Query 029970
Match_columns 184
No_of_seqs 89 out of 114
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 10:07:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h0z_A Serine protease inhibit 52.0 8 0.00027 27.4 2.2 30 54-83 25-54 (68)
2 4g7x_B TOLA protein; membrane, 30.9 28 0.00097 26.6 2.5 23 70-92 95-117 (138)
3 3cgi_A Propanediol utilization 20.6 63 0.0022 24.7 2.7 42 50-93 32-73 (124)
4 1hdl_A HF6478, serine proteina 20.0 32 0.0011 23.5 0.8 30 54-83 21-50 (55)
5 2csf_A DNA-binding protein SAT 19.8 28 0.00096 26.5 0.5 14 33-47 78-91 (101)
6 4a57_A Nucleoside-triphosphata 18.8 51 0.0018 31.7 2.2 34 62-96 406-439 (611)
7 2jr2_A UPF0352 protein CPS_261 18.4 33 0.0011 25.0 0.6 20 31-50 41-60 (76)
8 1lr0_A TOLA protein; domain-sw 16.4 57 0.0019 24.3 1.5 27 70-96 74-100 (129)
9 3bsu_A Ribonuclease H1, RNAse 13.3 72 0.0025 20.8 1.2 14 67-82 15-28 (53)
10 1tol_A G3P - TOLA, protein (fu 13.2 1.1E+02 0.0039 25.5 2.7 24 67-92 171-194 (222)
No 1
>1h0z_A Serine protease inhibitor kazal-type 5, contains hemofiltrate peptide HF6478, hemofiltrate...; serine proteinase inhibitor; NMR {Homo sapiens} SCOP: g.68.1.2
Probab=52.04 E-value=8 Score=27.39 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=27.8
Q ss_pred HhccccCCcccccccccccchHHHHHHHHH
Q 029970 54 AVGRTVNPVSGAVGLLWTGNWNVCQSAVER 83 (184)
Q Consensus 54 A~gRi~dPVyGcVGli~tg~w~~cq~ave~ 83 (184)
+|-|.-|||-|+=|..+.-.=.+|+++++.
T Consensus 25 ~C~~~y~PVCGsDGkTY~N~C~lc~a~~~~ 54 (68)
T 1h0z_A 25 ACTRENDPIQGPDGKVHGNTCSMCEVFFQA 54 (68)
T ss_dssp CCCCCSCCCBCTTSCBCSSHHHHHHHHHHH
T ss_pred CCCCCCCccCCCCCCEeCCHhHHhHHHHHC
Confidence 689999999999999999999999998875
No 2
>4g7x_B TOLA protein; membrane, protein binding-protein binding complex; 1.44A {Vibrio cholerae}
Probab=30.88 E-value=28 Score=26.60 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.3
Q ss_pred cccchHHHHHHHHHHHcCCCccc
Q 029970 70 WTGNWNVCQSAVERVLCGGALQP 92 (184)
Q Consensus 70 ~tg~w~~cq~ave~Vl~g~~i~~ 92 (184)
++|+-.+|++|+.||.+-+++-+
T Consensus 95 sSGd~~~d~aa~~Av~~a~~~P~ 117 (138)
T 4g7x_B 95 LDGDSRLCAATKRAVAQVNSFPL 117 (138)
T ss_dssp EEECHHHHHHHHHHHHTCCCEEC
T ss_pred cCCCHHHHHHHHHHHHHcCCCCC
Confidence 68999999999999999888743
No 3
>3cgi_A Propanediol utilization protein PDUU; circular permutation, beta barrel, bacterial microcompartmen propanediol, signaling protein; 1.80A {Salmonella typhimurium}
Probab=20.63 E-value=63 Score=24.66 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=35.4
Q ss_pred HHHHHhccccCCcccccccccccchHHHHHHHHHHHcCCCcccC
Q 029970 50 LLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPL 93 (184)
Q Consensus 50 LlYEA~gRi~dPVyGcVGli~tg~w~~cq~ave~Vl~g~~i~~~ 93 (184)
-+|++-++ +|-+.++|+|-+..+-..-.|.|+.++-..+.-+
T Consensus 32 ~l~~~L~~--~~~~~AlGiie~~~~~~ai~AAD~A~KAA~V~lv 73 (124)
T 3cgi_A 32 DLFKKLGL--QDAVSAIGILTITPSEASIIACDIATKSGAVEIG 73 (124)
T ss_dssp HHHHHTTC--CBSCCEEEEEEEESTTHHHHHHHHHHHSSSEEEE
T ss_pred HHHHHhCC--CCCCCeEEEEEecCHHHHHHHHHHHHhhcCcEEE
Confidence 45677777 7889999999999999999999999998876543
No 4
>1hdl_A HF6478, serine proteinase inhibitor lekti; putative serine proteinase inhibitor; NMR {Homo sapiens} SCOP: g.68.1.2 PDB: 1uuc_A
Probab=20.03 E-value=32 Score=23.47 Aligned_cols=30 Identities=10% Similarity=0.263 Sum_probs=26.6
Q ss_pred HhccccCCcccccccccccchHHHHHHHHH
Q 029970 54 AVGRTVNPVSGAVGLLWTGNWNVCQSAVER 83 (184)
Q Consensus 54 A~gRi~dPVyGcVGli~tg~w~~cq~ave~ 83 (184)
-|-|.-|||-|+=|..+.-.=..|++..|.
