BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029969
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LL9|A Chain A, X-Ray Structures Of Isopentenyl Phosphate Kinase
pdb|3LL9|B Chain B, X-Ray Structures Of Isopentenyl Phosphate Kinase
Length = 269
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 18/154 (11%)
Query: 13 GNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGC--AILSGDVIIRHLAAYMKPDYVVF 70
G + AD+S++ ++ G VPV++GD VLD + +++SGD +I H + + P+ V+
Sbjct: 119 GRISHADISLIRSYLEEGXVPVVYGDVVLDSDRRLKFSVISGDQLINHFSLRLXPERVIL 178
Query: 71 LTDVLGVYS-HPPTEPNAVLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMV 129
TDV GVY+ +P P+A LL I +D L+ ++ + D TGG V
Sbjct: 179 GTDVDGVYTRNPKKHPDARLLDVIGSLDD---------LESLDGTLNT-----DVTGGXV 224
Query: 130 TKISEAAMIAKLGIDVYIVKAASSHSV-KALSGE 162
KI E ++A+ G++ I+ AA ++ +AL GE
Sbjct: 225 GKIRELLLLAEKGVESEIINAAVPGNIERALLGE 258
>pdb|3LKK|A Chain A, Crystal Structure Of The Isopentenyl Phosphate Kinase
Substr Complex
pdb|3LKK|B Chain B, Crystal Structure Of The Isopentenyl Phosphate Kinase
Substr Complex
Length = 249
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 33/164 (20%)
Query: 19 DLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVY 78
D + + + I +GFVPV +GD + D I SGD I+ +A +KPD VFLTDV G+Y
Sbjct: 114 DYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIY 173
Query: 79 SH-PPTEPNAVLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAM 137
S P P+AVLLR+I T T + N D TGG+ K +M
Sbjct: 174 SKDPKRNPDAVLLRDID---------TNITFDRVQN---------DVTGGIGKKFE--SM 213
Query: 138 IAKLGIDVYIVKAASSHSVKALSGELREKIPD----DWLGTVIH 177
+ +K++ + V ++G E+I D ++GTVI
Sbjct: 214 VK--------MKSSVKNGVYLINGNHPERIGDIGKESFIGTVIR 249
>pdb|3LL5|A Chain A, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
pdb|3LL5|B Chain B, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
pdb|3LL5|C Chain C, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
pdb|3LL5|D Chain D, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
Length = 249
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 19 DLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVY 78
D + + + I +GFVPV +GD + D I SGD I A +KPD VFLTDV G+Y
Sbjct: 114 DYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIXADXAELLKPDVAVFLTDVDGIY 173
Query: 79 SH-PPTEPNAVLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAM 137
S P P+AVLLR+I T T + N D TGG+ K
Sbjct: 174 SKDPKRNPDAVLLRDID---------TNITFDRVQN---------DVTGGIGKKFESXVK 215
Query: 138 IAKLGID-VYIVKAASSHSVKALSGELREKIPDDWLGTVIH 177
+ VY++ + + E ++GTVI
Sbjct: 216 XKSSVKNGVYLINGNHPERIGDIGKE-------SFIGTVIR 249
>pdb|3K4O|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From
Methanocaldococcus Jannaschii
pdb|3K4O|B Chain B, Crystal Structure Of Isopentenyl Phosphate Kinase From
Methanocaldococcus Jannaschii
pdb|3K4Y|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ipp
pdb|3K4Y|B Chain B, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ipp
pdb|3K52|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ip
pdb|3K52|B Chain B, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ip
pdb|3K56|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ipp Beta-S
pdb|3K56|B Chain B, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ipp Beta-S
Length = 266
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 79/170 (46%), Gaps = 33/170 (19%)
Query: 13 GNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLT 72
G+ + D S + + +K VPV+HGD V+DD G I+SGD I+ +LA +K D +++ T
Sbjct: 126 GDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYAT 185
Query: 73 DVLGVY--SHPPTEPNAVLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVT 130
DV GV + P + + +I GS SI D TGGM
Sbjct: 186 DVDGVLIDNKPIKRIDKNNIYKILNYLSGSNSI-------------------DVTGGMKY 226
Query: 131 KISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLGTVIHFS 179
KI MI K ++ ++++ KAL GE+ GT I FS
Sbjct: 227 KIE---MIRKNKCRGFVFNGNKANNIYKALLGEVE--------GTEIDFS 265
>pdb|2W21|A Chain A, Crystal Structure Of The Aminoacid Kinase Domain Of The
Glutamate 5 Kinase Of Escherichia Coli
Length = 259
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 21/121 (17%)
Query: 59 LAAYMK-PDYVVFLTDVLGVYS-HPPTEPNAVLLREIAVGEDGSWSITKPTLQHMNNQVE 116
