Query 029973
Match_columns 184
No_of_seqs 157 out of 397
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 10:11:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_G 60S ribosomal protein L 100.0 9.1E-68 3.1E-72 447.9 -6.2 162 15-181 6-167 (219)
2 3izc_G 60S ribosomal protein R 100.0 5.4E-59 1.8E-63 383.7 5.0 125 56-180 1-125 (176)
3 4a18_E RPL6; ribosome, eukaryo 100.0 4.4E-52 1.5E-56 346.2 7.1 120 58-180 12-133 (191)
4 2joy_A 50S ribosomal protein L 99.8 7.3E-20 2.5E-24 137.2 6.2 73 88-164 3-75 (96)
5 4a18_N RPL27, ribosomal protei 99.5 8.3E-15 2.8E-19 117.6 3.1 73 88-162 4-103 (144)
6 3j21_5 50S ribosomal protein L 99.2 1.5E-11 5.3E-16 90.2 4.9 70 88-162 3-72 (83)
7 3izc_N 60S ribosomal protein R 99.0 2.3E-10 7.9E-15 91.2 5.5 61 87-149 13-73 (138)
8 3izc_a 60S ribosomal protein R 99.0 8.1E-13 2.8E-17 105.2 -8.8 63 88-150 4-91 (136)
9 3iz5_a 60S ribosomal protein L 98.9 2.1E-12 7.2E-17 102.8 -9.0 62 88-149 4-90 (136)
10 3iz5_N 60S ribosomal protein L 98.7 1.3E-08 4.3E-13 80.8 4.8 58 88-149 6-63 (134)
11 4a18_F RPL14; ribosome, eukary 98.4 2.5E-07 8.7E-12 72.7 5.1 58 88-149 6-64 (126)
12 2zjr_R 50S ribosomal protein L 95.8 0.0068 2.3E-07 46.5 3.5 67 82-153 11-83 (115)
13 3r8s_U 50S ribosomal protein L 95.0 0.035 1.2E-06 41.8 5.1 63 88-153 3-71 (102)
14 2zkr_t 60S ribosomal protein L 94.7 0.022 7.4E-07 45.6 3.6 64 88-160 48-115 (145)
15 3j21_U 50S ribosomal protein L 94.5 0.034 1.2E-06 43.1 4.1 63 88-159 45-110 (121)
16 1vq8_T 50S ribosomal protein L 94.4 0.035 1.2E-06 43.0 3.9 63 88-159 42-107 (120)
17 3v2d_Y 50S ribosomal protein L 94.3 0.032 1.1E-06 42.6 3.5 63 88-153 6-74 (110)
18 2ftc_N Mitochondrial ribosomal 93.6 0.059 2E-06 40.1 3.7 58 92-153 1-64 (96)
19 3u5e_Y L33, YL33, 60S ribosoma 93.4 0.15 5.1E-06 39.9 5.8 62 89-159 50-114 (127)
20 3iz5_Y 60S ribosomal protein L 92.9 0.099 3.4E-06 42.1 4.3 62 88-158 48-112 (150)
21 4a17_S RPL26, 60S ribosomal pr 91.6 0.24 8.2E-06 39.2 4.9 61 89-158 49-112 (135)
22 3bbo_W Ribosomal protein L24; 88.6 0.043 1.5E-06 45.7 -1.8 63 88-153 68-136 (191)
23 2do3_A Transcription elongatio 82.9 1.9 6.5E-05 30.5 4.6 40 82-121 11-50 (69)
24 3q90_A RAS GTPase-activating p 58.4 3.9 0.00013 31.1 1.6 27 117-143 92-118 (140)
25 3ujm_A Rasputin; NTF2-like fol 53.9 7.8 0.00027 28.6 2.5 27 117-143 79-105 (120)
26 3nv0_B NTF2-related export pro 39.0 19 0.00064 28.1 2.7 26 117-142 113-138 (154)
27 1zo2_A NTF2, nuclear transport 37.1 22 0.00074 26.5 2.7 25 119-143 88-112 (129)
28 1gy6_A Nuclear transport facto 35.4 24 0.00083 26.1 2.7 24 120-143 85-108 (127)
29 2qiy_A UBP3-associated protein 34.4 25 0.00085 26.8 2.7 27 117-143 105-131 (154)
30 1jkg_A P15; NTF2-like domain, 33.8 26 0.0009 26.3 2.7 24 119-142 94-117 (140)
31 1dgw_Y Canavalin; duplicated s 32.5 33 0.0011 24.9 3.0 49 82-142 3-51 (93)
32 1gy7_A Nuclear transport facto 29.6 34 0.0012 25.2 2.7 23 120-142 84-107 (125)
33 2e6z_A Transcription elongatio 24.9 41 0.0014 22.1 2.1 26 87-112 6-31 (59)
34 2ckk_A KIN17; beta barrel, rib 23.8 43 0.0015 25.4 2.3 23 91-113 73-95 (127)
No 1
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=100.00 E-value=9.1e-68 Score=447.87 Aligned_cols=162 Identities=69% Similarity=1.098 Sum_probs=150.5
Q ss_pred ccccCccccchhhhhhccccceeeecCCCcCCCCCCCCcceeecCCCCCCCCCCCCCCccCCCCCCCCcccccccCCCcE
Q 029973 15 ELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKPPKFYPADDVKKPLVNKRKPKPTKLRASITPGTV 94 (184)
Q Consensus 15 ~l~~Gi~r~Srs~~y~rk~~~k~k~k~gg~~pkng~kg~r~v~l~k~p~yYptedv~~~~~~~~~~~~~klR~sitpGtv 94 (184)
+|++||+|||||+||+++|+|+.|.++||.+|+.. .....++|+||||||+|+++.+++++|+++||+||+||||
T Consensus 6 ~l~~Gi~r~s~s~my~k~~~~~~k~k~gg~~~~~~-----k~~~~~~p~~YPtedv~~~~~~~k~~~~~klR~si~pGtV 80 (219)
T 3iz5_G 6 KMALGIKRASRSHTYHRRGLWAIKAKHGGALPKAE-----KPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRSTITPGTV 80 (219)
T ss_dssp HHHTTTSHHHHHHHHHHHHHCSCTHHHHHHCCCCC-----CCCSSCCCCCCSSTTHHHHHHHHHTTHHHHHHHHCSCCSC
T ss_pred hhhcchhhhhHHHHHHHHHHHHHhcccCCcccccc-----ccccccccCcCCccccccccccccCcCcccccccccCCCE
