Query 029969
Match_columns 184
No_of_seqs 115 out of 1275
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:28:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1608 Predicted archaeal kin 100.0 7.6E-31 1.6E-35 214.2 13.2 151 1-178 100-252 (252)
2 cd04241 AAK_FomA-like AAK_FomA 100.0 6.3E-30 1.4E-34 212.4 14.5 153 1-176 99-252 (252)
3 cd04256 AAK_P5CS_ProBA AAK_P5C 99.9 3.4E-27 7.4E-32 199.8 12.2 139 17-177 137-284 (284)
4 PRK12314 gamma-glutamyl kinase 99.9 1.2E-26 2.7E-31 194.8 14.7 143 17-179 120-265 (266)
5 COG0263 ProB Glutamate 5-kinas 99.9 1.5E-26 3.2E-31 197.9 14.1 141 20-182 120-263 (369)
6 PRK14058 acetylglutamate/acety 99.9 2.4E-26 5.3E-31 193.0 13.7 134 13-178 132-267 (268)
7 cd04242 AAK_G5K_ProB AAK_G5K_P 99.9 6.1E-26 1.3E-30 188.8 13.8 134 20-177 113-251 (251)
8 PTZ00489 glutamate 5-kinase; P 99.9 5.1E-26 1.1E-30 190.8 12.4 138 19-179 117-260 (264)
9 PRK13402 gamma-glutamyl kinase 99.9 1.8E-25 3.8E-30 195.2 15.3 142 20-183 118-262 (368)
10 CHL00202 argB acetylglutamate 99.9 1.1E-25 2.5E-30 190.5 13.5 139 11-177 142-283 (284)
11 PRK00942 acetylglutamate kinas 99.9 1.5E-25 3.3E-30 189.3 14.0 137 12-179 144-283 (283)
12 PRK05429 gamma-glutamyl kinase 99.9 2.4E-25 5.2E-30 194.9 15.0 141 20-182 122-265 (372)
13 PLN02512 acetylglutamate kinas 99.9 2.5E-25 5.5E-30 190.4 13.6 140 11-178 167-309 (309)
14 cd04250 AAK_NAGK-C AAK_NAGK-C: 99.9 2.2E-25 4.7E-30 188.1 12.8 137 12-176 140-279 (279)
15 TIGR01027 proB glutamate 5-kin 99.9 4.3E-25 9.4E-30 192.7 15.1 140 21-182 115-257 (363)
16 COG0548 ArgB Acetylglutamate k 99.9 3.1E-25 6.7E-30 185.0 12.9 142 5-178 121-265 (265)
17 cd04249 AAK_NAGK-NC AAK_NAGK-N 99.9 5.6E-25 1.2E-29 183.0 12.1 132 13-176 119-252 (252)
18 cd04238 AAK_NAGK-like AAK_NAGK 99.9 7.6E-25 1.7E-29 182.5 12.9 135 12-176 120-256 (256)
19 TIGR01092 P5CS delta l-pyrroli 99.9 1.7E-24 3.7E-29 202.9 13.4 158 2-181 110-278 (715)
20 cd04251 AAK_NAGK-UC AAK_NAGK-U 99.9 6.1E-24 1.3E-28 177.5 11.4 123 13-161 128-252 (257)
21 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.9 1.4E-23 3.1E-28 177.4 13.5 139 5-176 139-280 (280)
22 PRK05279 N-acetylglutamate syn 99.9 1.4E-23 3E-28 187.1 13.7 141 13-180 151-293 (441)
23 PRK12686 carbamate kinase; Rev 99.9 3.5E-23 7.6E-28 176.8 12.8 139 7-177 157-311 (312)
24 cd02115 AAK Amino Acid Kinases 99.9 1.5E-23 3.3E-28 172.5 10.2 136 12-176 110-248 (248)
25 PRK12353 putative amino acid k 99.9 3.7E-23 7.9E-28 177.5 12.4 132 18-178 173-314 (314)
26 TIGR00761 argB acetylglutamate 99.9 4.1E-23 8.9E-28 169.6 11.7 114 12-147 117-231 (231)
27 PLN02418 delta-1-pyrroline-5-c 99.9 5.1E-23 1.1E-27 192.9 13.1 144 17-181 136-286 (718)
28 cd04252 AAK_NAGK-fArgBP AAK_NA 99.9 7.3E-23 1.6E-27 170.3 12.5 133 11-176 111-248 (248)
29 TIGR01890 N-Ac-Glu-synth amino 99.9 2.3E-22 5E-27 178.8 13.0 136 12-180 142-281 (429)
30 PRK12454 carbamate kinase-like 99.9 6.7E-22 1.5E-26 168.8 12.8 134 16-178 171-313 (313)
31 cd04236 AAK_NAGS-Urea AAK_NAGS 99.9 6E-22 1.3E-26 166.7 11.2 132 11-176 134-271 (271)
32 cd04235 AAK_CK AAK_CK: Carbama 99.9 1.1E-21 2.3E-26 167.5 12.5 132 17-177 168-308 (308)
33 PF00696 AA_kinase: Amino acid 99.9 1.9E-21 4.1E-26 159.5 13.1 117 17-149 121-242 (242)
34 TIGR00746 arcC carbamate kinas 99.9 1.2E-21 2.5E-26 167.7 11.6 132 17-177 169-309 (310)
35 PRK12352 putative carbamate ki 99.9 2.6E-21 5.5E-26 165.9 13.2 135 15-178 171-315 (316)
36 PRK14558 pyrH uridylate kinase 99.9 9.7E-22 2.1E-26 161.7 10.2 127 15-179 103-231 (231)
37 cd04255 AAK_UMPK-MosAB AAK_UMP 99.9 4.2E-21 9.2E-26 161.0 12.6 135 15-177 120-262 (262)
38 cd04239 AAK_UMPK-like AAK_UMPK 99.9 2.5E-21 5.5E-26 159.0 10.6 123 17-177 105-229 (229)
39 TIGR02076 pyrH_arch uridylate 99.9 4.6E-21 1E-25 156.6 12.0 127 19-177 92-221 (221)
40 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.9 5.7E-21 1.2E-25 156.2 12.6 129 17-177 90-221 (221)
41 PRK14556 pyrH uridylate kinase 99.9 8.3E-21 1.8E-25 157.7 13.4 127 14-178 120-248 (249)
42 PRK00358 pyrH uridylate kinase 99.8 6.9E-21 1.5E-25 156.4 11.4 121 19-177 109-231 (231)
43 KOG1154 Gamma-glutamyl kinase 99.8 3.5E-21 7.6E-26 156.9 9.4 138 20-180 135-277 (285)
44 cd04246 AAK_AK-DapG-like AAK_A 99.8 6.7E-21 1.4E-25 157.3 11.0 121 12-153 108-232 (239)
45 PRK14557 pyrH uridylate kinase 99.8 2.2E-20 4.8E-25 155.5 13.9 126 18-181 113-241 (247)
46 PRK09411 carbamate kinase; Rev 99.8 9.5E-21 2.1E-25 160.4 11.8 129 16-177 162-296 (297)
47 cd04254 AAK_UMPK-PyrH-Ec UMP k 99.8 8.4E-21 1.8E-25 156.2 11.0 124 16-177 106-231 (231)
48 cd04261 AAK_AKii-LysC-BS AAK_A 99.8 1.1E-20 2.3E-25 156.2 11.1 121 12-153 108-232 (239)
49 PRK12354 carbamate kinase; Rev 99.8 1.5E-20 3.2E-25 160.2 11.8 131 17-180 162-302 (307)
50 TIGR02075 pyrH_bact uridylate 99.8 3.4E-20 7.3E-25 152.9 12.3 123 17-177 108-233 (233)
51 COG0528 PyrH Uridylate kinase 99.8 9.9E-20 2.1E-24 148.8 10.4 124 17-178 112-238 (238)
52 cd04260 AAK_AKi-DapG-BS AAK_AK 99.8 1.7E-19 3.8E-24 149.6 11.4 119 13-152 114-236 (244)
53 cd04234 AAK_AK AAK_AK: Amino A 99.8 4.1E-19 8.8E-24 145.8 10.2 119 14-153 96-219 (227)
54 PRK04531 acetylglutamate kinas 99.8 2.5E-18 5.3E-23 151.8 12.6 129 23-180 122-251 (398)
55 PRK06635 aspartate kinase; Rev 99.8 8.1E-18 1.8E-22 148.4 12.3 119 13-152 111-233 (404)
56 PLN02825 amino-acid N-acetyltr 99.8 7.8E-18 1.7E-22 152.5 12.2 152 5-180 147-366 (515)
57 PRK08210 aspartate kinase I; R 99.7 1E-17 2.2E-22 147.9 11.9 119 13-152 116-238 (403)
58 TIGR00656 asp_kin_monofn aspar 99.7 2.6E-17 5.6E-22 145.0 12.4 121 13-154 111-236 (401)
59 PRK08841 aspartate kinase; Val 99.7 9.3E-17 2E-21 141.6 11.9 119 13-152 111-233 (392)
60 TIGR02078 AspKin_pair Pyrococc 99.7 1.3E-16 2.9E-21 137.5 11.5 113 17-153 144-262 (327)
61 TIGR00657 asp_kinases aspartat 99.7 1.6E-16 3.5E-21 141.8 12.4 118 15-153 153-274 (441)
62 PRK07431 aspartate kinase; Pro 99.7 2E-16 4.3E-21 145.8 12.0 118 13-151 111-234 (587)
63 cd04240 AAK_UC AAK_UC: Unchara 99.7 1.6E-16 3.4E-21 128.8 9.8 120 19-176 80-203 (203)
64 COG0549 ArcC Carbamate kinase 99.7 4.2E-16 9.2E-21 130.4 10.1 134 16-178 170-312 (312)
65 PRK08373 aspartate kinase; Val 99.7 1.1E-15 2.3E-20 132.5 11.7 111 18-152 155-270 (341)
66 PRK06291 aspartate kinase; Pro 99.6 3E-15 6.5E-20 134.7 12.2 111 22-153 180-294 (465)
67 cd04244 AAK_AK-LysC-like AAK_A 99.6 8E-15 1.7E-19 125.2 10.3 109 23-153 177-290 (298)
68 COG0527 LysC Aspartokinases [A 99.5 1.6E-13 3.4E-18 122.9 10.9 116 15-153 158-280 (447)
69 cd04259 AAK_AK-DapDC AAK_AK-Da 99.5 2.9E-13 6.2E-18 115.5 11.5 113 20-153 170-287 (295)
70 cd04245 AAK_AKiii-YclM-BS AAK_ 99.5 3E-13 6.5E-18 115.0 10.8 116 17-153 161-280 (288)
71 PRK05925 aspartate kinase; Pro 99.5 4.3E-13 9.2E-18 120.0 10.7 108 26-154 161-272 (440)
72 cd04243 AAK_AK-HSDH-like AAK_A 99.4 6.5E-13 1.4E-17 113.2 10.5 112 21-153 169-285 (293)
73 cd04257 AAK_AK-HSDH AAK_AK-HSD 99.4 3.8E-13 8.2E-18 114.7 8.5 109 20-153 169-286 (294)
74 PRK09084 aspartate kinase III; 99.4 1.6E-12 3.4E-17 116.6 11.1 112 21-154 166-281 (448)
75 cd04247 AAK_AK-Hom3 AAK_AK-Hom 99.4 4.3E-12 9.3E-17 108.7 11.4 114 29-179 189-306 (306)
76 PRK08961 bifunctional aspartat 99.4 2.9E-12 6.4E-17 122.9 10.8 114 19-153 178-296 (861)
77 PRK09034 aspartate kinase; Rev 99.4 6E-12 1.3E-16 113.1 11.2 116 17-153 161-280 (454)
78 PRK09436 thrA bifunctional asp 99.3 7.2E-12 1.6E-16 119.6 11.3 113 21-154 172-289 (819)
79 cd04258 AAK_AKiii-LysC-EC AAK_ 99.3 4.3E-11 9.3E-16 102.0 10.5 106 27-153 175-284 (292)
80 COG2054 Uncharacterized archae 99.2 2E-11 4.3E-16 96.6 7.2 121 24-179 87-211 (212)
81 PLN02551 aspartokinase 99.2 6.2E-11 1.3E-15 108.1 11.0 105 28-153 230-339 (521)
82 PRK09466 metL bifunctional asp 99.2 2.3E-10 4.9E-15 109.2 10.9 113 20-153 173-291 (810)
83 PRK09181 aspartate kinase; Val 99.0 2.1E-09 4.6E-14 97.1 10.9 111 20-153 182-302 (475)
84 cd04248 AAK_AK-Ectoine AAK_AK- 98.9 1E-08 2.2E-13 87.7 10.2 111 20-153 176-296 (304)
85 KOG2436 Acetylglutamate kinase 98.4 5.2E-07 1.1E-11 81.0 5.1 108 13-139 219-326 (520)
86 KOG0456 Aspartate kinase [Amin 98.3 4.4E-07 9.5E-12 79.6 3.8 114 29-180 258-377 (559)
87 COG1778 Low specificity phosph 84.0 2.2 4.7E-05 33.6 4.6 56 69-156 10-65 (170)
88 TIGR02726 phenyl_P_delta pheny 77.1 7 0.00015 30.6 5.5 13 69-81 9-21 (169)
89 TIGR00620 sporelyase spore pho 50.0 31 0.00068 28.0 4.4 58 67-146 26-88 (199)
90 PF11305 DUF3107: Protein of u 37.8 38 0.00082 23.1 2.7 28 49-76 19-47 (74)
91 TIGR01670 YrbI-phosphatas 3-de 36.1 1.2E+02 0.0025 22.9 5.6 26 69-94 3-30 (154)
92 PLN03017 trehalose-phosphatase 32.2 1.5E+02 0.0032 26.4 6.1 29 51-79 95-123 (366)
93 PRK09484 3-deoxy-D-manno-octul 30.9 1.5E+02 0.0033 22.9 5.6 14 67-80 21-34 (183)
94 TIGR00734 hisAF_rel hisA/hisF 28.9 1.1E+02 0.0024 24.8 4.6 52 10-72 163-214 (221)
95 PLN02151 trehalose-phosphatase 28.0 2.1E+02 0.0046 25.2 6.5 26 54-79 85-110 (354)
96 COG4026 Uncharacterized protei 26.7 1.3E+02 0.0029 25.1 4.6 29 49-77 42-70 (290)
97 cd07209 Pat_hypo_Ecoli_Z1214_l 25.9 2.1E+02 0.0045 22.8 5.7 66 11-79 99-171 (215)
98 TIGR00007 phosphoribosylformim 25.6 1.6E+02 0.0035 23.5 5.0 51 11-72 169-219 (230)
99 TIGR00715 precor6x_red precorr 25.3 68 0.0015 26.8 2.8 23 124-149 208-230 (256)
100 PRK02655 psbI photosystem II r 24.0 40 0.00087 19.9 0.8 15 74-88 20-35 (38)
101 PF00404 Dockerin_1: Dockerin 23.6 56 0.0012 16.7 1.2 18 10-27 3-20 (21)
102 CHL00024 psbI photosystem II p 22.7 45 0.00098 19.5 0.8 15 74-88 20-35 (36)
103 PRK14024 phosphoribosyl isomer 22.5 1.8E+02 0.0039 23.8 4.8 29 10-38 169-197 (241)
104 PLN02580 trehalose-phosphatase 21.5 2.7E+02 0.0059 24.9 5.9 27 53-79 105-131 (384)
105 PRK13585 1-(5-phosphoribosyl)- 21.4 2.1E+02 0.0046 22.9 5.0 50 12-72 174-223 (241)
No 1
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.97 E-value=7.6e-31 Score=214.15 Aligned_cols=151 Identities=42% Similarity=0.626 Sum_probs=132.2
Q ss_pred CCCCcceeeccCCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecC
Q 029969 1 MSPFSCGWSTSGGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSH 80 (184)
Q Consensus 1 ~~~~~~~~~~~~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~ 80 (184)
++|++|. +++|++.....+.+..+|+.|++||++||.+.++..++.++|+|.++.+||+.|++|+++|+|||||||+.
T Consensus 100 ~~P~s~~--~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l~pd~v~f~tdVdGVy~~ 177 (252)
T COG1608 100 VVPISFS--TFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDR 177 (252)
T ss_pred ccCccee--ecCCceeechHHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHHHHHhCCCEEEEEecCCceecC
Confidence 3788885 66899988889999999999999999999999766689999999999999999999999999999999999
Q ss_pred CC-cCCCceeeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hh
Q 029969 81 PP-TEPNAVLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KA 158 (184)
Q Consensus 81 dp-~~p~~~li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~ 158 (184)
+| +.|+...++++.... .+. ++.+.|+||||..|++++.++.+.+.+|+++||++++++ ++
T Consensus 178 ~p~~~p~~~~l~~i~~~~---------~~~--------gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni~~~ 240 (252)
T COG1608 178 DPGKVPDARLLSEIEGRV---------ALG--------GSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIYRA 240 (252)
T ss_pred CCCcCccccchhhhhhhh---------hhc--------CcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHHHHHH
Confidence 99 588888777775532 122 224579999999999999999999999999999999998 78
Q ss_pred hcCCcccCCCCCccccEEEc
Q 029969 159 LSGELREKIPDDWLGTVIHF 178 (184)
Q Consensus 159 l~Ge~~~~~~~~~~GT~i~~ 178 (184)
|+|+.+ ||+|.+
T Consensus 241 l~G~~v--------GT~I~~ 252 (252)
T COG1608 241 LRGENV--------GTRIDG 252 (252)
T ss_pred hcCCCC--------ceEecC
Confidence 999984 999864
No 2
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.97 E-value=6.3e-30 Score=212.42 Aligned_cols=153 Identities=45% Similarity=0.720 Sum_probs=129.5
Q ss_pred CCCCcceeeccCCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecC
Q 029969 1 MSPFSCGWSTSGGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSH 80 (184)
Q Consensus 1 ~~~~~~~~~~~~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~ 80 (184)
++|+++ +.++.|++..++.+.|+++|++|+|||++|+.+.++..+.+++++|++|+++|.+|+|++|+|+|||+|||++
T Consensus 99 l~~~~~-~~~~~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~ 177 (252)
T cd04241 99 VPPSSF-FVTENGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDK 177 (252)
T ss_pred EChHHe-EEecCCeeeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHHHHHHcCCCEEEEEeCCCeeECC
Confidence 355666 6677899999999999999999999999998766554567899999999999999999999999999999999
Q ss_pred CCcCCCceeeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhh
Q 029969 81 PPTEPNAVLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KAL 159 (184)
Q Consensus 81 dp~~p~~~li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l 159 (184)
|| |++++|++|+.+++ +. +.... ++.+.+++|||.+|+++|..++++|++++|++++.++.+ +++
T Consensus 178 ~P--~~~~~i~~i~~~~~------~~-~~~~~-----~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~~g~~~~~l~~~l 243 (252)
T cd04241 178 PP--PDAKLIPEIDVGSL------ED-ILAAL-----GSAGTDVTGGMAGKIEELLELARRGIEVYIFNGDKPENLYRAL 243 (252)
T ss_pred CC--CCCeEcceeCccch------HH-HHHhc-----CcCCccccCCHHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHH
Confidence 99 78999999998663 12 22110 012468999999999999999999999999999998876 789
Q ss_pred cCCcccCCCCCccccEE
Q 029969 160 SGELREKIPDDWLGTVI 176 (184)
Q Consensus 160 ~Ge~~~~~~~~~~GT~i 176 (184)
+|+. .||+|
T Consensus 244 ~g~~--------~GT~i 252 (252)
T cd04241 244 LGNF--------IGTRI 252 (252)
T ss_pred cCCC--------CceEC
Confidence 9986 39975
No 3
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.95 E-value=3.4e-27 Score=199.83 Aligned_cols=139 Identities=27% Similarity=0.425 Sum_probs=115.5
Q ss_pred eechHHHHHHHHcCCeeEEc-CceEeeCC------Cc-eeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCce
Q 029969 17 VADLSVVAKTIKSGFVPVLH-GDAVLDDV------QG-CAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAV 88 (184)
Q Consensus 17 ~~~~~~I~~lL~~G~IPIv~-gd~~~~e~------~~-~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~ 88 (184)
....+.|+.||+.|+|||++ +|++++.. .+ ..++|+|++|+++|..++||+|+|+|||||||++||++|+++
T Consensus 137 ~~~~~~l~~lL~~g~iPVi~~nD~v~~~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~a~ 216 (284)
T cd04256 137 RNLNGTLEELLRLNIIPIINTNDAVSPPPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAK 216 (284)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCcccccccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCCCCCCe
Confidence 35578999999999999999 58886421 12 246899999999999999999999999999999999889999
Q ss_pred eeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCC
Q 029969 89 LLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKI 167 (184)
Q Consensus 89 li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~ 167 (184)
+|++++..+. ..+.. ...+.++||||.+||++|..+.+.|++++|++|+.++.+ ++|+|+.
T Consensus 217 ~I~~i~~~~~----------~~~~~----~~~s~~gtGGM~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~---- 278 (284)
T cd04256 217 LIHTFYPGDQ----------QSITF----GTKSRVGTGGMEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKK---- 278 (284)
T ss_pred EcccccHhHH----------HHhhc----ccccCcccCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCC----
Confidence 9999987542 22211 113457899999999999999999999999999999987 7899987
Q ss_pred CCCccccEEE
Q 029969 168 PDDWLGTVIH 177 (184)
Q Consensus 168 ~~~~~GT~i~ 177 (184)
.||+|.
T Consensus 279 ----~GT~~~ 284 (284)
T cd04256 279 ----VGTFFT 284 (284)
T ss_pred ----CCEEeC
Confidence 399983
No 4
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.94 E-value=1.2e-26 Score=194.76 Aligned_cols=143 Identities=24% Similarity=0.396 Sum_probs=117.5
Q ss_pred eechHHHHHHHHcCCeeEEc-CceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeee
Q 029969 17 VADLSVVAKTIKSGFVPVLH-GDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIA 94 (184)
Q Consensus 17 ~~~~~~I~~lL~~G~IPIv~-gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~ 94 (184)
....+.|+.||+.|+|||++ +|.+.....+..+.++|++|++||.+++|++|+|+|||||||++|| .+|++++|++|+
T Consensus 120 ~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~ 199 (266)
T PRK12314 120 ANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVT 199 (266)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEec
Confidence 34478999999999999999 5777643334557889999999999999999999999999999999 679999999997
Q ss_pred ccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCccc
Q 029969 95 VGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLG 173 (184)
Q Consensus 95 ~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~G 173 (184)
..+. ..++... ...+.++||||.+|+++|..|.+.|++++|++++.++.+ ++|+|+. .|
T Consensus 200 ~~~~-------~~~~~~~-----~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g~~--------~G 259 (266)
T PRK12314 200 EITE-------EILALAG-----GAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGES--------IG 259 (266)
T ss_pred CCCH-------HHHHHhc-----cCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcCCC--------Cc
Confidence 5221 1122211 113457999999999999999999999999999999987 7899876 49
Q ss_pred cEEEcC
Q 029969 174 TVIHFS 179 (184)
Q Consensus 174 T~i~~~ 179 (184)
|+|.|.
