28 ~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~ 72 (184)
..+...|+..+..+-...+.+++...--+.+++-+|.+|+.|+.+
T Consensus 607 ~~i~~aQ~~~e~~~~~~Rk~~l~yd~v~~~QR~~iY~~R~~iL~~ 651 (830)
T PRK12904 607 RAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEG 651 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 466778999999999999999999999999999999999999965
No 24
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=33.07 E-value=1.1e+02 Score=30.00 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 029968 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (184)
Q Consensus 28 ~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~ 72 (184)
..++..|+..+..+-+..+.+++...-.+.+++-+|.+|+.|+.+
T Consensus 577 ~~i~~aQk~vE~~~~~~Rk~~~~yd~v~~~QR~~iy~~R~~il~~ 621 (764)
T PRK12326 577 DLVDHAQRVAEGQLLEIHANTWRYNQLIAQQRAIIVERRERLLRT 621 (764)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 466778999999999999999998888899999999999999854
No 25
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.90 E-value=1.5e+02 Score=25.32 Aligned_cols=43 Identities=19% Similarity=0.447 Sum_probs=26.6
Q ss_pred hhhhHHhhhh--hhccCcchHHHHHhcCccccccCC---------hhhHhhhcc
Q 029968 59 RKPVYDKRND--IIKSIPDFWLTAFISHPALGELLS---------EEDQKIFRY 101 (184)
Q Consensus 59 ~~Ply~~R~~--iI~~Ip~FW~~vl~n~~~l~~~i~---------~~D~~iL~~ 101 (184)
++-+|..|-. .+.|=..+...|+.++--|+++|+ +.|..+|+-
T Consensus 99 r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~ 152 (265)
T COG3883 99 RQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQ 152 (265)
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444554422 234666678889988888887765 456666543
No 26
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=32.23 E-value=2e+02 Score=21.05 Aligned_cols=58 Identities=14% Similarity=0.223 Sum_probs=39.9
Q ss_pred cceeEEEEecCCCcceEEEEEeC-CCCcccCCeEEEEEEeeCCCCCceeeeecccccCCCCCC
Q 029968 102 LSSLEVEDFKDVKSGYSITFNFS-PNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIP 163 (184)
Q Consensus 102 L~dI~ve~~~~~~~~f~i~F~F~-~N~yF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~~t 163 (184)
+.+|++....+. ..=..+|.|. |+. ....++- .++.+++|+.++.........|++-.
T Consensus 14 ~p~VrLtRsrdg-~~g~a~f~F~~~~~--~~~~itg-m~liDeEGei~tr~v~~KFvnGkp~~ 72 (104)
T PRK13611 14 PTQVRLLKSKTG-KRGSAIFRFEDLKS--DTQNILG-MRMIDEEGELTTRNIKAKFLNGEFKA 72 (104)
T ss_pred CCceEEEEccCC-CccEEEEEEcCCcc--cccceee-EEEEccCCcEEEEecceEEECCCccE
Confidence 689999977663 4456899994 566 3456777 44444489877777777777777543
No 27
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=30.99 E-value=1.3e+02 Score=29.69 Aligned_cols=47 Identities=23% Similarity=0.237 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccC
Q 029968 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSI 73 (184)
Q Consensus 27 i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~I 73 (184)
...+...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+-
T Consensus 577 ~~~~~~aQ~~~e~~~~~~R~~~~~~d~~~~~QR~~iy~~R~~~l~~~ 623 (790)
T PRK09200 577 HKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEED 623 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45677789999999999999999999999999999999999999754
No 28
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=30.96 E-value=1.3e+02 Score=30.31 Aligned_cols=45 Identities=18% Similarity=0.417 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 029968 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (184)
Q Consensus 28 ~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~ 72 (184)
.+|...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 722 k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~ 766 (939)
T PRK12902 722 RSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG 766 (939)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 567778999999999999999999988999999999999999965
No 29
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=30.90 E-value=1.4e+02 Score=30.08 Aligned_cols=45 Identities=22% Similarity=0.390 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 029968 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (184)
Q Consensus 28 ~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~ 72 (184)
.++...|+..+..+-+..+.+++...--+.+++-+|.+|++++.+
T Consensus 571 ~~ie~AQkkvE~~nfdiRK~ll~yDdV~n~QR~~IY~~R~~iL~~ 615 (925)