Confidence 79999999999999999999998877788776543 1245679999999999998777778999999999999999
Q ss_pred EEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeEEecCCcccCccChHhhhhhhhhhhccccc
Q 029973 95 LIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGEN 174 (184)
Q Consensus 95 lIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki~~l~D~YFkk~k~~k~~~~e~ 174 (184)
||||+|+|+||||||||||+||||||||||.||||||||+||+|||||||+||||||+|++|||+||++++.++++|+|+
T Consensus 81 lIil~Gr~~GKrvVfLkqL~sgllLVtGP~~lNgVplrR~~qk~viaTstkIdIs~Vki~~l~D~YF~k~k~~k~k~~E~ 160 (219)
T 3iz5_G 81 LILLAGRYMGKRVVFLKQLQSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISKVNVQKFDDKYFAREKKTRAKKTEG 160 (219)
T ss_dssp EECSSSSSSCCEECEEEESSSSSEEECCCCSSSCCCCEEESSSSCEECSCCCSCSSCCCSSCCCSSHHHHHHHHHHHHHH
T ss_pred EEEeccccCCcEEEEEEecCCCeEEEcCCccccCCccEEechhhEEecceEeecCccccccccHHHHhhhhhcccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999889999999998889999999
Q ss_pred ccccccc
Q 029973 175 EFFESEK 181 (184)
Q Consensus 175 eiF~~~k 181 (184)
|||++++
T Consensus 161 eiF~~~k 167 (219)
T 3iz5_G 161 ELFESDK 167 (219)
T ss_dssp HHHHHHH
T ss_pred hhhcccc
Confidence 9999875
No 2
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=100.00 E-value=5.4e-59 Score=383.74 Aligned_cols=125 Identities=58% Similarity=0.969 Sum_probs=120.2
Q ss_pred eecCCCCCCCCCCCCCCccCCCCCCCCcccccccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeee
Q 029973 56 APAEKPPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVN 135 (184)
Q Consensus 56 v~l~k~p~yYptedv~~~~~~~~~~~~~klR~sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~ 135 (184)
|+++|||+||||||+|+++.+++++|+++||+||+||||||+|+|+|+||||||||||+||||||||||.||||||||+|
T Consensus 1 ~~~~k~p~~YPtedv~~~~~~~k~~~~~klR~Si~pGtvlIil~Gr~~GkrvVfLKql~sglllVTGP~~lNgvplrR~~ 80 (176)
T 3izc_G 1 MSAQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVN 80 (176)
T ss_dssp CCSSCCCCCCCCCCCCCCCTTTSTTSSCSHHHHCCCCSCEECCSSSSSCCCBEEEEESSSSSEEEECCCSSSCCCCEEES
T ss_pred CCcccccCcCCccccccccccccccccccccccCCCCCEEEEeccccCCCEEEEEEecCCCeEEEecCceecCCcceeee
Confidence 45789999999999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeeeeEEecCCcccCccChHhhhhhhhhhhccccccccccc
Q 029973 136 QSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESE 180 (184)
Q Consensus 136 q~~VIaTstkidis~vki~~l~D~YFkk~k~~k~~~~e~eiF~~~ 180 (184)
|+|||||||+||||||+|++|||+||+++++++++|+|+|||+++
T Consensus 81 q~~vIaTstkidis~vki~~l~D~YF~k~k~~k~k~~E~eiF~~~ 125 (176)
T 3izc_G 81 ARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQ 125 (176)
T ss_dssp SSSCEECSCCCSSSSCCCSSCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEeeeeeeecccccccccCHHHhhhhhccccccchhhhcccc
Confidence 999999999999999999889999999988889999999999765
No 3
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=100.00 E-value=4.4e-52 Score=346.20 Aligned_cols=120 Identities=59% Similarity=1.012 Sum_probs=114.1
Q ss_pred cCCCCCCCCCCCCCCccCCC--CCCCCcccccccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeee
Q 029973 58 AEKPPKFYPADDVKKPLVNK--RKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVN 135 (184)
Q Consensus 58 l~k~p~yYptedv~~~~~~~--~~~~~~klR~sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~ 135 (184)
.+|||+||||||+|+++.++ +++|+++||+||+||||||||+|||+||||||||||+|||||||||++||+|||+|+|
T Consensus 12 ~~k~p~~YPtedv~~~~~~~~~~~~~~~klr~si~pGtVlIiL~Gr~~GKrvV~LKql~sgllLVtGP~~vn~vplrrvn 91 (191)
T 4a18_E 12 VSKISKWYKADDEATPFHRRQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLKSGLLLVTGPYKVNGVPLKRVN 91 (191)
T ss_dssp TTSHHHHCCCCCSCCCCCCTTTTTCCCCCCCTTCCTTEEEEECSSTTTTBEEEEEEECTTSCEEEECCTTTSSCCSEEEC
T ss_pred cccccccCCcccccccccccccccccchhhhccccCCCEEEEeccccCCCEEEEEEecCCCeEEEecCccccCCceEEEe
Confidence 46999999999999987776 6899999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeeeeEEecCCcccCccChHhhhhhhhhhhccccccccccc
Q 029973 136 QSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESE 180 (184)
Q Consensus 136 q~~VIaTstkidis~vki~~l~D~YFkk~k~~k~~~~e~eiF~~~ 180 (184)
|+|||||||+||||||++++|||+||++++ ++++|+|||+++