T Consensus 260 T~i~~~ 265 (266)
T PRK12314 260 TLFAPK 265 (266)
T ss_pred eEEccC
Confidence 999874
No 5
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=197.94 Aligned_cols=141 Identities=27% Similarity=0.458 Sum_probs=124.3
Q ss_pred hHHHHHHHHcCCeeEEc-CceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeeccC
Q 029969 20 LSVVAKTIKSGFVPVLH-GDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAVGE 97 (184)
Q Consensus 20 ~~~I~~lL~~G~IPIv~-gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~~e 97 (184)
...|..||+.|.|||++ +|.+..++ ..+.++|++++..|..++||.|++|||+||+|++|| .||++++|++++.-
T Consensus 120 r~Tl~~Ll~~gvVPIINENDtva~~E--ikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~i- 196 (369)
T COG0263 120 RNTLSALLELGVVPIINENDTVATEE--IKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEI- 196 (369)
T ss_pred HHHHHHHHHCCceeeecCCCceeeee--eeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhccc-
Confidence 57899999999999999 99998432 258999999999999999999999999999999999 99999999999763
Q ss_pred CCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCccccEE
Q 029969 98 DGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLGTVI 176 (184)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~GT~i 176 (184)
.++++.++. ++.+...||||.+|++||..|.++|++++|.+|+.++.+ ++++|+.. ||+|
T Consensus 197 -------t~ei~~~ag----gsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~~~~~~--------GT~F 257 (369)
T COG0263 197 -------TPEIEAMAG----GSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAV--------GTLF 257 (369)
T ss_pred -------CHHHHHHhc----CCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcchHHHHHhCCCC--------ccEE
Confidence 456888754 246779999999999999999999999999999999965 89999874 9999
Q ss_pred EcCccc
Q 029969 177 HFSREE 182 (184)
Q Consensus 177 ~~~~~~ 182 (184)
.|..++
T Consensus 258 ~~~~~~ 263 (369)
T COG0263 258 EPQAKE 263 (369)
T ss_pred ecCCcc
Confidence 976544
No 6
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.94 E-value=2.4e-26 Score=193.01 Aligned_cols=134 Identities=28% Similarity=0.435 Sum_probs=115.4
Q ss_pred CCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceeeee
Q 029969 13 GNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLLRE 92 (184)
Q Consensus 13 g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li~~ 92 (184)
|++.+++.+.|+.+|++|+|||++|.++. +.+..+++++|.+|+++|.+|+|++|+|+|||+|||+++|. +++++++
T Consensus 132 g~v~~v~~~~i~~ll~~g~iPVi~~~~~~-~~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~--~~~~i~~ 208 (268)
T PRK14058 132 GKIEEVNTDLLKLLLKAGYLPVVAPPALS-EEGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPD--EGSLIER 208 (268)
T ss_pred eEEEEECHHHHHHHHHCCCEEEEeCceEC-CCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCC--CCcCccC
Confidence 78999999999999999999999997664 33346789999999999999999999999999999998774 3679999
Q ss_pred eeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCC-eEEEEcCCCcChh-hhhcCCcccCCCCC
Q 029969 93 IAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGI-DVYIVKAASSHSV-KALSGELREKIPDD 170 (184)
Q Consensus 93 I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi-~v~I~~g~~~~~l-~~l~Ge~~~~~~~~ 170 (184)
++.+| ++++ ..+++|||.+|+++|.+++++|+ +++|++++.++.+ ++|+|
T Consensus 209 i~~~e----------~~~l---------~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G--------- 260 (268)
T PRK14058 209 ITPEE----------AEEL---------SKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAG--------- 260 (268)
T ss_pred cCHHH----------HHHH---------hhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCC---------
Confidence 98765 2332 13689999999999999999999 6999999999986 78877
Q ss_pred ccccEEEc
Q 029969 171 WLGTVIHF 178 (184)
Q Consensus 171 ~~GT~i~~ 178 (184)
.||+|.+
T Consensus 261 -~GT~I~~ 267 (268)
T PRK14058 261 -EGTVIVN 267 (268)
T ss_pred -CceEEec
Confidence 2899976
No 7
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.94 E-value=6.1e-26 Score=188.85 Aligned_cols=134 Identities=26% Similarity=0.474 Sum_probs=113.7
Q ss_pred hHHHHHHHHcCCeeEEc-CceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeee--c
Q 029969 20 LSVVAKTIKSGFVPVLH-GDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIA--V 95 (184)
Q Consensus 20 ~~~I~~lL~~G~IPIv~-gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~--~ 95 (184)
.+.|+.+|+.|+|||++ +|.+.+.. ..+.++|++|++||.+|+||+|+|+|||||||++|| .+|++++|++|+ .
T Consensus 113 ~~~i~~ll~~g~iPVv~~~d~v~~~~--~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~ 190 (251)
T cd04242 113 RNTLETLLELGVIPIINENDTVATEE--IRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEIT 190 (251)
T ss_pred HHHHHHHHHCCCEEEEcCCCCeeeec--cccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCCh
Confidence 58899999999999999 58776522 247799999999999999999999999999999999 678999999998 4
Q ss_pred cCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCcccc
Q 029969 96 GEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLGT 174 (184)
Q Consensus 96 ~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~GT 174 (184)
++ +..+.. +..+.+++|||.+|++++..++++|++++|++++.++.+ ++|+|+. .||
T Consensus 191 ~e----------~~~~~~----~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~~i~~~l~g~~--------~GT 248 (251)
T cd04242 191 DE----------IEAMAG----GSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEA--------VGT 248 (251)
T ss_pred HH----------HHHHhc----ccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHcCCC--------CCe
Confidence 43 333311 113578999999999999999999999999999999987 7899987 499
Q ss_pred EEE
Q 029969 175 VIH 177 (184)
Q Consensus 175 ~i~ 177 (184)
+|.
T Consensus 249 ~i~ 251 (251)
T cd04242 249 LFL 251 (251)
T ss_pred EeC
Confidence 873
No 8
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.93 E-value=5.1e-26 Score=190.84 Aligned_cols=138 Identities=23% Similarity=0.346 Sum_probs=110.1
Q ss_pred chHHHHHHHHcCCeeEEcC-ceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCcee---eeee
Q 029969 19 DLSVVAKTIKSGFVPVLHG-DAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVL---LREI 93 (184)
Q Consensus 19 ~~~~I~~lL~~G~IPIv~g-d~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~l---i~~I 93 (184)
..+.|+.||+.|+|||+++ |.+... ...+.++|++|+++|..++||+|+|+|||||||++|| ++|++++ ++++
T Consensus 117 ~~~~l~~lL~~g~VPIinend~~~~~--e~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i 194 (264)
T PTZ00489 117 AHNTIEVLISHKVIPIINENDATALH--ELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHEL 194 (264)
T ss_pred HHHHHHHHHHCCCEEEECCCCCcccc--eeEeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccC
Confidence 3788999999999999994 555421 2346699999999999999999999999999999999 7788887 4455
Q ss_pred eccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCcc
Q 029969 94 AVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWL 172 (184)
Q Consensus 94 ~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~ 172 (184)
+.++ +.... ...+.++||||.+|+++|..+.+.|++++|++|+.++.+ +++.|+.. . .
T Consensus 195 ~~~~----------~~~~~-----~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~i~~~l~g~~~-----~-~ 253 (264)
T PTZ00489 195 SPDD----------LVAEA-----TPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFHLEKARDFLIGGSH-----E-I 253 (264)
T ss_pred CHHH----------HHHhc-----CcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHcCCCC-----C-C
Confidence 5432 21111 113568999999999999999999999999999999987 78877521 0 3
Q ss_pred ccEEEcC
Q 029969 173 GTVIHFS 179 (184)
Q Consensus 173 GT~i~~~ 179 (184)
||+|.|.
T Consensus 254 GT~~~~~ 260 (264)
T PTZ00489 254 GTLFYPR 260 (264)
T ss_pred ceEEeec
Confidence 9999874
No 9
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.93 E-value=1.8e-25 Score=195.24 Aligned_cols=142 Identities=25% Similarity=0.419 Sum_probs=119.0
Q ss_pred hHHHHHHHHcCCeeEEc-CceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeeccC
Q 029969 20 LSVVAKTIKSGFVPVLH-GDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAVGE 97 (184)
Q Consensus 20 ~~~I~~lL~~G~IPIv~-gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~~e 97 (184)
...|+.||+.|+|||++ ||.+.++ +..+.++|++|+++|..++||.|+|+|||||||++|| .+|++++|++|+..+
T Consensus 118 ~~~l~~LL~~g~IPIinenD~v~~~--el~~GdnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~ 195 (368)
T PRK13402 118 RNTINVLLERGILPIINENDAVTTD--RLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEIN 195 (368)
T ss_pred HHHHHHHHHCCcEEEEeCCCcEeec--ccccCChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCc
Confidence 37899999999999999 8888753 2347799999999999999999999999999999999 789999999997622
Q ss_pred CCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCccccEE
Q 029969 98 DGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLGTVI 176 (184)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~GT~i 176 (184)
.++..+... ..+...||||.+|+++|..|.++|++++|++++.++.+ ++++|+. .||+|
T Consensus 196 --------~e~~~l~~~----~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~--------~GT~i 255 (368)
T PRK13402 196 --------AEIYAMAGG----AGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLKGQN--------PGTYF 255 (368)
T ss_pred --------HHHHHHhcc----cccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHhcCCC--------CceEE
Confidence 234444221 12457899999999999999999999999999999886 7899987 39999
Q ss_pred EcCcccc
Q 029969 177 HFSREEV 183 (184)
Q Consensus 177 ~~~~~~~ 183 (184)
.+.+.++
T Consensus 256 ~~~~~~~ 262 (368)
T PRK13402 256 TPEEKPM 262 (368)
T ss_pred ecCCCCc
Confidence 9876543
No 10
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.93 E-value=1.1e-25 Score=190.52 Aligned_cols=139 Identities=19% Similarity=0.395 Sum_probs=116.1
Q ss_pred cCCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceee
Q 029969 11 SGGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLL 90 (184)
Q Consensus 11 ~~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li 90 (184)
..|+++++|.+.|+.+|++|+|||+++.++ ++.+..+++|+|++|+++|..|+|++|+|+|||+|||++ +.+| ++++
T Consensus 142 ~~G~i~~v~~~~i~~ll~~g~iPVi~~~~~-~~~g~~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~-~~d~-~~~i 218 (284)
T CHL00202 142 LVGEIQQVDPQLIDMLLEKNYIPVIASVAA-DHDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILAD-INDP-NSLI 218 (284)
T ss_pred cceeEEecCHHHHHHHHHCCCEEEECCCcc-CCCCcEEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCC-CCCC-CCcc
Confidence 459999999999999999999999998544 333456799999999999999999999999999999974 3445 4799
Q ss_pred eeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCe-EEEEcCCCcCh-h-hhhcCCcccCC
Q 029969 91 REIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGID-VYIVKAASSHS-V-KALSGELREKI 167 (184)
Q Consensus 91 ~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~-v~I~~g~~~~~-l-~~l~Ge~~~~~ 167 (184)
++++.+|+ +++. ...+++|||.+||++|.+++++|++ +||++|+.++. + ++++++.
T Consensus 219 ~~i~~~e~----------~~l~-------~~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g---- 277 (284)
T CHL00202 219 STLNIKEA----------RNLA-------STGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKG---- 277 (284)
T ss_pred ccccHHHH----------HHHH-------hcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCC----
Confidence 99987653 3321 1247999999999999999999987 89999999986 4 6888776
Q ss_pred CCCccccEEE
Q 029969 168 PDDWLGTVIH 177 (184)
Q Consensus 168 ~~~~~GT~i~ 177 (184)
.||.|.
T Consensus 278 ----~GT~i~ 283 (284)
T CHL00202 278 ----IGSMLV 283 (284)
T ss_pred ----CceEEe
Confidence 399985
No 11
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.93 E-value=1.5e-25 Score=189.32 Aligned_cols=137 Identities=23% Similarity=0.379 Sum_probs=117.7
Q ss_pred CCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceeee
Q 029969 12 GGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLLR 91 (184)
Q Consensus 12 ~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li~ 91 (184)
.|+++.+|.+.|+.+|++|.|||+++.++. +.++.+++++|.+|++||..|+|++|+|+|||+|||++ ++++++
T Consensus 144 ~g~i~~i~~~~l~~ll~~g~vpVv~~~~~~-~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~-----~~~~i~ 217 (283)
T PRK00942 144 VGEVTPVNPALLEALLEAGYIPVISPIGVG-EDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDD-----KGQLIS 217 (283)
T ss_pred ccceEEECHHHHHHHHHCCCEEEEcCcEEC-CCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccC-----CCcccc
Confidence 388999999999999999999999986553 33457899999999999999999999999999999986 578999
Q ss_pred eeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCC-eEEEEcCCCcCh-h-hhhcCCcccCCC
Q 029969 92 EIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGI-DVYIVKAASSHS-V-KALSGELREKIP 168 (184)
Q Consensus 92 ~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi-~v~I~~g~~~~~-l-~~l~Ge~~~~~~ 168 (184)
+|+.+|+ .++. ...+++|||.+|+++|.++++.|+ +|+|++++.+++ + ++++|+.
T Consensus 218 ~i~~~e~----------~~~~-------~~~~~tggm~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~----- 275 (283)
T PRK00942 218 ELTASEA----------EELI-------EDGVITGGMIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEG----- 275 (283)
T ss_pred cCCHHHH----------HHHH-------HcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCC-----
Confidence 9998763 2221 125799999999999999999997 599999999997 6 6888887
Q ss_pred CCccccEEEcC
Q 029969 169 DDWLGTVIHFS 179 (184)
Q Consensus 169 ~~~~GT~i~~~ 179 (184)
.||.|.++
T Consensus 276 ---~GT~i~~~ 283 (283)
T PRK00942 276 ---IGTMIVPD 283 (283)
T ss_pred ---cceEEecC
Confidence 49999874
No 12
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.93 E-value=2.4e-25 Score=194.89 Aligned_cols=141 Identities=27% Similarity=0.441 Sum_probs=118.5
Q ss_pred hHHHHHHHHcCCeeEEc-CceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeeccC
Q 029969 20 LSVVAKTIKSGFVPVLH-GDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAVGE 97 (184)
Q Consensus 20 ~~~I~~lL~~G~IPIv~-gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~~e 97 (184)
.+.|+.||+.|+|||++ +|.+.... ..++++|++|+++|.+++||+|+|+|||||||++|| .+|++++|++|+..+
T Consensus 122 ~~~i~~Ll~~g~IPVi~~nd~v~~~~--l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~ 199 (372)
T PRK05429 122 RNTLRTLLELGVVPIINENDTVATDE--IKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEIT 199 (372)
T ss_pred HHHHHHHHHCCCEEEEcCCCccceec--ccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCC
Confidence 47899999999999999 78876422 236899999999999999999999999999999999 679999999997632
Q ss_pred CCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCccccEE
Q 029969 98 DGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLGTVI 176 (184)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~GT~i 176 (184)
.+++.+.. ++.+.+++|||.+|+++|..+++.|++++|+|++.++.+ ++|+|+. .||+|
T Consensus 200 --------~e~~~~~~----~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~--------~GT~i 259 (372)
T PRK05429 200 --------DELEAMAG----GAGSGLGTGGMATKLEAARIATRAGIPVVIASGREPDVLLRLLAGEA--------VGTLF 259 (372)
T ss_pred --------HHHHHHhc----CCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHhcCCC--------CCEEE
Confidence 22444421 113568999999999999999999999999999999986 7899987 39999
Q ss_pred EcCccc
Q 029969 177 HFSREE 182 (184)
Q Consensus 177 ~~~~~~ 182 (184)
.+.+.+
T Consensus 260 ~~~~~~ 265 (372)
T PRK05429 260 LPQEKP 265 (372)
T ss_pred eeCCcc
Confidence 987654
No 13
>PLN02512 acetylglutamate kinase
Probab=99.93 E-value=2.5e-25 Score=190.42 Aligned_cols=140 Identities=23% Similarity=0.341 Sum_probs=117.1
Q ss_pred cCCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceee
Q 029969 11 SGGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLL 90 (184)
Q Consensus 11 ~~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li 90 (184)
..|++.+++.+.|+.+|++|+|||++|.++. +.+..+++++|.+|++||.+|+|++|+|+|||+|||++++. ++++|
T Consensus 167 ~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d-~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~~--~~~lI 243 (309)
T PLN02512 167 FVGEVTRVDPTVLRPLVDDGHIPVIATVAAD-EDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKDD--PGSLV 243 (309)
T ss_pred ccceeeecCHHHHHHHHhCCCEEEEeCceEC-CCCCEeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCCCC--CcCCC
Confidence 4589999999999999999999999997653 33446788999999999999999999999999999986432 37899
Q ss_pred eeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCe-EEEEcCCCcChh--hhhcCCcccCC
Q 029969 91 REIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGID-VYIVKAASSHSV--KALSGELREKI 167 (184)
Q Consensus 91 ~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~-v~I~~g~~~~~l--~~l~Ge~~~~~ 167 (184)
++|+.+| ++++. ...+++|||.+||++|.++++.|++ |+|++++.++.+ ++++++.
T Consensus 244 ~~i~~~e----------~~~l~-------~~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~---- 302 (309)
T PLN02512 244 KELDIKG----------VRKLI-------ADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEG---- 302 (309)
T ss_pred cccCHHH----------HHHHH-------hCCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCC----
Confidence 9998865 33321 1358999999999999999999996 999999999874 5787766
Q ss_pred CCCccccEEEc
Q 029969 168 PDDWLGTVIHF 178 (184)
Q Consensus 168 ~~~~~GT~i~~ 178 (184)
.||+|.+
T Consensus 303 ----~GT~I~~ 309 (309)
T PLN02512 303 ----AGTMITG 309 (309)
T ss_pred ----CeeEEeC
Confidence 4999874
No 14
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.93 E-value=2.2e-25 Score=188.15 Aligned_cols=137 Identities=25% Similarity=0.437 Sum_probs=115.8
Q ss_pred CCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceeee
Q 029969 12 GGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLLR 91 (184)
Q Consensus 12 ~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li~ 91 (184)
.|++..++.+.|+.+|++|+|||++|.++ ++....+++++|.+|+++|.+|+|++|+|+|||+|||+++|+ | +++|+
T Consensus 140 ~g~i~~i~~~~i~~ll~~g~IPVi~~~~~-~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~-~-~~~i~ 216 (279)
T cd04250 140 VGEVTEVNPELLETLLEAGYIPVIAPVGV-GEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPND-P-GSLIS 216 (279)
T ss_pred ccceEEEcHHHHHHHHHCCCeEEEcCCcc-CCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCC-C-ccccc
Confidence 48899999999999999999999998544 333456789999999999999999999999999999998874 3 68999
Q ss_pred eeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCe-EEEEcCCCcCh-h-hhhcCCcccCCC
Q 029969 92 EIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGID-VYIVKAASSHS-V-KALSGELREKIP 168 (184)
Q Consensus 92 ~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~-v~I~~g~~~~~-l-~~l~Ge~~~~~~ 168 (184)
+++.+|+ +++. ...+++|||.+|+++|.+++++|++ |+|++++.++. + ++++++.
T Consensus 217 ~i~~~e~----------~~l~-------~~~~~tGgm~~Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~----- 274 (279)
T cd04250 217 EISLKEA----------EELI-------ADGIISGGMIPKVEACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEG----- 274 (279)
T ss_pred cCCHHHH----------HHHH-------HcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCC-----
Confidence 9998663 3331 1258999999999999999999986 99999999985 4 6788776
Q ss_pred CCccccEE
Q 029969 169 DDWLGTVI 176 (184)
Q Consensus 169 ~~~~GT~i 176 (184)
.||.|
T Consensus 275 ---~GT~i 279 (279)
T cd04250 275 ---IGTMI 279 (279)
T ss_pred ---CccCC
Confidence 39975
No 15
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.93 E-value=4.3e-25 Score=192.70 Aligned_cols=140 Identities=26% Similarity=0.431 Sum_probs=117.5
Q ss_pred HHHHHHHHcCCeeEEc-CceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeeccCC
Q 029969 21 SVVAKTIKSGFVPVLH-GDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAVGED 98 (184)
Q Consensus 21 ~~I~~lL~~G~IPIv~-gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~~e~ 98 (184)
..|..||++|+|||++ +|.+..+. ..+.++|++|+++|..++||+|+|+|||||||++|| .+|++++|++|+..+
T Consensus 115 ~~i~~Ll~~g~iPVi~end~v~~~~--l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~- 191 (363)
T TIGR01027 115 NTLEALLELGVVPIINENDTVATEE--IKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEIT- 191 (363)
T ss_pred HHHHHHHhCCCEEEEeCCCceeeee--cCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCc-
Confidence 7899999999999999 88886422 236799999999999999999999999999999999 789999999997643
Q ss_pred CCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCccccEEE
Q 029969 99 GSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLGTVIH 177 (184)
Q Consensus 99 ~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~GT~i~ 177 (184)
.++..+.. ++.+.+++|||.+|+++|..|.+.|++++|++++.++.+ ++|+|+. .||+|.
T Consensus 192 -------~~~~~i~~----~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~--------~GT~i~ 252 (363)
T TIGR01027 192 -------DLLLGVAG----DSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPEKIADALEGAP--------VGTLFH 252 (363)
T ss_pred -------HHHHHhhc----CCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCccHHHHHhcCCC--------CcEEEe
Confidence 22333321 112458999999999999999999999999999999886 7899987 399999
Q ss_pred cCccc
Q 029969 178 FSREE 182 (184)
Q Consensus 178 ~~~~~ 182 (184)
+.+.+
T Consensus 253 ~~~~~ 257 (363)
T TIGR01027 253 AQARR 257 (363)
T ss_pred eCCCC
Confidence 86554
No 16
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.93 E-value=3.1e-25 Score=185.04 Aligned_cols=142 Identities=25% Similarity=0.401 Sum_probs=120.6
Q ss_pred cceeeccCCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcC
Q 029969 5 SCGWSTSGGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTE 84 (184)
Q Consensus 5 ~~~~~~~~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~ 84 (184)
++||. |+++++|++.|+.++++|+|||+++.+++. ....+|+++|++|..+|.+|+|++|||||||+|||++.+ +
T Consensus 121 d~g~v---G~i~~Vn~~~i~~ll~~~~IpViapia~~~-~G~~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~-~ 195 (265)
T COG0548 121 DLGYV---GEIRKVNPELIERLLDNGAIPVIAPIAVDE-DGETLNVNADTAAGALAAALKAEKLILLTDVPGVLDDKG-D 195 (265)
T ss_pred cccee---eeEEEECHHHHHHHHhCCCceEEecceECC-CCcEEeeCHHHHHHHHHHHcCCCeEEEEeCCcccccCCC-C
Confidence 46777 999999999999999999999999998863 345789999999999999999999999999999998632 3
Q ss_pred CCceeeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCe-EEEEcCCCcChh--hhhcC
Q 029969 85 PNAVLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGID-VYIVKAASSHSV--KALSG 161 (184)
Q Consensus 85 p~~~li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~-v~I~~g~~~~~l--~~l~G 161 (184)
| +++++++.+++ +++. ....++|||.+|+++|.+|++.|++ +||+|++.++.+ +.|++
T Consensus 196 ~--s~i~~~~~~~~----------~~li-------~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~~~~ll~eLFt~ 256 (265)
T COG0548 196 P--SLISELDAEEA----------EELI-------EQGIITGGMIPKVEAALEALESGVRRVHIISGRVPHSLLLELFTR 256 (265)
T ss_pred c--eeeccCCHHHH----------HHHH-------hcCCccCccHHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHhcC
Confidence 3 58888888763 3332 1347899999999999999999996 999999999984 56787
Q ss_pred CcccCCCCCccccEEEc
Q 029969 162 ELREKIPDDWLGTVIHF 178 (184)
Q Consensus 162 e~~~~~~~~~~GT~i~~ 178 (184)
+. .||.|.+
T Consensus 257 ~g--------iGT~i~~ 265 (265)
T COG0548 257 DG--------IGTMIVR 265 (265)
T ss_pred CC--------cceEecC
Confidence 76 4999863
No 17
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.92 E-value=5.6e-25 Score=183.01 Aligned_cols=132 Identities=24% Similarity=0.335 Sum_probs=112.2
Q ss_pred CCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceeeee
Q 029969 13 GNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLLRE 92 (184)
Q Consensus 13 g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li~~ 92 (184)
|+++++|.+.|+.+|++|+|||+++.++. +.++.+++++|++|+++|..|+|+ ++|+|||+|||++| ++++++
T Consensus 119 G~v~~i~~~~l~~ll~~g~ipVi~~~g~~-~~g~~~~~~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~-----~~~i~~ 191 (252)
T cd04249 119 GKATANDPSLLNDLLKAGFLPIISSIGAD-DQGQLMNVNADQAATAIAQLLNAD-LVLLSDVSGVLDAD-----KQLISE 191 (252)
T ss_pred cceEEEcHHHHHHHHHCCCEEEECCCEEC-CCCCEeeecHHHHHHHHHHHcCCC-EEEEeCCcccCCCC-----CcCccc
Confidence 89999999999999999999999997764 335678999999999999999999 68999999999863 478999
Q ss_pred eeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCC-CeEEEEcCCCcChh-hhhcCCcccCCCCC
Q 029969 93 IAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLG-IDVYIVKAASSHSV-KALSGELREKIPDD 170 (184)
Q Consensus 93 I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~g-i~v~I~~g~~~~~l-~~l~Ge~~~~~~~~ 170 (184)
++..|+ +.+. ...+++|||.+|+++|..+++.+ ++++|++++.++.+ ++|+|+.
