BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029973
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P34091|RL6_MESCR 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6
PE=2 SV=1
Length = 234
Score = 293 bits (751), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/181 (83%), Positives = 165/181 (91%)
Query: 2 APKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKP 61
A KQ KP VSRNPEL+RGIGK+SRSKMYHKRGLWAIKAKNGGVFP+H PK + EKP
Sbjct: 3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKP 62
Query: 62 PKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVS 121
PKFYPADDVKKPL+NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+
Sbjct: 63 PKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVT 122
Query: 122 GPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESEK 181
GPFK+NGVPLRRVNQ+YVI TSTKVDISGVNV+KFDDKYF K+ E+K KKGE EFFE+EK
Sbjct: 123 GPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEK 182
Query: 182 E 182
+
Sbjct: 183 K 183
>sp|Q9FZ76|RL61_ARATH 60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2
SV=1
Length = 233
Score = 282 bits (722), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 135/159 (84%), Positives = 149/159 (93%)
Query: 8 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKPPKFYPA 67
P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD +PK AP EKP KFYPA
Sbjct: 8 PKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPA 67
Query: 68 DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKIN 127
+DVKKPLVN+RKPKPTKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKIN
Sbjct: 68 EDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKIN 127
Query: 128 GVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVE 166
GVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K E
Sbjct: 128 GVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAE 166
>sp|Q9C9C5|RL63_ARATH 60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=2
SV=1
Length = 233
Score = 281 bits (719), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/166 (83%), Positives = 149/166 (89%)
Query: 1 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK 60
M KQ P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD K K AP EK
Sbjct: 1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60
Query: 61 PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
PPKFYPA+DVKKPL N+R KPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV
Sbjct: 61 PPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120
Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVE 166
+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K E
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAE 166
>sp|Q9C9C6|RL62_ARATH 60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2
SV=1
Length = 233
Score = 276 bits (707), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 136/166 (81%), Positives = 147/166 (88%)
Query: 1 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK 60
M KQ +V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD K K AP EK
Sbjct: 1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60
Query: 61 PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
PPKFYPA+DVKKPL N+R KP KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV
Sbjct: 61 PPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120
Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVE 166
+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K E
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAE 166
>sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3
Length = 288
Score = 162 bits (411), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 97/199 (48%), Positives = 121/199 (60%), Gaps = 22/199 (11%)
Query: 6 GKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKP---- 61
G+P SRNP L+RGIG++SRS MY ++ L+ K K K A KP
Sbjct: 40 GQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGD 99
Query: 62 -------------PKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLIILAGRFKG 104
P++YP +DV +K L + +KP KLRASITPGTVLIIL GR +G
Sbjct: 100 KNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTVLIILTGRHRG 159
Query: 105 KRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAK 163
KRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DIS V + K D YF K
Sbjct: 160 KRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKK 219
Query: 164 EVERKKKKGENEFFESEKE 182
+ RK + E E F++EKE
Sbjct: 220 KKLRKPRHQEGEIFDTEKE 238
>sp|Q2YGT9|RL6_PIG 60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3
Length = 284
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/197 (47%), Positives = 120/197 (60%), Gaps = 22/197 (11%)
Query: 8 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKP------ 61
P SRNP L+RGIG++SRS MY ++ L+ K K + A KP