T Consensus 92 ~~~vi~TstkvDis~vki~~~~d~YF~k~k---~k~~e~eiF~~~ 133 (191)
T 4a18_E 92 QAYTLSTSTKVDLTGVNTAKFEDDYFGREK---ARKNHKNLFKAE 133 (191)
T ss_dssp GGGEEEEEEECCCTTCCGGGCCGGGSCCCC---CCCCTTTTSCCC
T ss_pred eeeEEeeeeEeecccccccccCHHHhcccc---cccchhhhhccc
Confidence 999999999999999999999999999764 489999999887
No 4
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=99.79 E-value=7.3e-20 Score=137.17 Aligned_cols=73 Identities=32% Similarity=0.479 Sum_probs=67.9
Q ss_pred ccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeEEecCCcccCccChHhhhhh
Q 029973 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKE 164 (184)
Q Consensus 88 sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki~~l~D~YFkk~ 164 (184)
+++||+|+|+++|+|+|+++|||+++++|++||+||...|++|++++|++|+++|++++|++ ..++|+||++.
T Consensus 3 ~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~~vLV~gp~~~~~~~rk~~n~khl~~T~~~vdi~----~~~~~~~vrka 75 (96)
T 2joy_A 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQ----KGASDEEVKKK 75 (96)
T ss_dssp SSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECCCC----SSCCHHHHHHH
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEeCCCEEEEECCcccCCcCCEEEchHHEEEeeEEEeCC----CCCChHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999842 24899999864
No 5
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=99.49 E-value=8.3e-15 Score=117.60 Aligned_cols=73 Identities=29% Similarity=0.437 Sum_probs=63.1
Q ss_pred ccCCCcEEEEeeceecCceEEEeeecCC-------ceEEEec----cceecC-------cceee-------eecceEEee
Q 029973 88 SITPGTVLIILAGRFKGKRVVFLKQLPS-------GLLLVSG----PFKING-------VPLRR-------VNQSYVIGT 142 (184)
Q Consensus 88 sitpGtvlIiL~Gr~~GKRvVfLKqL~s-------glllVtG----P~~lN~-------vPlrR-------v~q~~VIaT 142 (184)
-++||+|+|+|+|+|+|++||+||++++ |.+||+| |.++++ ++..+ +|.+|+++|
T Consensus 4 f~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl~pT 83 (144)
T 4a18_N 4 FLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIMPT 83 (144)
T ss_dssp CCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGEEEE
T ss_pred cccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeEEEe
Confidence 4789999999999999999999999999 8999999 999999 88888 999999999
Q ss_pred eeEE--ecCCcccCccChHhhh
Q 029973 143 STKV--DISGVNVDKFDDKYFA 162 (184)
Q Consensus 143 stki--dis~vki~~l~D~YFk 162 (184)
++.| ||+ ++ .-++++-|+
T Consensus 84 ry~v~~di~-lK-~~v~~d~~~ 103 (144)
T 4a18_N 84 RYSVKELCD-FK-ELVKEDKIK 103 (144)
T ss_dssp EEECSTTCC-HH-HHSCHHHHH
T ss_pred eEEeeccCc-hh-hccCHHHhh
Confidence 9999 875 22 115555553
No 6
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.19 E-value=1.5e-11 Score=90.19 Aligned_cols=70 Identities=29% Similarity=0.472 Sum_probs=61.3
Q ss_pred ccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeEEecCCcccCccChHhhh
Q 029973 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFA 162 (184)
Q Consensus 88 sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki~~l~D~YFk 162 (184)
.+.+|.++++++|+++|+.+|+++.++++.+||+|| .+++||.++.|.+|+..|+.+|+++. ..+|++-+
T Consensus 3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~vlV~g~-~~~~v~rk~kn~khl~lt~~~i~~~~----~~~~~~vr 72 (83)
T 3j21_5 3 AIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHIEPLPQKIDIPR----GASDEEVR 72 (83)
T ss_dssp CCCTTEEEECSSSSSSCCCEEEEEECSSSCEEEECC-TTTTCCCEEESCSSCEEEEEECCCCS----SCCTTTSH
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEcCCCEEEEECC-ccCccCCeEechHHEEEeeEEEECCC----CCChHHHH
Confidence 478999999999999999999999999999999999 67999999999999999999987532 25555554
No 7
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=99.03 E-value=2.3e-10 Score=91.24 Aligned_cols=61 Identities=25% Similarity=0.420 Sum_probs=57.6
Q ss_pred cccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeEEecC
Q 029973 87 ASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDIS 149 (184)
Q Consensus 87 ~sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis 149 (184)
.-+.||.|++++.|+++|+.+|+++.++++.+||.|| ..|||.+++|-+|+..|...|||+
T Consensus 13 rfve~GrVV~i~~Gr~aGk~avIV~iiD~~rVLVDGp--~~gV~R~~~n~khL~lT~~~v~i~ 73 (138)
