Query 029971
Match_columns 184
No_of_seqs 172 out of 395
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:30:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11833 DUF3353: Protein of u 100.0 6.7E-36 1.5E-40 249.7 10.1 113 71-183 1-125 (194)
2 COG0484 DnaJ DnaJ-class molecu 99.5 1.1E-14 2.4E-19 132.5 6.5 57 59-115 1-65 (371)
3 KOG0713 Molecular chaperone (D 99.4 5.8E-13 1.3E-17 119.9 6.2 54 60-113 14-75 (336)
4 PRK14296 chaperone protein Dna 99.4 7.8E-13 1.7E-17 119.3 6.5 57 59-115 1-64 (372)
5 PRK14288 chaperone protein Dna 99.4 1.1E-12 2.4E-17 118.1 6.6 53 61-113 2-62 (369)
6 smart00271 DnaJ DnaJ molecular 99.3 1.5E-12 3.2E-17 87.2 5.2 48 62-109 1-57 (60)
7 PTZ00037 DnaJ_C chaperone prot 99.3 1.4E-12 3.1E-17 119.9 6.0 61 55-115 21-85 (421)
8 PF00226 DnaJ: DnaJ domain; I 99.3 2.9E-12 6.2E-17 87.3 6.0 51 63-113 1-60 (64)
9 PRK14299 chaperone protein Dna 99.3 2.6E-12 5.5E-17 112.2 6.7 57 59-115 1-64 (291)
10 PRK14286 chaperone protein Dna 99.3 2.6E-12 5.6E-17 115.8 6.7 57 59-115 1-65 (372)
11 PRK14276 chaperone protein Dna 99.3 3.1E-12 6.8E-17 115.4 6.5 57 59-115 1-64 (380)
12 cd06257 DnaJ DnaJ domain or J- 99.3 2.3E-12 5.1E-17 84.6 4.2 46 63-108 1-54 (55)
13 PRK14282 chaperone protein Dna 99.3 3.6E-12 7.7E-17 114.6 6.7 57 59-115 1-66 (369)
14 PRK14287 chaperone protein Dna 99.3 3.5E-12 7.6E-17 114.9 6.5 57 59-115 1-64 (371)
15 PRK14279 chaperone protein Dna 99.3 3.4E-12 7.4E-17 115.9 6.1 57 59-115 6-70 (392)
16 KOG0721 Molecular chaperone (D 99.3 7.4E-12 1.6E-16 107.6 6.8 81 59-140 96-186 (230)
17 PRK14280 chaperone protein Dna 99.3 6.4E-12 1.4E-16 113.3 6.6 57 59-115 1-64 (376)
18 PRK14283 chaperone protein Dna 99.3 6.3E-12 1.4E-16 113.3 6.5 56 59-114 2-64 (378)
19 PRK14295 chaperone protein Dna 99.3 5.8E-12 1.3E-16 114.3 6.2 52 60-111 7-66 (389)
20 PRK10767 chaperone protein Dna 99.3 7E-12 1.5E-16 112.5 6.7 57 59-115 1-65 (371)
21 PTZ00100 DnaJ chaperone protei 99.3 6E-12 1.3E-16 98.7 5.0 51 58-108 61-115 (116)
22 PRK14294 chaperone protein Dna 99.3 8.9E-12 1.9E-16 111.9 6.8 57 59-115 1-65 (366)
23 PRK09430 djlA Dna-J like membr 99.3 6E-12 1.3E-16 109.4 5.5 53 58-110 196-263 (267)
24 PRK14285 chaperone protein Dna 99.2 9.8E-12 2.1E-16 111.9 6.1 55 61-115 2-64 (365)
25 PRK14277 chaperone protein Dna 99.2 1.2E-11 2.5E-16 112.0 6.6 56 60-115 3-66 (386)
26 PRK14297 chaperone protein Dna 99.2 1E-11 2.2E-16 112.0 6.1 56 59-114 1-64 (380)
27 PRK14278 chaperone protein Dna 99.2 1.3E-11 2.9E-16 111.4 6.7 53 61-113 2-61 (378)
28 PRK14301 chaperone protein Dna 99.2 1.4E-11 3E-16 111.1 6.5 53 59-111 1-61 (373)
29 PRK14298 chaperone protein Dna 99.2 1.3E-11 2.9E-16 111.5 6.3 54 61-114 4-64 (377)
30 PRK14300 chaperone protein Dna 99.2 1.7E-11 3.8E-16 110.4 6.7 55 61-115 2-63 (372)
31 PRK10266 curved DNA-binding pr 99.2 2E-11 4.3E-16 107.2 6.7 52 59-110 1-59 (306)
32 KOG0715 Molecular chaperone (D 99.2 1.8E-11 3.9E-16 107.7 6.4 56 59-115 40-102 (288)
33 PRK14291 chaperone protein Dna 99.2 2.6E-11 5.7E-16 109.6 6.5 53 61-113 2-61 (382)
34 PRK14281 chaperone protein Dna 99.2 3E-11 6.5E-16 109.8 6.7 53 61-113 2-62 (397)
35 PRK14289 chaperone protein Dna 99.2 3.3E-11 7.3E-16 108.8 6.6 56 59-114 2-65 (386)
36 PRK14284 chaperone protein Dna 99.2 3.9E-11 8.5E-16 108.7 6.3 49 62-110 1-57 (391)
37 PRK14290 chaperone protein Dna 99.1 7.1E-11 1.5E-15 106.1 6.4 50 62-111 3-61 (365)
38 TIGR02349 DnaJ_bact chaperone 99.1 7.5E-11 1.6E-15 105.0 6.5 50 63-112 1-57 (354)
39 PRK14293 chaperone protein Dna 99.1 1.5E-10 3.2E-15 104.3 7.0 55 61-115 2-63 (374)
40 PRK14292 chaperone protein Dna 99.1 1.1E-10 2.5E-15 104.7 5.9 50 62-111 2-58 (371)
41 KOG0712 Molecular chaperone (D 99.1 1.7E-10 3.8E-15 104.2 6.4 50 60-109 2-56 (337)
42 COG2214 CbpA DnaJ-class molecu 99.0 4.9E-10 1.1E-14 87.3 6.0 54 61-114 5-67 (237)
43 PHA03102 Small T antigen; Revi 99.0 6.4E-10 1.4E-14 90.7 6.0 54 62-115 5-64 (153)
44 KOG0717 Molecular chaperone (D 98.9 9.4E-10 2E-14 103.0 4.8 54 61-114 7-69 (508)
45 KOG0719 Molecular chaperone (D 98.9 2.1E-09 4.5E-14 93.8 5.7 60 61-121 13-85 (264)
46 PTZ00341 Ring-infected erythro 98.8 8.2E-09 1.8E-13 103.7 6.4 61 60-120 571-640 (1136)
47 KOG0716 Molecular chaperone (D 98.8 8E-09 1.7E-13 91.3 5.0 54 61-115 30-91 (279)
48 TIGR03835 termin_org_DnaJ term 98.7 1.5E-08 3.2E-13 99.9 6.5 54 62-115 2-62 (871)
49 KOG0691 Molecular chaperone (D 98.7 1.4E-08 3E-13 90.5 5.6 61 61-121 4-74 (296)
50 PHA02624 large T antigen; Prov 98.7 2.7E-08 5.9E-13 96.2 5.3 56 61-116 10-71 (647)
51 COG5407 SEC63 Preprotein trans 98.6 4.7E-08 1E-12 92.2 4.5 56 60-115 96-164 (610)
52 PRK05014 hscB co-chaperone Hsc 98.6 1.2E-07 2.6E-12 77.9 6.1 54 62-115 1-69 (171)
53 KOG0718 Molecular chaperone (D 98.5 1.2E-07 2.7E-12 89.3 5.2 56 59-114 6-72 (546)
54 KOG0624 dsRNA-activated protei 98.4 1.9E-07 4.1E-12 86.4 4.6 58 61-119 393-463 (504)
55 PRK01356 hscB co-chaperone Hsc 98.4 4.2E-07 9.1E-12 74.5 5.9 53 62-114 2-67 (166)
56 PRK00294 hscB co-chaperone Hsc 98.4 6.2E-07 1.3E-11 74.2 6.5 56 59-114 1-71 (173)
57 PRK03578 hscB co-chaperone Hsc 98.4 7.5E-07 1.6E-11 73.8 6.5 55 61-115 5-74 (176)
58 KOG0720 Molecular chaperone (D 98.2 1.6E-06 3.4E-11 81.6 4.6 56 54-109 227-289 (490)
59 KOG0722 Molecular chaperone (D 98.2 8E-07 1.7E-11 79.1 1.9 47 61-107 32-85 (329)
60 KOG0550 Molecular chaperone (D 98.1 2.3E-06 5E-11 80.1 3.8 55 61-115 372-435 (486)
61 KOG0714 Molecular chaperone (D 98.1 2.4E-06 5.3E-11 70.0 3.1 46 61-106 2-56 (306)
62 KOG0568 Molecular chaperone (D 98.0 1.2E-05 2.7E-10 71.1 5.9 53 62-114 47-106 (342)
63 KOG0723 Molecular chaperone (D 97.7 4.9E-05 1.1E-09 59.6 4.0 53 57-109 51-107 (112)
64 COG1076 DjlA DnaJ-domain-conta 97.6 3.7E-05 8E-10 62.9 2.8 46 62-107 113-173 (174)
65 KOG1150 Predicted molecular ch 97.5 0.00017 3.7E-09 62.6 4.9 55 61-115 52-115 (250)
66 PRK01773 hscB co-chaperone Hsc 97.4 0.00036 7.7E-09 57.9 6.2 53 62-114 2-69 (173)
67 KOG1789 Endocytosis protein RM 97.3 0.00029 6.2E-09 72.8 5.2 55 54-108 1273-1336(2235)
68 PF13446 RPT: A repeated domai 97.1 0.00092 2E-08 46.0 4.2 51 59-112 2-52 (62)
69 TIGR00714 hscB Fe-S protein as 96.7 0.0029 6.4E-08 51.4 5.2 40 74-113 3-55 (157)
70 COG5269 ZUO1 Ribosome-associat 95.0 0.027 5.9E-07 51.2 3.9 61 59-120 40-113 (379)
71 PF03656 Pam16: Pam16; InterP 94.6 0.038 8.3E-07 44.2 3.5 53 58-110 54-110 (127)
72 COG5552 Uncharacterized conser 77.5 6.6 0.00014 29.6 5.0 44 64-107 5-52 (88)
73 PF10041 DUF2277: Uncharacteri 67.2 24 0.00053 26.4 6.0 27 67-93 8-34 (78)
74 KOG0431 Auxilin-like protein a 50.9 18 0.00038 34.5 3.6 30 65-94 391-420 (453)
75 PF11351 DUF3154: Protein of u 50.6 67 0.0014 25.1 6.3 55 83-140 3-61 (123)
76 TIGR01337 apcB allophycocyanin 39.0 46 0.00099 27.6 3.9 49 61-109 112-160 (167)
77 KOG3442 Uncharacterized conser 35.3 26 0.00056 28.5 1.8 32 59-90 56-87 (132)
78 PTZ00352 60S ribosomal protein 34.8 72 0.0016 27.9 4.5 66 54-120 122-201 (212)
79 PRK00907 hypothetical protein; 34.7 72 0.0016 24.1 4.0 43 62-108 17-83 (92)
80 cd06572 Histidinol_dh Histidin 32.5 67 0.0015 30.3 4.3 38 73-118 36-73 (390)
81 PF04286 DUF445: Protein of un 32.2 3.1E+02 0.0066 23.6 8.1 20 148-167 341-360 (367)
82 PF00815 Histidinol_dh: Histid 32.1 67 0.0015 30.5 4.2 37 73-117 49-85 (412)
83 TIGR00069 hisD histidinol dehy 31.3 75 0.0016 30.1 4.4 37 74-118 33-69 (393)
84 PRK00877 hisD bifunctional his 30.5 77 0.0017 30.2 4.4 38 73-118 64-101 (425)
85 PF13720 Acetyltransf_11: Udp 30.4 37 0.0008 24.8 1.8 17 93-109 29-45 (83)
86 CHL00089 apcF allophycocyanin 30.1 74 0.0016 26.6 3.7 48 62-109 114-162 (169)
87 COG0141 HisD Histidinol dehydr 30.0 1.1E+02 0.0023 29.5 5.2 37 74-118 61-97 (425)
88 smart00831 Cation_ATPase_N Cat 29.3 69 0.0015 21.2 2.9 29 133-161 33-61 (64)
89 PRK13770 histidinol dehydrogen 29.2 86 0.0019 29.9 4.4 36 74-117 57-92 (416)
90 PRK12447 histidinol dehydrogen 28.7 90 0.002 29.8 4.5 37 73-117 57-93 (426)
91 PF14490 HHH_4: Helix-hairpin- 28.5 85 0.0018 23.0 3.5 46 61-110 41-86 (94)
92 PRK07668 hypothetical protein; 28.2 4.1E+02 0.0089 23.6 8.3 78 81-167 12-91 (254)