T Consensus 192 i~~~e~----------~~~~-------~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~------- 247 (252)
T cd04249 192 LNAKQA----------AELI-------EQGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPEQLTALLAGEP------- 247 (252)
T ss_pred cCHHHH----------HHHH-------hcCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCccHHHHHHcCCC-------
Confidence 987653 2221 12479999999999999998876 57999999988886 7899887
Q ss_pred ccccEE
Q 029969 171 WLGTVI 176 (184)
Q Consensus 171 ~~GT~i 176 (184)
.||+|
T Consensus 248 -~GT~I 252 (252)
T cd04249 248 -VGTKI 252 (252)
T ss_pred -CCcCC
Confidence 39975
No 18
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.92 E-value=7.6e-25 Score=182.49 Aligned_cols=135 Identities=25% Similarity=0.394 Sum_probs=113.4
Q ss_pred CCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceeee
Q 029969 12 GGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLLR 91 (184)
Q Consensus 12 ~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li~ 91 (184)
.|++..++.+.|+.+|++|+|||+++.++ ++....+++++|++|++||..|+|++|+|+|||+|||++ ++++++
T Consensus 120 ~g~i~~i~~~~l~~ll~~g~ipVv~~~~~-~~~g~~~~~~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~-----~~~~i~ 193 (256)
T cd04238 120 VGEVTEVNPELLETLLEAGYIPVIAPIAV-DEDGETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDD-----PGSLIS 193 (256)
T ss_pred ccceEEECHHHHHHHHHCCCEEEECCcEE-CCCCcEEEECHHHHHHHHHHHcCCCEEEEEeCCccccCC-----CCCccc
Confidence 39999999999999999999999998544 344457899999999999999999999999999999986 378999
Q ss_pred eeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCC-eEEEEcCCCcChh-hhhcCCcccCCCC
Q 029969 92 EIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGI-DVYIVKAASSHSV-KALSGELREKIPD 169 (184)
Q Consensus 92 ~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi-~v~I~~g~~~~~l-~~l~Ge~~~~~~~ 169 (184)
+|+.+|+ .++. ...+++|||.+|+++|..+++.|+ +|+|++++.++++ ++|.|+..
T Consensus 194 ~i~~~e~----------~~~~-------~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~l~~~~~----- 251 (256)
T cd04238 194 ELTPKEA----------EELI-------EDGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLELFTDEG----- 251 (256)
T ss_pred cCCHHHH----------HHHH-------HcCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHhcCCC-----
Confidence 9988653 2221 134789999999999999999987 5999999999986 78887432
Q ss_pred CccccEE
Q 029969 170 DWLGTVI 176 (184)
Q Consensus 170 ~~~GT~i 176 (184)
.||+|
T Consensus 252 --~GT~i 256 (256)
T cd04238 252 --IGTMI 256 (256)
T ss_pred --CCCCC
Confidence 49975
No 19
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.92 E-value=1.7e-24 Score=202.92 Aligned_cols=158 Identities=22% Similarity=0.322 Sum_probs=125.7
Q ss_pred CCCcceeeccCC-Ccc---eechHHHHHHHHcCCeeEEc-CceEeeCCCc-----eeeechhHHHHHHHHhcCCCEEEEe
Q 029969 2 SPFSCGWSTSGG-NLP---VADLSVVAKTIKSGFVPVLH-GDAVLDDVQG-----CAILSGDVIIRHLAAYMKPDYVVFL 71 (184)
Q Consensus 2 ~~~~~~~~~~~g-~v~---~~~~~~I~~lL~~G~IPIv~-gd~~~~e~~~-----~~~~s~D~iA~~lA~~l~Ad~li~l 71 (184)
++..+ +.|++. +-+ ....+.|+.||+.|+|||++ +|.+++...+ ..++|+|.+|+++|..++||+|+|+
T Consensus 110 ~~aQ~-Llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~Liil 188 (715)
T TIGR01092 110 TAAQI-LVTDLDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQGIFWDNDSLAALLALELKADLLILL 188 (715)
T ss_pred eeEEE-EechhhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCcccccccccccccceecchHHHHHHHHHHcCCCEEEEE
Confidence 34444 555553 222 23578999999999999999 5888743211 1389999999999999999999999
Q ss_pred ecccceecCCCcCCCceeeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCC
Q 029969 72 TDVLGVYSHPPTEPNAVLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAA 151 (184)
Q Consensus 72 tdVdGVy~~dp~~p~~~li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~ 151 (184)
|||||||++||++|++++|++++..+. . ..+. .+..+.+++|||.+||++|..+.++|++++|++++
T Consensus 189 TDVdGVy~~dP~~~~a~~I~~i~~~~~-------~--~~i~----~~~~~~~~tGGM~~Kl~aa~~a~~~gi~v~I~~g~ 255 (715)
T TIGR01092 189 SDVEGLYDGPPSDDDSKLIDTFYKEKH-------Q--GEIT----FGTKSRLGRGGMTAKVKAAVWAAYGGTPVIIASGT 255 (715)
T ss_pred eCCCeeeCCCCCCCCCeEeeeecccch-------h--hhhc----cCcccccCCCCchHHHHHHHHHHHCCCeEEEeCCC
Confidence 999999999998899999999987542 1 1111 11235688999999999999999999999999999
Q ss_pred CcChh-hhhcCCcccCCCCCccccEEEcCcc
Q 029969 152 SSHSV-KALSGELREKIPDDWLGTVIHFSRE 181 (184)
Q Consensus 152 ~~~~l-~~l~Ge~~~~~~~~~~GT~i~~~~~ 181 (184)
.++.+ ++|+|+. .||+|.+++|
T Consensus 256 ~~~~l~~~l~g~~--------~GT~~~~~~~ 278 (715)
T TIGR01092 256 APKNITKVVEGKK--------VGTLFHEDAH 278 (715)
T ss_pred CcchHHHHhcCCC--------CceEecccch
Confidence 99887 7899987 4999988765
No 20
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.91 E-value=6.1e-24 Score=177.54 Aligned_cols=123 Identities=25% Similarity=0.415 Sum_probs=107.2
Q ss_pred CCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceeeee
Q 029969 13 GNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLLRE 92 (184)
Q Consensus 13 g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li~~ 92 (184)
|+++.+|.+.|+.+|++|+|||+++.++. +.++.+|+++|.+|++||.+|+|++|+|+|||+|||++ ++++++
T Consensus 128 G~v~~v~~~~i~~ll~~g~vpVi~~~~~~-~~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~------~~~i~~ 200 (257)
T cd04251 128 GKVEKVNSDLIEALLDAGYLPVVSPVAYS-EEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYLD------GRVIER 200 (257)
T ss_pred EEEEEEcHHHHHHHHhCCCeEEEeCcEEC-CCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhheeC------CcccCc
Confidence 78999999999999999999999876553 34457899999999999999999999999999999973 789999
Q ss_pred eeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCe-EEEEcCCCcChh-hhhcC
Q 029969 93 IAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGID-VYIVKAASSHSV-KALSG 161 (184)
Q Consensus 93 I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~-v~I~~g~~~~~l-~~l~G 161 (184)
++.+|+ +++ ..+++|||.+|+++|..++++|+. +||++++.++++ ++|+|
T Consensus 201 i~~~e~----------~~l---------~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~~~l~~~l~g 252 (257)
T cd04251 201 ITVSDA----------ESL---------LEKAGGGMKRKLLAAAEAVEGGVREVVIGDARADSPISSALNG 252 (257)
T ss_pred cCHHHH----------HHH---------HhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCccHHHHHHcC
Confidence 998653 322 136999999999999999999985 999999999987 68987
No 21
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.91 E-value=1.4e-23 Score=177.41 Aligned_cols=139 Identities=20% Similarity=0.291 Sum_probs=114.1
Q ss_pred cceeeccCCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcC
Q 029969 5 SCGWSTSGGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTE 84 (184)
Q Consensus 5 ~~~~~~~~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~ 84 (184)
.+||. |++..+|.+.|+++|++|++||+.+.+... .+..+|+|+|.+|++||.+|+|++|+|+|||+|||++
T Consensus 139 ~~g~~---G~v~~v~~~~i~~lL~~g~ipv~~~~g~~~-~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~---- 210 (280)
T cd04237 139 DFGHT---GEVRRIDADAIRRQLDQGSIVLLSPLGYSP-TGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD---- 210 (280)
T ss_pred eEeee---ccEEEEcHHHHHHHHHCCCEEEECCceECC-CCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC----
Confidence 44444 999999999999999999999999877753 3456899999999999999999999999999999974
Q ss_pred CCceeeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCC-eEEEEcCCCcChh--hhhcC
Q 029969 85 PNAVLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGI-DVYIVKAASSHSV--KALSG 161 (184)
Q Consensus 85 p~~~li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi-~v~I~~g~~~~~l--~~l~G 161 (184)
+++++++++.+++ +..+. ....++|||.+|+++|.++++.|+ ++||++++.++.+ +.+..
T Consensus 211 -~~~~i~~i~~~e~------~~l~~----------~~~~~~ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~ 273 (280)
T cd04237 211 -DGELIRELTAQEA------EALLE----------TGALLTNDTARLLQAAIEACRGGVPRVHLISYAEDGALLLELFTR 273 (280)
T ss_pred -CCCccccCCHHHH------HHHHH----------cCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcC
Confidence 4789999998663 22221 122359999999999999999999 5999999999984 45655
Q ss_pred CcccCCCCCccccEE
Q 029969 162 ELREKIPDDWLGTVI 176 (184)
Q Consensus 162 e~~~~~~~~~~GT~i 176 (184)
+. .||.|
T Consensus 274 ~g--------~GT~i 280 (280)
T cd04237 274 DG--------VGTLI 280 (280)
T ss_pred CC--------CCCcC
Confidence 45 38875
No 22
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.90 E-value=1.4e-23 Score=187.12 Aligned_cols=141 Identities=19% Similarity=0.295 Sum_probs=116.1
Q ss_pred CCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceeeee
Q 029969 13 GNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLLRE 92 (184)
Q Consensus 13 g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li~~ 92 (184)
|+++.+|.+.|+.+|++|+|||+.+.++. ..++.+|+|+|++|+.||.+|+|++|+|+|||+|||++ ++++|++
T Consensus 151 G~v~~v~~~~i~~ll~~g~ipV~~~i~~~-~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~-----~~~~i~~ 224 (441)
T PRK05279 151 GEVRRIDAEAIRRQLDSGAIVLLSPLGYS-PTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDE-----DGELIRE 224 (441)
T ss_pred eeEEEEeHHHHHHHHHCCCeEEECCceEC-CCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC-----CCchhhh
Confidence 88999999999999999999999876664 33457899999999999999999999999999999964 5789999
Q ss_pred eeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCC-eEEEEcCCCcChh-hhhcCCcccCCCCC
Q 029969 93 IAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGI-DVYIVKAASSHSV-KALSGELREKIPDD 170 (184)
Q Consensus 93 I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi-~v~I~~g~~~~~l-~~l~Ge~~~~~~~~ 170 (184)
++..++ ...+... ...+++|||.+|+++|.+++++|+ ++||++++.++++ ..|.++.-
T Consensus 225 i~~~~~------~~~~~~~--------~~~~~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g------ 284 (441)
T PRK05279 225 LSPNEA------QALLEAL--------EDGDYNSGTARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDG------ 284 (441)
T ss_pred CCHHHH------HHHHhhh--------hcCCCCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCC------
Confidence 998763 1222111 145789999999999999999999 4999999999986 55544431
Q ss_pred ccccEEEcCc
Q 029969 171 WLGTVIHFSR 180 (184)
Q Consensus 171 ~~GT~i~~~~ 180 (184)
.||+|..++
T Consensus 285 -~GT~i~~~~ 293 (441)
T PRK05279 285 -IGTMIVMES 293 (441)
T ss_pred -CceEEecCc
Confidence 499999763
No 23
>PRK12686 carbamate kinase; Reviewed
Probab=99.90 E-value=3.5e-23 Score=176.79 Aligned_cols=139 Identities=24% Similarity=0.398 Sum_probs=109.5
Q ss_pred eeeccCCCcce------echHHHHHHHHcCCeeEEcCc---eEeeCCC---ce-eeechhHHHHHHHHhcCCCEEEEeec
Q 029969 7 GWSTSGGNLPV------ADLSVVAKTIKSGFVPVLHGD---AVLDDVQ---GC-AILSGDVIIRHLAAYMKPDYVVFLTD 73 (184)
Q Consensus 7 ~~~~~~g~v~~------~~~~~I~~lL~~G~IPIv~gd---~~~~e~~---~~-~~~s~D~iA~~lA~~l~Ad~li~ltd 73 (184)
||+ +.|.+ ++.+.|+.||++|+|||.+|+ .+..+.+ +. .++|+|.+|++||..|+||+||||||
T Consensus 157 G~r---rvV~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTD 233 (312)
T PRK12686 157 GYR---RVVPSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTG 233 (312)
T ss_pred CeE---EeeCCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeC
Confidence 555 55666 999999999999999998855 3432222 22 37899999999999999999999999
Q ss_pred ccceecCCCcCCCceeeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHC--CCeEEEEcCC
Q 029969 74 VLGVYSHPPTEPNAVLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKL--GIDVYIVKAA 151 (184)
Q Consensus 74 VdGVy~~dp~~p~~~li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~--gi~v~I~~g~ 151 (184)
|+|||++ |++|++++|++++..+ ++.+.. .+.+.+|||.+|+++|..+.+. |.+++|.+
T Consensus 234 VdGVy~~-~~~p~ak~I~~I~~~e----------~~~li~------~g~~~tGGM~pKveAA~~av~~g~g~~viI~~-- 294 (312)
T PRK12686 234 VENVFIN-FNKPNQQKLDDITVAE----------AKQYIA------EGQFAPGSMLPKVEAAIDFVESGEGKKAIITS-- 294 (312)
T ss_pred chhhccC-CCCCCCeECCccCHHH----------HHHHhh------CCCccCCCcHHHHHHHHHHHHhCCCCEEEEeC--
Confidence 9999984 6668899999999866 333321 2457889999999999999976 45688886
Q ss_pred CcChh-hhhcCCcccCCCCCccccEEE
Q 029969 152 SSHSV-KALSGELREKIPDDWLGTVIH 177 (184)
Q Consensus 152 ~~~~l-~~l~Ge~~~~~~~~~~GT~i~ 177 (184)
++.+ ++|+|+. ||+|.
T Consensus 295 -~~~i~~aL~G~~---------GT~I~ 311 (312)
T PRK12686 295 -LEQAKEALAGNA---------GTHIT 311 (312)
T ss_pred -chHHHHHhCCCC---------CeEEe
Confidence 4554 7898873 99985
No 24
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=99.90 E-value=1.5e-23 Score=172.50 Aligned_cols=136 Identities=29% Similarity=0.389 Sum_probs=116.4
Q ss_pred CCCcceechHHHHHHHHcCCeeEEcCceEeeC--CCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCce
Q 029969 12 GGNLPVADLSVVAKTIKSGFVPVLHGDAVLDD--VQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAV 88 (184)
Q Consensus 12 ~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e--~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~ 88 (184)
.|.+..++.+.|+.+|++|.|||++|+...+. .....++++|.+|+.+|..|+|++|+|+|||+|||++|| ++|+++
T Consensus 110 ~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~ 189 (248)
T cd02115 110 VGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAK 189 (248)
T ss_pred cccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCe
Confidence 37888999999999999999999999877542 334578999999999999999999999999999999999 778999
Q ss_pred eeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChhhhhcCCcccCCC
Q 029969 89 LLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSVKALSGELREKIP 168 (184)
Q Consensus 89 li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~l~Ge~~~~~~ 168 (184)
+|++|+++|+ .++. ..|+|..|++++..+++.|++++|++++.++.+++|.++.
T Consensus 190 ~i~~i~~~e~----------~~l~-----------~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~----- 243 (248)
T cd02115 190 LLSELTYEEA----------AELA-----------YAGAMVLKPKAADPAARAGIPVRIANTENPGALALFTPDG----- 243 (248)
T ss_pred ECCcCCHHHH----------HHHH-----------HcCCCccCHHHHHHHHHcCCcEEEEeCCCcccccccCCCC-----
Confidence 9999998653 2221 2467999999999999999999999999888776677766
Q ss_pred CCccccEE
Q 029969 169 DDWLGTVI 176 (184)
Q Consensus 169 ~~~~GT~i 176 (184)
.||+|
T Consensus 244 ---~GT~I 248 (248)
T cd02115 244 ---GGTLI 248 (248)
T ss_pred ---CCCCC
Confidence 49975
No 25
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.90 E-value=3.7e-23 Score=177.46 Aligned_cols=132 Identities=26% Similarity=0.387 Sum_probs=106.2
Q ss_pred echHHHHHHHHcCCeeEEcCce---EeeCCCce----eeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceee
Q 029969 18 ADLSVVAKTIKSGFVPVLHGDA---VLDDVQGC----AILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLL 90 (184)
Q Consensus 18 ~~~~~I~~lL~~G~IPIv~gd~---~~~e~~~~----~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li 90 (184)
++.+.|+.||++|+|||++|++ +..+.+.. .++|+|++|+++|..|+||+|+|+|||+|||+++| +|++++|
T Consensus 173 v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~-~~~a~~i 251 (314)
T PRK12353 173 VEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFG-KPNQKKL 251 (314)
T ss_pred ccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCC-CCCCeEC
Confidence 7899999999999999999873 33222221 36899999999999999999999999999999655 5889999
Q ss_pred eeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHH--HCCCeEEEEcCCCcChh-hhhcCCcccCC
Q 029969 91 REIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIA--KLGIDVYIVKAASSHSV-KALSGELREKI 167 (184)
Q Consensus 91 ~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~--~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~ 167 (184)
++++..+ ++.+.. .+.+.+|||.+|+++|.+++ +.|++++|++ ++.+ ++|+|+ .
T Consensus 252 ~~i~~~e----------~~~~~~------~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i~~~l~g~-~--- 308 (314)
T PRK12353 252 DEVTVSE----------AEKYIE------EGQFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKAKEALEGK-A--- 308 (314)
T ss_pred cCcCHHH----------HHHHHh------cCCcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHHHHHhCCC-C---
Confidence 9998765 233211 23578999999999999988 6688999997 4565 789887 3
Q ss_pred CCCccccEEEc
Q 029969 168 PDDWLGTVIHF 178 (184)
Q Consensus 168 ~~~~~GT~i~~ 178 (184)
||+|.+
T Consensus 309 -----GT~i~~ 314 (314)
T PRK12353 309 -----GTVIVK 314 (314)
T ss_pred -----CeEecC
Confidence 999964
No 26
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.89 E-value=4.1e-23 Score=169.61 Aligned_cols=114 Identities=25% Similarity=0.374 Sum_probs=97.3
Q ss_pred CCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceeee
Q 029969 12 GGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLLR 91 (184)
Q Consensus 12 ~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li~ 91 (184)
.|+++.++.+.|+.+|++|+|||++|.++. +.++.+++++|.+|++||.+|+|++|+|+|||+|||++|| +++|+
T Consensus 117 ~g~i~~i~~~~i~~~l~~g~IPVi~~~~~~-~~g~~~~l~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~----~~~i~ 191 (231)
T TIGR00761 117 VGEIKKVNKALLEALLKAGYIPVISSLALT-AEGQALNVNADTAAGALAAALGAEKLVLLTDVPGILNGDG----QSLIS 191 (231)
T ss_pred ccceEEEcHHHHHHHHHCCCeEEECCCccC-CCCcEEEeCHHHHHHHHHHHcCCCEEEEEECCCCeecCCC----Ceecc
Confidence 588999999999999999999999997653 3345789999999999999999999999999999999854 36999
Q ss_pred eeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCe-EEE
Q 029969 92 EIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGID-VYI 147 (184)
Q Consensus 92 ~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~-v~I 147 (184)
+|+.+|+ .++. ...++||||++||++|.++++.|++ +||
T Consensus 192 ~i~~~e~----------~~l~-------~~~~~tggm~~Kl~~a~~a~~~gv~~v~i 231 (231)
T TIGR00761 192 EIPLEEI----------EQLI-------EQGIITGGMIPKVNAALEALRGGVKSVHI 231 (231)
T ss_pred ccCHHHH----------HHHH-------HcCCCCCchHHHHHHHHHHHHcCCCEEEC
Confidence 9998653 2221 1247999999999999999999997 664
No 27
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.89 E-value=5.1e-23 Score=192.94 Aligned_cols=144 Identities=25% Similarity=0.401 Sum_probs=118.5
Q ss_pred eechHHHHHHHHcCCeeEEcC-ceEeeCCC-----ceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceee
Q 029969 17 VADLSVVAKTIKSGFVPVLHG-DAVLDDVQ-----GCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLL 90 (184)
Q Consensus 17 ~~~~~~I~~lL~~G~IPIv~g-d~~~~e~~-----~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li 90 (184)
....+.|+.||+.|+|||+++ |.+.+... ...+.++|++|++||..++||+|+|+|||||||++||++|++++|
T Consensus 136 ~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~~~~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~~~~a~~i 215 (718)
T PLN02418 136 KQLSETVESLLDLRVIPIFNENDAVSTRRAPYEDSSGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPSDPSSKLI 215 (718)
T ss_pred HhHHHHHHHHHHCCCEEEEcCCCCccccccccccccCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCCCCCceEc
Confidence 445789999999999999996 77764322 124667999999999999999999999999999999988999999
Q ss_pred eeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCC
Q 029969 91 REIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPD 169 (184)
Q Consensus 91 ~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~ 169 (184)
++++..+. ...+. .+..+.++||||.+||++|..+.++|++++|++|+.++.+ ++|+|+.
T Consensus 216 ~~i~~~~~------~~~i~-------~~~~s~~~tGGM~~Kl~Aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~------ 276 (718)
T PLN02418 216 HTYIKEKH------QDEIT-------FGEKSRVGRGGMTAKVKAAVNAASAGIPVVITSGYALDNIRKVLRGER------ 276 (718)
T ss_pred ceecccch------hhhhh-------cccccccCCCCcHHHHHHHHHHHHCCCcEEEeCCCCcchHHHHhcCCC------
Confidence 99977552 11111 1124568999999999999999999999999999999986 7899887
Q ss_pred CccccEEEcCcc
Q 029969 170 DWLGTVIHFSRE 181 (184)
Q Consensus 170 ~~~GT~i~~~~~ 181 (184)
.||+|.++.|
T Consensus 277 --~GT~i~~~~~ 286 (718)
T PLN02418 277 --VGTLFHQDAH 286 (718)
T ss_pred --CceEeccccc
Confidence 4999998765
No 28
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.89 E-value=7.3e-23 Score=170.27 Aligned_cols=133 Identities=20% Similarity=0.257 Sum_probs=106.1
Q ss_pred cCCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceee
Q 029969 11 SGGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLL 90 (184)
Q Consensus 11 ~~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li 90 (184)
..|+++++|.+.|+.+|+.|+|||++|+++.+ ..+.+|+|+|++|+.+|.+|+|++|+|+|||+|||++ +++++
T Consensus 111 ~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~-~g~~~nvnaD~~A~~lA~aL~a~kli~ltdv~GV~~~-----~g~~i 184 (248)
T cd04252 111 LVGKITGVNKAPIEAAIRAGYLPILTSLAETP-SGQLLNVNADVAAGELARVLEPLKIVFLNETGGLLDG-----TGKKI 184 (248)
T ss_pred ccCceeeECHHHHHHHHHCCCeEEECCceECC-CCCEEEECHHHHHHHHHHHcCCCeEEEEECCcccCCC-----CCCcc
Confidence 36999999999999999999999999998854 3457899999999999999999999999999999975 46899
Q ss_pred eeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHC--CC-eEEEEcCCCcChh--hhhcCCccc
Q 029969 91 REIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKL--GI-DVYIVKAASSHSV--KALSGELRE 165 (184)
Q Consensus 91 ~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~--gi-~v~I~~g~~~~~l--~~l~Ge~~~ 165 (184)
++++..+. .+++. ...++||||++||++|..+.+. ++ .++|.+ ++.+ +.+..+.