T 3izc_N 13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGP--KAGVPRQAINLGQVVLTPLTFALP 73 (138)
T ss_dssp CCSSTTEEEECCSCSSSCCEEEEEEECSSSEEEEECS--SSSCCCEEEECSSSEEEEEECCCC
T ss_pred hhcccCeEEEEeeCCCCCCEEEEEEEecCCEEEEEcC--CCCcccceechhHeEEecEEEEcc
Confidence 4578999999999999999999999999999999999 489999999999999999999875
No 8
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=99.02 E-value=8.1e-13 Score=105.24 Aligned_cols=63 Identities=29% Similarity=0.566 Sum_probs=51.9
Q ss_pred ccCCCcEEEEeeceecCceEEEeeecCCc-------eEEEec----cceecC-------cceeee-------ecceEEee
Q 029973 88 SITPGTVLIILAGRFKGKRVVFLKQLPSG-------LLLVSG----PFKING-------VPLRRV-------NQSYVIGT 142 (184)
Q Consensus 88 sitpGtvlIiL~Gr~~GKRvVfLKqL~sg-------lllVtG----P~~lN~-------vPlrRv-------~q~~VIaT 142 (184)
-++||+|+|+|+|||+|++||+||++++| .+||+| |.++.. .-..++ |-+|+++|
T Consensus 4 f~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdryP~kvt~~Mgkkki~KrskiK~FvKv~NynHlmPT 83 (136)
T 3izc_a 4 FLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPT 83 (136)
T ss_dssp -CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSSSCCCCCCSSSCCCCCCTTHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccCChhhhhccCHHHHHhhhhceeeeEEEeccceeee
Confidence 37899999999999999999999999998 999999 444443 112244 89999999
Q ss_pred eeEEecCC
Q 029973 143 STKVDISG 150 (184)
Q Consensus 143 stkidis~ 150 (184)
.+.+||+.
T Consensus 84 Ry~vdi~~ 91 (136)
T 3izc_a 84 RYTLDVEA 91 (136)
T ss_dssp HHHHHHHH
T ss_pred eeeEcccc
Confidence 99999863
No 9
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=98.95 E-value=2.1e-12 Score=102.84 Aligned_cols=62 Identities=32% Similarity=0.593 Sum_probs=51.8
Q ss_pred ccCCCcEEEEeeceecCceEEEeeecCCc-------eEEEec----cceecC-------cceeee-------ecceEEee
Q 029973 88 SITPGTVLIILAGRFKGKRVVFLKQLPSG-------LLLVSG----PFKING-------VPLRRV-------NQSYVIGT 142 (184)
Q Consensus 88 sitpGtvlIiL~Gr~~GKRvVfLKqL~sg-------lllVtG----P~~lN~-------vPlrRv-------~q~~VIaT 142 (184)
-++||+|+|+|+|||+|++||+||++++| .+||+| |.++.. .-..++ |-+|+++|
T Consensus 4 ~~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdryP~kvt~~M~kkki~KrskiK~FvKv~NynHlmPT 83 (136)
T 3iz5_a 4 FLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHLMPT 83 (136)
T ss_dssp SCCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTTTTCCCCCCSSSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccCChhhccCCCHHHhhhhhhceeeeEEEeecceecc
Confidence 47899999999999999999999999998 999999 544443 112244 99999999
Q ss_pred eeEEecC
Q 029973 143 STKVDIS 149 (184)
Q Consensus 143 stkidis 149 (184)
.+.+||+
T Consensus 84 RY~vdi~ 90 (136)
T 3iz5_a 84 RYTLDVD 90 (136)
T ss_dssp HHHHHHH
T ss_pred ceEeecc
Confidence 9999985
No 10
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=98.69 E-value=1.3e-08 Score=80.82 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=55.1
Q ss_pred ccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeEEecC
Q 029973 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDIS 149 (184)
Q Consensus 88 sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis 149 (184)
=+.||.|++++.|+++|+.+|+++.+|++.+||.||. ||.+.+|-+|+..|...|||+
T Consensus 6 fvevGRVV~i~~Gr~aGk~avIV~iiD~~rvLVdG~~----v~Rk~~n~khL~lT~~~v~i~ 63 (134)
T 3iz5_N 6 FVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD----MVRCQINFKRLSLTDIKIDIK 63 (134)
T ss_dssp SCCSSEEEECSCCSSSCCEEEEEEECSSSEEEEEETT----EEEEEEECTTSEEEEEECCCC
T ss_pred ccccCeEEEEeeCCCCCCEEEEEEEcCCCeEEEeCCC----ccceeechhHeEEeCEEEecc
Confidence 4689999999999999999999999999999999997 899999999999999999875
No 11
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=98.41 E-value=2.5e-07 Score=72.74 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=54.5
Q ss_pred ccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeEEe-cC
Q 029973 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD-IS 149 (184)
Q Consensus 88 sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~~VIaTstkid-is 149 (184)
-+.+|.|++++.|+++||.+|++..+|.+.+||.||- ||.+.+|-+++..|..+|| |.