93 KOG3767 Sideroflexin [General 27.0 55 0.0012 30.3 2.7 30 64-93 56-85 (328)
94 COG1076 DjlA DnaJ-domain-conta 26.4 1E+02 0.0023 25.0 4.0 39 77-115 18-69 (174)
95 cd03166 CD63_LEL Tetraspanin, 26.3 1.6E+02 0.0035 20.7 4.6 28 76-107 8-35 (99)
96 PRK07027 cobalamin biosynthesi 25.9 82 0.0018 24.5 3.2 32 67-98 7-38 (126)
97 COG3413 Predicted DNA binding 25.5 34 0.00073 28.5 1.0 35 59-93 179-213 (215)
98 PF05225 HTH_psq: helix-turn-h 23.9 2.1E+02 0.0046 18.5 4.5 41 75-120 1-41 (45)
99 COG3167 PilO Tfp pilus assembl 23.8 1.5E+02 0.0032 26.0 4.5 36 74-109 56-94 (211)
100 PF07793 DUF1631: Protein of u 23.7 3.4E+02 0.0073 26.7 7.5 35 76-110 429-463 (729)
101 PRK12547 RNA polymerase sigma 23.0 42 0.00091 26.0 1.0 32 62-93 132-163 (164)
102 TIGR03759 conj_TIGR03759 integ 22.7 1.2E+02 0.0026 26.4 3.7 44 62-107 37-81 (200)
103 PF01956 DUF106: Integral memb 22.5 3.9E+02 0.0084 21.2 6.6 17 150-166 91-107 (168)
104 PF08876 DUF1836: Domain of un 22.1 76 0.0017 24.5 2.3 33 71-106 72-104 (105)
105 COG2921 Uncharacterized conser 22.1 1.2E+02 0.0026 23.3 3.3 42 62-107 15-80 (90)
106 PF07709 SRR: Seven Residue Re 21.2 64 0.0014 16.3 1.2 11 97-107 3-13 (14)
107 PF12725 DUF3810: Protein of u 21.1 2.7E+02 0.0059 25.1 5.9 46 63-108 83-147 (318)
108 PF06570 DUF1129: Protein of u 20.7 4.7E+02 0.01 21.7 6.9 33 79-111 10-42 (206)
109 PF04967 HTH_10: HTH DNA bindi 20.0 35 0.00075 23.4 -0.0 29 59-87 24-52 (53)
No 1
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=100.00 E-value=6.7e-36 Score=249.69 Aligned_cols=113 Identities=39% Similarity=0.640 Sum_probs=108.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHhhhhccchhHhhhh------------ccCCCChHHH
Q 029971 71 SPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKEKINLKSRLKK------------QVEESPPWFK 138 (184)
Q Consensus 71 s~~AS~dEIk~Ayr~L~~qyh~D~~~~~~IeaAYD~Ilm~~l~~R~~Gki~v~~~IRk------------~~~~~ppW~~ 138 (184)
||+|||||||+|||+|.+||.+|+++.++||+|||+|+|+||++||+|||+|+++||+ ..+++|+|+|
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~~~~~~IEaAYD~ILM~rL~~Rq~Gki~v~~~ir~ad~~~~~~~~~~~~~~~p~wl~ 80 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDEKSREAIEAAYDAILMERLRQRQKGKIKVPERIRYADREEPKPPNPKPSNPSPPWLQ 80 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHhhhccccccCCCCCCccchHHH
Confidence 6899999999999999999999999999999999999999999999999999999993 2468899999
Q ss_pred HhhhhccCCCHHHHHHHHHHHHHHHHHHHhccCCCCCeeeeeecc
Q 029971 139 NLLNFVELPPKDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVCSCC 183 (184)
Q Consensus 139 ~~~~~fe~Ps~~~i~~~~~ifa~L~~wti~~~ae~gP~fqvAis~ 183 (184)
++..+|++|+.++|.+++++|++|++|+++++++++|+||+|+|+
T Consensus 81 ~~~~~~~~P~~~~l~~~~~~f~~L~~~~~~~~~~~~~~l~Lal~~ 125 (194)
T PF11833_consen 81 RLLPSFDTPSSQDLLIRAAAFGALGLWSLLFPAASGPGLQLALGL 125 (194)
T ss_pred hcccceeCCCcchHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHH
Confidence 999999999999999999999999999999999999999999985
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.1e-14 Score=132.53 Aligned_cols=57 Identities=33% Similarity=0.339 Sum_probs=48.9
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCC--------hhHHHHHHHHHHHHHhHHHHHh
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGH--------ERSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D--------~~~~~~IeaAYD~Ilm~~l~~R 115 (184)
|...|.|++|||+++||.+|||+|||+|++||||| ++++.+|++|||.|...+-|+.
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~ 65 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAA 65 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 56789999999999999999999999999999999 3467899999996666544443
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5.8e-13 Score=119.86 Aligned_cols=54 Identities=30% Similarity=0.292 Sum_probs=46.8
Q ss_pred CcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh--------HHHHHHHHHHHHHhHHHH
Q 029971 60 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER--------SEESIEAAFEKLLMTSFR 113 (184)
Q Consensus 60 ~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~~--------~~~~IeaAYD~Ilm~~l~ 113 (184)
..+|+|++|||+++||+.|||+|||+|+.+||||+. .+.+|++||+.+....+|
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekR 75 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKR 75 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 468999999999999999999999999999999953 578999999965554433
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=7.8e-13 Score=119.31 Aligned_cols=57 Identities=33% Similarity=0.336 Sum_probs=49.0
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhHHHHHh
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
|...|+|++|||+++||.+|||+|||+|+++||||. +++.+|++|||.|.....|+.
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~ 64 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQ 64 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhh
Confidence 556899999999999999999999999999999994 457799999997666554444
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=1.1e-12 Score=118.08 Aligned_cols=53 Identities=21% Similarity=0.148 Sum_probs=45.6
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHhHHHH
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFR 113 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~--------~~~~~IeaAYD~Ilm~~l~ 113 (184)
..|+|++|||+++||.+|||+|||+|+++||||. +++++|++|||.|....-|
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR 62 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKR 62 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHH
Confidence 5899999999999999999999999999999994 3567999999965554433
No 6
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.35 E-value=1.5e-12 Score=87.16 Aligned_cols=48 Identities=29% Similarity=0.272 Sum_probs=42.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh---------HHHHHHHHHHHHHh
Q 029971 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER---------SEESIEAAFEKLLM 109 (184)
Q Consensus 62 ~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~~---------~~~~IeaAYD~Ilm 109 (184)
.|||++|||+++++.+||++||++|+++||||.. .+.+|++||+.|..
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcC
Confidence 4899999999999999999999999999999953 45689999997654
No 7
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.33 E-value=1.4e-12 Score=119.86 Aligned_cols=61 Identities=18% Similarity=0.097 Sum_probs=51.7
Q ss_pred CCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh----hHHHHHHHHHHHHHhHHHHHh
Q 029971 55 TFSRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 55 ~Fprm~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~----~~~~~IeaAYD~Ilm~~l~~R 115 (184)
..+.|...|+|++|||+++||.+|||+|||+|+++||||+ +++.+|++||+.|.....|+.
T Consensus 21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~ 85 (421)
T PTZ00037 21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKI 85 (421)
T ss_pred ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHH
Confidence 4445778999999999999999999999999999999995 678899999996665544433
No 8
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.33 E-value=2.9e-12 Score=87.31 Aligned_cols=51 Identities=35% Similarity=0.456 Sum_probs=44.3
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCh---------hHHHHHHHHHHHHHhHHHH
Q 029971 63 DPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFR 113 (184)
Q Consensus 63 dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~---------~~~~~IeaAYD~Ilm~~l~ 113 (184)
|||++|||+++++.+||+++|++++++||||. +....|++||+.|.....|
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R 60 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERR 60 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHH
Confidence 68999999999999999999999999999995 3567899999976655443
No 9
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=2.6e-12 Score=112.21 Aligned_cols=57 Identities=26% Similarity=0.260 Sum_probs=48.5
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhHHHHHh
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
|...|+|++|||+++||.+|||+|||+|+++||||. +++.+|++|||.|.....|+.