LAA + D ++ LTD G+Y+ P + P A L++++ +D +I ++ +
Sbjct: 155 LAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLG---- 210
Query: 117 ITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSVKALSGELREKIPDDWLGTVI 176
TGGM TK+ A + + GID I ++ S + G++ E I +GT+
Sbjct: 211 --------TGGMSTKLQAADVACRAGIDTII----AAGSKPGVIGDVMEGIS---VGTLF 255
Query: 177 H 177
H
Sbjct: 256 H 256
>pdb|2J5V|A Chain A, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5V|B Chain B, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5T|H Chain H, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|A Chain A, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|B Chain B, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|C Chain C, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|D Chain D, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|E Chain E, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|F Chain F, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|G Chain G, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
Length = 367
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 20/113 (17%)
Query: 66 DYVVFLTDVLGVYS-HPPTEPNAVLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDT 124
D ++ LTD G+Y+ P + P A L++++ +D +I ++ +
Sbjct: 163 DKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLG------------ 210
Query: 125 TGGMVTKISEAAMIAKLGIDVYIVKAASSHSVKALSGELREKIPDDWLGTVIH 177
TGGM TK+ A + + GID I ++ S + G++ E I +GT+ H
Sbjct: 211 TGGMSTKLQAADVACRAGIDTII----AAGSKPGVIGDVMEGIS---VGTLFH 256
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 132 ISEAAMIAKLGIDVYIVKAASSHSVKALSG--ELREKIPDDWL 172
I A + K G+DV +V A +H++KA+ E+R+K+ D++
Sbjct: 230 IKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKVDADFI 272
>pdb|3KZF|A Chain A, Structure Of Giardia Carbamate Kinase
pdb|3KZF|B Chain B, Structure Of Giardia Carbamate Kinase
pdb|3KZF|C Chain C, Structure Of Giardia Carbamate Kinase
pdb|3KZF|D Chain D, Structure Of Giardia Carbamate Kinase
Length = 317
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 19 DLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVY 78
D +V+ G +P + V+ V A++ D+ LA + DY++ LTDVL
Sbjct: 186 DNNVLVICTNGGGIPCKRENKVISGVD--AVIDKDLATSLLAKTLNSDYLMILTDVLNAC 243
Query: 79 SHPPTEPNAVLLREIAVGE 97
+ +P+ L EI + E
Sbjct: 244 IN-YKKPDERKLEEIKLSE 261
>pdb|1HVQ|A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein
With Chitinase And Lysozyme Activity, And Its Complex
With An Inhibitor
pdb|1LLO|A Chain A, Hevamine A (A Plant EndochitinaseLYSOZYME) COMPLEXED WITH
Allosamidin
pdb|2HVM|A Chain A, Hevamine A At 1.8 Angstrom Resolution
Length = 273
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 37 GDAVLD----DVQGCAILSGDVIIRHLAAYMKPDYVVFLT 72
GDAVLD D++ + L D + R+L+AY K V+LT
Sbjct: 115 GDAVLDGIDFDIEHGSTLYWDDLARYLSAYSKQGKKVYLT 154
>pdb|3U6U|A Chain A, Crystal Structure Of The Putative Acetylglutamate Kinase
From Thermus Thermophilus
pdb|3U6U|C Chain C, Crystal Structure Of The Putative Acetylglutamate Kinase
From Thermus Thermophilus
Length = 269
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 27 IKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPN 86
+++G++PVL A+ + + GD I LA + +V+L++V G+ + P E
Sbjct: 147 LQAGYLPVLTPPALSYENEAINT-DGDQIAALLATLYGAEALVYLSNVPGLLARYPDE-- 203
Query: 87 AVLLREIAV 95
A L+REI V
Sbjct: 204 ASLVREIPV 212
>pdb|2AKO|A Chain A, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|B Chain B, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|C Chain C, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|D Chain D, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
Length = 251
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 62 YMKPDYVVFLTDVLGVYSHPPTE-PNAVLLREIA-VGEDGSWSITKPTLQHMNNQVEITV 119
+ D +V L+D+ G Y P+E +A L +I + E+ W Q I
Sbjct: 152 FFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEE--WL-----------QATIKT 198
Query: 120 AAHDTTGGMVTKISEAAMI 138
+ TGG+VTK+ A +
Sbjct: 199 GSEHGTGGIVTKLKAAKFL 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,742,514
Number of Sequences: 62578
Number of extensions: 220820
Number of successful extensions: 625
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 24
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)