T Consensus 21 ~Ctre~~Pvcg~DGkty~NkC~~Ck~~le~ 50 (55)
T 1hdl_A 21 FCPQDKKFFQSLDGIMFINKCATCKMILEK 50 (55)
T ss_dssp CCCSCGGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCcccCCCCCEeccHhHHHHHHHHh
Confidence 377899999999999999999999887764
No 5
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=19.79 E-value=28 Score=26.50 Aligned_cols=14 Identities=21% Similarity=0.778 Sum_probs=7.6
Q ss_pred HHhhhCCCCCchHHH
Q 029970 33 SFISAVPETQRPSLF 47 (184)
Q Consensus 33 klL~~vP~~~R~~~f 47 (184)
++| ++|+.+|..++
T Consensus 78 nWL-~Lpe~eR~~I~ 91 (101)
T 2csf_A 78 RFL-NLPQHERDVIY 91 (101)
T ss_dssp HHH-TSCHHHHHHHH
T ss_pred HHH-cCCHHHHHHHH
Confidence 444 56666665543
No 6
>4a57_A Nucleoside-triphosphatase 1; hydrolase; 2.00A {Toxoplasma gondii} PDB: 4a59_A* 4a5a_A* 4a5b_A 3agr_A
Probab=18.75 E-value=51 Score=31.66 Aligned_cols=34 Identities=32% Similarity=0.530 Sum_probs=28.7
Q ss_pred cccccccccccchHHHHHHHHHHHcCCCcccCCCC
Q 029970 62 VSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCP 96 (184)
Q Consensus 62 VyGcVGli~tg~w~~cq~ave~Vl~g~~i~~~~~~ 96 (184)
|.||.=+.-||+...||+.||.+|---+ -|||.-
T Consensus 406 i~~c~~ivgtgdf~~c~~~v~~il~~p~-~plpan 439 (611)
T 4a57_A 406 IENCSIIKGTGNFDKCVSQVESILVAPK-LPLPAN 439 (611)
T ss_dssp CTTCCEEEECCCHHHHHHHHHHHTTSCS-SCCCCC
T ss_pred CCCceEEeecCCHHHHHHHHHHHhcCCC-CCCCcc
Confidence 7899999999999999999999997544 366663
No 7
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=18.38 E-value=33 Score=25.00 Aligned_cols=20 Identities=25% Similarity=0.589 Sum_probs=16.3
Q ss_pred hHHHhhhCCCCCchHHHHHH
Q 029970 31 LMSFISAVPETQRPSLFQSL 50 (184)
Q Consensus 31 l~klL~~vP~~~R~~~f~SL 50 (184)
+.++|++||+.||..+.++.
T Consensus 41 vTnlln~V~~~qR~~iAe~F 60 (76)
T 2jr2_A 41 VTNIIAQVPESKRVAVVDNF 60 (76)
T ss_dssp HHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 46788899999998877654
No 8
>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A {Pseudomonas aeruginosa} SCOP: d.212.1.1
Probab=16.42 E-value=57 Score=24.27 Aligned_cols=27 Identities=22% Similarity=0.116 Sum_probs=21.9
Q ss_pred cccchHHHHHHHHHHHcCCCcccCCCC
Q 029970 70 WTGNWNVCQSAVERVLCGGALQPLPCP 96 (184)
Q Consensus 70 ~tg~w~~cq~ave~Vl~g~~i~~~~~~ 96 (184)
++|+=.+|++|+.+|.+.+++.+.+++
T Consensus 74 SSG~~~lD~AAl~AV~ra~p~P~p~~L 100 (129)
T 1lr0_A 74 SSGDKPFDSSAVAAVRNVGRIPEMQQL 100 (129)
T ss_dssp CCSCHHHHHHHHHHHHHHCBCGGGGGS
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 579999999999999998876544444
No 9
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=13.30 E-value=72 Score=20.79 Aligned_cols=14 Identities=36% Similarity=1.101 Sum_probs=10.9
Q ss_pred ccccccchHHHHHHHH
Q 029970 67 GLLWTGNWNVCQSAVE 82 (184)
Q Consensus 67 Gli~tg~w~~cq~ave 82 (184)
|+.. +|..||+.|.
T Consensus 15 GIy~--sW~ec~~qV~ 28 (53)
T 3bsu_A 15 GVFL--TWNECRAQVD 28 (53)
T ss_dssp EEES--SHHHHHHHHT
T ss_pred ceEC--CHHHHHHHhc
Confidence 5444 8999999985
No 10
>1tol_A G3P - TOLA, protein (fusion protein consisting of minor coat protein, glycine rich linker, TOLA,...; bacteriophage M13, phage infection; 1.85A {Enterobacteria phage M13} SCOP: b.37.1.1 d.212.1.1 PDB: 2x9a_B 3qdr_A* 3qdp_A* 1s62_A
Probab=13.20 E-value=1.1e+02 Score=25.51 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=19.6
Q ss_pred ccccccchHHHHHHHHHHHcCCCccc
Q 029970 67 GLLWTGNWNVCQSAVERVLCGGALQP 92 (184)
Q Consensus 67 Gli~tg~w~~cq~ave~Vl~g~~i~~ 92 (184)
=++ +|+=.+|++|+.+|.+- ++.+
T Consensus 171 ~V~-SGd~aLD~AAl~AVrrA-pfP~ 194 (222)
T 1tol_A 171 KPE-GGDPALCQAALAAAKLA-KIPK 194 (222)
T ss_dssp EEE-EECHHHHHHHHHHHHHC-CCCC
T ss_pred Eec-CCCHHHHHHHHHHHHhC-CCCc
Confidence 344 89999999999999988 6533
Done!