T PRK12903 571 KALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIA 615 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 466778999999998888888888888899999999999999964
No 30
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=30.41 E-value=2.3e+02 Score=21.07 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCcch--HHHHHh
Q 029968 18 QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF--WLTAFI 82 (184)
Q Consensus 18 ~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip~F--W~~vl~ 82 (184)
.+.+.+...+..+=..|..|+....++...+..+.+.-.+... +.+.=+.-++.|-+| |..++-
T Consensus 33 ~l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~-~~~~~~~~LKEiGDveNWa~~iE 98 (121)
T PF06320_consen 33 ALVDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLK-LVDSFNDALKEIGDVENWAEMIE 98 (121)
T ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccHHHHHHHHH
Confidence 3445566667777777888887777777777777766555444 666666777788777 888774
No 31
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=30.04 E-value=1.4e+02 Score=29.51 Aligned_cols=45 Identities=20% Similarity=0.408 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 029968 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (184)
Q Consensus 28 ~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~ 72 (184)
..+...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 588 ~~i~~aQ~~~e~~~~~~Rk~l~~~d~v~~~QR~~iY~~R~~il~~ 632 (796)
T PRK12906 588 RQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQVINE 632 (796)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 466778999999998888999999988999999999999999976
No 32
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=28.96 E-value=1.7e+02 Score=20.21 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCcch
Q 029968 29 KLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF 76 (184)
Q Consensus 29 ~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip~F 76 (184)
.=+.|+.++.. ++++|+++|-.|..... .-.-||+|..+|
T Consensus 10 ~k~~Le~~L~~----lE~qIy~~Et~YL~~~~----~~GNiikGfd~y 49 (80)
T PF09340_consen 10 KKKKLEKDLAA----LEKQIYDKETSYLEDTS----PYGNIIKGFDGY 49 (80)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHccC----cCCCCeeChhhh
Confidence 33334444444 44667778887766222 224577887777
No 33
>PRK11546 zraP zinc resistance protein; Provisional
Probab=28.75 E-value=1.2e+02 Score=23.44 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029968 32 EIQDELEKINEEASEKVLEVEQK 54 (184)
Q Consensus 32 ~lQ~e~~~l~~e~~~e~~~le~k 54 (184)
.+..|+..|..++..+..+....
T Consensus 93 aL~kEI~~Lr~kL~e~r~~~~~~ 115 (143)
T PRK11546 93 AVAKEMENLRQSLDELRVKRDIA 115 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444433333
No 34
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=28.44 E-value=1.6e+02 Score=29.69 Aligned_cols=45 Identities=24% Similarity=0.433 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 029968 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (184)
Q Consensus 28 ~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~ 72 (184)
..++..|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 625 ~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~~IY~~R~~iL~~ 669 (913)
T PRK13103 625 NAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRNSLLAA 669 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 466778999999999999999999999999999999999999853
No 35
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=28.27 E-value=39 Score=24.32 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=20.7
Q ss_pred HhcCccccccCChhhHhh--hcccceeEEEEecCCCcceEEEEEe--CCCCccc
Q 029968 81 FISHPALGELLSEEDQKI--FRYLSSLEVEDFKDVKSGYSITFNF--SPNPYFE 130 (184)
Q Consensus 81 l~n~~~l~~~i~~~D~~i--L~~L~dI~ve~~~~~~~~f~i~F~F--~~N~yF~ 130 (184)
|..||.-.-+-.+.+... -.|++.++|.+.+ ..-+++.+.. .+||||+
T Consensus 20 li~HPMetGl~~d~tg~~iPa~~I~~v~v~~ng--~~v~~~~~~~siS~NP~l~ 71 (100)
T PF08770_consen 20 LISHPMETGLRKDQTGKYIPAHFIEEVEVTYNG--KPVFRADWGPSISENPYLR 71 (100)
T ss_dssp EE----B-S-BB-TTS-BB--B-EEEEEEEETT--EEEEEEEE-TTB-SS-EEE
T ss_pred EEECCCccccccCCCCCCCChHheEEEEEEECC--EEEEEEEeCCcccCCCcEE
Confidence 445554443332222222 2699999999643 4445555555 5799985
No 36
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=28.16 E-value=17 Score=21.73 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=12.7
Q ss_pred eeecccccCCCCCCC
Q 029968 150 TATSIKWKEGMGIPN 164 (184)
Q Consensus 150 ~~t~I~Wk~gk~~t~ 164 (184)
..||..|+.|.++..