T Consensus 185 ~~i~~~~~---------~~~l~-------~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~---~~~ll~elf~~~g-- 243 (248)
T cd04252 185 SAINLDEE---------YDDLM-------KQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS---PDDLQKELFTHSG-- 243 (248)
T ss_pred cccCHHHH---------HHHHH-------HcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC---CchHHHHHhcCCC--
Confidence 99986421 22221 1358999999999999998886 44 488887 3554 3444444
Q ss_pred CCCCCccccEE
Q 029969 166 KIPDDWLGTVI 176 (184)
Q Consensus 166 ~~~~~~~GT~i 176 (184)
.||.|
T Consensus 244 ------~GT~i 248 (248)
T cd04252 244 ------AGTLI 248 (248)
T ss_pred ------CCccC
Confidence 38875
No 29
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.88 E-value=2.3e-22 Score=178.79 Aligned_cols=136 Identities=17% Similarity=0.185 Sum_probs=113.2
Q ss_pred CCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceeee
Q 029969 12 GGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLLR 91 (184)
Q Consensus 12 ~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li~ 91 (184)
.|+|+++|.+.|+.+|++|+|||+++.++.. .++.+|+|+|++|+.||.+|+|++|||+|||+|||++ ++++|+
T Consensus 142 ~G~v~~v~~~~l~~ll~~g~ipvi~pi~~~~-~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~-----~g~~i~ 215 (429)
T TIGR01890 142 TGVIRKIDTEGIRRQLDAGSIVLLSPLGHSP-TGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDP-----DGTLAA 215 (429)
T ss_pred cceEEEEcHHHHHHHHHCCCeEEECCcccCC-CCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC-----CCCCcc
Confidence 4999999999999999999999999988853 3468999999999999999999999999999999974 478999
Q ss_pred eeeccCCCCcccchhHHHhhccchhhhcccccccCc-hHHHHHHHHHHHHCCCe-EEEEcCCCcChh-h-hhcCCcccCC
Q 029969 92 EIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGG-MVTKISEAAMIAKLGID-VYIVKAASSHSV-K-ALSGELREKI 167 (184)
Q Consensus 92 ~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGg-m~~Kl~aa~~a~~~gi~-v~I~~g~~~~~l-~-~l~Ge~~~~~ 167 (184)
+|+.+|+ +++.. ...|| |.+|+++|..|++.|++ +||++++.++.+ . ++..+.
T Consensus 216 ~i~~~~~----------~~l~~---------~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g---- 272 (429)
T TIGR01890 216 ELSPQEV----------ESLAE---------RLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDG---- 272 (429)
T ss_pred cCCHHHH----------HHHHH---------hccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCC----
Confidence 9998653 22210 13455 49999999999999975 999999999985 4 455555
Q ss_pred CCCccccEEEcCc
Q 029969 168 PDDWLGTVIHFSR 180 (184)
Q Consensus 168 ~~~~~GT~i~~~~ 180 (184)
.||+|+.++
T Consensus 273 ----~GT~i~~d~ 281 (429)
T TIGR01890 273 ----IGTSISKEA 281 (429)
T ss_pred ----CcceEeccc
Confidence 399998764
No 30
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.87 E-value=6.7e-22 Score=168.81 Aligned_cols=134 Identities=25% Similarity=0.380 Sum_probs=106.5
Q ss_pred ceechHHHHHHHHcCCeeEEcCce---EeeCCCce----eeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCce
Q 029969 16 PVADLSVVAKTIKSGFVPVLHGDA---VLDDVQGC----AILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAV 88 (184)
Q Consensus 16 ~~~~~~~I~~lL~~G~IPIv~gd~---~~~e~~~~----~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~ 88 (184)
+.++.+.|+.||++|.|||++|++ +.++.+.. .++|+|.+|++||.+|+||+|||||||+|||++ +++|+++
T Consensus 171 ~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~~p~~~ 249 (313)
T PRK12454 171 GIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-YGKPDQK 249 (313)
T ss_pred cccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CCCCCCe
Confidence 457899999999999999999774 44332222 257889999999999999999999999999985 6678899
Q ss_pred eeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCC-CeEEEEcCCCcChh-hhhcCCcccC
Q 029969 89 LLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLG-IDVYIVKAASSHSV-KALSGELREK 166 (184)
Q Consensus 89 li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~g-i~v~I~~g~~~~~l-~~l~Ge~~~~ 166 (184)
+|++++.+|+ +.+.. ...+.+|||.+|+++|.++++.| .+++|.+ ++.+ ++|+|+.
T Consensus 250 ~i~~It~~e~----------~~~i~------~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i~~aL~G~~--- 307 (313)
T PRK12454 250 PLDKVTVEEA----------KKYYE------EGHFKAGSMGPKILAAIRFVENGGKRAIIAS---LEKAVEALEGKT--- 307 (313)
T ss_pred EccccCHHHH----------HHHHh------cCCcCCCChHHHHHHHHHHHHcCCCeEEECc---hHHHHHHHCCCC---
Confidence 9999998763 22211 23578899999999999998886 4699985 3455 7899873
Q ss_pred CCCCccccEEEc
Q 029969 167 IPDDWLGTVIHF 178 (184)
Q Consensus 167 ~~~~~~GT~i~~ 178 (184)
||+|.+
T Consensus 308 ------GT~I~~ 313 (313)
T PRK12454 308 ------GTRIIP 313 (313)
T ss_pred ------CeEeCC
Confidence 999964
No 31
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.87 E-value=6e-22 Score=166.67 Aligned_cols=132 Identities=16% Similarity=0.192 Sum_probs=111.2
Q ss_pred cCCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceee
Q 029969 11 SGGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLL 90 (184)
Q Consensus 11 ~~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li 90 (184)
..|+|+++|.+.|+.+|++|+|||+++.+++. .+..+|+|+|++|..||.+|+|++|||+||++|||++ ++++|
T Consensus 134 ~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~-~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~~~-----~g~lI 207 (271)
T cd04236 134 SKGPSVSVDTELLQWCLGSGHIPLVCPIGETS-SGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQ-----KHKVL 207 (271)
T ss_pred ccceEEEECHHHHHHHHhCCCeEEECCceECC-CCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceECC-----CCCCc
Confidence 46999999999999999999999999988753 3467999999999999999999999999999999974 47899
Q ss_pred eeeec-cCCCCcccchhHHHhhccchhhhcccccccCch---HHHHHHHHHHHHCCCeEEEEcCCCcCh-h-hhhcCCcc
Q 029969 91 REIAV-GEDGSWSITKPTLQHMNNQVEITVAAHDTTGGM---VTKISEAAMIAKLGIDVYIVKAASSHS-V-KALSGELR 164 (184)
Q Consensus 91 ~~I~~-~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm---~~Kl~aa~~a~~~gi~v~I~~g~~~~~-l-~~l~Ge~~ 164 (184)
++++. +| ++.+. ....++||| .+|+++|+.+..+|+.|+|++ ++. + ++++...
T Consensus 208 ~~l~~~~e----------~~~li-------~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~---~~~ll~elft~~g- 266 (271)
T cd04236 208 PQVHLPAD----------LPSLS-------DAEWLSETEQNRIQDIATLLNALPSMSSAVITS---AETLLTELFSHKG- 266 (271)
T ss_pred cccCcHHH----------HHHHH-------hCCEEcCCeeechHHHHHHHHhcccCCeEEEeC---hHHHHHHHhccCC-
Confidence 99996 44 33331 246899999 999999999999999999997 554 3 6776555
Q ss_pred cCCCCCccccEE
Q 029969 165 EKIPDDWLGTVI 176 (184)
Q Consensus 165 ~~~~~~~~GT~i 176 (184)
.||.|
T Consensus 267 -------~GT~~ 271 (271)
T cd04236 267 -------SGTLF 271 (271)
T ss_pred -------CCCcC
Confidence 38864
No 32
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.87 E-value=1.1e-21 Score=167.54 Aligned_cols=132 Identities=26% Similarity=0.384 Sum_probs=104.8
Q ss_pred eechHHHHHHHHcCCeeEEcCc---eEeeCCC---c-eeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCcee
Q 029969 17 VADLSVVAKTIKSGFVPVLHGD---AVLDDVQ---G-CAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVL 89 (184)
Q Consensus 17 ~~~~~~I~~lL~~G~IPIv~gd---~~~~e~~---~-~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~l 89 (184)
-++.+.|+.||++|+|||++|+ .+..+.+ + ..++|+|++|++||.+++||+|+++|||||||++ +++|++++
T Consensus 168 iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~-~~~pda~~ 246 (308)
T cd04235 168 IVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYIN-FGKPNQKA 246 (308)
T ss_pred ccCHHHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECC-CCCCCCeE
Confidence 5678999999999999999976 3432222 2 2368999999999999999999999999999985 55688999
Q ss_pred eeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCC-CeEEEEcCCCcChh-hhhcCCcccCC
Q 029969 90 LREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLG-IDVYIVKAASSHSV-KALSGELREKI 167 (184)
Q Consensus 90 i~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~g-i~v~I~~g~~~~~l-~~l~Ge~~~~~ 167 (184)
|++|+.+++ ..+.. .+.+.+|||.+|+++|.++++.| .+++|.+ ++.+ ++|+|+.
T Consensus 247 i~~Is~~e~----------~~l~~------~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~---~~~i~~aL~G~~---- 303 (308)
T cd04235 247 LEQVTVEEL----------EKYIE------EGQFAPGSMGPKVEAAIRFVESGGKKAIITS---LENAEAALEGKA---- 303 (308)
T ss_pred cCCcCHHHH----------HHHHh------cCccccCCcHHHHHHHHHHHHhCCCeEEECC---HHHHHHHHCCCC----
Confidence 999998763 22211 24678999999999999988876 5688866 4455 7899873
Q ss_pred CCCccccEEE
Q 029969 168 PDDWLGTVIH 177 (184)
Q Consensus 168 ~~~~~GT~i~ 177 (184)
||+|.
T Consensus 304 -----GT~I~ 308 (308)
T cd04235 304 -----GTVIV 308 (308)
T ss_pred -----CeEEC
Confidence 99873
No 33
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.87 E-value=1.9e-21 Score=159.48 Aligned_cols=117 Identities=35% Similarity=0.503 Sum_probs=101.0
Q ss_pred eechHHHHHHHHcCCeeEEcCceEeeCCCce---eeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeee
Q 029969 17 VADLSVVAKTIKSGFVPVLHGDAVLDDVQGC---AILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLRE 92 (184)
Q Consensus 17 ~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~---~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~ 92 (184)
.++.+.|+.+|++|.|||++|+...+..+.. +++++|.+|++||..|+|++|+|+|||+|||+.|| .+|+++++++
T Consensus 121 ~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~ 200 (242)
T PF00696_consen 121 EVDKEAIRELLEQGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPE 200 (242)
T ss_dssp EEHHHHHHHHHHTTSEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESE
T ss_pred hhHHHHHHHHHHCCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeE
Confidence 5789999999999999999998865444445 79999999999999999999999999999999999 6699999999
Q ss_pred eeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHC-CCeEEEEc
Q 029969 93 IAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKL-GIDVYIVK 149 (184)
Q Consensus 93 I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~-gi~v~I~~ 149 (184)
|+++|+ ..+.. ...+++|||+.|+.+|..+++. +++|+|+|
T Consensus 201 l~~~e~----------~~l~~------~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n 242 (242)
T PF00696_consen 201 LSYDEA----------EELAS------KSGDVTGGMKPKHPAALEAAEEGGIPVHIIN 242 (242)
T ss_dssp EEHHHH----------HHHHH------HTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred eeHHHH----------HHHHh------cCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence 999874 22210 2478999999999999999887 56899986
No 34
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.87 E-value=1.2e-21 Score=167.73 Aligned_cols=132 Identities=27% Similarity=0.401 Sum_probs=102.5
Q ss_pred eechHHHHHHHHcCCeeEEcCc-e--EeeCCCc----eeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCcee
Q 029969 17 VADLSVVAKTIKSGFVPVLHGD-A--VLDDVQG----CAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVL 89 (184)
Q Consensus 17 ~~~~~~I~~lL~~G~IPIv~gd-~--~~~e~~~----~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~l 89 (184)
.++.+.|+.||++|.++|.+|. + +..+.+. ..++|+|.+|+++|.+++||+|||||||||||++ |++|++++
T Consensus 169 iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~-~~~p~a~~ 247 (310)
T TIGR00746 169 IVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYIN-YGKPDEKA 247 (310)
T ss_pred hccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCC-CCCCCCcC
Confidence 4789999999999995554421 1 2222111 1378999999999999999999999999999986 66788999
Q ss_pred eeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCC-CeEEEEcCCCcChh-hhhcCCcccCC
Q 029969 90 LREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLG-IDVYIVKAASSHSV-KALSGELREKI 167 (184)
Q Consensus 90 i~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~g-i~v~I~~g~~~~~l-~~l~Ge~~~~~ 167 (184)
+++++.+| ++.+.. .+.+.+|||.+|+++|..+++.| .+++|++ ++.+ ++|+|+ .
T Consensus 248 i~~it~~e----------~~~~~~------~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i~~~l~G~-~--- 304 (310)
T TIGR00746 248 LREVTVEE----------LEDYYK------AGHFAAGSMGPKVEAAIEFVESGGKRAIITS---LENAVEALEGK-A--- 304 (310)
T ss_pred CcCcCHHH----------HHHHHh------cCCcCCCCcHHHHHHHHHHHHhCCCeEEEec---hHHHHHHHCCC-C---
Confidence 99999865 333321 34678999999999999888875 6799987 4555 789997 4
Q ss_pred CCCccccEEE
Q 029969 168 PDDWLGTVIH 177 (184)
Q Consensus 168 ~~~~~GT~i~ 177 (184)
||+|.
T Consensus 305 -----GT~I~ 309 (310)
T TIGR00746 305 -----GTRVT 309 (310)
T ss_pred -----CcEEe
Confidence 99985
No 35
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.86 E-value=2.6e-21 Score=165.93 Aligned_cols=135 Identities=25% Similarity=0.289 Sum_probs=105.3
Q ss_pred cceechHHHHHHHHcCCeeEEc-----CceEee--CCCc-eeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCC
Q 029969 15 LPVADLSVVAKTIKSGFVPVLH-----GDAVLD--DVQG-CAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPN 86 (184)
Q Consensus 15 v~~~~~~~I~~lL~~G~IPIv~-----gd~~~~--e~~~-~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~ 86 (184)
++.+|.+.|+.||++|+|||.+ |.+.+. +..+ .+|+++|.+|+.+|.+|+||+|||||||+|||+++ .+|+
T Consensus 171 v~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV~~d~-~~~~ 249 (316)
T PRK12352 171 KRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHF-GKPQ 249 (316)
T ss_pred ceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhhccCC-CCCC
Confidence 9999999999999999996665 222221 1112 46799999999999999999999999999999764 4467
Q ss_pred ceeeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCe-EEEEcCCCcChh-hhhcCCcc
Q 029969 87 AVLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGID-VYIVKAASSHSV-KALSGELR 164 (184)
Q Consensus 87 ~~li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~-v~I~~g~~~~~l-~~l~Ge~~ 164 (184)
++++++++..|+ +.+.. ......|||.+|+++|..+++.|+. +||++ ++.+ ++|+|+.
T Consensus 250 ~~li~~lt~~e~----------~~li~------~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~---~~~i~~al~g~~- 309 (316)
T PRK12352 250 QQALDRVDIATM----------TRYMQ------EGHFPPGSMLPKIIASLTFLEQGGKEVIITT---PECLPAALRGET- 309 (316)
T ss_pred cccccccCHHHH----------HHHHh------cCCcCCCCCHHHHHHHHHHHHhCCCeEEEcc---hHHHHHHHcCCC-
Confidence 789999999763 33211 1223468999999999999999885 99996 4444 8999873
Q ss_pred cCCCCCccccEEEc
Q 029969 165 EKIPDDWLGTVIHF 178 (184)
Q Consensus 165 ~~~~~~~~GT~i~~ 178 (184)
||+|..
T Consensus 310 --------GT~I~~ 315 (316)
T PRK12352 310 --------GTHIIK 315 (316)
T ss_pred --------CeEEEe
Confidence 999863
No 36
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.86 E-value=9.7e-22 Score=161.72 Aligned_cols=127 Identities=21% Similarity=0.361 Sum_probs=104.8
Q ss_pred cceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeee
Q 029969 15 LPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREI 93 (184)
Q Consensus 15 v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I 93 (184)
+...+.+.+..+|++|.|||++|+. +..++++|.+|+++|..++|+.++++|||||||++|| ++|+++++++|
T Consensus 103 ~~~~~~~~i~~ll~~g~vpV~~G~~------~~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i 176 (231)
T PRK14558 103 VEPINYDDIELYFRAGYIVIFAGGT------SNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHL 176 (231)
T ss_pred hhhhhHHHHHHHHHCCCEEEEECCC------CCCCCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccc
Confidence 4455689999999999999999852 2346789999999999999999999999999999999 78999999999
Q ss_pred eccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCcc
Q 029969 94 AVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWL 172 (184)
Q Consensus 94 ~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~ 172 (184)
++.|. ++ + ....| +..++..|.+.|++++|+|+.+++.+ ++|+|+. .
T Consensus 177 ~~~e~---------~~-~------------g~~~~--d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~--------~ 224 (231)
T PRK14558 177 TFSEA---------IK-M------------GLKVM--DTEAFSICKKYGITILVINFFEPGNLLKALKGEN--------V 224 (231)
T ss_pred cHHHH---------HH-c------------Ccccc--cHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCC--------C
Confidence 88653 11 1 01122 46777788899999999999999986 7899987 4
Q ss_pred ccEEEcC
Q 029969 173 GTVIHFS 179 (184)
Q Consensus 173 GT~i~~~ 179 (184)
||+|.++
T Consensus 225 GT~i~~~ 231 (231)
T PRK14558 225 GTLVVPD 231 (231)
T ss_pred cEEeCCC
Confidence 9999763
No 37
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.86 E-value=4.2e-21 Score=160.99 Aligned_cols=135 Identities=24% Similarity=0.302 Sum_probs=104.5
Q ss_pred cceechHHHHHHHHcCCeeEEcCceE-ee----CCCc-eeeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCc
Q 029969 15 LPVADLSVVAKTIKSGFVPVLHGDAV-LD----DVQG-CAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNA 87 (184)
Q Consensus 15 v~~~~~~~I~~lL~~G~IPIv~gd~~-~~----e~~~-~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~ 87 (184)
+...+...++++|+.|+|||++|+.. .. ...+ .+++|+|++|+++|.+++|++|+++|||||||++|| ++|++
T Consensus 120 i~~~~~~~l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a 199 (262)
T cd04255 120 VGHGDLLQLPTFLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKA 199 (262)
T ss_pred cccccHHHHHHHHHCCCeEEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCC
Confidence 33467788999999999999998632 11 1123 568999999999999999999999999999999999 77999
Q ss_pred eeeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccC
Q 029969 88 VLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREK 166 (184)
Q Consensus 88 ~li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~ 166 (184)
++|++|+..+ +..+.. .....+++|..|++++ +..++++|++|+.++++ ++++|+.
T Consensus 200 ~~i~~i~~~~----------~~~~~~------~~~~~~~~~~~~l~aa----~~~~~v~I~~g~~~~~L~~~l~g~~--- 256 (262)
T cd04255 200 EFIPEISAAE----------LLKKDL------DDLVLERPVLDLLQNA----RHVKEVQIVNGLVPGNLTRALRGEH--- 256 (262)
T ss_pred eEccEeCHHH----------HHHHhc------CCCCCcHHHHHHHHHh----CCCCcEEEEeCCCCCHHHHHHcCCC---
Confidence 9999999855 222210 0112467777777664 33358999999999986 7899987
Q ss_pred CCCCccccEEE
Q 029969 167 IPDDWLGTVIH 177 (184)
Q Consensus 167 ~~~~~~GT~i~ 177 (184)
.||+|+
T Consensus 257 -----~GT~i~ 262 (262)
T cd04255 257 -----VGTIIR 262 (262)
T ss_pred -----CceEeC
Confidence 399985
No 38
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.86 E-value=2.5e-21 Score=158.96 Aligned_cols=123 Identities=20% Similarity=0.265 Sum_probs=102.5
Q ss_pred eechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeec
Q 029969 17 VADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAV 95 (184)
Q Consensus 17 ~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~ 95 (184)
..+.+.+..+++.|.|||++|+. +..+.++|.+|+++|..|+|++|+|+|||+|||++|| .+|++++|++|++
T Consensus 105 ~~~~~~l~~~l~~g~ipVi~g~~------g~~~~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~ 178 (229)
T cd04239 105 PYIRRRAIRHLEKGRIVIFGGGT------GNPGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISY 178 (229)
T ss_pred cccHHHHHHHHhCCCEEEEeCcc------CCCCCCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcH
Confidence 35788999999999999999864 2235689999999999999999999999999999999 6799999999998
Q ss_pred cCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCcccc
Q 029969 96 GEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLGT 174 (184)
Q Consensus 96 ~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~GT 174 (184)
.|+ .++. .|..++.++..+.+.|++++|++++.++.+ ++|+|+. .||
T Consensus 179 ~e~----------~~~~--------------~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~--------~GT 226 (229)
T cd04239 179 DEL----------LKKG--------------LKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEH--------VGT 226 (229)
T ss_pred HHH----------HHHh--------------cCCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCC--------CCe
Confidence 653 2220 033466777788999999999999999987 7899986 399
Q ss_pred EEE
Q 029969 175 VIH 177 (184)
Q Consensus 175 ~i~ 177 (184)
+|.
T Consensus 227 ~i~ 229 (229)
T cd04239 227 LIE 229 (229)
T ss_pred EeC
Confidence 873
No 39
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.86 E-value=4.6e-21 Score=156.57 Aligned_cols=127 Identities=24% Similarity=0.392 Sum_probs=104.0
Q ss_pred chHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeeccC
Q 029969 19 DLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAVGE 97 (184)
Q Consensus 19 ~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~~e 97 (184)
+......+++.|.+||++|+. ..+++|++|+++|.+++|++|+++|||||||++|| ++|++++|++|+.+|
T Consensus 92 ~~~~~~~~l~~g~ipv~~G~~--------~~~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e 163 (221)
T TIGR02076 92 NFEEALEAMSLGKIVVMGGTH--------PGHTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEE 163 (221)
T ss_pred CHHHHHHHHHcCCEEEEcCCC--------CCCCcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHH
Confidence 455667888999999999852 14799999999999999999999999999999999 789999999999865
Q ss_pred CCCcccchhHHHhhccchhhhcccccccC-chHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCccccE
Q 029969 98 DGSWSITKPTLQHMNNQVEITVAAHDTTG-GMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLGTV 175 (184)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~vtG-gm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~GT~ 175 (184)
+.++.. .....+| +|..|+.++..+.+.|++++|++++.++.+ ++|+|+. .||+
T Consensus 164 ----------~~~~~~------~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~--------~GT~ 219 (221)
T TIGR02076 164 ----------LVEIVG------SSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEH--------VGTI 219 (221)
T ss_pred ----------HHHHhc------CCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCC--------CCeE
Confidence 333311 1233456 567889988899999999999999999986 7899886 3998
Q ss_pred EE
Q 029969 176 IH 177 (184)
Q Consensus 176 i~ 177 (184)
|.
T Consensus 220 i~ 221 (221)
T TIGR02076 220 IE 221 (221)
T ss_pred eC
Confidence 73
No 40
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.86 E-value=5.7e-21 Score=156.17 Aligned_cols=129 Identities=25% Similarity=0.372 Sum_probs=105.8
Q ss_pred eechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeec
Q 029969 17 VADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAV 95 (184)
Q Consensus 17 ~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~ 95 (184)
.++.+.+..+|+.|.+||++|+.. .+++|++|+++|.+|+|++|+++|||+|||++|| .+|++++|++|+.