T Consensus 6 fvevGRVv~i~~G~~aGklavIVdIID~nrvLVdGp~----V~Rq~~n~k~l~LT~~~v~~i~ 64 (126)
T 4a18_F 6 FVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGEH----IVRQVIPIRRVHLTKFQIDNVE 64 (126)
T ss_dssp EEETTEEEEECSSTTTTEEEEEEEEETTTEEEEEETT----EEEEEEEGGGEEEEEEECTTCC
T ss_pred ceecceEEEEccCCccCCEEEEEEEecCCeEEEeCCC----cccceeeccceEEcceeccccC
Confidence 4679999999999999999999999999999999996 9999999999999999997 63
No 12
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=95.77 E-value=0.0068 Score=46.54 Aligned_cols=67 Identities=25% Similarity=0.327 Sum_probs=50.9
Q ss_pred CcccccccCCCcEEEEeeceecCceEEEeeec-CCceEEEeccceecCc-----ceeeeecceEEeeeeEEecCCccc
Q 029973 82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGV-----PLRRVNQSYVIGTSTKVDISGVNV 153 (184)
Q Consensus 82 ~~klR~sitpGtvlIiL~Gr~~GKRvVfLKqL-~sglllVtGP~~lN~v-----PlrRv~q~~VIaTstkidis~vki 153 (184)
.+++ .|..|+.+++++|.++|++-.+|+-+ ..+-++|.| +|-+ |-..-.|-=++....-|++|||.+
T Consensus 11 ~rkm--~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEG---vN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~l 83 (115)
T 2zjr_R 11 NDKL--HFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEG---VNVITKNVKPSMTNPQGGQEQRELALHASKVAL 83 (115)
T ss_dssp TSCC--SSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESS---SCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEEC
T ss_pred ceeC--cccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC---cEeEEEecCCCcCCCCCCEEEEEcccCHHHEEE
Confidence 3455 58899999999999999999999987 478999999 7765 221122334455566789999987
No 13
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=94.99 E-value=0.035 Score=41.82 Aligned_cols=63 Identities=29% Similarity=0.414 Sum_probs=49.2
Q ss_pred ccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceee------eecceEEeeeeEEecCCccc
Q 029973 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRR------VNQSYVIGTSTKVDISGVNV 153 (184)
Q Consensus 88 sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrR------v~q~~VIaTstkidis~vki 153 (184)
-|..|+-+++++|.++||.-..|+-+..+-++|.| +|-+--.- -.|-=+|....-|++|||.+
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ViVeG---vN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~l 71 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEG---INLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAI 71 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETTTEEEETT---CSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEE
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeCCEEEEeC---eEEEEeccccCcccCCCCCEEEEECCcCHHHEEE
Confidence 37789999999999999999999988669999999 66432221 23344666667899999977
No 14
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=94.75 E-value=0.022 Score=45.55 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=48.2
Q ss_pred ccCCCcEEEEeeceecCce-EEEeeec-CCceEEEeccceecCcceeeeecceEEeeeeEEecCCccc--CccChHh
Q 029973 88 SITPGTVLIILAGRFKGKR-VVFLKQL-PSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDDKY 160 (184)
Q Consensus 88 sitpGtvlIiL~Gr~~GKR-vVfLKqL-~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki--~~l~D~Y 160 (184)
.|..|+.|+|++|.++|+. -.+++-+ ..+-++|.| ||- .+.+- +....-|++|||.| ++++++-
T Consensus 48 ~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEg---vn~---~Kp~G---~~~e~PIh~SNV~lv~~~~~k~~ 115 (145)
T 2zkr_t 48 PIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIER---VQR---EKANG---TTVHVGIHPSKVVITRLKLDKDR 115 (145)
T ss_dssp BCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETT---CEE---ECSSC---CEEECCBCGGGEEECC-CCCHHH
T ss_pred ccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEee---eEe---EcCCC---ceEEeccCHHHEEEEcCcCCchH
Confidence 4889999999999999999 8888876 478899998 663 33332 34445689999988 3566654
No 15
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.51 E-value=0.034 Score=43.11 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=48.6
Q ss_pred ccCCCcEEEEeeceecCceEEEeeecC-CceEEEeccceecCcceeeeecceEEeeeeEEecCCccc--CccChH
Q 029973 88 SITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDDK 159 (184)
Q Consensus 88 sitpGtvlIiL~Gr~~GKRvVfLKqL~-sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki--~~l~D~ 159 (184)
.|..|+.|++++|.++|+.-.+++-+. .+-++|.| +|-+- .|. +....-|++|||.| +.++|.
T Consensus 45 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEg---vn~~k---~~G---~~~e~pIh~SNV~l~~~~~~d~ 110 (121)
T 3j21_U 45 PVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEG---ATLRK---TNG---TEVFYPIHPSNVMIIELNLEDE 110 (121)
T ss_dssp ECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETT---CEEEC---SSS---CEEECCBCGGGEEEEECCCCCH
T ss_pred ccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeC---eEEEe---cCC---cEEEcccCHHHeEEEcCccCCc
Confidence 477899999999999999999999874 78999999 66432 233 34456799999988 456554
No 16