Sbjct: 38 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKN 97
Query: 62 -----------PKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLIILAGRFKGKR 106
P++YP +DV +K L + +KP KLRASITPGT+LIIL GR +GKR
Sbjct: 98 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKR 157
Query: 107 VVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEV 165
V+FLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DISGV + + D YF K+
Sbjct: 158 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 217
Query: 166 ERKKKKGENEFFESEKE 182
RK + E E F++EKE
Sbjct: 218 LRKPRHQEGEIFDTEKE 234
>sp|Q58DQ3|RL6_BOVIN 60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3
Length = 287
Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/197 (47%), Positives = 120/197 (60%), Gaps = 22/197 (11%)
Query: 8 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKP------ 61
P SRNP L+RGIG++SRS MY ++ L+ K K + A KP
Sbjct: 41 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKN 100
Query: 62 -----------PKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLIILAGRFKGKR 106
P++YP +DV +K L + +KP KLRASITPGT+LIIL GR +GKR
Sbjct: 101 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKR 160
Query: 107 VVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEV 165
VVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DISGV + + D YF K+
Sbjct: 161 VVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKK 220
Query: 166 ERKKKKGENEFFESEKE 182
RK + E E F++E+E
Sbjct: 221 LRKPRHQEGEIFDTERE 237
>sp|Q02878|RL6_HUMAN 60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3
Length = 288
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/195 (47%), Positives = 118/195 (60%), Gaps = 22/195 (11%)
Query: 10 VSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKP-------- 61
SRNP L+RGIG++SRS MY ++ ++ K K K A KP
Sbjct: 44 CSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGG 103
Query: 62 ---------PKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLIILAGRFKGKRVV 108
P++YP +DV +K L + +KP KLRASITPGT+LIIL GR +GKRVV
Sbjct: 104 TRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVV 163
Query: 109 FLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVER 167
FLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DIS V + K D YF K+ R
Sbjct: 164 FLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLR 223
Query: 168 KKKKGENEFFESEKE 182
K + E E F++EKE
Sbjct: 224 KPRHQEGEIFDTEKE 238
>sp|P47911|RL6_MOUSE 60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3
Length = 296
Score = 154 bits (389), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/205 (46%), Positives = 118/205 (57%), Gaps = 41/205 (20%)
Query: 10 VSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNG 42
SRNP L+RGIG++SRS MY ++ L+ K KNG
Sbjct: 51 CSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNG 110
Query: 43 GVFPRHDPKPKAAAPAEKPPKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLIIL 98
G K P++YP +DV +K L + +KP +LR+SITPGTVLIIL
Sbjct: 111 GT---------RVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIIL 161
Query: 99 AGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FD 157
GR +GKRVVFLKQL SGLLLV+GP IN VPLRR +Q +VI TSTKVDIS V + K
Sbjct: 162 TGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLT 221
Query: 158 DKYFAKEVERKKKKGENEFFESEKE 182
D YF K+ RK + E E F++EKE
Sbjct: 222 DAYFKKKQLRKPRHQEGEIFDTEKE 246
>sp|P21533|RL6_RAT 60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5
Length = 298
Score = 153 bits (387), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 119/207 (57%), Gaps = 41/207 (19%)
Query: 8 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------K 40
P SRNP L+RGIG++SRS MY ++ L+ K K
Sbjct: 51 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDK 110
Query: 41 NGGVFPRHDPKPKAAAPAEKPPKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLI 96
NGG K P++YP +DV +K L + +KP +LR+SITPGTVLI
Sbjct: 111 NGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLI 161
Query: 97 ILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK- 155
IL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTKVDIS V + K
Sbjct: 162 ILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKH 221
Query: 156 FDDKYFAKEVERKKKKGENEFFESEKE 182
D YF K+ RK + E E F++EKE
Sbjct: 222 LTDAYFKKKPLRKPRHQEGEIFDTEKE 248
>sp|P0DJ56|RL6_TETTS 60S ribosomal protein L6 OS=Tetrahymena thermophila (strain SB210)
GN=RPL6 PE=1 SV=1
Length = 191
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/123 (59%), Positives = 90/123 (73%), Gaps = 5/123 (4%)
Query: 60 KPPKFYPADDVKKPLVNK--RKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGL 117
K K+Y ADD P + +K TKLR I PGTVLI+LAGRF+GKRVVFLKQL SGL
Sbjct: 14 KISKWYKADDEATPFHRRQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLKSGL 73