T Consensus 90 ~~~~~~~~~~l~~g~vpv~~G~~~--------~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~ 161 (221)
T cd04253 90 PTSYEEALEAMFTGKIVVMGGTEP--------GQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSA 161 (221)
T ss_pred CCCHHHHHHHHHcCCeEEEECCCC--------CCccHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCH
Confidence 345788899999999999999631 3689999999999999999999999999999999 7899999999998
Q ss_pred cCCCCcccchhHHHhhccchhhhcccccccCc-hHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCccc
Q 029969 96 GEDGSWSITKPTLQHMNNQVEITVAAHDTTGG-MVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLG 173 (184)
Q Consensus 96 ~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGg-m~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~G 173 (184)
+| +.++.. ......|+ |..|+.++..+.+.|++++|++++.|+.+ ++|+|+. .|
T Consensus 162 ~e----------~~~~~~------~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~--------~G 217 (221)
T cd04253 162 DE----------LIDIVG------KSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEF--------VG 217 (221)
T ss_pred HH----------HHHHcc------CCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCC--------CC
Confidence 65 333321 01122343 56788999999999999999999999987 7899986 49
Q ss_pred cEEE
Q 029969 174 TVIH 177 (184)
Q Consensus 174 T~i~ 177 (184)
|.|.
T Consensus 218 T~I~ 221 (221)
T cd04253 218 TIIE 221 (221)
T ss_pred eEeC
Confidence 9873
No 41
>PRK14556 pyrH uridylate kinase; Provisional
Probab=99.85 E-value=8.3e-21 Score=157.70 Aligned_cols=127 Identities=20% Similarity=0.292 Sum_probs=104.9
Q ss_pred CcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeee
Q 029969 14 NLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLRE 92 (184)
Q Consensus 14 ~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~ 92 (184)
.....+.+.+.++|++|.|+|+.|. .|..++++|++|+++|..++||.|+++|||||||++|| ++|+++++++
T Consensus 120 ~~e~~~~~~~~~~l~~g~vvi~~gg------~G~p~~StD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~ 193 (249)
T PRK14556 120 LLKVASAHEFNQELAKGRVLIFAGG------TGNPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDK 193 (249)
T ss_pred CCCCCCHHHHHHHHhCCCEEEEECC------CCCCcCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeE
Confidence 3445578888999999999998863 23468999999999999999999999999999999999 8999999999
Q ss_pred eeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCc
Q 029969 93 IAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDW 171 (184)
Q Consensus 93 I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~ 171 (184)
|++.+.. ...+. + .+..++..+.++|++++|++++.++++ ++|.|+.
T Consensus 194 I~~~e~~-----~~~l~--------------v-----md~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~-------- 241 (249)
T PRK14556 194 VTFSEVV-----SKELN--------------V-----MDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSK-------- 241 (249)
T ss_pred Echhhhc-----ccchH--------------h-----HHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCC--------
Confidence 9987741 11111 1 245678888899999999999999987 7999987
Q ss_pred cccEEEc
Q 029969 172 LGTVIHF 178 (184)
Q Consensus 172 ~GT~i~~ 178 (184)
.||+|.-
T Consensus 242 ~GT~i~~ 248 (249)
T PRK14556 242 YGTWVTL 248 (249)
T ss_pred CceEEEe
Confidence 4999964
No 42
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.85 E-value=6.9e-21 Score=156.41 Aligned_cols=121 Identities=18% Similarity=0.284 Sum_probs=100.7
Q ss_pred chHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeeccC
Q 029969 19 DLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAVGE 97 (184)
Q Consensus 19 ~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~~e 97 (184)
..+.+.++|++|.|||++|.. +..+.++|.+|+++|..|+|++|+|+|||||||++|| .+|++++|++|+++|
T Consensus 109 ~~~~~~~~l~~g~vPVv~g~~------~~~~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e 182 (231)
T PRK00358 109 IRRRAIRHLEKGRVVIFAAGT------GNPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDE 182 (231)
T ss_pred cHHHHHHHHHCCCEEEEECCC------CCCCCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHH
Confidence 456788999999999998631 2235789999999999999999999999999999999 679999999998754
Q ss_pred CCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCccccEE
Q 029969 98 DGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLGTVI 176 (184)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~GT~i 176 (184)
+ ..+ |....|+.++..|.+.|++++|+|++.++.+ ++|+|+. .||+|
T Consensus 183 ~----------~~~--------------g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~--------~GT~i 230 (231)
T PRK00358 183 V----------LEK--------------GLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEH--------IGTLV 230 (231)
T ss_pred H----------HHc--------------CCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCC--------CCEEe
Confidence 2 211 2233588888889999999999999999987 7899986 49997
Q ss_pred E
Q 029969 177 H 177 (184)
Q Consensus 177 ~ 177 (184)
.
T Consensus 231 ~ 231 (231)
T PRK00358 231 S 231 (231)
T ss_pred C
Confidence 3
No 43
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.85 E-value=3.5e-21 Score=156.95 Aligned_cols=138 Identities=23% Similarity=0.403 Sum_probs=113.5
Q ss_pred hHHHHHHHHcCCeeEEc-CceEeeCCCceeee---chhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceeeeeeec
Q 029969 20 LSVVAKTIKSGFVPVLH-GDAVLDDVQGCAIL---SGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLLREIAV 95 (184)
Q Consensus 20 ~~~I~~lL~~G~IPIv~-gd~~~~e~~~~~~~---s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li~~I~~ 95 (184)
...|.+||.-|.|||++ +|.++... ..+. ++|++|+.+|.+++||.||+||||||+|+++|.....++++..+.
T Consensus 135 ~~Ti~eLL~m~viPIvNeNDavs~~~--~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~~~~~li~~~~~ 212 (285)
T KOG1154|consen 135 QNTISELLSMNVIPIVNENDAVSPRE--IPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDADPSKLIHTFSP 212 (285)
T ss_pred HHHHHHHHhCCceeeecCCCccCCcc--cccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCCCcceeeeeecc
Confidence 46799999999999999 99997321 1233 599999999999999999999999999998775545789988877
Q ss_pred cCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCcccc
Q 029969 96 GEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLGT 174 (184)
Q Consensus 96 ~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~GT 174 (184)
.+-. .. ..+++.+...||||.+|+.||..|...|++|+|.+|..+.++ +++.|..+ ||
T Consensus 213 ~~~~--------v~-----~tfG~~SkvGtGGM~tKv~AA~~A~~~Gv~viI~~g~~p~~I~~iv~g~kv--------gt 271 (285)
T KOG1154|consen 213 GDPQ--------VS-----TTFGSKSKVGTGGMETKVKAAVNALNAGVSVIITNGDAPENITDIVEGKKV--------GT 271 (285)
T ss_pred CCCC--------Cc-----cccCccCccCcCcchhhHHHHHHHhcCCceEEEeCCCChHHHHHHHhhhhh--------hh
Confidence 6531 11 123457889999999999999999999999999999999988 78998774 88
Q ss_pred EEEcCc
Q 029969 175 VIHFSR 180 (184)
Q Consensus 175 ~i~~~~ 180 (184)
.+...+
T Consensus 272 ~f~~~~ 277 (285)
T KOG1154|consen 272 FFEQLK 277 (285)
T ss_pred hhhhcc
Confidence 877543
No 44
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=99.85 E-value=6.7e-21 Score=157.31 Aligned_cols=121 Identities=24% Similarity=0.265 Sum_probs=101.6
Q ss_pred CCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeee---chhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCc
Q 029969 12 GGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAIL---SGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNA 87 (184)
Q Consensus 12 ~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~---s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~ 87 (184)
.|++..++.+.|+.++++|.|||++|+...++.+..+++ ++|.+|+++|.+|+|++|+|+|||+|||++|| .+|++
T Consensus 108 ~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a 187 (239)
T cd04246 108 NARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKA 187 (239)
T ss_pred ceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCC
Confidence 477778889999999999999999997444444456677 79999999999999999999999999999999 67899
Q ss_pred eeeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 88 VLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 88 ~li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
+++++++++|+ .++. -.|.+..|++++..+.++|++++|.+++.+
T Consensus 188 ~~i~~l~~~e~----------~~l~-----------~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~ 232 (239)
T cd04246 188 RKLDVISYDEM----------LEMA-----------SLGAKVLHPRSVELAKKYNVPLRVRSSFSE 232 (239)
T ss_pred eEcccCCHHHH----------HHHH-----------hCCCcccCHHHHHHHHHCCCeEEEecCCCC
Confidence 99999998763 3331 015567889999999999999999998754
No 45
>PRK14557 pyrH uridylate kinase; Provisional
Probab=99.85 E-value=2.2e-20 Score=155.45 Aligned_cols=126 Identities=16% Similarity=0.256 Sum_probs=101.8
Q ss_pred echHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEe-ecccceecCCC-cCCCceeeeeeec
Q 029969 18 ADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFL-TDVLGVYSHPP-TEPNAVLLREIAV 95 (184)
Q Consensus 18 ~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~l-tdVdGVy~~dp-~~p~~~li~~I~~ 95 (184)
.....+..+|++|.|||+.|. .|..++++|++|+++|..++||+|+++ |||||||++|| ++|++++|++|++
T Consensus 113 ~~~~~~~~~l~~g~VvV~~G~------~g~~~~stD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~ 186 (247)
T PRK14557 113 YIRLRAVHHLDNGYIVIFGGG------NGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNY 186 (247)
T ss_pred hhHHHHHHHHhCCCEEEEECC------cCCCccChHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEECh
Confidence 334457777999999999873 234578999999999999999999999 59999999999 7899999999998
Q ss_pred cCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCcccc
Q 029969 96 GEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLGT 174 (184)
Q Consensus 96 ~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~GT 174 (184)
.|+ +...++ -| ..+++..|.++|++++|+|++.++++ ++++|+. .||
T Consensus 187 ~e~-----~~~~~~-----------------~~--~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~--------~GT 234 (247)
T PRK14557 187 NDV-----VRQNIQ-----------------VM--DQAALLLARDYNLPAHVFNFDEPGVMRRICLGEH--------VGT 234 (247)
T ss_pred hhh-----cccCHH-----------------HH--HHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCC--------CcE
Confidence 764 111111 12 23677888999999999999999987 7899987 499
Q ss_pred EEEcCcc
Q 029969 175 VIHFSRE 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
+|.+.+.
T Consensus 235 ~i~~~~~ 241 (247)
T PRK14557 235 LINDDAS 241 (247)
T ss_pred EEecCcc
Confidence 9998764
No 46
>PRK09411 carbamate kinase; Reviewed
Probab=99.85 E-value=9.5e-21 Score=160.42 Aligned_cols=129 Identities=26% Similarity=0.347 Sum_probs=103.6
Q ss_pred ceechHHHHHHHHcCCeeEEcCc---eEeeCCCc-eeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceeee
Q 029969 16 PVADLSVVAKTIKSGFVPVLHGD---AVLDDVQG-CAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLLR 91 (184)
Q Consensus 16 ~~~~~~~I~~lL~~G~IPIv~gd---~~~~e~~~-~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li~ 91 (184)
+.++.+.|+.||++|+|||.+|. .+..+..+ ..|+|+|.+|+.||.+|+||+|+|||||+|||++ +.+|++++|+
T Consensus 162 ~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n-~~~p~~~~I~ 240 (297)
T PRK09411 162 KILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYEN-WGTPQQRAIR 240 (297)
T ss_pred ceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCchhhccC-CCCCCCcCCC
Confidence 68899999999999999999833 23222223 5699999999999999999999999999999985 5678889999
Q ss_pred eeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCC-CeEEEEcCCCcCh-hhhhcCCcccCCCC
Q 029969 92 EIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLG-IDVYIVKAASSHS-VKALSGELREKIPD 169 (184)
Q Consensus 92 ~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~g-i~v~I~~g~~~~~-l~~l~Ge~~~~~~~ 169 (184)
+++.++ ++.+ ...+|||.+|+++|.++++.+ .+++|.+ .+. .++|+|+.
T Consensus 241 ~it~~e----------~~~~----------~~~~GgM~pKVeAA~~~v~~~g~~a~I~~---l~~~~~~l~G~~------ 291 (297)
T PRK09411 241 HATPDE----------LAPF----------AKADGAMGPKVTAVSGYVRSRGKPAWIGA---LSRIEETLAGEA------ 291 (297)
T ss_pred CcCHHH----------HHHh----------ccCCCCcHHHHHHHHHHHHhCCCeEEECC---hhHHHHHHCCCC------
Confidence 998865 3333 236899999999999888864 5688864 344 47899874
Q ss_pred CccccEEE
Q 029969 170 DWLGTVIH 177 (184)
Q Consensus 170 ~~~GT~i~ 177 (184)
||+|.
T Consensus 292 ---GT~I~ 296 (297)
T PRK09411 292 ---GTCIS 296 (297)
T ss_pred ---CeEEe
Confidence 99985
No 47
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.84 E-value=8.4e-21 Score=156.20 Aligned_cols=124 Identities=22% Similarity=0.289 Sum_probs=103.2
Q ss_pred ceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeee
Q 029969 16 PVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIA 94 (184)
Q Consensus 16 ~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~ 94 (184)
..++.+.++.+|++|+|||++|. .|..++++|.+|+++|..|+|++++|+|||||||++|| .+|+++++++|+
T Consensus 106 ~~~~~~~l~~~l~~g~ipV~~g~------~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~ 179 (231)
T cd04254 106 EPYIRRRAIRHLEKGRVVIFAGG------TGNPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLT 179 (231)
T ss_pred cccCHHHHHHHHHCCCEEEEECC------cCCCCCCcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEec
Confidence 45778999999999999999953 23456799999999999999999999999999999999 679999999999
Q ss_pred ccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCccc
Q 029969 95 VGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLG 173 (184)
Q Consensus 95 ~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~G 173 (184)
..|. ++ . |...-++.++..|.+.|++++|+++++++++ ++|+|+. .|
T Consensus 180 ~~~~---------~~-~--------------~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~--------~G 227 (231)
T cd04254 180 YDEV---------LS-K--------------GLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEG--------VG 227 (231)
T ss_pred HHHH---------Hh-c--------------chhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCC--------CC
Confidence 8653 11 1 0012367788888889999999999999987 7899986 49
Q ss_pred cEEE
Q 029969 174 TVIH 177 (184)
Q Consensus 174 T~i~ 177 (184)
|+|.
T Consensus 228 T~i~ 231 (231)
T cd04254 228 TLIS 231 (231)
T ss_pred EEeC
Confidence 9984
No 48
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.84 E-value=1.1e-20 Score=156.19 Aligned_cols=121 Identities=24% Similarity=0.290 Sum_probs=102.2
Q ss_pred CCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeee---chhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCc
Q 029969 12 GGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAIL---SGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNA 87 (184)
Q Consensus 12 ~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~---s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~ 87 (184)
.|++..++.+.|+.++++|+|||++|+...++.+..+++ ++|.+|+++|..|+|++|+++|||+|||++|| .+|++
T Consensus 108 ~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a 187 (239)
T cd04261 108 KARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKA 187 (239)
T ss_pred cceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCc
Confidence 477778889999999999999999998444444556777 89999999999999999999999999999999 67899
Q ss_pred eeeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 88 VLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 88 ~li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
+++++|+++|+ .++. -.|.+..|++++..+.++|++++|.|++.+
T Consensus 188 ~~i~~i~~~ea----------~~l~-----------~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~ 232 (239)
T cd04261 188 RKLDEISYDEM----------LEMA-----------SLGAKVLHPRSVELAKKYGVPLRVLSSFSE 232 (239)
T ss_pred eEccccCHHHH----------HHHH-----------hccccccCHHHHHHHHHcCCeEEEecCCCC
Confidence 99999998763 3331 025567889999999999999999998754
No 49
>PRK12354 carbamate kinase; Reviewed
Probab=99.84 E-value=1.5e-20 Score=160.22 Aligned_cols=131 Identities=22% Similarity=0.309 Sum_probs=102.4
Q ss_pred eechHHHHHHHHcCCeeEEc-CceE--eeCC-C---ce-eeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCce
Q 029969 17 VADLSVVAKTIKSGFVPVLH-GDAV--LDDV-Q---GC-AILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAV 88 (184)
Q Consensus 17 ~~~~~~I~~lL~~G~IPIv~-gd~~--~~e~-~---~~-~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~ 88 (184)
.++.+.|+.||++|+|||.+ |.++ ..+. . +. .++|+|.+|++||.+++||+|+|||||+|||++ +.+|+++
T Consensus 162 ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~-~~~p~~k 240 (307)
T PRK12354 162 IVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLD-WGKPTQR 240 (307)
T ss_pred eeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecC-CCCCCCe
Confidence 58999999999999987776 2333 2111 1 22 268999999999999999999999999999986 5568889
Q ss_pred eeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCC-eEEEEcCCCcChh-hhhcCCcccC
Q 029969 89 LLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGI-DVYIVKAASSHSV-KALSGELREK 166 (184)
Q Consensus 89 li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi-~v~I~~g~~~~~l-~~l~Ge~~~~ 166 (184)
+|++++.+| ++.+ .+++|||.+|+++|.++++.|. +++|.+ .+.+ ++|+|+.
T Consensus 241 ~i~~it~~e----------~~~~----------~f~~GgM~pKV~AA~~~~~~gg~~viI~~---~~~l~~al~G~~--- 294 (307)
T PRK12354 241 AIAQATPDE----------LREL----------GFAAGSMGPKVEAACEFVRATGKIAGIGS---LEDIQAILAGEA--- 294 (307)
T ss_pred ECCCCCHHH----------HHhh----------CCCcCChHHHHHHHHHHHHhCCCEEEECC---HHHHHHHHCCCC---
Confidence 999998865 3332 4689999999999999887755 587743 3444 7898863
Q ss_pred CCCCccccEEEcCc
Q 029969 167 IPDDWLGTVIHFSR 180 (184)
Q Consensus 167 ~~~~~~GT~i~~~~ 180 (184)
||+|.++.
T Consensus 295 ------GT~I~~~~ 302 (307)
T PRK12354 295 ------GTRISPET 302 (307)
T ss_pred ------ceEEecCC
Confidence 99998754
No 50
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.83 E-value=3.4e-20 Score=152.87 Aligned_cols=123 Identities=20% Similarity=0.270 Sum_probs=101.3
Q ss_pred eechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeec-ccceecCCC-cCCCceeeeeee
Q 029969 17 VADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTD-VLGVYSHPP-TEPNAVLLREIA 94 (184)
Q Consensus 17 ~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltd-VdGVy~~dp-~~p~~~li~~I~ 94 (184)
....+.++.+|++|.|||+.+. .|..++++|.+|++||..++||+|+++|| |||||++|| .+|+++++++|+
T Consensus 108 ~~~~~~i~~ll~~g~VpV~~g~------~g~~~~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~ 181 (233)
T TIGR02075 108 SYIRRKAIKHLEKGKVVIFSGG------TGNPFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETIT 181 (233)
T ss_pred ccCHHHHHHHHHCCCEEEEECC------CCCCCCCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEec
Confidence 3457899999999999998852 23357899999999999999999999999 999999999 679999999999
Q ss_pred ccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCccc
Q 029969 95 VGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLG 173 (184)
Q Consensus 95 ~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~G 173 (184)
..|+ ++ . |-...++.++..|.++|++++|+++++++++ ++|+|+. .|
T Consensus 182 ~~e~---------~~-~--------------~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~--------~G 229 (233)
T TIGR02075 182 YNEA---------LK-K--------------NLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKG--------IG 229 (233)
T ss_pred HHHH---------Hh-c--------------CHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCC--------CC
Confidence 8653 11 0 0012367788888889999999999999987 7899986 49
Q ss_pred cEEE
Q 029969 174 TVIH 177 (184)
Q Consensus 174 T~i~ 177 (184)
|+|.
T Consensus 230 T~i~ 233 (233)
T TIGR02075 230 TLVS 233 (233)
T ss_pred EEeC
Confidence 9984
No 51
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=99.81 E-value=9.9e-20 Score=148.81 Aligned_cols=124 Identities=21% Similarity=0.285 Sum_probs=104.0
Q ss_pred eechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeec-ccceecCCC-cCCCceeeeeee
Q 029969 17 VADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTD-VLGVYSHPP-TEPNAVLLREIA 94 (184)
Q Consensus 17 ~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltd-VdGVy~~dp-~~p~~~li~~I~ 94 (184)
..+.....++|++|.|+|+.|. .+...+++|++|+++|++++||.|+..|+ |||||++|| ++|+++.+++++
T Consensus 112 ~~~~~~A~~~l~~grVvIf~gG------tg~P~fTTDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lt 185 (238)
T COG0528 112 PYSRREAIRHLEKGRVVIFGGG------TGNPGFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLT 185 (238)
T ss_pred ccCHHHHHHHHHcCCEEEEeCC------CCCCCCchHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCC
Confidence 4556777889999999999964 23468999999999999999999999996 999999999 999999999999
Q ss_pred ccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCccc
Q 029969 95 VGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLG 173 (184)
Q Consensus 95 ~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~G 173 (184)
+.|+ ++..++- -+..|...+.+++++++++|.+.++++ +++.|+.. |
T Consensus 186 y~e~-----l~~~l~v-------------------mD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~--------g 233 (238)
T COG0528 186 YDEV-----LKIGLKV-------------------MDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEV--------G 233 (238)
T ss_pred HHHH-----HHhcCee-------------------ecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCC--------c
Confidence 9875 1111111 256788899999999999999999987 67999874 9
Q ss_pred cEEEc
Q 029969 174 TVIHF 178 (184)
Q Consensus 174 T~i~~ 178 (184)
|+|.+
T Consensus 234 T~V~~ 238 (238)
T COG0528 234 TIVEP 238 (238)
T ss_pred eEecC
Confidence 99863
No 52
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.81 E-value=1.7e-19 Score=149.57 Aligned_cols=119 Identities=23% Similarity=0.298 Sum_probs=97.1
Q ss_pred CCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeee---chhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCce
Q 029969 13 GNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAIL---SGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAV 88 (184)
Q Consensus 13 g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~---s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~ 88 (184)
|++..++.+.|+.+++.|+|||++|+...++.+..+++ ++|.+|+++|..|+|++++|+|||+|||++|| .+|+++
T Consensus 114 ~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~ 193 (244)
T cd04260 114 AKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNAR 193 (244)
T ss_pred eeeeccCHHHHHHHHhCCCEEEecCCcccCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCe
Confidence 67778899999999999999999998544443445677 68999999999999999999999999999999 668999
Q ss_pred eeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCC
Q 029969 89 LLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAAS 152 (184)
Q Consensus 89 li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~ 152 (184)
+|++|+++|+ .++.. . |.-..|..++..+.+.+++++|.+++.
T Consensus 194 ~i~~i~~~e~----------~~l~~---------~--g~~v~~~~a~~~~~~~~i~v~I~~~~~ 236 (244)
T cd04260 194 ILDVVSYNEV----------FQMAH---------Q--GAKVIHPRAVEIAMQANIPIRIRSTMS 236 (244)
T ss_pred EcccCCHHHH----------HHHHH---------c--CchhcCHHHHHHHHHcCCeEEEecCCC
Confidence 9999998763 22210 0 112356788888999999999999864
No 53
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.79 E-value=4.1e-19 Score=145.84 Aligned_cols=119 Identities=22% Similarity=0.231 Sum_probs=97.2
Q ss_pred CcceechHHHHHHHHc-CCeeEEcCceEeeCCCceeee---chhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCce
Q 029969 14 NLPVADLSVVAKTIKS-GFVPVLHGDAVLDDVQGCAIL---SGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAV 88 (184)
Q Consensus 14 ~v~~~~~~~I~~lL~~-G~IPIv~gd~~~~e~~~~~~~---s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~ 88 (184)
.+...+.+.|+.+++. |.|||++|+...++.+..+++ ++|.+|+++|..|+|++|+|+|||+|||+.|| .+|+++
T Consensus 96 ~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~ 175 (227)
T cd04234 96 RIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEAR 175 (227)
T ss_pred hHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCce
Confidence 4667789999999999 999999996554444445555 68999999999999999999999999999999 678999
Q ss_pred eeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 89 LLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 89 li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
++++++++|+ .++. ....+.| ++.++..+.++|++++|.+++.+
T Consensus 176 ~i~~i~~~e~----------~~l~---------~~G~~~~--~~~a~~~a~~~~i~i~i~~~~~~ 219 (227)
T cd04234 176 LIPEISYDEA----------LELA---------YFGAKVL--HPRAVEPARKANIPIRVKNTFNP 219 (227)
T ss_pred EcCcCCHHHH----------HHHH---------hCCcccc--CHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999998763 2221 1134444 67899999999999999998754
No 54
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.78 E-value=2.5e-18 Score=151.78 Aligned_cols=129 Identities=19% Similarity=0.259 Sum_probs=100.4
Q ss_pred HHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceeeeeeeccCCCCcc
Q 029969 23 VAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLLREIAVGEDGSWS 102 (184)
Q Consensus 23 I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li~~I~~~e~~~~~ 102 (184)
|+.+|++|+|||+++.+... .+..+|+|+|++|..||.+|+|++|||+||++|||+. +++++++|+..+.