T Consensus 10 v~tPanW~pGd~~iv 24 (40)
T PF10417_consen 10 VATPANWKPGDDVIV 24 (40)
T ss_dssp SBBCTTTCTTSGEBE
T ss_pred cccCcCCCCCCCeEc
Confidence 578999999998764
No 37
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=27.47 E-value=1.7e+02 Score=29.42 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 029968 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (184)
Q Consensus 28 ~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~ 72 (184)
..+...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 621 ~~i~~aQ~~vE~~~~~~Rk~ll~yd~V~n~QR~~iY~~R~~iL~~ 665 (896)
T PRK13104 621 RAIENAQRKLEGHHFDVRKQLLDYDNVANDQRQVIYTQRASIMAM 665 (896)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 466678999999999999999999989999999999999999953
No 38
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=27.31 E-value=2.1e+02 Score=22.69 Aligned_cols=46 Identities=30% Similarity=0.350 Sum_probs=35.6
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029968 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60 (184)
Q Consensus 14 e~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~ 60 (184)
+++..+|... ..+..|..++.+..+.-.+...++.++-..|++...
T Consensus 116 e~i~~vp~~~-~kL~~L~~~~~~Q~e~~~~ls~~~~~Ll~~YN~ii~ 161 (174)
T PF07426_consen 116 ESIRNVPELC-DKLQKLSQIHLEQQEESEELSEEVQELLQQYNKIIL 161 (174)
T ss_pred HHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5565565544 778888888888888888888888888888887543
No 39
>PHA02590 hypothetical protein; Provisional
Probab=27.27 E-value=2.5e+02 Score=20.40 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhhhh-----hhccCcchHHH
Q 029968 43 EASEKVLEVEQKYSEIRKPVYDKRND-----IIKSIPDFWLT 79 (184)
Q Consensus 43 e~~~e~~~le~k~~~~~~Ply~~R~~-----iI~~Ip~FW~~ 79 (184)
++..++..|.++|-.+.+-+-.-|+. ||++|..|...
T Consensus 5 ~~~e~Vi~LaqKY~~~k~il~~IRr~~ie~KII~~i~~fY~i 46 (105)
T PHA02590 5 EMQEKVINLAQKYTNQKRILRLIRRSNIEEKIIKEISEFYGI 46 (105)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45567777778886665554444443 56788999887
No 40
>PRK01546 hypothetical protein; Provisional
Probab=27.26 E-value=1.4e+02 Score=20.82 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 029968 19 IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVY 63 (184)
Q Consensus 19 ~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply 63 (184)
+++++..+|..|+..+++ ..|..+-..|..+|...|...++--+
T Consensus 2 ~~~~~i~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~~~ 45 (79)
T PRK01546 2 LSHELVERINFLAKKAKA-EGLTEEEQRERQSLREQYLKGFRQNM 45 (79)
T ss_pred CcHHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999998886 45555556677777777766554433
No 41
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=27.06 E-value=1.7e+02 Score=29.31 Aligned_cols=46 Identities=24% Similarity=0.447 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccC
Q 029968 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSI 73 (184)
Q Consensus 28 ~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~I 73 (184)
..+...|+..+..+-...+.+++...-.+.+++-+|.+|+.++.+-
T Consensus 664 ~~i~~aQ~~vE~~~~~~Rk~ll~yD~v~~~QR~~iY~~R~~iL~~~ 709 (870)
T CHL00122 664 KSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILESQ 709 (870)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4677789999999999999999999999999999999999999763
No 42
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=26.82 E-value=2.3e+02 Score=19.82 Aligned_cols=52 Identities=10% Similarity=0.385 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhccCcc
Q 029968 24 VLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPD 75 (184)
Q Consensus 24 ~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~Ip~ 75 (184)
......+..++..+..++.........+...|...+.-+-+++..++..|..