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=94.40 E-value=0.035 Score=43.03 Aligned_cols=63 Identities=17% Similarity=0.327 Sum_probs=48.0
Q ss_pred ccCCCcEEEEeeceecCceEEEeeec-CCceEEEeccceecCcceeeeecceEEeeeeEEecCCccc--CccChH
Q 029973 88 SITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDDK 159 (184)
Q Consensus 88 sitpGtvlIiL~Gr~~GKRvVfLKqL-~sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki--~~l~D~ 159 (184)
.|..|+.|++++|.+.|+.--+++-+ ..+-++|.| +|- .+.+-. ..-.-|++|||.| ++++++
T Consensus 42 ~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEg---vn~---kK~~Gg---~~e~pIh~SNV~i~~~~~~k~ 107 (120)
T 1vq8_T 42 RVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVED---VTL---EKTDGE---EVPRPLDTSNVRVTDLDLEDE 107 (120)
T ss_dssp ECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT---CEE---ECSSSC---EEECCBCGGGEEEEECCCCCH
T ss_pred cccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeC---eEe---EcCCCC---EEEeeechHHEEEEeccCCCc
Confidence 48899999999999999999999987 478899998 653 333333 3344689999988 456554
No 17
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=94.33 E-value=0.032 Score=42.57 Aligned_cols=63 Identities=22% Similarity=0.349 Sum_probs=49.3
Q ss_pred ccCCCcEEEEeeceecCceEEEeeecC-CceEEEeccceecCccee-----eeecceEEeeeeEEecCCccc
Q 029973 88 SITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLR-----RVNQSYVIGTSTKVDISGVNV 153 (184)
Q Consensus 88 sitpGtvlIiL~Gr~~GKRvVfLKqL~-sglllVtGP~~lN~vPlr-----Rv~q~~VIaTstkidis~vki 153 (184)
.|..|+-+++++|.++||.-..|+-+. .+-++|.| +|-+--+ .-.+-=++....-|++|||.+
T Consensus 6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEG---vN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~l 74 (110)
T 3v2d_Y 6 HVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEG---VNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRP 74 (110)
T ss_dssp SCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETT---SSEEEEECCSSSSSTTCCEEEEECCEEGGGEEE
T ss_pred ccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeC---EEEEEEEeCCCccCCCCCEEEEECCcCHHHeEE
Confidence 477899999999999999999999875 68999999 6653211 112445677777999999987
No 18
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=93.62 E-value=0.059 Score=40.15 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=44.8
Q ss_pred CcEEEEeeceecCceEEEeeec-CCceEEEeccceecCc-----ceeeeecceEEeeeeEEecCCccc
Q 029973 92 GTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGV-----PLRRVNQSYVIGTSTKVDISGVNV 153 (184)
Q Consensus 92 GtvlIiL~Gr~~GKRvVfLKqL-~sglllVtGP~~lN~v-----PlrRv~q~~VIaTstkidis~vki 153 (184)
|+-+++++|.++||.--.|+-+ ..+-++|.| +|-+ |-. -.|-=++....-|++|||.+
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeG---vN~~kkh~kp~~-~~~Ggiv~~e~pIh~SNV~l 64 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGG---LNTHYRYIGKTM-DYRGTMIPSEAPLLHRQVKL 64 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC---CEEEEEEcCCCC-CCCCCEEEEecCcCHHHEEE
Confidence 6789999999999999999987 478999999 7754 221 22345666667889999977
No 19
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=93.39 E-value=0.15 Score=39.94 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=47.7
Q ss_pred cCCCcEEEEeeceecCceEEEeeecC-CceEEEeccceecCcceeeeecceEEeeeeEEecCCccc--CccChH
Q 029973 89 ITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDDK 159 (184)
Q Consensus 89 itpGtvlIiL~Gr~~GKRvVfLKqL~-sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki--~~l~D~ 159 (184)
|.-|+.|++++|.+.|+.--+|+-+. .+-++|.| +|-+ ..|..-+ -.-|++|||.| +++++.
T Consensus 50 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEg---Vn~~---K~~G~~~---e~pIh~SNV~i~~~~~dk~ 114 (127)
T 3u5e_Y 50 IRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDK---VTKE---KVNGASV---PINLHPSKLVITKLHLDKD 114 (127)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEET---CEEE---CSSSCEE---ECCBCGGGEEEEECCCCHH
T ss_pred ccCCCEEEEeecCCCCccceEEEEECCCCEEEEeC---eEEE---CCCCcEE---EcccchHHEEEEccccCcH
Confidence 66899999999999999999999876 58999999 5543 3344322 34699999998 457654
No 20
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=92.94 E-value=0.099 Score=42.05 Aligned_cols=62 Identities=23% Similarity=0.281 Sum_probs=47.6
Q ss_pred ccCCCcEEEEeeceecCceEEEeeecC-CceEEEeccceecCcceeeeecceEEeeeeEEecCCccc--CccCh
Q 029973 88 SITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDD 158 (184)
Q Consensus 88 sitpGtvlIiL~Gr~~GKRvVfLKqL~-sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki--~~l~D 158 (184)
-|..|+-|++++|.+.|+.--+|+-+. .+-++|.| ||-+ ..|.. ..-.-|++|||.| +++++
T Consensus 48 ~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VEG---VN~~---K~~G~---~~eapIh~SNV~i~~~k~dk 112 (150)
T 3iz5_Y 48 PIRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVER---ITRE---KVNGS---TVNVGIHPSKVVVTKLKLDK 112 (150)
T ss_dssp ECCSSSEEEECSSTTTTCEEEEEEEETTTTEEEETT---CEEE---CTTSC---EEECCBCGGGEEEEECCCCS
T ss_pred ccCCCCEEEEeecCCCCccceEEEEEcCCCEEEEeC---cEEE---eCCCC---EEecccchHHEEEEcccCCh