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~ 64 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRI 64 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 556899999999999999999999999999999994 356789999997766544433
No 10
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=2.6e-12 Score=115.82 Aligned_cols=57 Identities=25% Similarity=0.251 Sum_probs=48.2
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHhHHHHHh
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~--------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
|...|+|++|||+++||.+|||+|||+|+++||||. +++.+|++|||.|.....|+.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~ 65 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQA 65 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 556899999999999999999999999999999995 356799999996655444433
No 11
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=3.1e-12 Score=115.43 Aligned_cols=57 Identities=26% Similarity=0.316 Sum_probs=49.3
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhHHHHHh
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
|..+|+|++|||+++||.+|||+|||+|+++||||. +++.+|++|||.|.+...|+.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~ 64 (380)
T PRK14276 1 MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAA 64 (380)
T ss_pred CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhh
Confidence 456899999999999999999999999999999993 467899999997766654444
No 12
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.30 E-value=2.3e-12 Score=84.64 Aligned_cols=46 Identities=35% Similarity=0.434 Sum_probs=41.4
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCChh--------HHHHHHHHHHHHH
Q 029971 63 DPYKRLGISPYASEEEIWGSRNFLLEQYTGHER--------SEESIEAAFEKLL 108 (184)
Q Consensus 63 dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~~--------~~~~IeaAYD~Il 108 (184)
|||++|||+++++.++|+++|++|+++||||.. .+.+|+.||+.|.
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999954 3468999999663
No 13
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=3.6e-12 Score=114.55 Aligned_cols=57 Identities=26% Similarity=0.287 Sum_probs=48.1
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh---------hHHHHHHHHHHHHHhHHHHHh
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~---------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
|...|+|++|||+++||.+|||+|||+|+++||||. +++.+|++||+.|.....|+.
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~ 66 (369)
T PRK14282 1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAM 66 (369)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHH
Confidence 556899999999999999999999999999999995 245689999997666544444
No 14
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=3.5e-12 Score=114.91 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=48.3
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhHHHHHh
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
|...|+|++|||+++||.+|||+|||+|+++||||. +++.+|++|||.|.....|+.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~ 64 (371)
T PRK14287 1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAH 64 (371)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHH
Confidence 456799999999999999999999999999999994 357799999996665544444
No 15
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=3.4e-12 Score=115.86 Aligned_cols=57 Identities=26% Similarity=0.222 Sum_probs=48.3
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHhHHHHHh
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~--------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
+...|+|++|||+++||.+|||+|||+|+++||||. +++.+|++|||.|.....|+.
T Consensus 6 ~~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~ 70 (392)
T PRK14279 6 WVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKE 70 (392)
T ss_pred hcccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhH
Confidence 346899999999999999999999999999999984 346699999997766554444
No 16
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=7.4e-12 Score=107.63 Aligned_cols=81 Identities=26% Similarity=0.298 Sum_probs=60.9
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh--------HHHHHHHHHHHHHhHHHHHh--hhhccchhHhhhh
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER--------SEESIEAAFEKLLMTSFRRR--KKEKINLKSRLKK 128 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~~--------~~~~IeaAYD~Ilm~~l~~R--~~Gki~v~~~IRk 128 (184)
+...||||+|||+++||+.|||+|||+|..+||||++ ..++|++||.++..+.-++- +=|.=+.|..+..
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGpq~~s~ 175 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGPQATSF 175 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCccchhh
Confidence 5578999999999999999999999999999999973 56799999999877654444 4455555555432
Q ss_pred ccCCCChHHHHh
Q 029971 129 QVEESPPWFKNL 140 (184)
Q Consensus 129 ~~~~~ppW~~~~ 140 (184)
.-..|.|+-+.
T Consensus 176 -GIALPk~Ivd~ 186 (230)
T KOG0721|consen 176 -GIALPKWIVDK 186 (230)
T ss_pred -HhhhHHHHHhc
Confidence 22345565444
No 17
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=6.4e-12 Score=113.28 Aligned_cols=57 Identities=28% Similarity=0.293 Sum_probs=48.8
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhHHHHHh
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
|...|+|++|||+++||.+|||+|||+|+++||||. +++++|++||+.|.....|+.
T Consensus 1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~ 64 (376)
T PRK14280 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQ 64 (376)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHH
Confidence 455799999999999999999999999999999994 467899999997765554444
No 18
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=6.3e-12 Score=113.29 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=47.7
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhHHHHH
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRR 114 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~~l~~ 114 (184)
|...|+|++|||+++||.+|||+|||+|+++||||. +++.+|++|||.|.....|+
T Consensus 2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~ 64 (378)
T PRK14283 2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQ 64 (378)
T ss_pred CCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHH
Confidence 457899999999999999999999999999999995 36779999999665544333
No 19
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=5.8e-12 Score=114.26 Aligned_cols=52 Identities=27% Similarity=0.265 Sum_probs=45.8
Q ss_pred CcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHhHH
Q 029971 60 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTS 111 (184)
Q Consensus 60 ~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~--------~~~~~IeaAYD~Ilm~~ 111 (184)
.+.|+|++|||+++||.+|||+|||+|+++||||. +++++|++|||.|....
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~ 66 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEK 66 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchh
Confidence 36899999999999999999999999999999994 35679999999665543
No 20
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=7e-12 Score=112.49 Aligned_cols=57 Identities=30% Similarity=0.307 Sum_probs=48.2
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHhHHHHHh
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~--------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
|+..|+|++|||+++||.+|||+|||+|+++||||. +.+.+|++|||.|.....|..
T Consensus 1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~ 65 (371)
T PRK10767 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAA 65 (371)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhH
Confidence 556899999999999999999999999999999995 245689999997766554443
No 21
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.26 E-value=6e-12 Score=98.73 Aligned_cols=51 Identities=27% Similarity=0.314 Sum_probs=46.8
Q ss_pred CCCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh----hHHHHHHHHHHHHH
Q 029971 58 RIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLL 108 (184)
Q Consensus 58 rm~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~----~~~~~IeaAYD~Il 108 (184)
.|+.+++|++|||+++||.+||+++||+|+++||||. +..++|++|||.|+
T Consensus 61 ~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 5778999999999999999999999999999999994 46789999999774
No 22
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.26 E-value=8.9e-12 Score=111.89 Aligned_cols=57 Identities=30% Similarity=0.235 Sum_probs=48.7
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHhHHHHHh
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~--------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
|...|+|++|||+++||.+|||+|||+|+++||||. +.+++|++||+.|.+...|..
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~ 65 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGI 65 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 556899999999999999999999999999999994 356799999997766555444
No 23
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.26 E-value=6e-12 Score=109.44 Aligned_cols=53 Identities=25% Similarity=0.319 Sum_probs=47.2
Q ss_pred CCCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh---------------hHHHHHHHHHHHHHhH
Q 029971 58 RIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------------RSEESIEAAFEKLLMT 110 (184)
Q Consensus 58 rm~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~---------------~~~~~IeaAYD~Ilm~ 110 (184)
.++..|+|++|||+++||.+|||+|||+|+++||||. ++..+|++|||.|..+
T Consensus 196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4667999999999999999999999999999999996 2467999999988654
No 24
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=9.8e-12 Score=111.85 Aligned_cols=55 Identities=25% Similarity=0.260 Sum_probs=47.0
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHhHHHHHh
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~--------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
..|+|++|||+++||.+|||+|||+|+++||||. +++.+|++||+.|..+..|..
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~ 64 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQ 64 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHH
Confidence 4799999999999999999999999999999995 347799999996666544333
No 25
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1.2e-11 Score=111.96 Aligned_cols=56 Identities=29% Similarity=0.290 Sum_probs=47.7
Q ss_pred CcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHhHHHHHh
Q 029971 60 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 60 ~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~--------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
...|+|++|||+++||++||++|||+|+++||||. +++++|++|||.|.....|+.
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~ 66 (386)
T PRK14277 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQ 66 (386)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 35799999999999999999999999999999994 356799999997666544444
No 26
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1e-11 Score=111.97 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=47.4
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHhHHHHH
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRR 114 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~--------~~~~~IeaAYD~Ilm~~l~~ 114 (184)
|...|+|++|||+++||.+|||+|||+|+++||||. +++.+|++|||.|.....|+
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 64 (380)
T PRK14297 1 MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA 64 (380)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhC
Confidence 445799999999999999999999999999999994 34679999999666654443
No 27
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.3e-11 Score=111.44 Aligned_cols=53 Identities=28% Similarity=0.245 Sum_probs=45.2
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhHHHH
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFR 113 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~~l~ 113 (184)
..|+|++|||+++||.+|||+|||+|+++||||. +.+.+|+.|||.|.....|
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r 61 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKR 61 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhh
Confidence 3799999999999999999999999999999994 3567899999965544333
No 28
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.4e-11 Score=111.13 Aligned_cols=53 Identities=30% Similarity=0.298 Sum_probs=46.2
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHhHH
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTS 111 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~--------~~~~~IeaAYD~Ilm~~ 111 (184)
|+..|+|++|||+++||.+|||+|||+|+++||||. +++.+|++|||.|....
T Consensus 1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~ 61 (373)
T PRK14301 1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAE 61 (373)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchh
Confidence 456899999999999999999999999999999994 25679999999665544
No 29
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.3e-11 Score=111.50 Aligned_cols=54 Identities=28% Similarity=0.260 Sum_probs=46.0
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhHHHHH
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRR 114 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~~l~~ 114 (184)
..|+|++|||+++||.+|||+|||+|+++||||. +++.+|++|||.|.....|+
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~ 64 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRA 64 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhh
Confidence 4799999999999999999999999999999995 35679999999655544333
No 30
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=1.7e-11 Score=110.36 Aligned_cols=55 Identities=27% Similarity=0.284 Sum_probs=47.5
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhHHHHHh
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
..|+|++|||+++||.+|||+|||+|+++||||. +.+++|++|||.|.....|..
T Consensus 2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~ 63 (372)
T PRK14300 2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAA 63 (372)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhH
Confidence 3799999999999999999999999999999993 467899999997766554444
No 31
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.22 E-value=2e-11 Score=107.17 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=45.5
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhH
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMT 110 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~ 110 (184)
|...|||++|||+++||.+|||+|||+|+++||||. +.+.+|++||+.|...