T Consensus 17 ~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~ 68 (127)
T smart00502 17 AELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEE 68 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666677777777777888888888888888888888865443
No 43
>PRK14145 heat shock protein GrpE; Provisional
Probab=26.51 E-value=3.5e+02 Score=21.97 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=28.8
Q ss_pred CCCCccccchhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhh
Q 029968 1 MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDI 69 (184)
Q Consensus 1 ~~~~~~~~~~~~~e~~~~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~i 69 (184)
|-||+.--|--........+.++..--..|..++.++..+..++.+ +...+..-++-.-.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~le~e~~el~d~~lR----~~AEfeN~rkR~~kE~e~~ 89 (196)
T PRK14145 25 MEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQEYLDIAQR----LKAEFENYRKRTEKEKSEM 89 (196)
T ss_pred cCCCcHHHHHhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3344333333333333444444444344555566666655544444 3444433333333344333
No 44
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=26.14 E-value=1.8e+02 Score=29.45 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 029968 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (184)
Q Consensus 28 ~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~ 72 (184)
..+...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 715 ~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~vIY~~R~~iL~~ 759 (970)
T PRK12899 715 RLIETAQKRVEGRNYTIRKHTLEYDDVMNKQRQTIYAFRNDVLHA 759 (970)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 466678999999998888888888888899999999999999965
No 45
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=25.87 E-value=3e+02 Score=25.47 Aligned_cols=14 Identities=7% Similarity=0.423 Sum_probs=10.3
Q ss_pred CCCCccccchhccc
Q 029968 1 MVADKGKKTKVEEE 14 (184)
Q Consensus 1 ~~~~~~~~~~~~~e 14 (184)
|++||-||.-.+++
T Consensus 230 l~SPSRkR~~ad~~ 243 (672)
T KOG4722|consen 230 LLSPSRKRGHADDD 243 (672)
T ss_pred hcCchhhccccccc
Confidence 57788888877653
No 46
>PRK01631 hypothetical protein; Provisional
Probab=25.17 E-value=1.5e+02 Score=20.55 Aligned_cols=41 Identities=10% Similarity=0.268 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 029968 22 ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVY 63 (184)
Q Consensus 22 ~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply 63 (184)
++..+|..|+..+++ ..|..+-..|..+|...|...++--+
T Consensus 3 ~ii~RINeLakK~K~-~gLT~eE~~Eq~~LR~eYl~~fR~~~ 43 (76)
T PRK01631 3 NILFRINELSKKEKA-TGLTVDEKQEQQMLRQNYTQTFRGSL 43 (76)
T ss_pred hHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999988886 45555556677778888877655444
No 47
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=24.65 E-value=2e+02 Score=28.96 Aligned_cols=45 Identities=22% Similarity=0.452 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 029968 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (184)
Q Consensus 28 ~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~ 72 (184)
..++..|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 625 ~~i~~aQ~~vE~~~~~~Rk~ll~yD~V~n~QR~vIY~~R~~iL~~ 669 (908)
T PRK13107 625 RAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVYAQRNELMDA 669 (908)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 466668999999998888889988888999999999999999954
No 48
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.22 E-value=3e+02 Score=20.61 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Q 029968 17 EQIDSELVLSIEKLQEIQDELEKIN 41 (184)
Q Consensus 17 ~~~~~~~~~~i~~L~~lQ~e~~~l~ 41 (184)
..+|+++++-+..+..+|.++..+-
T Consensus 2 ~~lpp~~q~~l~q~QqLq~ql~~~~ 26 (119)
T COG1382 2 EQLPPEVQAQLAQLQQLQQQLQKVI 26 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999998775
No 49
>PF06708 DUF1195: Protein of unknown function (DUF1195); InterPro: IPR010608 This family consists of several plant specific hypothetical proteins of around 160 residues in length. The function of this family is unknown.
Probab=23.42 E-value=74 Score=24.69 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=16.0
Q ss_pred hhhhHHhhhhhhccCcchHHHHHhcC
Q 029968 59 RKPVYDKRNDIIKSIPDFWLTAFISH 84 (184)
Q Consensus 59 ~~Ply~~R~~iI~~Ip~FW~~vl~n~ 84 (184)
+=-+|.+-. =-++|.||..+|...