Query: 118 LLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFF 177
LLV+GP+K+NGVPL+RVNQ+Y + TSTKVD++GVN KF+D YF +E RK K F
Sbjct: 74 LLVTGPYKVNGVPLKRVNQAYTLSTSTKVDLTGVNTAKFEDDYFGREKARKNHKN---LF 130
Query: 178 ESE 180
++E
Sbjct: 131 KAE 133
>sp|P05739|RL6B_YEAST 60S ribosomal protein L6-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL6B PE=1 SV=4
Length = 176
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 84/105 (80%)
Query: 58 AEKPPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGL 117
A++ PK+YP++DV P ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L
Sbjct: 3 AQQAPKWYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNT 62
Query: 118 LLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFA 162
LLV+GPFK+NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFA
Sbjct: 63 LLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFA 107
>sp|Q02326|RL6A_YEAST 60S ribosomal protein L6-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL6A PE=1 SV=2
Length = 176
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 83/105 (79%)
Query: 58 AEKPPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGL 117
A+K PK+YP++DV ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L
Sbjct: 3 AQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNT 62
Query: 118 LLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFA 162
LL+SGPFK+NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFA
Sbjct: 63 LLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFA 107
>sp|Q54D63|RL6_DICDI 60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1
SV=1
Length = 236
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 84/123 (68%), Gaps = 3/123 (2%)
Query: 58 AEKPPKFYPADDVK-KPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSG 116
A K KF P+ + + K+ + LR SITPGTVLIILAGRF GKRVV LKQL SG
Sbjct: 59 AAKASKFAPSIPAEIRSTAAKKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSG 118
Query: 117 LLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVERKKKKGENE 175
L+L++GPFK+NGVPLRR++Q YVI TSTK+D+S V V +D YFA E ++ K E
Sbjct: 119 LILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAE-KKSTTKSEGA 177
Query: 176 FFE 178
FF
Sbjct: 178 FFS 180
>sp|P47991|RL6_CAEEL 60S ribosomal protein L6 OS=Caenorhabditis elegans GN=rpl-6 PE=1
SV=1
Length = 217
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 108/191 (56%), Gaps = 35/191 (18%)
Query: 1 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK 60
M K+ P +SRN +L G+ +FS S++ K+G EK
Sbjct: 1 MVGKRNLPVISRNFDLSPGVLRFSASRLRLKKG-------------------------EK 35
Query: 61 PPKFYPADDVKKPLVNKR-------KPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL 113
PKF K P + + K LR ++TPGTVLI+LAGR KGKRVVFLKQL
Sbjct: 36 KPKFTKDTSAKLPKLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQL 95
Query: 114 P-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVERKKKK 171
P SGLLLV+GP KING PLRR+ Q++VI TS KV++SGV + + +D+YF ++ +K
Sbjct: 96 PQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRK-STAQKT 154
Query: 172 GENEFFESEKE 182
G+N F + E
Sbjct: 155 GKNIFASGKTE 165
>sp|P79071|RL6_SCHPO 60S ribosomal protein L6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rpl6 PE=1 SV=2
Length = 195
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 90/141 (63%), Gaps = 11/141 (7%)
Query: 39 AKNGGVFPRHDPKPKAAAPA-EKPPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLII 97
AKNGG + PA E K+YPA P ++ +PTKLRAS+ PGTV I+
Sbjct: 9 AKNGG--------ERMVLPAGEAAAKYYPAYRENVPKKARKAVRPTKLRASLAPGTVCIL 60
Query: 98 LAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTST-KVDISGVNVDKF 156
LAGRF+GKRVV L QL L+V+GP+K+NGVP+RRVN YVI TS K+D+SGV+V+KF
Sbjct: 61 LAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKF 119
Query: 157 DDKYFAKEVERKKKKGENEFF 177
YFAK+ K + FF
Sbjct: 120 TKAYFAKQKRSGPVKKDEAFF 140
>sp|A8ABY5|RL14E_IGNH4 50S ribosomal protein L14e OS=Ignicoccus hospitalis (strain KIN4/I
/ DSM 18386 / JCM 14125) GN=rpl14e PE=3 SV=1
Length = 103
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G V +I+AGR GK+ V + + +LV+GP ++NGV RR+N ++ KV+
Sbjct: 3 AIEVGRVCVIIAGRRAGKKCVIVDLIDDKFVLVTGPKELNGVKRRRMNIKHLEPLDKKVE 62
Query: 148 ISGVNVDKFDDKYFAKEVERKKKKGENEFFESE 180
I DD AK +E ++ G EF + E
Sbjct: 63 IE----KGADD---AKVLEAIRQAGLEEFMKEE 88
>sp|Q4JAJ9|RL14E_SULAC 50S ribosomal protein L14e OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rpl14e PE=3 SV=1
Length = 96
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + GR GK+ V + + S +LV+GP +INGV RRVN ++ T KV+
Sbjct: 3 AIEIGRICVKTRGREAGKKCVIVDIIDSNFVLVTGPKEINGVKRRRVNILHIEPTDKKVE 62
Query: 148 IS 149
I+
Sbjct: 63 IN 64
>sp|O15595|RL6_ENTHI 60S ribosomal protein L6 (Fragment) OS=Entamoeba histolytica
GN=RPL6 PE=3 SV=1
Length = 92