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~ 59 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDE 59 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhH
Confidence 445799999999999999999999999999999993 3567999999966543
No 32
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.8e-11 Score=107.74 Aligned_cols=56 Identities=30% Similarity=0.353 Sum_probs=47.5
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhHHHHHh
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
+..+|||++|||+++|+..|||+||++|+++||||. +++.+|.+||| ||.+..+++
T Consensus 40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYE-iLsd~eKR~ 102 (288)
T KOG0715|consen 40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYE-ILSDEEKRQ 102 (288)
T ss_pred CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHH-HhcCHHHHH
Confidence 344599999999999999999999999999999994 46789999999 555555544
No 33
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=2.6e-11 Score=109.56 Aligned_cols=53 Identities=28% Similarity=0.274 Sum_probs=46.1
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhHHHH
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFR 113 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~~l~ 113 (184)
..|+|++|||+++||.+|||+|||+|+++||||. +++.+|++||+.|.....|
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR 61 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKR 61 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHH
Confidence 4799999999999999999999999999999993 4578999999966654433
No 34
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=3e-11 Score=109.80 Aligned_cols=53 Identities=26% Similarity=0.292 Sum_probs=45.7
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHhHHHH
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFR 113 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~--------~~~~~IeaAYD~Ilm~~l~ 113 (184)
..|+|++|||+++||.+|||+|||+|+++||||. +.+.+|++|||.|.....|
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r 62 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKR 62 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhh
Confidence 4799999999999999999999999999999994 3467999999966554443
No 35
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=3.3e-11 Score=108.75 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=48.3
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHhHHHHH
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRR 114 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~--------~~~~~IeaAYD~Ilm~~l~~ 114 (184)
|...|+|++|||+++||.+||++|||+|+++||||. +++++|++||+.|.+...|.
T Consensus 2 ~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 65 (386)
T PRK14289 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65 (386)
T ss_pred CccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 446799999999999999999999999999999995 35679999999777664444
No 36
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=3.9e-11 Score=108.71 Aligned_cols=49 Identities=31% Similarity=0.332 Sum_probs=44.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHhH
Q 029971 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMT 110 (184)
Q Consensus 62 ~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~--------~~~~~IeaAYD~Ilm~ 110 (184)
.|+|++|||+++||.+|||+|||+|+++||||. +++.+|++||+.|...
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 57 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDA 57 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCH
Confidence 489999999999999999999999999999994 3567999999977655
No 37
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=7.1e-11 Score=106.08 Aligned_cols=50 Identities=28% Similarity=0.275 Sum_probs=43.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh---------hHHHHHHHHHHHHHhHH
Q 029971 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTS 111 (184)
Q Consensus 62 ~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~---------~~~~~IeaAYD~Ilm~~ 111 (184)
.|+|++|||+++||.+||++|||+|+++||||. +++++|++||+.|....
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~ 61 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQ 61 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChh
Confidence 799999999999999999999999999999994 24568999999655543
No 38
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.13 E-value=7.5e-11 Score=105.02 Aligned_cols=50 Identities=34% Similarity=0.349 Sum_probs=43.8
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhHHH
Q 029971 63 DPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSF 112 (184)
Q Consensus 63 dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~~l 112 (184)
|+|++|||+++||.+|||+||++|+++||||. +++.+|++||+.|.....
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~ 57 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEK 57 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHH
Confidence 78999999999999999999999999999995 356799999996555433
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=1.5e-10 Score=104.33 Aligned_cols=55 Identities=27% Similarity=0.290 Sum_probs=46.9
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhHHHHHh
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
..|+|++|||+++||.+||++|||+|+++||||. +++.+|+.||+.|.....|+.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~ 63 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRAR 63 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHH
Confidence 3699999999999999999999999999999994 456799999996666544433
No 40
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=1.1e-10 Score=104.69 Aligned_cols=50 Identities=28% Similarity=0.295 Sum_probs=43.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhHH
Q 029971 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTS 111 (184)
Q Consensus 62 ~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~~ 111 (184)
.|+|++|||+++||.+|||+||++|+++||||. +++.+|++||+.|....
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~ 58 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAE 58 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchh
Confidence 599999999999999999999999999999994 35678999999665443
No 41
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.7e-10 Score=104.16 Aligned_cols=50 Identities=36% Similarity=0.353 Sum_probs=45.2
Q ss_pred CcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-----hHHHHHHHHHHHHHh
Q 029971 60 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-----RSEESIEAAFEKLLM 109 (184)
Q Consensus 60 ~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-----~~~~~IeaAYD~Ilm 109 (184)
.+...|.+|||+++||.+|||+|||+|+.+||||+ +++.+|..|||.+.+
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd 56 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSD 56 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC
Confidence 35678999999999999999999999999999995 588999999996655
No 42
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.9e-10 Score=87.34 Aligned_cols=54 Identities=31% Similarity=0.338 Sum_probs=46.4
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh---------hHHHHHHHHHHHHHhHHHHH
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFRR 114 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~---------~~~~~IeaAYD~Ilm~~l~~ 114 (184)
..|+|++|||+++|+.+||++||++|+++||||. +.+.+|++||+.+.....+.
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~ 67 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA 67 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHH
Confidence 5799999999999999999999999999999993 45679999999665544444
No 43
>PHA03102 Small T antigen; Reviewed
Probab=99.00 E-value=6.4e-10 Score=90.75 Aligned_cols=54 Identities=9% Similarity=0.040 Sum_probs=47.8
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCh----hHHHHHHHHHHHHHhHHHHHh
Q 029971 62 WDPYKRLGISPYA--SEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 62 ~dPYevLGVs~~A--S~dEIk~Ayr~L~~qyh~D~----~~~~~IeaAYD~Ilm~~l~~R 115 (184)
+..|++|||+++| |.+|||+|||+++++||||+ +++++|+.||+.|.....+.+
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence 4579999999999 99999999999999999995 578899999998877666666
No 44
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=9.4e-10 Score=103.01 Aligned_cols=54 Identities=28% Similarity=0.246 Sum_probs=47.9
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh---------hHHHHHHHHHHHHHhHHHHH
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFRR 114 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~---------~~~~~IeaAYD~Ilm~~l~~ 114 (184)
..++|++|||.++|+.+|||++||+|+.|||||+ +.+..|++||+.|...+-|.
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~ 69 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERA 69 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhh
Confidence 4799999999999999999999999999999996 35789999999887766543
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.1e-09 Score=93.84 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=49.7
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh----------HHHHHHHHHHHHHhHHHHHh---hhhccc
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER----------SEESIEAAFEKLLMTSFRRR---KKEKIN 121 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~~----------~~~~IeaAYD~Ilm~~l~~R---~~Gki~ 121 (184)
..|||++|||.++|++.||++||++|..+||||.. ++.+++.||..+ -+.-+++ +.|.|+
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iL-sDeekR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQIL-SDEEKRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHhccCCCC
Confidence 45999999999999999999999999999999953 567999999954 4444444 678774
No 46
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.78 E-value=8.2e-09 Score=103.73 Aligned_cols=61 Identities=21% Similarity=0.062 Sum_probs=51.2
Q ss_pred CcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhHHHHHh--hhhcc
Q 029971 60 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR--KKEKI 120 (184)
Q Consensus 60 ~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~~l~~R--~~Gki 120 (184)
...|+|++|||+++||.+|||+||++|+++||||+ .++.+|..||+.|.....|++ +-|+-
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 45799999999999999999999999999999994 357899999997766666655 33543
No 47
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=8e-09 Score=91.30 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=48.1
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHhHHHHHh
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~--------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
..|-|.+||+.++|+.||||+|||+|+++||||. +++.+||.||. ||.+..++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~-ILsD~~kR~ 91 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYA-ILSDPTKRN 91 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHH-HhcChhhhh
Confidence 4689999999999999999999999999999883 36889999999 777777666
No 48
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.74 E-value=1.5e-08 Score=99.90 Aligned_cols=54 Identities=28% Similarity=0.235 Sum_probs=46.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh-------HHHHHHHHHHHHHhHHHHHh
Q 029971 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER-------SEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 62 ~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~~-------~~~~IeaAYD~Ilm~~l~~R 115 (184)
.|+|++|||+++|+.+|||+|||+|+++||||.. .+.+|+.||+.|.....|.+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~ 62 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRAN 62 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999999952 46789999997766554443
No 49
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.4e-08 Score=90.48 Aligned_cols=61 Identities=28% Similarity=0.213 Sum_probs=52.8
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh--------HHHHHHHHHHHHHhHHHHHh--hhhccc
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER--------SEESIEAAFEKLLMTSFRRR--KKEKIN 121 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~~--------~~~~IeaAYD~Ilm~~l~~R--~~Gki~ 121 (184)
..|+|.+|||+++|+..||++||+.++.+||||+. ++..+-.||+.+....+|.+ +-|+..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG 74 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 57999999999999999999999999999999953 57799999999988888877 445543
No 50
>PHA02624 large T antigen; Provisional
Probab=98.65 E-value=2.7e-08 Score=96.19 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=48.7
Q ss_pred cCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCC----hhHHHHHHHHHHHHHhHHHHHhh
Q 029971 61 VWDPYKRLGISPYA--SEEEIWGSRNFLLEQYTGH----ERSEESIEAAFEKLLMTSFRRRK 116 (184)
Q Consensus 61 ~~dPYevLGVs~~A--S~dEIk~Ayr~L~~qyh~D----~~~~~~IeaAYD~Ilm~~l~~R~ 116 (184)
.++.|++|||+++| +.+|||+|||+|+++|||| ++++.+|+.||+.+...--+.|.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46899999999999 9999999999999999998 46789999999977665555553
No 51
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.58 E-value=4.7e-08 Score=92.20 Aligned_cols=56 Identities=25% Similarity=0.351 Sum_probs=47.5
Q ss_pred CcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh-------------HHHHHHHHHHHHHhHHHHHh
Q 029971 60 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER-------------SEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 60 ~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~~-------------~~~~IeaAYD~Ilm~~l~~R 115 (184)
...||||+|||+.++|+++||++||+|.-+||||+. +-.+|.+||..+..+.-|+-
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~ren 164 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRREN 164 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 358999999999999999999999999999999942 34589999998877655443
No 52
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.57 E-value=1.2e-07 Score=77.90 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=43.6
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCChh-------------HHHHHHHHHHHHHhHHHHHh
Q 029971 62 WDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHER-------------SEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 62 ~dPYevLGVs~~--AS~dEIk~Ayr~L~~qyh~D~~-------------~~~~IeaAYD~Ilm~~l~~R 115 (184)
.|+|++|||++. ++.++|+++|++|.++||||.- ....||.||+.+...-.|.+
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~ 69 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAE 69 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHH
Confidence 489999999996 7889999999999999999941 23579999997655444443
No 53
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.2e-07 Score=89.30 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=46.9
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-----------hHHHHHHHHHHHHHhHHHHH
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-----------RSEESIEAAFEKLLMTSFRR 114 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-----------~~~~~IeaAYD~Ilm~~l~~ 114 (184)
..+.|.|..|+|+++||.|||++|||++.+-||||+ +.+..|..|||.+.+.+-|.