T Consensus 122 I~~~L~~g~IPVlsplg~~~-~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~-----~g~~i~~i~~~~e---- 191 (398)
T PRK04531 122 VESSLRAGSIPVIASLGETP-SGQILNINADVAANELVSALQPYKIIFLTGTGGLLDA-----DGKLISSINLSTE---- 191 (398)
T ss_pred HHHHHHCCCEEEEeCcEECC-CCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC-----CCCCcccCCHHHH----
Confidence 88899999999999888643 2336799999999999999999999999999999975 4789999986321
Q ss_pred cchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCccccEEEcCc
Q 029969 103 ITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLGTVIHFSR 180 (184)
Q Consensus 103 ~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~GT~i~~~~ 180 (184)
.+.+. ...+++|||++||++|..+++....+++++...++.+ ..|-++.- .||.|+..+
T Consensus 192 -----~~~l~-------~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~~Ll~eLft~~G-------~GT~I~~g~ 251 (398)
T PRK04531 192 -----YDHLM-------QQPWINGGMKLKLEQIKELLDRLPLESSVSITSPSDLAKELFTHKG-------SGTLVRRGE 251 (398)
T ss_pred -----HHHHH-------hcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCCHHHHHHccCCC-------CCeEEecCC
Confidence 22221 1257999999999999999975445888888888875 44433321 499998744
No 55
>PRK06635 aspartate kinase; Reviewed
Probab=99.75 E-value=8.1e-18 Score=148.35 Aligned_cols=119 Identities=25% Similarity=0.280 Sum_probs=98.3
Q ss_pred CCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeee---chhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCce
Q 029969 13 GNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAIL---SGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAV 88 (184)
Q Consensus 13 g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~---s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~ 88 (184)
|++..++.+.|+.+++.|.|||++|+...++.+..+++ ++|.+|+++|..|+|++++++|||+|||++|| .+|+++
T Consensus 111 ~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~ 190 (404)
T PRK06635 111 ARITDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKAR 190 (404)
T ss_pred eEeeecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCce
Confidence 67778889999999999999999996444444455666 88999999999999999999999999999999 779999
Q ss_pred eeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCC
Q 029969 89 LLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAAS 152 (184)
Q Consensus 89 li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~ 152 (184)
++++++++|+ .++. ..|....+..++..+.+.|++++|.+++.
T Consensus 191 ~i~~i~~~e~----------~~l~-----------~~g~~~~~~~a~~~~~~~~i~~~i~~~~~ 233 (404)
T PRK06635 191 KLDKISYEEM----------LELA-----------SLGAKVLHPRSVEYAKKYNVPLRVRSSFS 233 (404)
T ss_pred ECCccCHHHH----------HHHH-----------HcCCcccCHHHHHHHHHcCceEEEEcCCC
Confidence 9999999763 2221 11344567788889999999999998863
No 56
>PLN02825 amino-acid N-acetyltransferase
Probab=99.75 E-value=7.8e-18 Score=152.50 Aligned_cols=152 Identities=14% Similarity=0.197 Sum_probs=114.7
Q ss_pred cceeeccCCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcC
Q 029969 5 SCGWSTSGGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTE 84 (184)
Q Consensus 5 ~~~~~~~~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~ 84 (184)
++||. |+|+++|.+.|+.+|++|+|||+++.+++. .+..+|+++|++|..+|.+|+|+||||+||++ ++++
T Consensus 147 D~g~v---G~V~~Vd~~~i~~~L~~g~Ipvisplg~s~-~Ge~~NinaD~vA~avA~aL~A~KLI~ltd~~-~~~~---- 217 (515)
T PLN02825 147 DFGAT---GEVKKIDVSRIKERLDSNCIVLLSNLGYSS-SGEVLNCNTYEVATACALAIGADKLICIVDGP-ILDE---- 217 (515)
T ss_pred cccce---eeEEEEcHHHHHHHHhCCCeEEECCceECC-CCCEEeeCHHHHHHHHHHHcCCCeEEEEeCcc-eecC----
Confidence 55555 999999999999999999999999999864 34579999999999999999999999999977 5554
Q ss_pred CCceeeeeeeccCCCCcccchhHHHhhcc------c---------------hh----------------hh---------
Q 029969 85 PNAVLLREIAVGEDGSWSITKPTLQHMNN------Q---------------VE----------------IT--------- 118 (184)
Q Consensus 85 p~~~li~~I~~~e~~~~~~~~~~l~~~~~------~---------------~~----------------~~--------- 118 (184)
+++++++++.+|+ +..+++-.. . .. ..
T Consensus 218 -~g~li~~l~~~e~------~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (515)
T PLN02825 218 -NGRLIRFMTLEEA------DMLIRKRAKQSEIAANYVKAVGGEDYSYSLGLDSVNTTPFNNNGRGFWGSGSATDSFQNG 290 (515)
T ss_pred -CCCCcCcCCHHHH------HHHHHhhhhcchhhhhhhhhcccccccccccccccccccccccccccccccccccccccc
Confidence 4789999999875 333332000 0 00 00
Q ss_pred ----------ccccc---------ccCchHHHHHHHHHHHHCCCe-EEEEcCCCcChh--hhhcCCcccCCCCCccccEE
Q 029969 119 ----------VAAHD---------TTGGMVTKISEAAMIAKLGID-VYIVKAASSHSV--KALSGELREKIPDDWLGTVI 176 (184)
Q Consensus 119 ----------~~~~~---------vtGgm~~Kl~aa~~a~~~gi~-v~I~~g~~~~~l--~~l~Ge~~~~~~~~~~GT~i 176 (184)
..+.+ -+.+...||.+|..|++.|++ +|+++++.++.+ +.++-+. .||.|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg--------~gt~i 362 (515)
T PLN02825 291 VGFDNGNGLSGEQGFAIGGEERLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDG--------MGTMI 362 (515)
T ss_pred ccccCcccccccccccccchhhchhhhhHHHHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCC--------ceeEe
Confidence 00001 112345679999999999997 999999999974 6787666 49999
Q ss_pred EcCc
Q 029969 177 HFSR 180 (184)
Q Consensus 177 ~~~~ 180 (184)
..+.
T Consensus 363 ~~~~ 366 (515)
T PLN02825 363 ASDM 366 (515)
T ss_pred ccCh
Confidence 8654
No 57
>PRK08210 aspartate kinase I; Reviewed
Probab=99.75 E-value=1e-17 Score=147.90 Aligned_cols=119 Identities=20% Similarity=0.235 Sum_probs=96.0
Q ss_pred CCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeee---chhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCce
Q 029969 13 GNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAIL---SGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAV 88 (184)
Q Consensus 13 g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~---s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~ 88 (184)
|++..++.+.|+.+++.|.|||++|+...++.+..+++ ++|.+|+.||..|+|++++|+|||+|||++|| ..|+++
T Consensus 116 ~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~ 195 (403)
T PRK08210 116 AKIIEVNPDRILEALEEGDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDAR 195 (403)
T ss_pred eeeehhhHHHHHHHHhcCCEEEeeCeeecCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCe
Confidence 67778899999999999999999998444443344555 68999999999999999999999999999999 678999
Q ss_pred eeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCC
Q 029969 89 LLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAAS 152 (184)
Q Consensus 89 li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~ 152 (184)
++++++++|+ .++... |.-..+.+++..|.+.+++++|.|...
T Consensus 196 ~i~~ls~~ea-------~~l~~~--------------G~~v~~~~a~~~~~~~~i~i~i~~~~~ 238 (403)
T PRK08210 196 LLDVVSYNEV-------FQMAYQ--------------GAKVIHPRAVEIAMQANIPLRIRSTYS 238 (403)
T ss_pred ECCccCHHHH-------HHHHHC--------------CccccCHHHHHHHHHCCCeEEEEecCC
Confidence 9999999774 222211 112245678888999999999998763
No 58
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.73 E-value=2.6e-17 Score=145.02 Aligned_cols=121 Identities=21% Similarity=0.237 Sum_probs=96.2
Q ss_pred CCcceech-HHHHHHHHcCCeeEEcCceEeeCCCceeee---chhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCc
Q 029969 13 GNLPVADL-SVVAKTIKSGFVPVLHGDAVLDDVQGCAIL---SGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNA 87 (184)
Q Consensus 13 g~v~~~~~-~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~---s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~ 87 (184)
+++..++. +.|+.+++.|.|||++|+...++.+...++ ++|..|+.+|..|+|++|+++|||+|||++|| .+|++
T Consensus 111 ~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a 190 (401)
T TIGR00656 111 AKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAA 190 (401)
T ss_pred eEeeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCc
Confidence 56667777 999999999999999985433332223333 57999999999999999999999999999999 67999
Q ss_pred eeeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcC
Q 029969 88 VLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSH 154 (184)
Q Consensus 88 ~li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~ 154 (184)
++++++++.|+ .++.. .|...-+.+++..|.+.+++++|.|++.|+
T Consensus 191 ~~i~~ls~~ea-------~~l~~--------------~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~ 236 (401)
T TIGR00656 191 KRIDKISYEEA-------LELAT--------------FGAKVLHPRTVEPAMRSGVPIEVRSSFDPE 236 (401)
T ss_pred EECCccCHHHH-------HHHHH--------------cCCcccCHHHHHHHHHCCCeEEEEECCCCC
Confidence 99999999874 22211 133355778889999999999999987553
No 59
>PRK08841 aspartate kinase; Validated
Probab=99.71 E-value=9.3e-17 Score=141.65 Aligned_cols=119 Identities=19% Similarity=0.233 Sum_probs=97.7
Q ss_pred CCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeee---chhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCce
Q 029969 13 GNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAIL---SGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAV 88 (184)
Q Consensus 13 g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~---s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~ 88 (184)
+++..++.+.|+.+++.|.|||++|..-.++.+..+++ ++|..|+.+|..|+|+.++++|||||||++|| .+|+++
T Consensus 111 ~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~ 190 (392)
T PRK08841 111 ATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNAR 190 (392)
T ss_pred ceechhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCce
Confidence 66777889999999999999999985322333334455 78999999999999999999999999999999 789999
Q ss_pred eeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCC
Q 029969 89 LLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAAS 152 (184)
Q Consensus 89 li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~ 152 (184)
++++|++.|+ .++. -.|.+.-+.+++..|.++|++++|.+...
T Consensus 191 ~i~~is~~ea----------~ela-----------~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~ 233 (392)
T PRK08841 191 KLDVIDFPSM----------EAMA-----------RKGAKVLHLPSVQHAWKHSVPLRVLSSFE 233 (392)
T ss_pred EcccccHHHH----------HHHH-----------hcCccccCHHHHHHHHHCCCeEEEEecCC
Confidence 9999999763 2221 12555667899999999999999998763
No 60
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.70 E-value=1.3e-16 Score=137.49 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=91.9
Q ss_pred eechHHHHHHHHcCCeeEEcCceEeeCCCceeee----chhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeee
Q 029969 17 VADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAIL----SGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLR 91 (184)
Q Consensus 17 ~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~----s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~ 91 (184)
..+...+..+++.|.|||++|+.. ++ .|.... ++|.+|+.+|..|+|+.++++|||+|||++|| ..|++++++
T Consensus 144 ~~~~~~l~~~l~~g~IpVv~Gf~~-~~-~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~ 221 (327)
T TIGR02078 144 KRNAKILYEVLESGKIPVIPGFYG-NL-NGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIP 221 (327)
T ss_pred HhhHHHHHHHHhCCcEEEEeCCcc-CC-CCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEcc
Confidence 456788899999999999998765 33 343222 67999999999999999999999999999999 779999999
Q ss_pred eeeccCCCCcccchhHHHhhccchhhhcccccccCchH-HHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 92 EIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMV-TKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 92 ~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~-~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
+++++|+ + .+ ...||+ .+..++..+.+.|++++|.|...+
T Consensus 222 ~lsy~Ea---------~-el------------a~~Gakvlhp~a~~~a~~~~Ipi~I~~t~~~ 262 (327)
T TIGR02078 222 YLSYEEI---------K-IA------------AKLGMKALQWKAADLAKEYKIPVLFGRTRDW 262 (327)
T ss_pred ccCHHHH---------H-HH------------HHCCchhhHHHHHHHHHHCCCeEEEEeCCCc
Confidence 9999774 1 22 123675 678888999999999999987643
No 61
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.70 E-value=1.6e-16 Score=141.79 Aligned_cols=118 Identities=22% Similarity=0.244 Sum_probs=94.9
Q ss_pred cceechHHHHHHHHcCCeeEEcCceEeeCCCceeee---chhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceee
Q 029969 15 LPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAIL---SGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLL 90 (184)
Q Consensus 15 v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~---s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li 90 (184)
+..++.+.|..+++.|.|||++|+...++.+...++ .+|.+|+.+|..|+|++|+++|||+|||++|| ..|+++++
T Consensus 153 ~~~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i 232 (441)
T TIGR00657 153 IIEILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRI 232 (441)
T ss_pred cHhhhHHHHHHHHhcCCEEEEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeEC
Confidence 567789999999999999999996443333223333 57999999999999999999999999999999 67899999
Q ss_pred eeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 91 REIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 91 ~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
++++++|+ .+|.. .|.+..+.+++..+.+.+++++|.|+..|
T Consensus 233 ~~is~~ea-------~el~~--------------~G~~v~~~~a~~~~~~~~i~i~i~~~~~~ 274 (441)
T TIGR00657 233 DEISYEEM-------LELAS--------------FGAKVLHPRTLEPAMRAKIPIVVKSTFNP 274 (441)
T ss_pred CccCHHHH-------HHHHh--------------cCCcccCHHHHHHHHHcCCeEEEecCCCC
Confidence 99999874 12211 23345677888899999999999998754
No 62
>PRK07431 aspartate kinase; Provisional
Probab=99.69 E-value=2e-16 Score=145.77 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=94.3
Q ss_pred CCcceechHHHHHHHHcCCeeEEcCc-eEe-eCCCceee---echhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCC
Q 029969 13 GNLPVADLSVVAKTIKSGFVPVLHGD-AVL-DDVQGCAI---LSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPN 86 (184)
Q Consensus 13 g~v~~~~~~~I~~lL~~G~IPIv~gd-~~~-~e~~~~~~---~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~ 86 (184)
|++..++.+.|+.+++.|.|||++|. +.. ...+..++ ..+|..|++||..|+|++++++|||||||++|| .+|+
T Consensus 111 ~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~ 190 (587)
T PRK07431 111 ARILEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPE 190 (587)
T ss_pred eeeeeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCC
Confidence 66777888999999999999999974 332 11111222 257999999999999999999999999999999 7789
Q ss_pred ceeeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCC
Q 029969 87 AVLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAA 151 (184)
Q Consensus 87 ~~li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~ 151 (184)
+++|++++++|+ .++. ...+++|. ++++..+.+.|++++|.++.
T Consensus 191 a~~i~~i~~~e~----------~el~---------~~G~~v~~--~~a~~~~~~~~i~i~i~~~~ 234 (587)
T PRK07431 191 AQLMDEISCDEM----------LELA---------SLGASVLH--PRAVEIARNYGVPLVVRSSW 234 (587)
T ss_pred CeECCCcCHHHH----------HHHH---------hCCCceEh--HHHHHHHHHcCCcEEEecCC
Confidence 999999999763 2221 23456776 68999999999999999876
No 63
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.68 E-value=1.6e-16 Score=128.75 Aligned_cols=120 Identities=28% Similarity=0.398 Sum_probs=92.1
Q ss_pred chHHHHHHHHcCCeeEEcCceEe---eCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceeeeeeec
Q 029969 19 DLSVVAKTIKSGFVPVLHGDAVL---DDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLLREIAV 95 (184)
Q Consensus 19 ~~~~I~~lL~~G~IPIv~gd~~~---~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li~~I~~ 95 (184)
+...+..++..|.|||+.|-... ++....+++++|++|+++|..|+|++|+++|||||||++ +++++++|+.
T Consensus 80 ~~~~~~~~~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~-----da~~i~~i~~ 154 (203)
T cd04240 80 TLAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEK-----DGKLVNEIAA 154 (203)
T ss_pred CHHHHHHHHHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCC-----CCcCccccCH
Confidence 35788999999999999976552 223335799999999999999999999999999999986 3889999987
Q ss_pred cCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChh-hhhcCCcccCCCCCcccc
Q 029969 96 GEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSV-KALSGELREKIPDDWLGT 174 (184)
Q Consensus 96 ~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l-~~l~Ge~~~~~~~~~~GT 174 (184)
.++ ... ...| +|. +..+.+.|++++|++++.++++ ++|+|+.. .||
T Consensus 155 ~e~----------~~~--------~~id---~~~-----~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~-------~GT 201 (203)
T cd04240 155 AEL----------LGE--------TSVD---PAF-----PRLLTKYGIRCYVVNGDDPERVLAALRGREG-------VGT 201 (203)
T ss_pred HHh----------CCC--------Ceeh---hhH-----HHHHHhCCCeEEEECCCCccHHHHHHCCCCC-------CCC
Confidence 653 110 0011 133 3446788999999999999986 78998721 488
Q ss_pred EE
Q 029969 175 VI 176 (184)
Q Consensus 175 ~i 176 (184)
+|
T Consensus 202 ~I 203 (203)
T cd04240 202 RI 203 (203)
T ss_pred CC
Confidence 75
No 64
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.66 E-value=4.2e-16 Score=130.44 Aligned_cols=134 Identities=25% Similarity=0.342 Sum_probs=107.1
Q ss_pred ceechHHHHHHHHcCCeeEEc-CceEe--eCCC---c-eeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCce
Q 029969 16 PVADLSVVAKTIKSGFVPVLH-GDAVL--DDVQ---G-CAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAV 88 (184)
Q Consensus 16 ~~~~~~~I~~lL~~G~IPIv~-gd~~~--~e~~---~-~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~ 88 (184)
+-++.+.|+.|+++|.++|.+ |.++. .+.. | -.+++.|..+++||++++||.|++|||||+||-+ ...|+.+
T Consensus 170 ~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n-~gkp~q~ 248 (312)
T COG0549 170 RIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVN-FGKPNQQ 248 (312)
T ss_pred cchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheec-CCCccch
Confidence 457799999999999999999 44553 3322 3 2589999999999999999999999999999984 6667889
Q ss_pred eeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCC-eEEEEcCCCcChh-hhhcCCcccC
Q 029969 89 LLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGI-DVYIVKAASSHSV-KALSGELREK 166 (184)
Q Consensus 89 li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi-~v~I~~g~~~~~l-~~l~Ge~~~~ 166 (184)
-+++++.+|+ ++.+. ..++..|+|.+|++||..+.+++- +++|.+- +.+ .+|+|+.
T Consensus 249 ~L~~v~~~e~------~~yl~----------eg~Fa~GSM~PKVeAai~Fv~~~gk~A~ItsL---e~~~~~l~g~~--- 306 (312)
T COG0549 249 ALDRVTVDEM------EKYLA----------EGQFAAGSMGPKVEAAISFVENTGKPAIITSL---ENAEAALEGKA--- 306 (312)
T ss_pred hhcccCHHHH------HHHHh----------cCCCCCCCccHHHHHHHHHHHcCCCceEECcH---HHHHHHhccCC---
Confidence 9999999773 23332 357899999999999999988854 4888643 344 6899976
Q ss_pred CCCCccccEEEc
Q 029969 167 IPDDWLGTVIHF 178 (184)
Q Consensus 167 ~~~~~~GT~i~~ 178 (184)
||.|.+
T Consensus 307 ------GT~I~~ 312 (312)
T COG0549 307 ------GTVIVP 312 (312)
T ss_pred ------CcEecC
Confidence 999874
No 65
>PRK08373 aspartate kinase; Validated
Probab=99.65 E-value=1.1e-15 Score=132.55 Aligned_cols=111 Identities=21% Similarity=0.262 Sum_probs=90.9
Q ss_pred echHHHHHHHHcCCeeEEcCceEeeCCCceeee----chhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeee
Q 029969 18 ADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAIL----SGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLRE 92 (184)
Q Consensus 18 ~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~----s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~ 92 (184)
.+.+.+..+++.|.|||++|+.. +. .|.... ++|..|+.||..|+|++++++|||+|||++|| ..|+++++++
T Consensus 155 ~~~~~l~~~l~~g~VpVv~Gf~g-~~-~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~ 232 (341)
T PRK08373 155 RNVKILYELLERGRVPVVPGFIG-NL-NGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPY 232 (341)
T ss_pred hhHHHHHHHHhCCcEEEEeCCcc-CC-CCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEccc
Confidence 45688999999999999999765 32 343322 56999999999999999999999999999999 6799999999
Q ss_pred eeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCC
Q 029969 93 IAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAAS 152 (184)
Q Consensus 93 I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~ 152 (184)
++++|+ .++ ..+||+.+...|...++.+++++|.+...