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 14/65 (21%)
Query: 60 KPPKFYPADDV----KKPLVNKRKPKPT----------KLRASITPGTVLIILAGRFKGK 105
K P +YP DD+ KK L ++ K T KLR SI PG +LII+ G++ GK
Sbjct: 15 KVPAYYPTDDMIQEQKKKLRTRKGAKITALDKPGWNLEKLRKSIVPGAILIIVGGKYAGK 74
Query: 106 RVVFL 110
+VV L
Sbjct: 75 KVVSL 79
>sp|A4YCT0|RL14E_METS5 50S ribosomal protein L14e OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=rpl14e PE=3 SV=1
Length = 96
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 87 ASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKV 146
A I G + + L+GR G + V + + + +LV+GP I+GV RRVN S++ T V
Sbjct: 2 AIIEVGRICVKLSGREAGSKCVIVDIIDNNFVLVTGPKSISGVKRRRVNISHLEPTDKTV 61
Query: 147 DI 148
+I
Sbjct: 62 EI 63
>sp|Q980C1|RL14E_SULSO 50S ribosomal protein L14e OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl14e PE=1 SV=1
Length = 96
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + + GR G + V + + +LV+GP I GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKID 62
Query: 148 ISGVNVDKFDDKYFAKEVERKKKKGENEFFESEKE 182
I + A + E KKK E+ E KE
Sbjct: 63 I----------QKGASDEEVKKKLEESNLTEYMKE 87
>sp|C3N789|RL14E_SULIY 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rpl14e PE=3 SV=1
Length = 96
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + + GR G + V + + +LV+GP I+GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|C3NGE6|RL14E_SULIN 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rpl14e PE=3 SV=1
Length = 96
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + + GR G + V + + +LV+GP I+GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|C3MR21|RL14E_SULIL 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rpl14e PE=3 SV=1
Length = 96
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + + GR G + V + + +LV+GP I+GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|C4KIE7|RL14E_SULIK 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain M.16.4
/ Kamchatka #3) GN=rpl14e PE=3 SV=1
Length = 96
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + + GR G + V + + +LV+GP I+GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|C3MZ69|RL14E_SULIA 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain
M.16.27) GN=rpl14e PE=3 SV=1
Length = 96
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + + GR G + V + + +LV+GP I+GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|C3MXC5|RL14E_SULIM 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=rpl14e PE=3 SV=1
Length = 96
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + + GR G + V + + +LV+GP I+GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|Q975L7|RL14E_SULTO 50S ribosomal protein L14e OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl14e PE=3 SV=1
Length = 96
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + GR GK+ V + + +LV+GP +N V RRVN ++ T K+D
Sbjct: 3 AIEIGRICVKTRGREAGKKCVIVDIIDENFVLVTGPKDVNKVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I+
Sbjct: 63 IN 64
>sp|A1RTL6|RL14E_PYRIL 50S ribosomal protein L14e OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rpl14e PE=3 SV=1
Length = 103
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDI 148
I G V++ + GR G++ V + + ++++GP ++ GV RRVN +++ T K+DI
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKQLTGVRRRRVNINHIEPTDKKIDI 64
>sp|Q8ZYB4|RL14E_PYRAE 50S ribosomal protein L14e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl14e PE=3 SV=1
Length = 103
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDI 148
I G V++ + GR G++ V + + ++++GP I GV RRVN +++ T K+DI
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
>sp|Q8TX43|RL14E_METKA 50S ribosomal protein L14e OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl14e PE=3 SV=1
Length = 94
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 87 ASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKV 146
A I G + + AGR GK V + + ++++GP + GV RR N ++ T KV
Sbjct: 3 APIEVGRICVKTAGREAGKYCVVVDIVDENFVIITGPKDVTGVKRRRCNIKHLEPTPEKV 62
Query: 147 DIS 149
DI
Sbjct: 63 DID 65
>sp|A4WH36|RL14E_PYRAR 50S ribosomal protein L14e OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=rpl14e PE=3 SV=1
Length = 103
Score = 37.4 bits (85), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDI 148
I G V++ + GR G++ V + + +L++GP + GV RRVN +++ T KV+I
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDVVDENYVLITGPKTLTGVKRRRVNINHIEPTDKKVEI 64
>sp|A3DND4|RL14E_STAMF 50S ribosomal protein L14e OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rpl14e PE=3 SV=1
Length = 96
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + +AGR G++ V + + +L++GP + GV RR N ++ +D
Sbjct: 3 AIEIGRICVKVAGREAGRKCVIVDIIDENFVLITGPKSLTGVKRRRANVKHIEPLDKVID 62
Query: 148 IS 149
IS
Sbjct: 63 IS 64