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRa 72 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRA 72 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 345689999999999999999999999999999993 24568999999777655443
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.44 E-value=1.9e-07 Score=86.39 Aligned_cols=58 Identities=29% Similarity=0.299 Sum_probs=46.7
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-----------hHHHHHHHHHHHHHhHHHHHh--hhhc
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-----------RSEESIEAAFEKLLMTSFRRR--KKEK 119 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-----------~~~~~IeaAYD~Ilm~~l~~R--~~Gk 119 (184)
-+|.|++|||.++||..||-+|||+|++++|||. .++-.|-+|-+. +.+..++| +.|.
T Consensus 393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEV-Lsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEV-LSDPEKRRQFDNGE 463 (504)
T ss_pred cchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHh-hcCHHHHhhccCCC
Confidence 4699999999999999999999999999999992 234578899985 45555555 5564
No 55
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.43 E-value=4.2e-07 Score=74.53 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=43.3
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCChh-----H------HHHHHHHHHHHHhHHHHH
Q 029971 62 WDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHER-----S------EESIEAAFEKLLMTSFRR 114 (184)
Q Consensus 62 ~dPYevLGVs~~--AS~dEIk~Ayr~L~~qyh~D~~-----~------~~~IeaAYD~Ilm~~l~~ 114 (184)
.|+|++|||+++ ++.++|+++|++|..+||||.. + ...|+.||+.+.....|.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra 67 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRA 67 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 689999999997 8899999999999999999952 1 359999999655433333
No 56
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.41 E-value=6.2e-07 Score=74.21 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=45.8
Q ss_pred CCcCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCChh-------------HHHHHHHHHHHHHhHHHHH
Q 029971 59 IKVWDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHER-------------SEESIEAAFEKLLMTSFRR 114 (184)
Q Consensus 59 m~~~dPYevLGVs~~--AS~dEIk~Ayr~L~~qyh~D~~-------------~~~~IeaAYD~Ilm~~l~~ 114 (184)
|...|+|++||+++. .+.++|+++|++|.++||||.. ....||.||+.+.....|.
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra 71 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRA 71 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence 567899999999999 5579999999999999999952 2469999999665544343
No 57
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.39 E-value=7.5e-07 Score=73.76 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=44.4
Q ss_pred cCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCChh--------H-----HHHHHHHHHHHHhHHHHHh
Q 029971 61 VWDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHER--------S-----EESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 61 ~~dPYevLGVs~~--AS~dEIk~Ayr~L~~qyh~D~~--------~-----~~~IeaAYD~Ilm~~l~~R 115 (184)
..|+|++|||++. ++.++|+++|++|.++||||.- . ...||.||..+...-.|..
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~ 74 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRAR 74 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHH
Confidence 3799999999996 6789999999999999999942 1 2699999997665444443
No 58
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.6e-06 Score=81.57 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=48.6
Q ss_pred CCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHh
Q 029971 54 PTFSRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLM 109 (184)
Q Consensus 54 ~~Fprm~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm 109 (184)
..++..+..|||.+|||..+.|.++||+.||+|+.--|||+ +..+.+..|||.|..
T Consensus 227 rl~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~ 289 (490)
T KOG0720|consen 227 RLSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGD 289 (490)
T ss_pred hhhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcc
Confidence 45656668999999999999999999999999999999995 467789999996654
No 59
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=8e-07 Score=79.12 Aligned_cols=47 Identities=23% Similarity=0.204 Sum_probs=39.2
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh-------HHHHHHHHHHHH
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER-------SEESIEAAFEKL 107 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~~-------~~~~IeaAYD~I 107 (184)
.+|=|++|||+++|+..||.+|||+|+++||||.. .+..|-.||+.+
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeil 85 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEIL 85 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccc
Confidence 57999999999999999999999999999999932 344566666633
No 60
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.3e-06 Score=80.11 Aligned_cols=55 Identities=29% Similarity=0.177 Sum_probs=45.4
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh---------hHHHHHHHHHHHHHhHHHHHh
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~---------~~~~~IeaAYD~Ilm~~l~~R 115 (184)
-.|.|++|||+++||.+||++|||+++..||||. .++.+|-+||..+-..--+.|
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 3699999999999999999999999999999993 256789999995544444444
No 61
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2.4e-06 Score=70.03 Aligned_cols=46 Identities=35% Similarity=0.341 Sum_probs=38.3
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh---------HHHHHHHHHHH
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER---------SEESIEAAFEK 106 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~~---------~~~~IeaAYD~ 106 (184)
..|.|++|||.++|+.+||++||++++++||||+. +..+|..||+.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ 56 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEV 56 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccc
Confidence 47999999999999999999999999999999952 12345557773
No 62
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.2e-05 Score=71.10 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=47.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHHHhHHHHH
Q 029971 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRR 114 (184)
Q Consensus 62 ~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~-------~~~~~IeaAYD~Ilm~~l~~ 114 (184)
...|.+|||.++|+.||++.||-.|+++||||. +.+.+|++||.+++.+.+.+
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~~k 106 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKFAK 106 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999993 35679999999999988766
No 63
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=4.9e-05 Score=59.64 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=47.9
Q ss_pred CCCCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCC----hhHHHHHHHHHHHHHh
Q 029971 57 SRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGH----ERSEESIEAAFEKLLM 109 (184)
Q Consensus 57 prm~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D----~~~~~~IeaAYD~Ilm 109 (184)
|+|+....-.||||++.+..+-||+|.|++.--.||| +.-..+||+|+|.+..
T Consensus 51 ~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~ 107 (112)
T KOG0723|consen 51 PKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEG 107 (112)
T ss_pred cccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999 4577899999996543
No 64
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=3.7e-05 Score=62.89 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=41.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh---------------HHHHHHHHHHHH
Q 029971 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER---------------SEESIEAAFEKL 107 (184)
Q Consensus 62 ~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~~---------------~~~~IeaAYD~I 107 (184)
.|+|++|||...++.++|+++|+.++.++|||.. ++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999999999943 467899999865
No 65
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00017 Score=62.57 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=48.7
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh---------HHHHHHHHHHHHHhHHHHHh
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER---------SEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~~---------~~~~IeaAYD~Ilm~~l~~R 115 (184)
.-|||++|.|.++.+.|+|++-||+|.---|||+. +++.|..||..+..+..+.|
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 57999999999999999999999999999999853 56788899998888887777
No 66
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=97.42 E-value=0.00036 Score=57.87 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=43.5
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCChh-------------HHHHHHHHHHHHHhHHHHH
Q 029971 62 WDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHER-------------SEESIEAAFEKLLMTSFRR 114 (184)
Q Consensus 62 ~dPYevLGVs~~--AS~dEIk~Ayr~L~~qyh~D~~-------------~~~~IeaAYD~Ilm~~l~~ 114 (184)
.|+|++||+++. .+..++++.|+.|.+++|||.- .-..||.||..+...-.|.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA 69 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRA 69 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHH
Confidence 699999999998 8999999999999999999931 2358999999665433333
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00029 Score=72.77 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=45.5
Q ss_pred CCCCCCCcCCcccccCCCCC----CCHHHHHHHHHHHHHHhCCCh-----hHHHHHHHHHHHHH
Q 029971 54 PTFSRIKVWDPYKRLGISPY----ASEEEIWGSRNFLLEQYTGHE-----RSEESIEAAFEKLL 108 (184)
Q Consensus 54 ~~Fprm~~~dPYevLGVs~~----AS~dEIk~Ayr~L~~qyh~D~-----~~~~~IeaAYD~Il 108 (184)
..-|.|++.+.||+|.|+-+ ..-+.|+++|++|+.+||||+ +.+++|++|||.+-
T Consensus 1273 kKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1273 KKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred cCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 34467999999999998743 333689999999999999995 46889999999764
No 68
>PF13446 RPT: A repeated domain in UCH-protein
Probab=97.07 E-value=0.00092 Score=45.98 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=42.6
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHH
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSF 112 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~~~~~~IeaAYD~Ilm~~l 112 (184)
|+.++.|+.|||+++.++|+|-.+|+.... .|+........|...|-..|-
T Consensus 2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~---~~P~~~~~~r~AL~~Ia~~R~ 52 (62)
T PF13446_consen 2 MDVEEAYEILGIDEDTDDDFIISAFQSKVN---DDPSQKDTLREALRVIAESRN 52 (62)
T ss_pred CCHHHHHHHhCcCCCCCHHHHHHHHHHHHH---cChHhHHHHHHHHHHHHHHcC
Confidence 677899999999999999999999999888 556667777888887766443
No 69
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=96.74 E-value=0.0029 Score=51.39 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCh-------------hHHHHHHHHHHHHHhHHHH
Q 029971 74 ASEEEIWGSRNFLLEQYTGHE-------------RSEESIEAAFEKLLMTSFR 113 (184)
Q Consensus 74 AS~dEIk~Ayr~L~~qyh~D~-------------~~~~~IeaAYD~Ilm~~l~ 113 (184)
-+.++|+++|++|.++||||. .....||.||+.+...-.|
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~R 55 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMR 55 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhh
Confidence 356899999999999999994 1346899999966554333
No 70
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.027 Score=51.19 Aligned_cols=61 Identities=23% Similarity=0.139 Sum_probs=48.4
Q ss_pred CCcCCcccccCCCC---CCCHHHHHHHHHHHHHHhCCChh----------HHHHHHHHHHHHHhHHHHHhhhhcc
Q 029971 59 IKVWDPYKRLGISP---YASEEEIWGSRNFLLEQYTGHER----------SEESIEAAFEKLLMTSFRRRKKEKI 120 (184)
Q Consensus 59 m~~~dPYevLGVs~---~AS~dEIk~Ayr~L~~qyh~D~~----------~~~~IeaAYD~Ilm~~l~~R~~Gki 120 (184)
-.-.|.|.+||++. -|....|.+|.++.+-+||||.. .+.-|..||| ++-++-++++=-..