T Consensus 233 isy~Ea----------~el------------a~~Gakvlhp~ai~~a~~~Ipi~v~~t~~ 270 (341)
T PRK08373 233 LSYDEA----------LIA------------AKLGMKALHWKAIEPVKGKIPIIFGRTRD 270 (341)
T ss_pred CCHHHH----------HHH------------HHCcChhhhHHHHHHHHcCCcEEEecCCC
Confidence 999874 222 35688888888887766699999987653
No 66
>PRK06291 aspartate kinase; Provisional
Probab=99.63 E-value=3e-15 Score=134.66 Aligned_cols=111 Identities=22% Similarity=0.240 Sum_probs=91.0
Q ss_pred HHHHHHHcCCeeEEcCceEeeCCCceeee---chhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeeccC
Q 029969 22 VVAKTIKSGFVPVLHGDAVLDDVQGCAIL---SGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAVGE 97 (184)
Q Consensus 22 ~I~~lL~~G~IPIv~gd~~~~e~~~~~~~---s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~~e 97 (184)
.++.+++.|.|||++|..-.++.+...++ ++|..|+.+|..|+|+.++++|||+|||+.|| .+|++++++++++.|
T Consensus 180 ~~~~ll~~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~e 259 (465)
T PRK06291 180 RLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIE 259 (465)
T ss_pred HHHHHhhcCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHH
Confidence 57778899999999985333333334455 88999999999999999999999999999999 779999999999976
Q ss_pred CCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 98 DGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
+ .++. ..|.+..+.+++..+.+.+++++|.+++.|
T Consensus 260 a----------~~l~-----------~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~ 294 (465)
T PRK06291 260 A----------MELS-----------YFGAKVLHPRTIEPAMEKGIPVRVKNTFNP 294 (465)
T ss_pred H----------HHHH-----------hCCCcccCHHHHHHHHHcCCcEEEecCCCC
Confidence 4 2221 135677889999999999999999998765
No 67
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.59 E-value=8e-15 Score=125.15 Aligned_cols=109 Identities=20% Similarity=0.254 Sum_probs=88.2
Q ss_pred HHHHHHcCCeeEEcCc-eEeeCCCceeee---chhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeeccC
Q 029969 23 VAKTIKSGFVPVLHGD-AVLDDVQGCAIL---SGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAVGE 97 (184)
Q Consensus 23 I~~lL~~G~IPIv~gd-~~~~e~~~~~~~---s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~~e 97 (184)
+..+++.|.|||++|- +.. +.+...++ .+|..|+.+|..|+|+.++++|||+|||+.|| .+|+++++++++++|
T Consensus 177 l~~ll~~~~vpVv~Gfig~~-~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~E 255 (298)
T cd04244 177 LLPMLEDGKIPVVTGFIGAT-EDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAE 255 (298)
T ss_pred HHHHhhcCCEEEEeCccccC-CCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHH
Confidence 5567889999999983 443 22234455 77999999999999999999999999999999 679999999999987
Q ss_pred CCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 98 DGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
+ .++. -.|++.-+.+++..|.+++++++|.|++.|
T Consensus 256 a-------~el~--------------~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~p 290 (298)
T cd04244 256 A-------MELA--------------YFGAKVLHPRTVEPAMEKGIPVRVKNTFNP 290 (298)
T ss_pred H-------HHHH--------------hCCCcccCHHHHHHHHHcCCcEEEeeCCCC
Confidence 4 2221 125667788899999999999999998754
No 68
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.49 E-value=1.6e-13 Score=122.90 Aligned_cols=116 Identities=28% Similarity=0.332 Sum_probs=88.4
Q ss_pred cceechHH-HHHHHHcCCeeEEcCc-eEeeCCCc-eeeech--hHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCce
Q 029969 15 LPVADLSV-VAKTIKSGFVPVLHGD-AVLDDVQG-CAILSG--DVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAV 88 (184)
Q Consensus 15 v~~~~~~~-I~~lL~~G~IPIv~gd-~~~~e~~~-~~~~s~--D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~ 88 (184)
+...+.+. +..+++.|.|||+.|- +. ++.+. .+...| |..|+.||..|+||++-++|||||||+.|| ..|+++
T Consensus 158 i~~~~~~~~l~~~~~~~~v~Vv~GF~G~-~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar 236 (447)
T COG0527 158 ILDEDSERRLLRLLEEGKVPVVAGFQGI-NEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDAR 236 (447)
T ss_pred cchhhhhhhHHHHhcCCcEEEecCceee-cCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcce
Confidence 33455666 8889999999999983 33 33222 344454 999999999999999999999999999999 789999
Q ss_pred eeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchH-HHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 89 LLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMV-TKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 89 li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~-~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
+|++|+++|+ .+|..+ |++ --.++...+.+.+++++|-|...|
T Consensus 237 ~i~~isyeEa-------~ELA~~---------------GAkVLHprav~pa~~~~Ip~~i~~t~~p 280 (447)
T COG0527 237 LLPEISYEEA-------LELAYL---------------GAKVLHPRAVEPAMRSGIPLRIKNTFNP 280 (447)
T ss_pred EcCccCHHHH-------HHHHHC---------------CchhcCHHHHHHHHhcCCcEEEEecCCC
Confidence 9999999885 233222 211 123566788899999999987654
No 69
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.49 E-value=2.9e-13 Score=115.47 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=88.1
Q ss_pred hHHHHHHHHc-CCeeEEcCceEeeCCCc-eee--echhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeee
Q 029969 20 LSVVAKTIKS-GFVPVLHGDAVLDDVQG-CAI--LSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIA 94 (184)
Q Consensus 20 ~~~I~~lL~~-G~IPIv~gd~~~~e~~~-~~~--~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~ 94 (184)
...|...++. +.|||+.|-.-.++.+. ... ..+|..|+.+|..++|+.++++|||+|||+.|| ..|+++++++++
T Consensus 170 ~~~l~~~l~~~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~ls 249 (295)
T cd04259 170 DALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLD 249 (295)
T ss_pred HHHHHHHHhcCCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEeceeC
Confidence 4567766665 67999998532222222 222 356999999999999999999999999999999 679999999999
Q ss_pred ccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 95 VGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 95 ~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
++|+ .++. ..|++.-+.+++..+.+++++++|.+++.|
T Consensus 250 ~~ea----------~~l~-----------~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p 287 (295)
T cd04259 250 YDEA----------QEIA-----------TMGAKVLHPRCIPPARRANIPMVVRSTERP 287 (295)
T ss_pred HHHH----------HHHH-----------HcCCcccCHHHHHHHHHCCCCEEEEeCCCC
Confidence 9874 2221 245677788999999999999999998754
No 70
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=99.48 E-value=3e-13 Score=115.00 Aligned_cols=116 Identities=18% Similarity=0.119 Sum_probs=88.4
Q ss_pred eechHHHHHHHHcCCeeEEcCceEeeCCCceeee---chhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeee
Q 029969 17 VADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAIL---SGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLRE 92 (184)
Q Consensus 17 ~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~---s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~ 92 (184)
....+.+.++++.+.|||+.|-.-.+..+....+ .+|..|+.+|..|+|+.+.++|||+|||+.|| ..|+++.+++
T Consensus 161 ~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~ 240 (288)
T cd04245 161 PESYQKIKKLRDSDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISE 240 (288)
T ss_pred hhhHHHHHHHHhCCCEEEEeCccccCCCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCc
Confidence 3467888888999999999985322222233444 66999999999999999999999999999999 7799999999
Q ss_pred eeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 93 IAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 93 I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
++++|+ .+|.. ....-|.+ .+...|.+++++++|.|.+.|
T Consensus 241 lsy~EA-------~ela~------------~GakVlhp--~ai~~a~~~~Ipi~v~n~~~p 280 (288)
T cd04245 241 MTYREM-------RELSY------------AGFSVFHD--EALIPAIEAGIPINIKNTNHP 280 (288)
T ss_pred cCHHHH-------HHHHH------------CCCcccCH--HHHHHHHHCCCcEEEeeCCCC
Confidence 999885 22211 12222334 466788999999999988754
No 71
>PRK05925 aspartate kinase; Provisional
Probab=99.45 E-value=4.3e-13 Score=120.01 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=80.7
Q ss_pred HHHcCCeeEEcCc-eEeeCCCcee--eechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeeccCCCCc
Q 029969 26 TIKSGFVPVLHGD-AVLDDVQGCA--ILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAVGEDGSW 101 (184)
Q Consensus 26 lL~~G~IPIv~gd-~~~~e~~~~~--~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~~e~~~~ 101 (184)
.++.+.|||+.|- +...+..-.. ...+|..|+++|..++||.++++|||+|||+.|| ..|++++|++++++|+
T Consensus 161 ~~~~~~v~Vv~GF~g~~~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea--- 237 (440)
T PRK05925 161 ALQEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEM--- 237 (440)
T ss_pred hccCCcEEEecCcceeCCCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHH---
Confidence 5567789999985 4332211122 3466999999999999999999999999999999 7799999999999774
Q ss_pred ccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcC
Q 029969 102 SITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSH 154 (184)
Q Consensus 102 ~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~ 154 (184)
.++... ......++| ...|.+.|++++|.|++.|+
T Consensus 238 ----~ela~~--------Ga~vl~~~~------~~~a~~~~Ipi~I~~~~~p~ 272 (440)
T PRK05925 238 ----QNLASF--------GAKVLHPPM------LKPCVRAGIPIFVTSTFDVT 272 (440)
T ss_pred ----HHHHhC--------CCCcCCHHH------HHHHHHCCCcEEEecCCCCC
Confidence 222111 123344444 47788899999999998664
No 72
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.44 E-value=6.5e-13 Score=113.19 Aligned_cols=112 Identities=23% Similarity=0.275 Sum_probs=83.4
Q ss_pred HHHHHHHHc-CCeeEEcCceEeeCCCce-eeec--hhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeec
Q 029969 21 SVVAKTIKS-GFVPVLHGDAVLDDVQGC-AILS--GDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAV 95 (184)
Q Consensus 21 ~~I~~lL~~-G~IPIv~gd~~~~e~~~~-~~~s--~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~ 95 (184)
..++.+++. +.|||+.|....++.+.. .... +|..|+.+|..++|+.++++|||||||++|| .+|++++++++++
T Consensus 169 ~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~ 248 (293)
T cd04243 169 ERLAQLLAEHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSY 248 (293)
T ss_pred HHHHHHHhcCCCEEEecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCH
Confidence 478888887 999999997443322222 2333 4999999999999999999999999999999 7799999999999
Q ss_pred cCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 96 GEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 96 ~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
.|+ .++... ...-+ -..+...+.+++++++|.|++.|
T Consensus 249 ~ea-------~~l~~~------------Gakvl--~p~ai~~a~~~~i~i~i~~~~~p 285 (293)
T cd04243 249 DEA-------MELAYF------------GAKVL--HPRTIQPAIRKNIPIFIKNTFNP 285 (293)
T ss_pred HHH-------HHHHhC------------CCccc--CHHHHHHHHHCCCcEEEecCCCC
Confidence 874 222111 11111 22445788999999999998754
No 73
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=99.43 E-value=3.8e-13 Score=114.69 Aligned_cols=109 Identities=29% Similarity=0.279 Sum_probs=82.3
Q ss_pred hHHHHHHHHc-CCeeEEcCceEeeCCCceeeec----hhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeee
Q 029969 20 LSVVAKTIKS-GFVPVLHGDAVLDDVQGCAILS----GDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREI 93 (184)
Q Consensus 20 ~~~I~~lL~~-G~IPIv~gd~~~~e~~~~~~~s----~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I 93 (184)
...++.++.. +.|||++|....+. .|....- +|..|+++|..++|+.++++|||||||+.|| .+|+++++++|
T Consensus 169 ~~~l~~~~~~~~~v~Vv~Gfig~~~-~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~i 247 (294)
T cd04257 169 KERIKAWFSSNGKVIVVTGFIASNP-QGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSL 247 (294)
T ss_pred HHHHHHHHhcCCCEEEecCcccCCC-CCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEecee
Confidence 4567776776 99999999744332 2322222 3999999999999999999999999999999 77999999999
Q ss_pred eccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHH---HHHHHHCCCeEEEEcCCCc
Q 029969 94 AVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISE---AAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 94 ~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~a---a~~a~~~gi~v~I~~g~~~ 153 (184)
+++|+ .++.. -| .|+.+ ...+.+++++++|.|+..|
T Consensus 248 s~~ea-------~~l~~---------------~G--akv~h~~~~~~a~~~~Ipi~i~~~~~p 286 (294)
T cd04257 248 SYQEA-------MELSY---------------FG--AKVLHPKTIQPVAKKNIPILIKNTFNP 286 (294)
T ss_pred CHHHH-------HHHHh---------------CC--CcccCHHHHHHHHHCCCCEEEeeCCCC
Confidence 99874 11211 11 24444 4488999999999998754
No 74
>PRK09084 aspartate kinase III; Validated
Probab=99.41 E-value=1.6e-12 Score=116.62 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=81.9
Q ss_pred HHHHHHHHcCCeeEEcCceEeeCCCcee-e--echhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeecc
Q 029969 21 SVVAKTIKSGFVPVLHGDAVLDDVQGCA-I--LSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAVG 96 (184)
Q Consensus 21 ~~I~~lL~~G~IPIv~gd~~~~e~~~~~-~--~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~~ 96 (184)
..+..+++.+ +||++|....++.+... . ..+|..|+.+|..|+|+.++++|||||||+.|| ..|+++++++|+++
T Consensus 166 ~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ 244 (448)
T PRK09084 166 EQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFE 244 (448)
T ss_pred HHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHH
Confidence 4566677888 99999864433322222 2 256999999999999999999999999999999 78999999999998
Q ss_pred CCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcC
Q 029969 97 EDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSH 154 (184)
Q Consensus 97 e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~ 154 (184)
|+ .+|..+ |.-.-...+...+.+.+++++|.+...|+
T Consensus 245 ea-------~ela~~--------------Ga~vlh~~~~~~~~~~~i~i~i~~~~~~~ 281 (448)
T PRK09084 245 EA-------AEMATF--------------GAKVLHPATLLPAVRSNIPVFVGSSKDPE 281 (448)
T ss_pred HH-------HHHHhC--------------CCcccCHHHHHHHHHcCCcEEEEeCCCCC
Confidence 74 222211 11011224456788899999999987653
No 75
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=99.38 E-value=4.3e-12 Score=108.74 Aligned_cols=114 Identities=22% Similarity=0.157 Sum_probs=83.2
Q ss_pred cCCeeEEcCceEeeCCCc-eeeec--hhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeeccCCCCcccc
Q 029969 29 SGFVPVLHGDAVLDDVQG-CAILS--GDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAVGEDGSWSIT 104 (184)
Q Consensus 29 ~G~IPIv~gd~~~~e~~~-~~~~s--~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~~e~~~~~~~ 104 (184)
.+.|||+.|-.-.+..+. .+... +|..|+++|..|+|+.++++|||+|||+.|| .+|++++|++|+++|+
T Consensus 189 ~~~v~Vv~GFig~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea------ 262 (306)
T cd04247 189 ENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEA------ 262 (306)
T ss_pred CCceEEeeccEecCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHH------
Confidence 578999998533332222 23333 4999999999999999999999999999999 7899999999999874
Q ss_pred hhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChhhhhcCCcccCCCCCccccEEEcC
Q 029969 105 KPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSVKALSGELREKIPDDWLGTVIHFS 179 (184)
Q Consensus 105 ~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~l~Ge~~~~~~~~~~GT~i~~~ 179 (184)
.++... ...-+ -.++...|++.+++++|.|...|. . .||+|.|+
T Consensus 263 -~el~~~------------GakVl--Hp~ti~pa~~~~Ipi~i~nt~~P~--------~--------~GT~I~~~ 306 (306)
T cd04247 263 -AELTYY------------GSEVI--HPFTMEQVIKARIPIRIKNVENPR--------G--------EGTVIYPD 306 (306)
T ss_pred -HHHHhC------------cCccc--CHHHHHHHHHcCCcEEEecCCCCC--------C--------CCcEEcCC
Confidence 122111 11112 235667888999999999876442 1 39999874
No 76
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.37 E-value=2.9e-12 Score=122.86 Aligned_cols=114 Identities=25% Similarity=0.246 Sum_probs=89.2
Q ss_pred chHHHHHHHHcC-CeeEEcCc-eEeeCCCceee--echhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeee
Q 029969 19 DLSVVAKTIKSG-FVPVLHGD-AVLDDVQGCAI--LSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREI 93 (184)
Q Consensus 19 ~~~~I~~lL~~G-~IPIv~gd-~~~~e~~~~~~--~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I 93 (184)
+...++.+++.+ .|||+.|- +...+..-.+. ..+|..|+.+|..|+|++++++|||+|||++|| ..|++++++++
T Consensus 178 ~~~~~~~~~~~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~l 257 (861)
T PRK08961 178 DPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRL 257 (861)
T ss_pred HHHHHHHHhccCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEeccc
Confidence 445667777766 49999985 44322211233 356999999999999999999999999999999 77999999999
Q ss_pred eccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 94 AVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 94 ~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
++.|+ .++. ..|++..+.+++..|.+.|++++|.++..+
T Consensus 258 s~~e~----------~el~-----------~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~ 296 (861)
T PRK08961 258 DYDEA----------QEIA-----------TTGAKVLHPRSIKPCRDAGIPMAILDTERP 296 (861)
T ss_pred CHHHH----------HHHH-----------HCCCeEECHHHHHHHHHCCCCEEEEeCCCC
Confidence 99774 2221 246778899999999999999999998755
No 77
>PRK09034 aspartate kinase; Reviewed
Probab=99.35 E-value=6e-12 Score=113.09 Aligned_cols=116 Identities=19% Similarity=0.114 Sum_probs=85.9
Q ss_pred eechHHHHHHHHcCCeeEEcCceEeeCCCc-eeee--chhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeee
Q 029969 17 VADLSVVAKTIKSGFVPVLHGDAVLDDVQG-CAIL--SGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLRE 92 (184)
Q Consensus 17 ~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~-~~~~--s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~ 92 (184)
......+..++..+.|||+.|-.-.+..+. .+.. .+|..|+.+|..|+|+.+.++|||+|||+.|| ..|+++.+++
T Consensus 161 ~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~ 240 (454)
T PRK09034 161 PESYDNLKKLRDRDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKE 240 (454)
T ss_pred HhhHHHHHHHHhcCCEEEecCccccCCCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCc
Confidence 345677777777888999998522222222 2333 34999999999999999999999999999999 7799999999
Q ss_pred eeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 93 IAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 93 I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
++++|+ .+|.. .+..-|.+ .+...|.+.+++++|.|...|
T Consensus 241 lsy~Ea-------~ela~------------~Gakvlhp--~ai~~a~~~~Ipi~v~~~~~p 280 (454)
T PRK09034 241 ITYREM-------RELSY------------AGFSVFHD--EALIPAYRGGIPINIKNTNNP 280 (454)
T ss_pred cCHHHH-------HHHHh------------CCcccCCH--HHHHHHHHcCCCEEEEcCCCC
Confidence 999885 22221 12222334 466788999999999988654
No 78
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.34 E-value=7.2e-12 Score=119.59 Aligned_cols=113 Identities=25% Similarity=0.282 Sum_probs=86.0
Q ss_pred HHHHHHH-HcCCeeEEcCceEeeCCCce-eeec--hhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeec
Q 029969 21 SVVAKTI-KSGFVPVLHGDAVLDDVQGC-AILS--GDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAV 95 (184)
Q Consensus 21 ~~I~~lL-~~G~IPIv~gd~~~~e~~~~-~~~s--~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~ 95 (184)
..++.++ +.+.|||++|..-.+..+.. +... +|..|+++|..++|+.++++|||||||+.|| .+|++++++++++
T Consensus 172 ~~i~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy 251 (819)
T PRK09436 172 RRIAASFIPADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSY 251 (819)
T ss_pred HHHHHHHhcCCcEEEecCcccCCCCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecH
Confidence 3455544 46889999986433322222 2222 3999999999999999999999999999999 7899999999999
Q ss_pred cCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcC
Q 029969 96 GEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSH 154 (184)
Q Consensus 96 ~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~ 154 (184)
.|+ .++. ..|-+..+.+++..|.+++++++|.|+..|+
T Consensus 252 ~ea-------~el~--------------~~G~kvlhp~a~~~a~~~~Ipi~i~n~~~p~ 289 (819)
T PRK09436 252 QEA-------MELS--------------YFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQ 289 (819)
T ss_pred HHH-------HHHH--------------hcCCccchHHHHHHHHHCCceEEEccCCCCC
Confidence 874 1221 1234556889999999999999999987553
No 79
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=99.26 E-value=4.3e-11 Score=102.01 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=77.2
Q ss_pred HHcCCeeEEcCceEeeCCCce-e--eechhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeeccCCCCcc
Q 029969 27 IKSGFVPVLHGDAVLDDVQGC-A--ILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAVGEDGSWS 102 (184)
Q Consensus 27 L~~G~IPIv~gd~~~~e~~~~-~--~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~~e~~~~~ 102 (184)
+..+.|||+.|-.-.+..+.. + ...+|..|+.+|..|+|+.++++|||+|||+.|| .+|+++++++|+++|+
T Consensus 175 ~~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea---- 250 (292)
T cd04258 175 LLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEA---- 250 (292)
T ss_pred hhcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHH----
Confidence 346789999985322222122 2 2345999999999999999999999999999999 7899999999999875
Q ss_pred cchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 103 ITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 103 ~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
.+|..+ ...-+ -.++...+.+.+++++|.|...|
T Consensus 251 ---~ela~~------------Gakvl--hp~a~~~~~~~~ipi~i~~~~~p 284 (292)
T cd04258 251 ---AEMATF------------GAKVL--HPATLLPAIRKNIPVFVGSSKDP 284 (292)
T ss_pred ---HHHHHC------------CCccc--CHHHHHHHHHcCCcEEEEeCCCC
Confidence 222211 11112 23556788889999999987644
No 80
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=99.24 E-value=2e-11 Score=96.60 Aligned_cols=121 Identities=26% Similarity=0.310 Sum_probs=91.7
Q ss_pred HHHHHcCCeeEEcCceEe---eCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceeeeeeeccCCCC
Q 029969 24 AKTIKSGFVPVLHGDAVL---DDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLLREIAVGEDGS 100 (184)
Q Consensus 24 ~~lL~~G~IPIv~gd~~~---~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li~~I~~~e~~~ 100 (184)
+.-.+.+.+||+-|-.+. |.....+-+.+|.++.++|.++++.++|++|||||+|+.+| .++++++|..+|+
T Consensus 87 ~~~i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~---~~kLv~eI~A~dl-- 161 (212)
T COG2054 87 EDGIKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDP---KGKLVREIRASDL-- 161 (212)
T ss_pred hhccCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCC---cchhhhhhhHhhc--
Confidence 445667788888864442 22223577899999999999999999999999999999865 4589999999874
Q ss_pred cccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcCh-hhhhcCCcccCCCCCccccEEEcC
Q 029969 101 WSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHS-VKALSGELREKIPDDWLGTVIHFS 179 (184)
Q Consensus 101 ~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~-l~~l~Ge~~~~~~~~~~GT~i~~~ 179 (184)
+. ..+.-.+..+++ +.+.+++++++||+.|.+ ++++.|+.. .||+|.+.
T Consensus 162 --------~~----------~~t~vD~~~P~L-----l~k~~m~~~Vvng~~pervi~~lrGk~~-------v~T~Ivg~ 211 (212)
T COG2054 162 --------KT----------GETSVDPYLPKL-----LVKYKMNCRVVNGKEPERVILALRGKEV-------VGTLIVGG 211 (212)
T ss_pred --------cc----------CcccccchhhHH-----HHHcCCceEEECCCCHHHHHHHHhcccc-------ceEEEeCC
Confidence 21 012223344544 677899999999999998 589999764 69999874
No 81
>PLN02551 aspartokinase
Probab=99.23 E-value=6.2e-11 Score=108.12 Aligned_cols=105 Identities=18% Similarity=0.157 Sum_probs=77.9
Q ss_pred HcCCeeEEcCc-eEeeCCCc-eeeech--hHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeeccCCCCcc
Q 029969 28 KSGFVPVLHGD-AVLDDVQG-CAILSG--DVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAVGEDGSWS 102 (184)
Q Consensus 28 ~~G~IPIv~gd-~~~~e~~~-~~~~s~--D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~~e~~~~~ 102 (184)
+.+.|||+.|- +.....+. .+...+ |..|+.+|..|+|+.+-++|||+|||+.|| ..|+++.+++++++|+
T Consensus 230 ~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea---- 305 (521)
T PLN02551 230 DDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEA---- 305 (521)
T ss_pred cCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHH----
Confidence 35689999984 43312222 334443 999999999999999999999999999999 7899999999999885
Q ss_pred cchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 103 ITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 103 ~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
.+|..+ +..-+.+ ++...|++.+++++|-|...|
T Consensus 306 ---~elA~~------------GakVlhp--~ai~pa~~~~Ipi~vknt~~p 339 (521)
T PLN02551 306 ---AELAYF------------GAQVLHP--QSMRPAREGDIPVRVKNSYNP 339 (521)
T ss_pred ---HHHHhC------------CCcccCH--HHHHHHHHCCceEEEEecCCC
Confidence 223221 2222333 566788999999999887544
No 82
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=99.15 E-value=2.3e-10 Score=109.16 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=83.2
Q ss_pred hHHHHHHHHcC--CeeEEcCceEeeCCCc-eeeec--hhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeee
Q 029969 20 LSVVAKTIKSG--FVPVLHGDAVLDDVQG-CAILS--GDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREI 93 (184)
Q Consensus 20 ~~~I~~lL~~G--~IPIv~gd~~~~e~~~-~~~~s--~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I 93 (184)
...++.++..+ .+||+.|..-.++.+. .+... +|..|+.+|..|+|+.+.++|||+|||+.|| ..|+++++++|
T Consensus 173 ~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~i 252 (810)
T PRK09466 173 YPLLQQLLAQHPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLL 252 (810)
T ss_pred HHHHHHHHhccCCeEEEeeCccccCCCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccC
Confidence 46777777654 7999998632232222 23333 3999999999999999999999999999999 77999999999
Q ss_pred eccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 94 AVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 94 ~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
+++|+ .+|..+ ...-+.+ ++...+.+.+++++|.|...|
T Consensus 253 sy~Ea-------~ela~~------------GakVlHp--~ti~pa~~~~Ipi~V~ntf~p 291 (810)
T PRK09466 253 RLDEA-------SELARL------------AAPVLHA--RTLQPVSGSDIDLQLRCSYQP 291 (810)
T ss_pred CHHHH-------HHHHHc------------CccccCH--HHHHHHHHcCCeEEEecCCCC
Confidence 99885 223221 2222333 556788999999999987644
No 83
>PRK09181 aspartate kinase; Validated
Probab=99.02 E-value=2.1e-09 Score=97.14 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=81.4
Q ss_pred hHHHHHHHH----cCCeeEEcCceEeeCCCc-eeeech--hHHHHHHHHhcCCCEEEEeecccceecCCC-cC--CCcee
Q 029969 20 LSVVAKTIK----SGFVPVLHGDAVLDDVQG-CAILSG--DVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TE--PNAVL 89 (184)
Q Consensus 20 ~~~I~~lL~----~G~IPIv~gd~~~~e~~~-~~~~s~--D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~--p~~~l 89 (184)
...++..++ .+.|||+.|-. .++.+. .+...+ |..|+.+|..|+|+.+-++|||+ ||+.|| .. |+++.