T Consensus 97 MWDvYt~s~--~vrLPrFWqEAFeAA 120 (157)
T PF06708_consen 97 MWDVYTRSR--RVRLPRFWQEAFEAA 120 (157)
T ss_pred HHHHhcCCC--CccCchHHHHHHHHH
Confidence 334565443 246899999999744
No 50
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=22.41 E-value=2.4e+02 Score=29.04 Aligned_cols=45 Identities=18% Similarity=0.367 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc
Q 029968 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (184)
Q Consensus 28 ~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~ 72 (184)
.+++..|+..+..+-..-+.+++...--+.++.-+|.+|+.++.+
T Consensus 775 ksIe~AQkkvE~~nf~iRK~lleYDdVmn~QR~vIY~~R~~iL~~ 819 (1112)
T PRK12901 775 KSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHALMG 819 (1112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456678999999998888888988888999999999999999854
No 51
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=21.71 E-value=2.6e+02 Score=18.70 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 029968 22 ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVY 63 (184)
Q Consensus 22 ~~~~~i~~L~~lQ~e~~~l~~e~~~e~~~le~k~~~~~~Ply 63 (184)
++..+|..|+..++.- .|..+-..|..+|.++|...++.-+
T Consensus 2 e~i~RINeLa~K~K~~-gLT~eE~~Eq~~LR~eYl~~fR~~~ 42 (65)
T PF05979_consen 2 EKIDRINELAKKSKEE-GLTEEEKAEQAELRQEYLQNFRGNF 42 (65)
T ss_dssp HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHTTHHHH
T ss_pred cHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999888844 4454555667778888877655444
No 52
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=20.99 E-value=1.3e+02 Score=21.10 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=19.4
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHH
Q 029968 12 EEENAEQIDSELVLSIEKLQEIQDE 36 (184)
Q Consensus 12 ~~e~~~~~~~~~~~~i~~L~~lQ~e 36 (184)
++|--+++|++|.+++.+|-+|-.+
T Consensus 39 skeRgG~IP~~V~~sl~kL~~La~~ 63 (82)
T PF11020_consen 39 SKERGGQIPEKVMDSLSKLYKLAKE 63 (82)
T ss_pred HHhhCCCCCHHHHHHHHHHHHHHHH
Confidence 4466789999999998888666554
No 53
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=20.29 E-value=2.3e+02 Score=18.37 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhcc------CcchHHHHHh
Q 029968 35 DELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS------IPDFWLTAFI 82 (184)
Q Consensus 35 ~e~~~l~~e~~~e~~~le~k~~~~~~Ply~~R~~iI~~------Ip~FW~~vl~ 82 (184)
.++..+-..+.....+....-...+.-.++++.+||.. .++ |..+..
T Consensus 5 ~~F~~a~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d-~~~~~~ 57 (77)
T PF03993_consen 5 KRFRAACDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESED-WKEAAE 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHH
Confidence 33444444444444444444444444555555555542 334 666553
No 54
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=20.17 E-value=3.4e+02 Score=19.44 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhh
Q 029968 23 LVLSIEKLQEIQDELEKINEEA-----------SEKVLEVEQKYSEIRK 60 (184)
Q Consensus 23 ~~~~i~~L~~lQ~e~~~l~~e~-----------~~e~~~le~k~~~~~~ 60 (184)
+..-.+.|..|..+++.++... .+++..++.+|+++++
T Consensus 55 ~~~Y~~Gl~~li~~id~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~r 103 (103)
T PF07361_consen 55 VKDYQEGLDKLIDQIDKAEALAEAGKLDEAKAALKKLDDLRKEYHKKFR 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhcC
Confidence 3344555555666665555432 3466677777877653
No 55
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=20.00 E-value=4.9e+02 Score=21.82 Aligned_cols=52 Identities=27% Similarity=0.516 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH---HHhhhhhHHhhhhh
Q 029968 18 QIDSELVLSIEKLQEIQDELEKINEEASEK--------------VLEVEQKY---SEIRKPVYDKRNDI 69 (184)
Q Consensus 18 ~~~~~~~~~i~~L~~lQ~e~~~l~~e~~~e--------------~~~le~k~---~~~~~Ply~~R~~i 69 (184)
.++|-|+..|+.|..--.+|+.++.++... +..+-.++ ..+.+|+|+.|...
T Consensus 4 ~~dprVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a 72 (239)
T PF05276_consen 4 ELDPRVQEELEKLNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKA 72 (239)
T ss_pred ccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 466667766666666555555555544322 22222222 23568999888654
Done!