T Consensus 40 Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~e-vL~D~~~R~qyDS~ 113 (379)
T COG5269 40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKARE-VLGDRKLRLQYDSN 113 (379)
T ss_pred hhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHH-HhccHHHHhhcccc
Confidence 34579999999986 58899999999999999999976 3678999999 55556555654433
No 71
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=94.64 E-value=0.038 Score=44.16 Aligned_cols=53 Identities=17% Similarity=0.081 Sum_probs=38.9
Q ss_pred CCCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCC----hhHHHHHHHHHHHHHhH
Q 029971 58 RIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGH----ERSEESIEAAFEKLLMT 110 (184)
Q Consensus 58 rm~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D----~~~~~~IeaAYD~Ilm~ 110 (184)
.|+.+...+||||++..+-|||.+.|++|..-.+|+ ...-.+|..|.|.|..+
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~E 110 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQE 110 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 588889999999999999999999999999999876 34567999999976543
No 72
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=77.52 E-value=6.6 Score=29.58 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=34.1
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHh----CCChhHHHHHHHHHHHH
Q 029971 64 PYKRLGISPYASEEEIWGSRNFLLEQY----TGHERSEESIEAAFEKL 107 (184)
Q Consensus 64 PYevLGVs~~AS~dEIk~Ayr~L~~qy----h~D~~~~~~IeaAYD~I 107 (184)
=-+..|..+-|+.+||+.|-.+.+++. ||.+...+..|+|.+.|
T Consensus 5 Ik~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~~i 52 (88)
T COG5552 5 IKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVAEI 52 (88)
T ss_pred hHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHH
Confidence 345678999999999999988888887 45566666777777765
No 73
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=67.23 E-value=24 Score=26.37 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCC
Q 029971 67 RLGISPYASEEEIWGSRNFLLEQYTGH 93 (184)
Q Consensus 67 vLGVs~~AS~dEIk~Ayr~L~~qyh~D 93 (184)
.-|..+-|++|||..|-.+-+++-.|-
T Consensus 8 L~~fePpaT~~EI~aAAlQyVRKvSG~ 34 (78)
T PF10041_consen 8 LRNFEPPATDEEIRAAALQYVRKVSGF 34 (78)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHccC
Confidence 346778899999999988888887653
No 74
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=50.93 E-value=18 Score=34.46 Aligned_cols=30 Identities=0% Similarity=0.026 Sum_probs=26.4
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCh
Q 029971 65 YKRLGISPYASEEEIWGSRNFLLEQYTGHE 94 (184)
Q Consensus 65 YevLGVs~~AS~dEIk~Ayr~L~~qyh~D~ 94 (184)
.+-.+++.--+-+.||+|||+-+.--|||+
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDK 420 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDK 420 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCccc
Confidence 445678888999999999999999999995
No 75
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=50.65 E-value=67 Score=25.13 Aligned_cols=55 Identities=5% Similarity=0.274 Sum_probs=30.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHhHHHH----HhhhhccchhHhhhhccCCCChHHHHh
Q 029971 83 RNFLLEQYTGHERSEESIEAAFEKLLMTSFR----RRKKEKINLKSRLKKQVEESPPWFKNL 140 (184)
Q Consensus 83 yr~L~~qyh~D~~~~~~IeaAYD~Ilm~~l~----~R~~Gki~v~~~IRk~~~~~ppW~~~~ 140 (184)
-..++.+.++|++...+.+.+....-.++.. .+.++.. +.+.-..+..|+|+++.
T Consensus 3 v~~~~d~~~~~~e~~~~~~~~l~~~~~~~~~~e~~~~~~~~~---~~~~~eln~~~afv~rw 61 (123)
T PF11351_consen 3 VGETIDVFRPDPEERAQAKAELQQAALEQFAAEFEAARRARF---DRMQAELNRADAFVRRW 61 (123)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHhcCccccccc
Confidence 4567888899988776666666554444322 2222222 11222345667787775
No 76
>TIGR01337 apcB allophycocyanin, beta subunit. The alpha and beta subunits of allophycocyanin form heterodimers, six of which associate into larger aggregates as part of the phycobilisome, a light-harvesting complex of phycobiliproteins and linker proteins. This model describes allophycocyanin beta subunit. Other, homologous phyobiliproteins include allophycocyanin alpha chain and the phycocyanin and phycoerythrin alpha and beta chains.
Probab=39.00 E-value=46 Score=27.61 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=40.8
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHh
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLM 109 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~~~~~~IeaAYD~Ilm 109 (184)
.++=|+.|||+-.+.-+-|+.-+..-.+.+.++.+...++..-+|.++.
T Consensus 112 lrE~y~~LgvP~~~~v~al~~mk~~~~~~~~~~~~~~~e~~~yFd~li~ 160 (167)
T TIGR01337 112 LKETYNSLGVPIGPTVRAIQIMKEVIISLVGPDNDAGKEIGEPFDYMCS 160 (167)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcHhHHHHHHHHHHHHHH
Confidence 3578999999999999988888887777777776677899999997765
No 77
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.28 E-value=26 Score=28.54 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=29.3
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHh
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQY 90 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qy 90 (184)
|+.+..-.||+|++.-+.|||.+-|.+|-+-.
T Consensus 56 iTlqEa~qILnV~~~ln~eei~k~yehLFevN 87 (132)
T KOG3442|consen 56 ITLQEAQQILNVKEPLNREEIEKRYEHLFEVN 87 (132)
T ss_pred ccHHHHhhHhCCCCCCCHHHHHHHHHHHHhcc
Confidence 77888999999999999999999999998754
No 78
>PTZ00352 60S ribosomal protein L13; Provisional
Probab=34.81 E-value=72 Score=27.93 Aligned_cols=66 Identities=21% Similarity=0.150 Sum_probs=43.0
Q ss_pred CCCCCCCcCCccc-ccCCCCCCCHHHHHH--HHHHHHHHhCCC----------hh-HHHHHHHHHHHHHhHHHHHhhhhc
Q 029971 54 PTFSRIKVWDPYK-RLGISPYASEEEIWG--SRNFLLEQYTGH----------ER-SEESIEAAFEKLLMTSFRRRKKEK 119 (184)
Q Consensus 54 ~~Fprm~~~dPYe-vLGVs~~AS~dEIk~--Ayr~L~~qyh~D----------~~-~~~~IeaAYD~Ilm~~l~~R~~Gk 119 (184)
-.|||-.. -|=+ +-||..|+|.||++. |-..+...+-|= +- ..+.=-.||..|-+++...|..|.
T Consensus 122 vlFPrk~~-k~kkG~~gip~Dss~ee~~~~~a~~q~~g~vmPi~~~~~~~~~r~it~eek~~~Ay~tLR~aR~~ar~~G~ 200 (212)
T PTZ00352 122 VLFPRKGK-KPKKGFAGIPADTSKEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGK 200 (212)
T ss_pred eeecCCCC-ccccCCCCCCCCCCHHHHHHHHHHHhhcCceecccccccccccccCCHHHHHhhHHHHHHHHHHHHHHhhH
Confidence 56997422 3333 358999999999998 654332111111 11 234455899999999999998885
Q ss_pred c
Q 029971 120 I 120 (184)
Q Consensus 120 i 120 (184)
-
T Consensus 201 r 201 (212)
T PTZ00352 201 K 201 (212)
T ss_pred H
Confidence 3
No 79
>PRK00907 hypothetical protein; Provisional
Probab=34.66 E-value=72 Score=24.11 Aligned_cols=43 Identities=19% Similarity=0.091 Sum_probs=32.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCC--hh----------------------HHHHHHHHHHHHH
Q 029971 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGH--ER----------------------SEESIEAAFEKLL 108 (184)
Q Consensus 62 ~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D--~~----------------------~~~~IeaAYD~Il 108 (184)
.=||++.|... +++..+-...+++|.|| .. ..+++++-|..|.
T Consensus 17 ~fpiKVmG~a~----~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~ 83 (92)
T PRK00907 17 TFELSAMGTAE----RGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALR 83 (92)
T ss_pred CCeEEEEEcCc----hhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHh
Confidence 35899999876 77888888888888874 11 3688999998764
No 80
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=32.48 E-value=67 Score=30.27 Aligned_cols=38 Identities=29% Similarity=0.301 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHhhhh
Q 029971 73 YASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKE 118 (184)
Q Consensus 73 ~AS~dEIk~Ayr~L~~qyh~D~~~~~~IeaAYD~Ilm~~l~~R~~G 118 (184)
--|.+||++|+..+ |++..+.|+.|++.| +++.++|..
T Consensus 36 ~vs~~ei~~A~~~~------~~~~~~ai~~A~~nI--~~fh~~q~~ 73 (390)
T cd06572 36 RVSEEEIDAAYAAV------DPELKEAIELAAENI--RAFHEAQLP 73 (390)
T ss_pred ccCHHHHHHHHhcC------CHHHHHHHHHHHHHH--HHHHHHhCC
Confidence 45789999999877 788899999999988 455555544
No 81
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=32.25 E-value=3.1e+02 Score=23.61 Aligned_cols=20 Identities=15% Similarity=-0.180 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 029971 148 PKDVIFRRLFLFAFMGGWSI 167 (184)
Q Consensus 148 s~~~i~~~~~ifa~L~~wti 167 (184)
..+-|.+++++-|+++|..+
T Consensus 341 dL~~IrinGallG~liG~~~ 360 (367)
T PF04286_consen 341 DLQWIRINGALLGGLIGLLQ 360 (367)
T ss_pred HhHhhhhhhHHHHHHHHHHH
Confidence 66778899999999988774
No 82
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=32.12 E-value=67 Score=30.51 Aligned_cols=37 Identities=32% Similarity=0.340 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHhhh
Q 029971 73 YASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKK 117 (184)
Q Consensus 73 ~AS~dEIk~Ayr~L~~qyh~D~~~~~~IeaAYD~Ilm~~l~~R~~ 117 (184)
.-|.+||++||.++ |++..+.|+.|++.| .++.++|+
T Consensus 49 ~Vs~~ei~~A~~~l------~~~~~~Ai~~A~~~I--~~fh~~q~ 85 (412)
T PF00815_consen 49 RVSEEEIAAAYAKL------DPELREAIEQAAENI--RAFHEAQL 85 (412)
T ss_dssp B--HHHHHHHHHHS-------HHHHHHHHHHHHHH--HHHHHTT-
T ss_pred EecHHHHHhhhhcC------CHHHHHHHHHHHHHH--HHHHHHhc
Confidence 34789999999988 788899999999998 44555544
No 83
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=31.33 E-value=75 Score=30.07 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHhhhh
Q 029971 74 ASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKE 118 (184)
Q Consensus 74 AS~dEIk~Ayr~L~~qyh~D~~~~~~IeaAYD~Ilm~~l~~R~~G 118 (184)
-|.+||+.||.++ |++..+.|+.|++.|- ++.++|+.