>sp|B1YA63|RL14E_PYRNV 50S ribosomal protein L14e OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=rpl14e PE=3 SV=1
Length = 103
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 36/60 (60%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDI 148
I G V++ + GR G++ V + + ++++GP ++ GV RRVN +++ T KV++
Sbjct: 5 IDVGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKQLTGVRRRRVNVNHIEPTDKKVEV 64
>sp|Q9YDD7|RL14E_AERPE 50S ribosomal protein L14e OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl14e
PE=3 SV=2
Length = 100
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDI 148
+ G + + GR G++ V + + +LV+GP + GV RRVN ++ KVDI
Sbjct: 5 VEVGRICVKTRGREAGRKCVIVDIIDENFVLVTGPKSLTGVRRRRVNIDHIEILDKKVDI 64
Query: 149 S 149
Sbjct: 65 Q 65
>sp|A3MS76|RL14E_PYRCJ 50S ribosomal protein L14e OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=rpl14e PE=3 SV=1
Length = 103
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 36/60 (60%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDI 148
I G V++ + GR G++ V + + ++++GP ++GV RRVN +++ T K++I
Sbjct: 5 IDVGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKSLSGVRRRRVNINHIEPTDKKIEI 64
>sp|Q22306|YW12_CAEEL UPF0046 protein T07D4.2 OS=Caenorhabditis elegans GN=T07D4.2 PE=1
SV=3
Length = 396
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 74 LVNKRKPKPTK---LRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVP 130
L KR KP + L + P V + G G++ K P +LLV+G F G+P
Sbjct: 112 LKEKRPVKPVRQMRLDTPVKPDHVRFVCIGCTHGEQFDISKLPPGDVLLVAGDFTSCGLP 171
Query: 131 LRRVNQSYVIG---TSTKVDISGVNVDKFDDKYFAKEVERKKKK 171
N + ++G S KV I G + FDD + + E + K+
Sbjct: 172 NEVHNFNKLLGKLKYSYKVVIGGNHECTFDDTFLKLKQESEPKE 215
>sp|B8D5U3|RL14E_DESK1 50S ribosomal protein L14e OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=rpl14e PE=3 SV=1
Length = 96
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYV 139
+I G + + AGR G++ + + + +LV+GP + GV R+VN ++
Sbjct: 3 AIEIGRICVKTAGREAGRKCIIVDIIDDNFVLVTGPKSLTGVKRRKVNIKHL 54
>sp|A2BME7|RL14E_HYPBU 50S ribosomal protein L14e OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl14e PE=3 SV=1
Length = 98
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + GR G++ V ++ + +L++GP ++GV RR N +++ K++
Sbjct: 3 AIEVGRLCVKTRGREAGRKCVIVEIIDDNFVLITGPKDVSGVKRRRANINHIEVLPEKIN 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|Q8U2L5|RL14E_PYRFU 50S ribosomal protein L14e OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl14e PE=1 SV=1
Length = 83
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + +++AGR G++VV + + +LV+G +N V RR+N ++ K+D
Sbjct: 3 AIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHIEPLPQKID 61
Query: 148 I 148
I
Sbjct: 62 I 62
>sp|P61354|RL27_RAT 60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2
Length = 136
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
>sp|A1XQU5|RL27_PIG 60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 PE=2 SV=1
Length = 136
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
>sp|P61358|RL27_MOUSE 60S ribosomal protein L27 OS=Mus musculus GN=Rpl27 PE=2 SV=2
Length = 136
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
>sp|Q4R8Z4|RL27_MACFA 60S ribosomal protein L27 OS=Macaca fascicularis GN=RPL27 PE=2 SV=1
Length = 136
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
>sp|P61353|RL27_HUMAN 60S ribosomal protein L27 OS=Homo sapiens GN=RPL27 PE=1 SV=2
Length = 136
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
>sp|P61355|RL27_CHICK 60S ribosomal protein L27 OS=Gallus gallus GN=RPL27 PE=2 SV=2
Length = 136
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
>sp|P61357|RL27_CERNI 60S ribosomal protein L27 OS=Cervus nippon GN=RPL27 PE=2 SV=2
Length = 136
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
>sp|Q9XSU7|RL27_CANFA 60S ribosomal protein L27 OS=Canis familiaris GN=RPL27 PE=2 SV=3
Length = 136
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
>sp|P61356|RL27_BOVIN 60S ribosomal protein L27 OS=Bos taurus GN=RPL27 PE=2 SV=2
Length = 136
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
>sp|P59937|RL14E_PYRHO 50S ribosomal protein L14e OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl14e PE=3 SV=1
Length = 82
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + +I+AGR G++ V + + +LV+G +N V RR+N ++ K+D
Sbjct: 3 AIDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGA-GLNKVKRRRMNIKHLEPLPEKID 61
Query: 148 I 148
I
Sbjct: 62 I 62
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,449,404
Number of Sequences: 539616
Number of extensions: 3428613
Number of successful extensions: 11323
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 11153
Number of HSP's gapped (non-prelim): 213
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)