Confidence 367899999999999999999999876 58899888 5543 33443 2345799999988 45654
No 21
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=91.56 E-value=0.24 Score=39.17 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=47.0
Q ss_pred cCCCcEEEEeeceecCceEEEeeecC-CceEEEeccceecCcceeeeecceEEeeeeEEecCCccc--CccCh
Q 029973 89 ITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDD 158 (184)
Q Consensus 89 itpGtvlIiL~Gr~~GKRvVfLKqL~-sglllVtGP~~lN~vPlrRv~q~~VIaTstkidis~vki--~~l~D 158 (184)
|.-|+.|++++|.+.|+.--+|+-+. .+-++|.| ||-+ ..|.. ..-.-|++|||.| +++++
T Consensus 49 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEg---Vn~~---K~~G~---~~e~pIh~SNV~i~~~k~dk 112 (135)
T 4a17_S 49 VRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEK---ISKN---KLNGA---PYQIPLSASQLVLTKLKLDK 112 (135)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT---CCEE---ETTTE---EECCCBCGGGEEEEECCCCH
T ss_pred ccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeC---eEEE---cCCCC---EEEcccchHHEEEEcccCCc
Confidence 67899999999999999999999875 58899988 5543 33442 2344789999998 45654
No 22
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=88.57 E-value=0.043 Score=45.73 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=47.4
Q ss_pred ccCCCcEEEEeeceecCceEEEeeec-CCceEEEeccceecCccee-----eeecceEEeeeeEEecCCccc
Q 029973 88 SITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGVPLR-----RVNQSYVIGTSTKVDISGVNV 153 (184)
Q Consensus 88 sitpGtvlIiL~Gr~~GKRvVfLKqL-~sglllVtGP~~lN~vPlr-----Rv~q~~VIaTstkidis~vki 153 (184)
.|..|+-|++++|.++||.-.+|+-+ ..+-++|.| +|-+--+ .-.|-=+|....-|++|||.+
T Consensus 68 kIkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVEG---VN~vkKH~Kp~~~~~~GgIv~kEaPIhiSNV~L 136 (191)
T 3bbo_W 68 HVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKD---LNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVML 136 (191)
T ss_dssp CSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSS---CCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEE
T ss_pred eeecCCEEEEeecCCCCceEEEEEEECCCCEEEEeC---CEEEEEecCCcccCCCCCEEEEecCcCHHHeEE
Confidence 48899999999999999999999887 468899999 7765321 111334554556788999877
No 23
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=82.87 E-value=1.9 Score=30.46 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=33.4
Q ss_pred CcccccccCCCcEEEEeeceecCceEEEeeecCCceEEEe
Q 029973 82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVS 121 (184)
Q Consensus 82 ~~klR~sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVt 121 (184)
...||+-+.+|+-+-++.|+|+|.--.+++.-++-..+++
T Consensus 11 ~~~LrK~F~~GDHVkVi~G~~~getGlVV~v~~d~v~v~S 50 (69)
T 2do3_A 11 AQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFS 50 (69)
T ss_dssp CCCCCSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEE
T ss_pred HHHceeeccCCCeEEEeccEEcCceEEEEEEeCCEEEEEe
Confidence 5678999999999999999999998888888766555543
No 24
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=58.44 E-value=3.9 Score=31.09 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=21.8
Q ss_pred eEEEeccceecCcceeeeecceEEeee
Q 029973 117 LLLVSGPFKINGVPLRRVNQSYVIGTS 143 (184)
Q Consensus 117 lllVtGP~~lN~vPlrRv~q~~VIaTs 143 (184)
|++|+|=+..++-|.++.+|.|+++-.
T Consensus 92 lI~V~G~l~~~~~~~~~F~QtF~L~p~ 118 (140)
T 3q90_A 92 VVQVMGLLSNNNQALRRFMQTFVLAPE 118 (140)
T ss_dssp EEEEEEEEECTTCCCEEEEEEEEEEEC
T ss_pred EEEEEEEEecCCCCccEEEEEEEEeec
Confidence 556777777777789999999999864
No 25
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=53.88 E-value=7.8 Score=28.57 Aligned_cols=27 Identities=30% Similarity=0.701 Sum_probs=22.5
Q ss_pred eEEEeccceecCcceeeeecceEEeee
Q 029973 117 LLLVSGPFKINGVPLRRVNQSYVIGTS 143 (184)
Q Consensus 117 lllVtGP~~lN~vPlrRv~q~~VIaTs 143 (184)
|+.|+|=+..++-|.++.+|.|+++-.
T Consensus 79 li~V~G~l~~~~~~~r~F~QtF~L~p~ 105 (120)
T 3ujm_A 79 VVQVTGELSNDGQPMRRFTQTFVLAAQ 105 (120)
T ss_dssp EEEEEEEEESTTCCCEEEEEEEEEEEC
T ss_pred EEEEEEEEEeCCCCCceEEEEEEEEEc
Confidence 567778888888899999999999853
No 26
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=38.96 E-value=19 Score=28.06 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=20.5
Q ss_pred eEEEeccceecCcceeeeecceEEee
Q 029973 117 LLLVSGPFKINGVPLRRVNQSYVIGT 142 (184)
Q Consensus 117 lllVtGP~~lN~vPlrRv~q~~VIaT 142 (184)
++.|+|=+.+++-|.++.+|-||++-
T Consensus 113 lI~V~G~l~~~~~~~r~F~QtFvL~p 138 (154)
T 3nv0_B 113 LLNVAGAVTVDGDSKRAFTQTLLLGV 138 (154)
T ss_dssp EEEEEEEEEETTSCCEEEEEEEEEEE
T ss_pred EEEEEEEEEECCCCceeEEEEEEEEE
Confidence 45666777777778899999999874
No 27
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=37.14 E-value=22 Score=26.48 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=17.2
Q ss_pred EEeccceecCcceeeeecceEEeee
Q 029973 119 LVSGPFKINGVPLRRVNQSYVIGTS 143 (184)
Q Consensus 119 lVtGP~~lN~vPlrRv~q~~VIaTs 143 (184)
.|+|=+..++-|.++.+|-|+++-.