T Consensus 33 vs~~ei~~A~~~~------~~~~~~ai~~A~~~I~--~fh~~q~~ 69 (393)
T TIGR00069 33 VSEEEIEAAYAAV------DPELKEALELAAENIR--AFHEAQLP 69 (393)
T ss_pred cCHHHHHHHHHcC------CHHHHHHHHHHHHHHH--HHHHHhCC
Confidence 4789999999875 7888899999999884 45455443
No 84
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=30.48 E-value=77 Score=30.25 Aligned_cols=38 Identities=32% Similarity=0.370 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHhhhh
Q 029971 73 YASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKE 118 (184)
Q Consensus 73 ~AS~dEIk~Ayr~L~~qyh~D~~~~~~IeaAYD~Ilm~~l~~R~~G 118 (184)
.-|.+||++||..+ |++..+.|+.|++.| +++.++|..
T Consensus 64 ~Vs~~ei~~A~~~v------~~~~~~ai~~A~~~I--~~Fh~~q~~ 101 (425)
T PRK00877 64 RVSEEEIEAAYERL------DPELREALEEAAENI--RAFHEAQKP 101 (425)
T ss_pred eeCHHHHHHHHhcC------CHHHHHHHHHHHHHH--HHHHHHhCC
Confidence 35789999999875 788889999999988 455555544
No 85
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=30.43 E-value=37 Score=24.81 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=10.1
Q ss_pred ChhHHHHHHHHHHHHHh
Q 029971 93 HERSEESIEAAFEKLLM 109 (184)
Q Consensus 93 D~~~~~~IeaAYD~Ilm 109 (184)
+++.+..|.+||..|..
T Consensus 29 s~~~i~~l~~ayr~l~~ 45 (83)
T PF13720_consen 29 SKEEISALRRAYRILFR 45 (83)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 45566667777776544
No 86
>CHL00089 apcF allophycocyanin beta 18 subunit
Probab=30.06 E-value=74 Score=26.56 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=40.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHh
Q 029971 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYT-GHERSEESIEAAFEKLLM 109 (184)
Q Consensus 62 ~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh-~D~~~~~~IeaAYD~Ilm 109 (184)
+.=|+.|||+..+.-+-|+.-+..-++.+. +|.+..+.|..-+|.++.
T Consensus 114 rE~Y~~LgvP~~~~i~al~~mk~~~~~~~~~~~~~~~~~~~~yFd~l~~ 162 (169)
T CHL00089 114 KDTYNSLGVPIAPTVRSIELLKEIIKEEIKSQNIDAHDYIDEPFQYMIK 162 (169)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 567999999999999999888888888777 455667899999997654
No 87
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=30.04 E-value=1.1e+02 Score=29.45 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHhhhh
Q 029971 74 ASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKE 118 (184)
Q Consensus 74 AS~dEIk~Ayr~L~~qyh~D~~~~~~IeaAYD~Ilm~~l~~R~~G 118 (184)
.|.+||..||+++ |++..+.|+.|++.| +.+.++|+.
T Consensus 61 Vs~~ei~aA~~~v------~~~~~eai~~A~~~I--~~fH~~Q~p 97 (425)
T COG0141 61 VSAAEIDAAYQRL------DPEVKEALEVAAENI--EAFHEAQLP 97 (425)
T ss_pred cCHHHHHHHHHhC------CHHHHHHHHHHHHHH--HHHHHhhCC
Confidence 6889999999887 777888888888887 556666554
No 88
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=29.31 E-value=69 Score=21.19 Aligned_cols=29 Identities=14% Similarity=0.089 Sum_probs=16.7
Q ss_pred CChHHHHhhhhccCCCHHHHHHHHHHHHH
Q 029971 133 SPPWFKNLLNFVELPPKDVIFRRLFLFAF 161 (184)
Q Consensus 133 ~ppW~~~~~~~fe~Ps~~~i~~~~~ifa~ 161 (184)
.++|.+.+++.|.-|-.-.++..++++.+
T Consensus 33 ~~s~~~~~l~~~~~p~~~iL~~~a~is~~ 61 (64)
T smart00831 33 KRSPLLRFLRQFHNPLIYILLAAAVLSAL 61 (64)
T ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 35788999888754444444444444433
No 89
>PRK13770 histidinol dehydrogenase; Provisional
Probab=29.19 E-value=86 Score=29.90 Aligned_cols=36 Identities=19% Similarity=0.452 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHhhh
Q 029971 74 ASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKK 117 (184)
Q Consensus 74 AS~dEIk~Ayr~L~~qyh~D~~~~~~IeaAYD~Ilm~~l~~R~~ 117 (184)
-|.+||++||.++ |++..+.|+.|++.|- ++.++|.
T Consensus 57 Vs~~ei~~A~~~v------~~~~~~ai~~A~~nI~--~fh~~q~ 92 (416)
T PRK13770 57 ISHEQIKAAFDTL------DEKTKQALQQSYERIK--AYQESIK 92 (416)
T ss_pred eCHHHHHHHHHcC------CHHHHHHHHHHHHHHH--HHHHHhC
Confidence 4889999999886 7788899999999883 4444443
No 90
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=28.66 E-value=90 Score=29.83 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHhhh
Q 029971 73 YASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKK 117 (184)
Q Consensus 73 ~AS~dEIk~Ayr~L~~qyh~D~~~~~~IeaAYD~Ilm~~l~~R~~ 117 (184)
--|.+||++||.++ |++..+.|+.|++.|. ++.++|.
T Consensus 57 ~Vs~~ei~~A~~~v------~~~~~~ai~~A~~nI~--~fh~~q~ 93 (426)
T PRK12447 57 RLSAAEIDAAVAKV------PEQVKEDIRFAQDQVR--RFAEAQR 93 (426)
T ss_pred ccCHHHHHHHHhhC------CHHHHHHHHHHHHHHH--HHHHHhc
Confidence 35789999999876 7788899999999883 4444443
No 91
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=28.53 E-value=85 Score=22.96 Aligned_cols=46 Identities=13% Similarity=-0.050 Sum_probs=31.2
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhH
Q 029971 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMT 110 (184)
Q Consensus 61 ~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~~~~~~IeaAYD~Ilm~ 110 (184)
.+|||..++-=.+.+|..+-+. +++.+-+...-.+|.++...++.+
T Consensus 41 ~~nPY~L~~~i~gi~F~~aD~i----A~~~g~~~~d~~Ri~A~i~~~L~~ 86 (94)
T PF14490_consen 41 KENPYRLIEDIDGIGFKTADKI----ALKLGIEPDDPRRIRAAILYVLRE 86 (94)
T ss_dssp HH-STCCCB-SSSSBHHHHHHH----HHTTT--TT-HHHHHHHHHHHHHH
T ss_pred HHChHHHHHHccCCCHHHHHHH----HHHcCCCCCCHHHHHHHHHHHHHH
Confidence 5799999995589999887654 445565666677788888777766
No 92
>PRK07668 hypothetical protein; Validated
Probab=28.16 E-value=4.1e+02 Score=23.60 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHhhhhccchhHhhhhccCCCC-hHHHHhhhhccCCC-HHHHHHHHHH
Q 029971 81 GSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKEKINLKSRLKKQVEESP-PWFKNLLNFVELPP-KDVIFRRLFL 158 (184)
Q Consensus 81 ~Ayr~L~~qyh~D~~~~~~IeaAYD~Ilm~~l~~R~~Gki~v~~~IRk~~~~~p-pW~~~~~~~fe~Ps-~~~i~~~~~i 158 (184)
+..+.|..+.-+|++..+-+++.-|.++. .-++|+- + ++-.+..| .|.+.+....+.+. ..-.....++
T Consensus 12 ~L~~yL~~~glseeeieeiL~Ei~~hLlE----gQk~GkT-A----~~IfG~sPk~yA~EL~~~~~~~~~~~~~~l~~~i 82 (254)
T PRK07668 12 DTRVYLIAKGIKEEDIESFLEDAELHLIE----GEKDGKT-V----EDIFGDSPKEYANELVKEMEVDRKENIKLILFII 82 (254)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHH----HHHcCCc-H----HHHhCCCHHHHHHHHhcccCCCcchHHHHHHHHH
Confidence 33344433334556666666666665555 4455653 1 11122234 35777777545544 3444466788
Q ss_pred HHHHHHHHH
Q 029971 159 FAFMGGWSI 167 (184)
Q Consensus 159 fa~L~~wti 167 (184)
.+.++.|++
T Consensus 83 i~~l~~~~i 91 (254)
T PRK07668 83 IGILSFWII 91 (254)
T ss_pred HHHHHHHHH
Confidence 888888885
No 93
>KOG3767 consensus Sideroflexin [General function prediction only]
Probab=26.98 E-value=55 Score=30.33 Aligned_cols=30 Identities=17% Similarity=0.478 Sum_probs=26.8
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHhCCC
Q 029971 64 PYKRLGISPYASEEEIWGSRNFLLEQYTGH 93 (184)
Q Consensus 64 PYevLGVs~~AS~dEIk~Ayr~L~~qyh~D 93 (184)
-|+.=.++++-+.||+++|++....-||||
T Consensus 56 ~yk~G~~~p~~t~~~lW~Akkl~dS~~HPD 85 (328)
T KOG3767|consen 56 DYKAGKVPPGLTDDELWKAKKLYDSTFHPD 85 (328)
T ss_pred hhccCCcCCCCcHHHHHHHHHHHhcccCCC
Confidence 466667888889999999999999999999
No 94
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.39 E-value=1e+02 Score=25.03 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhCCChh-------------HHHHHHHHHHHHHhHHHHHh
Q 029971 77 EEIWGSRNFLLEQYTGHER-------------SEESIEAAFEKLLMTSFRRR 115 (184)
Q Consensus 77 dEIk~Ayr~L~~qyh~D~~-------------~~~~IeaAYD~Ilm~~l~~R 115 (184)
+-.+.-|+.+.+.||||.. ....++.||+.+...-++..
