BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029971
         (184 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5HBR8|ZNUC_EHRRW Zinc import ATP-binding protein ZnuC OS=Ehrlichia ruminantium
           (strain Welgevonden) GN=znuC PE=3 SV=1
          Length = 242

 Score = 31.6 bits (70), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 9/80 (11%)

Query: 48  PSGGNMPTFSRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKL 107
           P+GG   T  RI V      LGI  YA        +NF++     +      I    E  
Sbjct: 57  PNGGGKTTLIRILVGIYKNYLGIVEYA--------KNFVIGYLPQNFSVNSLIPMTVEYF 108

Query: 108 LMTSFRRRKKEKINLKSRLK 127
           L++S+ +++K K+NL S LK
Sbjct: 109 LVSSYTKQRK-KLNLNSVLK 127


>sp|Q5FHB0|ZNUC_EHRRG Zinc import ATP-binding protein ZnuC OS=Ehrlichia ruminantium
           (strain Gardel) GN=znuC PE=3 SV=1
          Length = 242

 Score = 31.6 bits (70), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 9/80 (11%)

Query: 48  PSGGNMPTFSRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKL 107
           P+GG   T  RI V      LGI  YA        +NF++     +      I    E  
Sbjct: 57  PNGGGKTTLIRILVGIYKNYLGIVEYA--------KNFVIGYLPQNFSVNSLIPMTVEYF 108

Query: 108 LMTSFRRRKKEKINLKSRLK 127
           L++S+ +++K K+NL S LK
Sbjct: 109 LVSSYTKQRK-KLNLNSVLK 127


>sp|Q09FX5|ATPF_NANDO ATP synthase subunit b, chloroplastic OS=Nandina domestica GN=atpF
           PE=3 SV=1
          Length = 184

 Score = 30.8 bits (68), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 15/71 (21%), Positives = 35/71 (49%)

Query: 100 IEAAFEKLLMTSFRRRKKEKINLKSRLKKQVEESPPWFKNLLNFVELPPKDVIFRRLFLF 159
           +E   E  ++  ++  ++EK+NL++ + K +E    +    + F +    + + +R+F  
Sbjct: 88  VEKEAEDYIVNGYQEIEREKLNLRNSIGKNLERLENYKNETIQFEQQRAINQVRQRVFQQ 147

Query: 160 AFMGGWSIMNS 170
           A  G    +NS
Sbjct: 148 ALQGALGTLNS 158


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,131,513
Number of Sequences: 539616
Number of extensions: 2695578
Number of successful extensions: 7221
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7216
Number of HSP's gapped (non-prelim): 13
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)