T Consensus 88 ~V~G~~~~~~~~~~~F~qtF~L~p~ 112 (129)
T 1zo2_A 88 FVTGDVRIDDGQPLKFSQVFNLMPS 112 (129)
T ss_dssp EEEEEEEETTCCCEEEEEEEEEEEC
T ss_pred EEEEEEEECCCCcceEEEEEEEEEc
Confidence 3444444445588999999999864
No 28
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=35.37 E-value=24 Score=26.08 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=16.1
Q ss_pred EeccceecCcceeeeecceEEeee
Q 029973 120 VSGPFKINGVPLRRVNQSYVIGTS 143 (184)
Q Consensus 120 VtGP~~lN~vPlrRv~q~~VIaTs 143 (184)
|+|=+..++-|.++.+|-|+++-.
T Consensus 85 V~G~~~~~~~~~~~F~qtF~L~p~ 108 (127)
T 1gy6_A 85 VVGQLKADEDPIMGFHQMFLLKNI 108 (127)
T ss_dssp EEEEEEETTSCCEEEEEEEEEEEE
T ss_pred EEEEEEECCCCcceEeEEEEEEEe
Confidence 334333344588999999999853
No 29
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=34.43 E-value=25 Score=26.82 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEeccceecCcceeeeecceEEeee
Q 029973 117 LLLVSGPFKINGVPLRRVNQSYVIGTS 143 (184)
Q Consensus 117 lllVtGP~~lN~vPlrRv~q~~VIaTs 143 (184)
++.|+|=+..++-|.|+.+|-|+++-.
T Consensus 105 lI~V~G~~~~~~~~~r~F~qtFvL~p~ 131 (154)
T 2qiy_A 105 LIMATGEMFWTGTPVYKFCQTFILLPS 131 (154)
T ss_dssp EEEEEEEEEETTCCCEEEEEEEEEEEC
T ss_pred EEEEEEEEEECCCCCceEEEEEEEEEe
Confidence 455666666666789999999999864
No 30
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=33.80 E-value=26 Score=26.26 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=16.9
Q ss_pred EEeccceecCcceeeeecceEEee
Q 029973 119 LVSGPFKINGVPLRRVNQSYVIGT 142 (184)
Q Consensus 119 lVtGP~~lN~vPlrRv~q~~VIaT 142 (184)
.|+|=+.+++-|.++.+|-|+++-
T Consensus 94 ~V~G~~~~~~~~~r~F~qtF~L~p 117 (140)
T 1jkg_A 94 VICGSVKFEGNKQRDFNQNFILTA 117 (140)
T ss_dssp EEEEEEEETTSCCEEEEEEEEEEE
T ss_pred EEEEEEEECCCCceeeeEEEEEEe
Confidence 344444455558899999999985
No 31
>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y
Probab=32.54 E-value=33 Score=24.90 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=33.3
Q ss_pred CcccccccCCCcEEEEeeceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEee
Q 029973 82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGT 142 (184)
Q Consensus 82 ~~klR~sitpGtvlIiL~Gr~~GKRvVfLKqL~sglllVtGP~~lN~vPlrRv~q~~VIaT 142 (184)
.++++..+.+|+|+||-+|. +|..+.- ++|-+| | |.+|. +-++.+.+|=
T Consensus 3 ~~~~~~~l~~G~v~vVPq~~-----~v~~~A~-~~le~v-~-F~tna----~~~~~~~LAG 51 (93)
T 1dgw_Y 3 LRRYAATLSEGDIIVIPSSF-----PVALKAA-SDLNMV-G-IGVNA----ENNERNFLAG 51 (93)
T ss_dssp EEEEEEEECTTCEEEECTTC-----CEEEEES-SSEEEE-E-EEESC----TTCCEEESSS
T ss_pred cchhhceecCCcEEEECCCC-----ceeEEec-CCeEEE-E-EEecC----CCCeeeeccC
Confidence 46778899999999999996 4444443 565444 4 55665 3466666664
No 32
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=29.65 E-value=34 Score=25.16 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=15.1
Q ss_pred EeccceecCc-ceeeeecceEEee
Q 029973 120 VSGPFKINGV-PLRRVNQSYVIGT 142 (184)
Q Consensus 120 VtGP~~lN~v-PlrRv~q~~VIaT 142 (184)
|+|=+..++- |.++.+|-|+++-
T Consensus 84 V~G~~~~~~~~~~~~F~qtF~L~p 107 (125)
T 1gy7_A 84 ITGDLLIDEEQNPQRFSQVFHLIP 107 (125)
T ss_dssp EEEEEEETTCSSCEEEEEEEEEEE
T ss_pred EEEEEEECCCCCCccEeEEEEEEE
Confidence 3343333444 7889999999875
No 33
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.92 E-value=41 Score=22.06 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=23.1
Q ss_pred cccCCCcEEEEeeceecCceEEEeee
Q 029973 87 ASITPGTVLIILAGRFKGKRVVFLKQ 112 (184)
Q Consensus 87 ~sitpGtvlIiL~Gr~~GKRvVfLKq 112 (184)
.++.+|+.+-|..|.|+|-..++..-
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~ev 31 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSV 31 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCC
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEE
Confidence 45789999999999999999988875
No 34
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=23.77 E-value=43 Score=25.39 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=19.5
Q ss_pred CCcEEEEeeceecCceEEEeeec
Q 029973 91 PGTVLIILAGRFKGKRVVFLKQL 113 (184)
Q Consensus 91 pGtvlIiL~Gr~~GKRvVfLKqL 113 (184)
+|.-+.|+.|.|||....++.--
T Consensus 73 ~g~~V~Iv~G~~rG~~g~L~~id 95 (127)
T 2ckk_A 73 PGKRILVLNGGYRGNEGTLESIN 95 (127)
T ss_dssp TTCEEEECSSTTTTCEEEEEEEE
T ss_pred CCCEEEEEecccCCcEEEEEEEe
Confidence 58888888899999999888763
Done!