T Consensus 18 ~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~ 69 (174)
T COG1076 18 DALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAE 69 (174)
T ss_pred hHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4556668889999999832 34689999997776555544
No 95
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=26.31 E-value=1.6e+02 Score=20.74 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q 029971 76 EEEIWGSRNFLLEQYTGHERSEESIEAAFEKL 107 (184)
Q Consensus 76 ~dEIk~Ayr~L~~qyh~D~~~~~~IeaAYD~I 107 (184)
.+.|++..+..+++|+.|. .+..++|.|
T Consensus 8 ~~~i~~~l~~~~~~y~~~~----~~~~~~d~i 35 (99)
T cd03166 8 MSEFNDSFNQMISNYNKTN----DFRKILDRM 35 (99)
T ss_pred HHHHHHHHHHHHHHcCCCH----HHHHHHHHH
Confidence 4677777788888888752 467777754
No 96
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=25.95 E-value=82 Score=24.53 Aligned_cols=32 Identities=16% Similarity=0.024 Sum_probs=26.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCChhHHH
Q 029971 67 RLGISPYASEEEIWGSRNFLLEQYTGHERSEE 98 (184)
Q Consensus 67 vLGVs~~AS~dEIk~Ayr~L~~qyh~D~~~~~ 98 (184)
=.|-.++++.++|..+.++.+++++-+.+.+.
T Consensus 7 GIGcr~~~~~e~i~~ai~~~L~~~~l~~~si~ 38 (126)
T PRK07027 7 GIGCRRGVPAEQIEAAIRAALAQRPLASADVR 38 (126)
T ss_pred eeccCCCCCHHHHHHHHHHHHHHcCCCHHHhh
Confidence 35678999999999999999999987766544
No 97
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=25.53 E-value=34 Score=28.46 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=30.6
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHHHHhCCC
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGH 93 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D 93 (184)
.+.++==+.|||++.+=.+-+++|-++|+..|-++
T Consensus 179 ~~l~dLA~~lGISkst~~ehLRrAe~Kl~~~~~~~ 213 (215)
T COG3413 179 VSLKDLAKELGISKSTLSEHLRRAERKLIEAYFDE 213 (215)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 66677889999999999999999999999888654
No 98
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=23.89 E-value=2.1e+02 Score=18.46 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHhhhhcc
Q 029971 75 SEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKEKI 120 (184)
Q Consensus 75 S~dEIk~Ayr~L~~qyh~D~~~~~~IeaAYD~Ilm~~l~~R~~Gki 120 (184)
|+|.|++|...+. .+. ..+.+.-..|. |-..-|++|.+|+.
T Consensus 1 tee~l~~Ai~~v~---~g~-~S~r~AA~~yg-Vp~sTL~~r~~g~~ 41 (45)
T PF05225_consen 1 TEEDLQKAIEAVK---NGK-MSIRKAAKKYG-VPRSTLRRRLRGKP 41 (45)
T ss_dssp -HHHHHHHHHHHH---TTS-S-HHHHHHHHT---HHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH---hCC-CCHHHHHHHHC-cCHHHHHHHHcCCC
Confidence 4566777765554 222 56666666666 55556666666654
No 99
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.77 E-value=1.5e+02 Score=25.97 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHh
Q 029971 74 ASEEEIWGSRNFLLEQYTGH---ERSEESIEAAFEKLLM 109 (184)
Q Consensus 74 AS~dEIk~Ayr~L~~qyh~D---~~~~~~IeaAYD~Ilm 109 (184)
+.++|+|.+|+....+-..= +....++|.+||.++.
T Consensus 56 ~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~llr 94 (211)
T COG3167 56 AEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILLR 94 (211)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 67899999999988876543 4567899999996643
No 100
>PF07793 DUF1631: Protein of unknown function (DUF1631); InterPro: IPR012434 The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.
Probab=23.68 E-value=3.4e+02 Score=26.68 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhH
Q 029971 76 EEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMT 110 (184)
Q Consensus 76 ~dEIk~Ayr~L~~qyh~D~~~~~~IeaAYD~Ilm~ 110 (184)
.+.|+++..++...|.+|...++++...++..+.+
T Consensus 429 ~~~i~~~V~~i~~~f~~d~~vf~~~l~el~~~~~~ 463 (729)
T PF07793_consen 429 YQKIEEVVDRILQEFEGDPAVFEELLQELEAFLEQ 463 (729)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 67899999999999999988888777777766544
No 101
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=23.02 E-value=42 Score=26.03 Aligned_cols=32 Identities=19% Similarity=0.028 Sum_probs=22.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCC
Q 029971 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGH 93 (184)
Q Consensus 62 ~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D 93 (184)
++-=++||++++.-..-+.+|+++|.+.+.+|
T Consensus 132 ~eIA~~lgis~~tV~~~l~Rar~~Lr~~l~~~ 163 (164)
T PRK12547 132 EDAAAICGCAVGTIKSRVSRARNRLQELLKVD 163 (164)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 34446777777777777777777777776665
No 102
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=22.69 E-value=1.2e+02 Score=26.35 Aligned_cols=44 Identities=23% Similarity=0.288 Sum_probs=28.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHH-HHHhCCChhHHHHHHHHHHHH
Q 029971 62 WDPYKRLGISPYASEEEIWGSRNFL-LEQYTGHERSEESIEAAFEKL 107 (184)
Q Consensus 62 ~dPYevLGVs~~AS~dEIk~Ayr~L-~~qyh~D~~~~~~IeaAYD~I 107 (184)
-||..+|||+.. .|+=++-|-.| +++.+.+.++.-+-+.|||+-
T Consensus 37 LdPLtaLGIeAr--sd~ERrryAEl~vk~E~~rvekeLA~qrayd~A 81 (200)
T TIGR03759 37 LDPLTALGIEAR--SDEERRRYAELWVKQEAQRVEKELAFQRAYDAA 81 (200)
T ss_pred CChhhhhccccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999754 34445556554 444555556666777788743
No 103
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=22.46 E-value=3.9e+02 Score=21.24 Aligned_cols=17 Identities=12% Similarity=0.102 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029971 150 DVIFRRLFLFAFMGGWS 166 (184)
Q Consensus 150 ~~i~~~~~ifa~L~~wt 166 (184)
.-.....+++.++..|.
T Consensus 91 K~~~~~~v~~i~i~~wi 107 (168)
T PF01956_consen 91 KPMFVTMVPQIPIFYWI 107 (168)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 33445555556666665
No 104
>PF08876 DUF1836: Domain of unknown function (DUF1836); InterPro: IPR014975 This group of proteins are functionally uncharacterised.
Probab=22.15 E-value=76 Score=24.46 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 029971 71 SPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEK 106 (184)
Q Consensus 71 s~~AS~dEIk~Ayr~L~~qyh~D~~~~~~IeaAYD~ 106 (184)
..--|.+||++........+..++ ..++.||+.
T Consensus 72 K~vlsi~dI~~ll~~~~~~~~~~~---~~~~~~Y~~ 104 (105)
T PF08876_consen 72 KQVLSIDDIKKLLDLQFNNYEDDE---ISLEDAYNY 104 (105)
T ss_pred HccCCHHHHHHHHHHHHhcccccC---CCHHHHHhc
Confidence 345689999999999998887776 777888873
No 105
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=22.06 E-value=1.2e+02 Score=23.28 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=30.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh------------------------HHHHHHHHHHHH
Q 029971 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER------------------------SEESIEAAFEKL 107 (184)
Q Consensus 62 ~dPYevLGVs~~AS~dEIk~Ayr~L~~qyh~D~~------------------------~~~~IeaAYD~I 107 (184)
.=||++.|....+=.|+|- +++++|.|+.. .++++|++|..|
T Consensus 15 ~F~~KVmG~a~~~l~~~vv----~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL 80 (90)
T COG2921 15 TFTYKVMGAAGPELEDQVV----EVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRATNIEQVEALYREL 80 (90)
T ss_pred cceeeehcccchhHHHHHH----HHHHHHCCcccCceeeeccCCCCceEEEEEEEEECCHHHHHHHHHHH
Confidence 3589999988766666554 57777877622 378999999876
No 106
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=21.18 E-value=64 Score=16.30 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=6.7
Q ss_pred HHHHHHHHHHH
Q 029971 97 EESIEAAFEKL 107 (184)
Q Consensus 97 ~~~IeaAYD~I 107 (184)
.++|+.||+.|
T Consensus 3 ~~~V~~aY~~l 13 (14)
T PF07709_consen 3 FEKVKNAYEQL 13 (14)
T ss_pred HHHHHHHHHhc
Confidence 45666677643
No 107
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.14 E-value=2.7e+02 Score=25.09 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=32.9
Q ss_pred CcccccCCCC-CCCHHHHHHHHHHHHHHh-------CCC-----------hhHHHHHHHHHHHHH
Q 029971 63 DPYKRLGISP-YASEEEIWGSRNFLLEQY-------TGH-----------ERSEESIEAAFEKLL 108 (184)
Q Consensus 63 dPYevLGVs~-~AS~dEIk~Ayr~L~~qy-------h~D-----------~~~~~~IeaAYD~Il 108 (184)
+=++.||+++ ..+.||+++-.++++++- +.| ++-.+++..+|+.+.
T Consensus 83 pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~ 147 (318)
T PF12725_consen 83 PLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLA 147 (318)
T ss_pred CHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHH
Confidence 3467899998 899999999988877654 233 223457777887653
No 108
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=20.71 E-value=4.7e+02 Score=21.66 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHH
Q 029971 79 IWGSRNFLLEQYTGHERSEESIEAAFEKLLMTS 111 (184)
Q Consensus 79 Ik~Ayr~L~~qyh~D~~~~~~IeaAYD~Ilm~~ 111 (184)
+-+..+.|.+.--.|++..+-+++..+.|+..+
T Consensus 10 ~~~l~~~L~~~~~~e~~~e~~L~eil~~LleaQ 42 (206)
T PF06570_consen 10 IFDLRKYLRSSGVSEEEIEELLEEILPHLLEAQ 42 (206)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 444555553333455666666777777666643
No 109
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=20.02 E-value=35 Score=23.36 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=24.1
Q ss_pred CCcCCcccccCCCCCCCHHHHHHHHHHHH
Q 029971 59 IKVWDPYKRLGISPYASEEEIWGSRNFLL 87 (184)
Q Consensus 59 m~~~dPYevLGVs~~AS~dEIk~Ayr~L~ 87 (184)
.+..+==+.|||++.+=.+-+++|-++++
T Consensus 24 ~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 24 ITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 55566778899999999999999988876
Done!