BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029970
         (184 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NAS|A Chain A, Sepiapterin Reductase Complexed With N-acetyl Serotonin
 pdb|1OAA|A Chain A, Mouse Sepiapterin Reductase Complexed With Nadp And
           Oxaloacetate
          Length = 259

 Score = 31.2 bits (69), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 27/63 (42%)

Query: 1   MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
           MLRQ  + +G  Q      +  A     AG+   +SAV E  RP   Q LL      T+ 
Sbjct: 45  MLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLG 104

Query: 61  PVS 63
            VS
Sbjct: 105 DVS 107


>pdb|1SEP|A Chain A, Mouse Sepiapterin Reductase Complexed With Nadp And
           Sepiapterin
          Length = 261

 Score = 31.2 bits (69), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 27/63 (42%)

Query: 1   MLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVN 60
           MLRQ  + +G  Q      +  A     AG+   +SAV E  RP   Q LL      T+ 
Sbjct: 47  MLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLG 106

Query: 61  PVS 63
            VS
Sbjct: 107 DVS 109


>pdb|2IBG|A Chain A, Crystal Structure Of Hedgehog Bound To The Fniii Domains
           Of Ihog
 pdb|2IBG|B Chain B, Crystal Structure Of Hedgehog Bound To The Fniii Domains
           Of Ihog
 pdb|2IBG|C Chain C, Crystal Structure Of Hedgehog Bound To The Fniii Domains
           Of Ihog
 pdb|2IBG|D Chain D, Crystal Structure Of Hedgehog Bound To The Fniii Domains
           Of Ihog
          Length = 214

 Score = 27.3 bits (59), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 87  GGALQPLPCPLAPELDDVSESAV 109
           G AL P+P P   E+++ SE+AV
Sbjct: 110 GAALDPMPVPELLEIEEYSETAV 132


>pdb|2IBB|A Chain A, Crystal Structure Of The First And Second Fniii Domains Of
           Ihog
          Length = 213

 Score = 27.3 bits (59), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 87  GGALQPLPCPLAPELDDVSESAV 109
           G AL P+P P   E+++ SE+AV
Sbjct: 110 GAALDPMPVPELLEIEEYSETAV 132


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,041,044
Number of Sequences: 62578
Number of extensions: 189309
Number of successful extensions: 384
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 8
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)