T Consensus 182 ~~~i~~~l~~~~~~~~v~Vv~GF~-~~~~G~itTLGRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~ 259 (475)
T PRK09181 182 DERIKKAFKDIDVTKELPIVTGYA-KCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVP 259 (475)
T ss_pred HHHHHHHHhhhccCCcEEEecCCc-CCCCCCEEecCCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeE
Confidence 456676666 48899999864 332222 334444 99999999999999999999997 999999 55 68999
Q ss_pred eeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 90 LREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 90 i~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
|++|+++|+ .+|..+ +..-+.+ ++...|++.+++++|.|...|
T Consensus 260 i~~lsy~Ea-------~ELA~~------------GAkVLHp--~ti~pa~~~~Ipi~V~nt~~p 302 (475)
T PRK09181 260 IGRTNYDVA-------DQLANL------------GMEAIHP--KAAKGLRQAGIPLRIKNTFEP 302 (475)
T ss_pred cCccCHHHH-------HHHHHc------------CchhcCH--HHHHHHHHcCCeEEEecCCCC
Confidence 999999885 223221 1111222 566788999999999987644
No 84
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=98.91 E-value=1e-08 Score=87.67 Aligned_cols=111 Identities=10% Similarity=0.090 Sum_probs=79.6
Q ss_pred hHHHHHHHH----cCCeeEEcCceEeeCCCc-eeeec--hhHHHHHHHHhcCCCEEEEeecccceecCCC-cC--CCcee
Q 029969 20 LSVVAKTIK----SGFVPVLHGDAVLDDVQG-CAILS--GDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TE--PNAVL 89 (184)
Q Consensus 20 ~~~I~~lL~----~G~IPIv~gd~~~~e~~~-~~~~s--~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~--p~~~l 89 (184)
.+.+...+. .+.|||+.|-+- ...+. .+... +|..|+.+|..++|+.+.++|||+ ||+.|| .. |+++.
T Consensus 176 ~~~i~~~~~~~~~~~~v~IvtGF~~-~~~G~itTLGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~ 253 (304)
T cd04248 176 DERISEAFRDIDPRDELPIVTGYAK-CAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARP 253 (304)
T ss_pred HHHHHHHHHhhccCCcEEEeCCccC-CCCCCEEEcCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceE
Confidence 455555555 578999998632 22222 23333 399999999999999999999995 999999 55 58999
Q ss_pred eeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCc
Q 029969 90 LREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASS 153 (184)
Q Consensus 90 i~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~ 153 (184)
|++++++|+ .+|..+ +..-+. .+++..+.+.+++++|-|...|
T Consensus 254 i~~lsY~EA-------~ELA~~------------GakvLH--P~ai~pa~~~~IPi~Vkntf~P 296 (304)
T cd04248 254 IGRTNYDVA-------DQLANL------------GMEAIH--PKAAKGLRQAGIPLRVKNTFEP 296 (304)
T ss_pred eCccCHHHH-------HHHHHc------------ChhhcC--HHHHHHHHHcCCeEEEecCCCC
Confidence 999999885 233322 111122 3567788999999999987643
No 85
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=98.35 E-value=5.2e-07 Score=80.98 Aligned_cols=108 Identities=17% Similarity=0.270 Sum_probs=79.8
Q ss_pred CCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEeecccceecCCCcCCCceeeee
Q 029969 13 GNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLTDVLGVYSHPPTEPNAVLLRE 92 (184)
Q Consensus 13 g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp~~p~~~li~~ 92 (184)
|.|.+++.+.|+++++.|.+|++..-+-+. .+..+|+++|++|..+|..|+|+++++++|+ |...+ .+++.++.
T Consensus 219 gei~~vd~d~i~~l~~~G~mp~L~sla~Ta-SGqvlnvNa~~~a~elA~~L~~~kli~l~d~-g~~l~----e~ge~~S~ 292 (520)
T KOG2436|consen 219 GEIKKVDVDRIRHLLDAGSMPLLRSLAATA-SGQVLNVNADEVAGELALALGPDKLILLMDK-GRILK----ENGEDISS 292 (520)
T ss_pred cccceechhhhhhhhhCCCchhehhhcccC-ccceEEeeHHHHhhHHHhccCcceeEEeccc-ccccc----cCcccccc
Confidence 899999999999999999999999765542 2346899999999999999999999999998 54332 15667777
Q ss_pred eeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHH
Q 029969 93 IAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIA 139 (184)
Q Consensus 93 I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~ 139 (184)
+..++.. ..+.+.. ....++++|..++..+..+.
T Consensus 293 l~l~~e~------~~l~k~~-------qq~~~a~~~v~aV~~~~~~~ 326 (520)
T KOG2436|consen 293 LILQEED------AGLRKPS-------QQKNIAANNVKAVKDGIDSS 326 (520)
T ss_pred cccchhH------hhhhhhh-------hhcccccccchhhhhheeec
Confidence 7766541 2233321 12457777777777666553
No 86
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=98.32 E-value=4.4e-07 Score=79.62 Aligned_cols=114 Identities=21% Similarity=0.172 Sum_probs=78.7
Q ss_pred cCCeeEEcCc---eEeeCCCceeeec--hhHHHHHHHHhcCCCEEEEeecccceecCCC-cCCCceeeeeeeccCCCCcc
Q 029969 29 SGFVPVLHGD---AVLDDVQGCAILS--GDVIIRHLAAYMKPDYVVFLTDVLGVYSHPP-TEPNAVLLREIAVGEDGSWS 102 (184)
Q Consensus 29 ~G~IPIv~gd---~~~~e~~~~~~~s--~D~iA~~lA~~l~Ad~li~ltdVdGVy~~dp-~~p~~~li~~I~~~e~~~~~ 102 (184)
...+||+.|- +|.. ..-..+.. +|..|+.+|.+|++|.+-.+.|||||+++|| +.|.+.+++-++++|+
T Consensus 258 en~VPVvTGf~Gk~~~t-g~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEA---- 332 (559)
T KOG0456|consen 258 ENAVPVVTGFLGKGWPT-GALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEA---- 332 (559)
T ss_pred CCccceEeeccccCccc-cceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHH----
Confidence 4789999962 2321 00012333 4999999999999999999999999999999 9999999999999986
Q ss_pred cchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEEcCCCcChhhhhcCCcccCCCCCccccEEEcCc
Q 029969 103 ITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIVKAASSHSVKALSGELREKIPDDWLGTVIHFSR 180 (184)
Q Consensus 103 ~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~l~Ge~~~~~~~~~~GT~i~~~~ 180 (184)
.+|..+- ++.. ....+..+.+..+|+.|-|-..|. | +||+|.|++
T Consensus 333 ---aELaYfG--------aqVl------HP~sM~~~~~~~IPvRvKN~~NP~------~----------~GTvI~~d~ 377 (559)
T KOG0456|consen 333 ---AELAYFG--------AQVL------HPFSMRPAREGRIPVRVKNSYNPT------A----------PGTVITPDR 377 (559)
T ss_pred ---HHHHhhh--------hhhc------cccccchhhccCcceEeecCCCCC------C----------CceEeccch
Confidence 3343320 1111 112344566667888887654331 1 489888875
No 87
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=83.98 E-value=2.2 Score=33.62 Aligned_cols=56 Identities=25% Similarity=0.344 Sum_probs=33.4
Q ss_pred EEeecccceecCCCcCCCceeeeeeeccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHCCCeEEEE
Q 029969 69 VFLTDVLGVYSHPPTEPNAVLLREIAVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKLGIDVYIV 148 (184)
Q Consensus 69 i~ltdVdGVy~~dp~~p~~~li~~I~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~gi~v~I~ 148 (184)
++++|||||+++ ++++-.-.-++ ++.+ .+..|+- ....++.|+++-|+
T Consensus 10 Lli~DVDGvLTD------G~ly~~~~Gee----------~KaF-----------nv~DG~G-----ik~l~~~Gi~vAII 57 (170)
T COG1778 10 LLILDVDGVLTD------GKLYYDENGEE----------IKAF-----------NVRDGHG-----IKLLLKSGIKVAII 57 (170)
T ss_pred EEEEeccceeec------CeEEEcCCCce----------eeee-----------eccCcHH-----HHHHHHcCCeEEEE
Confidence 456899999995 55543222222 3333 2333432 24467789998888
Q ss_pred cCCCcChh
Q 029969 149 KAASSHSV 156 (184)
Q Consensus 149 ~g~~~~~l 156 (184)
.||+...+
T Consensus 58 TGr~s~iv 65 (170)
T COG1778 58 TGRDSPIV 65 (170)
T ss_pred eCCCCHHH
Confidence 88876654
No 88
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=77.09 E-value=7 Score=30.61 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=10.6
Q ss_pred EEeecccceecCC
Q 029969 69 VFLTDVLGVYSHP 81 (184)
Q Consensus 69 i~ltdVdGVy~~d 81 (184)
.+++|+|||++++
T Consensus 9 ~~v~d~dGv~tdg 21 (169)
T TIGR02726 9 LVILDVDGVMTDG 21 (169)
T ss_pred EEEEeCceeeECC
Confidence 4678999999964
No 89
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.96 E-value=31 Score=27.99 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=37.4
Q ss_pred EEEEee---cccceecCCCcCCCceeeeee--eccCCCCcccchhHHHhhccchhhhcccccccCchHHHHHHHHHHHHC
Q 029969 67 YVVFLT---DVLGVYSHPPTEPNAVLLREI--AVGEDGSWSITKPTLQHMNNQVEITVAAHDTTGGMVTKISEAAMIAKL 141 (184)
Q Consensus 67 ~li~lt---dVdGVy~~dp~~p~~~li~~I--~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~vtGgm~~Kl~aa~~a~~~ 141 (184)
++=|.| |++++.+-+| +++.+-+. +++++ ++.. +..|.....-|+||..++++
T Consensus 26 ~lef~TK~~nv~~Ll~l~~---~~~t~~rfSlnp~~I---------i~~~----------E~~T~sl~~Rl~Aa~k~a~a 83 (199)
T TIGR00620 26 KLRFVTKFHHVDHLLDAKH---NGKTRFRFSINADYV---------IKNF----------EPGTSPLDKRIEAAVKVAKA 83 (199)
T ss_pred EEEEEEcccchhhHhcCCC---CCCEEEEEEeCHHHH---------HHHh----------cCCCCCHHHHHHHHHHHHHc
Confidence 455655 7888887544 23344444 44332 2222 45677788899999999999
Q ss_pred CCeEE
Q 029969 142 GIDVY 146 (184)
Q Consensus 142 gi~v~ 146 (184)
|.+|.
T Consensus 84 Gy~Vg 88 (199)
T TIGR00620 84 GYPLG 88 (199)
T ss_pred CCeEE
Confidence 98854
No 90
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=37.83 E-value=38 Score=23.13 Aligned_cols=28 Identities=25% Similarity=0.164 Sum_probs=24.8
Q ss_pred eechhHHHHHHHHhcCCC-EEEEeecccc
Q 029969 49 ILSGDVIIRHLAAYMKPD-YVVFLTDVLG 76 (184)
Q Consensus 49 ~~s~D~iA~~lA~~l~Ad-~li~ltdVdG 76 (184)
..+.|++...++.+|..+ .++-|||..|
T Consensus 19 ~~s~dev~~~v~~Al~~~~~~l~LtD~kG 47 (74)
T PF11305_consen 19 DQSADEVEAAVTDALADGSGVLTLTDEKG 47 (74)
T ss_pred CCCHHHHHHHHHHHHhCCCceEEEEeCCC
Confidence 356799999999999998 9999999877
No 91
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=36.08 E-value=1.2e+02 Score=22.87 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=15.5
Q ss_pred EEeecccceecCCC--cCCCceeeeeee
Q 029969 69 VFLTDVLGVYSHPP--TEPNAVLLREIA 94 (184)
Q Consensus 69 i~ltdVdGVy~~dp--~~p~~~li~~I~ 94 (184)
++++|.||++.+.. -.++++.++.+.
T Consensus 3 ~~~~D~Dgtl~~~~~~~~~~~~~~~~~~ 30 (154)
T TIGR01670 3 LLILDVDGVLTDGKIYYTNNGEEIKAFN 30 (154)
T ss_pred EEEEeCceeEEcCeEEECCCCcEEEEEe
Confidence 46789999887532 223345555553
No 92
>PLN03017 trehalose-phosphatase
Probab=32.23 E-value=1.5e+02 Score=26.43 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=22.4
Q ss_pred chhHHHHHHHHhcCCCEEEEeecccceec
Q 029969 51 SGDVIIRHLAAYMKPDYVVFLTDVLGVYS 79 (184)
Q Consensus 51 s~D~iA~~lA~~l~Ad~li~ltdVdGVy~ 79 (184)
|+-.....++...+..++++++|.||=+.
T Consensus 95 sal~~~~~~~~~~~~k~~llflD~DGTL~ 123 (366)
T PLN03017 95 SALEMFEQIMEASRGKQIVMFLDYDGTLS 123 (366)
T ss_pred hHHHHHHHHHHHhcCCCeEEEEecCCcCc
Confidence 44455566777778889999999999776
No 93
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=30.91 E-value=1.5e+02 Score=22.89 Aligned_cols=14 Identities=36% Similarity=0.600 Sum_probs=11.3
Q ss_pred EEEEeecccceecC
Q 029969 67 YVVFLTDVLGVYSH 80 (184)
Q Consensus 67 ~li~ltdVdGVy~~ 80 (184)
.=++++|+||++.+
T Consensus 21 ikli~~D~Dgtl~~ 34 (183)
T PRK09484 21 IRLLICDVDGVFSD 34 (183)
T ss_pred ceEEEEcCCeeeec
Confidence 34788899999986
No 94
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=28.92 E-value=1.1e+02 Score=24.79 Aligned_cols=52 Identities=21% Similarity=0.223 Sum_probs=37.2
Q ss_pred ccCCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEee
Q 029969 10 TSGGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLT 72 (184)
Q Consensus 10 ~~~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~lt 72 (184)
++.|.-+..|.+.++++.+.-.+||+.+.++ .+-|.+.. +...+|+.++.-|
T Consensus 163 ~~dGt~~G~d~eli~~i~~~~~~pvia~GGi---------~s~ed~~~--l~~~Ga~~vivgs 214 (221)
T TIGR00734 163 HSVGTMKGPNLELLTKTLELSEHPVMLGGGI---------SGVEDLEL--LKEMGVSAVLVAT 214 (221)
T ss_pred CccccCCCCCHHHHHHHHhhCCCCEEEeCCC---------CCHHHHHH--HHHCCCCEEEEhH
Confidence 3457777889999999999988999996544 34455554 2336888877655
No 95
>PLN02151 trehalose-phosphatase
Probab=28.02 E-value=2.1e+02 Score=25.24 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCCEEEEeecccceec
Q 029969 54 VIIRHLAAYMKPDYVVFLTDVLGVYS 79 (184)
Q Consensus 54 ~iA~~lA~~l~Ad~li~ltdVdGVy~ 79 (184)
.....++...++.+++++.|.||=+.
T Consensus 85 ~~~~~~~~~~~~~~~ll~lDyDGTL~ 110 (354)
T PLN02151 85 NMFEEILHKSEGKQIVMFLDYDGTLS 110 (354)
T ss_pred HHHHHHHHhhcCCceEEEEecCccCC
Confidence 34455666677889999999999876
No 96
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=26.69 E-value=1.3e+02 Score=25.14 Aligned_cols=29 Identities=24% Similarity=0.131 Sum_probs=20.5
Q ss_pred eechhHHHHHHHHhcCCCEEEEeecccce
Q 029969 49 ILSGDVIIRHLAAYMKPDYVVFLTDVLGV 77 (184)
Q Consensus 49 ~~s~D~iA~~lA~~l~Ad~li~ltdVdGV 77 (184)
++.+-.+--....+-|||.++++||+|-+
T Consensus 42 IiPTT~~eIA~raaeGADlvlIATDaD~~ 70 (290)
T COG4026 42 IIPTTNVEIAKRAAEGADLVLIATDADRV 70 (290)
T ss_pred eccCchHHHHHHhhccCCEEEEeecCcch
Confidence 55554444444556689999999998865
No 97
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=25.87 E-value=2.1e+02 Score=22.81 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=46.5
Q ss_pred cCCCcceech----HHHHHHHHcCCeeEEcCceEeeCCCceeeech---hHHHHHHHHhcCCCEEEEeecccceec
Q 029969 11 SGGNLPVADL----SVVAKTIKSGFVPVLHGDAVLDDVQGCAILSG---DVIIRHLAAYMKPDYVVFLTDVLGVYS 79 (184)
Q Consensus 11 ~~g~v~~~~~----~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~---D~iA~~lA~~l~Ad~li~ltdVdGVy~ 79 (184)
.+|+..-++. .....++..-.+|.+.+.... +|..++|| |.+....|...++++++.+.-.+..+.
T Consensus 99 ~tg~~~~f~~~~~~~~~~av~AS~aiP~~f~pv~i---~g~~yvDGGv~~n~Pv~~a~~~g~~~iivv~~~~~~~~ 171 (215)
T cd07209 99 LTGEPVYFDDIPDGILPEHLLASAALPPFFPPVEI---DGRYYWDGGVVDNTPLSPAIDLGADEIIVVSLSDKGRD 171 (215)
T ss_pred CCCCEEEEeCCCcchHHHHHHHhccccccCCCEEE---CCeEEEcCccccCcCHHHHHhcCCCEEEEEECCCcccc
Confidence 4566554443 367788899999999964432 23456776 777788888899999888886665554
No 98
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=25.59 E-value=1.6e+02 Score=23.49 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=31.7
Q ss_pred cCCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEee
Q 029969 11 SGGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLT 72 (184)
Q Consensus 11 ~~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~lt 72 (184)
+.|.-...|.+.++.+.+.-.+||+.+.++ .+.+.+..++ ..+|+.+++-|
T Consensus 169 ~~g~~~g~~~~~i~~i~~~~~ipvia~GGi---------~~~~di~~~~--~~Gadgv~ig~ 219 (230)
T TIGR00007 169 RDGTLSGPNFELTKELVKAVNVPVIASGGV---------SSIDDLIALK--KLGVYGVIVGK 219 (230)
T ss_pred CCCCcCCCCHHHHHHHHHhCCCCEEEeCCC---------CCHHHHHHHH--HCCCCEEEEeH
Confidence 445545567788888877766787775433 3445555433 37888777655
No 99
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=25.29 E-value=68 Score=26.84 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=18.3
Q ss_pred ccCchHHHHHHHHHHHHCCCeEEEEc
Q 029969 124 TTGGMVTKISEAAMIAKLGIDVYIVK 149 (184)
Q Consensus 124 vtGgm~~Kl~aa~~a~~~gi~v~I~~ 149 (184)
.+||...|+++|..+ |++|+++.
T Consensus 208 ~~Gg~~eKi~AA~~l---gi~vivI~ 230 (256)
T TIGR00715 208 EQGGELEKVKAAEAL---GINVIRIA 230 (256)
T ss_pred CccchHHHHHHHHHc---CCcEEEEe
Confidence 368899999877654 99988874
No 100
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=23.99 E-value=40 Score=19.90 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=11.9
Q ss_pred ccceecCCC-cCCCce
Q 029969 74 VLGVYSHPP-TEPNAV 88 (184)
Q Consensus 74 VdGVy~~dp-~~p~~~ 88 (184)
+-|.+.+|| ++|+.+
T Consensus 20 iFGflsnDP~RnP~rk 35 (38)
T PRK02655 20 VFGFLSSDPTRNPGRK 35 (38)
T ss_pred HcccCCCCCCCCCCcc
Confidence 568888899 888765
No 101
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=23.63 E-value=56 Score=16.74 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=14.1
Q ss_pred ccCCCcceechHHHHHHH
Q 029969 10 TSGGNLPVADLSVVAKTI 27 (184)
Q Consensus 10 ~~~g~v~~~~~~~I~~lL 27 (184)
+.+|.|..+|...+++.|
T Consensus 3 N~DG~vna~D~~~lk~yl 20 (21)
T PF00404_consen 3 NGDGKVNAIDLALLKKYL 20 (21)
T ss_dssp TSSSSSSHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHh
Confidence 457899998888887765
No 102
>CHL00024 psbI photosystem II protein I
Probab=22.75 E-value=45 Score=19.52 Aligned_cols=15 Identities=27% Similarity=0.634 Sum_probs=11.4
Q ss_pred ccceecCCC-cCCCce
Q 029969 74 VLGVYSHPP-TEPNAV 88 (184)
Q Consensus 74 VdGVy~~dp-~~p~~~ 88 (184)
+.|.+.+|| ++|+.+
T Consensus 20 ifGFlsnDp~RnP~rk 35 (36)
T CHL00024 20 IFGFLSNDPGRNPGRK 35 (36)
T ss_pred HccccCCCCCCCCCCC
Confidence 568888889 888653
No 103
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=22.52 E-value=1.8e+02 Score=23.76 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=20.1
Q ss_pred ccCCCcceechHHHHHHHHcCCeeEEcCc
Q 029969 10 TSGGNLPVADLSVVAKTIKSGFVPVLHGD 38 (184)
Q Consensus 10 ~~~g~v~~~~~~~I~~lL~~G~IPIv~gd 38 (184)
++.|.-+..|.+.++++.+.-.+||+.+.
T Consensus 169 ~~~g~~~G~d~~~i~~i~~~~~ipviasG 197 (241)
T PRK14024 169 TKDGTLTGPNLELLREVCARTDAPVVASG 197 (241)
T ss_pred cCCCCccCCCHHHHHHHHhhCCCCEEEeC
Confidence 34455556678888888877778888743
No 104
>PLN02580 trehalose-phosphatase
Probab=21.50 E-value=2.7e+02 Score=24.85 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=21.4
Q ss_pred hHHHHHHHHhcCCCEEEEeecccceec
Q 029969 53 DVIIRHLAAYMKPDYVVFLTDVLGVYS 79 (184)
Q Consensus 53 D~iA~~lA~~l~Ad~li~ltdVdGVy~ 79 (184)
-.....|+..-++.+++++.|.||-+.
T Consensus 105 l~~~~~~~~~~~~k~~~LfLDyDGTLa 131 (384)
T PLN02580 105 LTSFEQIANFAKGKKIALFLDYDGTLS 131 (384)
T ss_pred HHHHHHHHHHhhcCCeEEEEecCCccC
Confidence 344456777888899999999999886
No 105
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.37 E-value=2.1e+02 Score=22.93 Aligned_cols=50 Identities=20% Similarity=0.103 Sum_probs=30.9
Q ss_pred CCCcceechHHHHHHHHcCCeeEEcCceEeeCCCceeeechhHHHHHHHHhcCCCEEEEee
Q 029969 12 GGNLPVADLSVVAKTIKSGFVPVLHGDAVLDDVQGCAILSGDVIIRHLAAYMKPDYVVFLT 72 (184)
Q Consensus 12 ~g~v~~~~~~~I~~lL~~G~IPIv~gd~~~~e~~~~~~~s~D~iA~~lA~~l~Ad~li~lt 72 (184)
+|.....|.+.++.+.+.-.+||+.+.++ .+.+.+.. ....+|+.++.-|
T Consensus 174 ~g~~~g~~~~~i~~i~~~~~iPvia~GGI---------~~~~di~~--~~~~Ga~gv~vgs 223 (241)
T PRK13585 174 EGLLEGVNTEPVKELVDSVDIPVIASGGV---------TTLDDLRA--LKEAGAAGVVVGS 223 (241)
T ss_pred CCCcCCCCHHHHHHHHHhCCCCEEEeCCC---------CCHHHHHH--HHHcCCCEEEEEH
Confidence 45555567777888877777888775333 23344443 2556777766654
Done!