BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029974
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2
PE=2 SV=1
Length = 184
Score = 231 bits (590), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/191 (64%), Positives = 144/191 (75%), Gaps = 14/191 (7%)
Query: 1 MSLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQ---AV 57
MS+D +SERVCYVHC++C TILAVSVP +SLF +VTVRCGHC NLL++N+ +L A
Sbjct: 1 MSVDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAP 60
Query: 58 PL-QDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPIR--QKRQRVPS 114
P+ QD Q +QH KDC SSS+ S E + E PRMPPIR +KRQRVPS
Sbjct: 61 PIHQDLQPHRQHTT-SLVTRKDCASSSRSTNNLS--ENIDREAPRMPPIRPPEKRQRVPS 117
Query: 115 AYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAK-LDKAAAY 173
AYNRFIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHFGLKLDGNK+ K LD++ A
Sbjct: 118 AYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQSVA- 176
Query: 174 AEGTQKSNGFY 184
QKSNG+Y
Sbjct: 177 ---GQKSNGYY 184
>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
Length = 164
Score = 197 bits (502), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/167 (61%), Positives = 124/167 (74%), Gaps = 13/167 (7%)
Query: 5 LASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQL 64
+A+E++CY+ CN+CN ILAV+VPCSSLF+IVTVRCGHC NL +VNM +ALQ+ L P
Sbjct: 6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQS--LSRPNF 63
Query: 65 QKQHINLEDSITKDCGSSSKCN-KFSSAFET---AEHETPRMPPIRQKRQRVPSAYNRFI 120
Q + + + GSSS+ + K S T E PP +KRQRVPSAYN+FI
Sbjct: 64 QATNYAVPEY-----GSSSRSHTKIPSRISTRTITEQRIVNRPP--EKRQRVPSAYNQFI 116
Query: 121 KEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKL 167
KEEIQRIKA+NPDISHREAFSTAAKNWAHFPHIHFGL L+ NKQAK+
Sbjct: 117 KEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1
Length = 186
Score = 187 bits (475), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/184 (55%), Positives = 126/184 (68%), Gaps = 10/184 (5%)
Query: 6 ASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQD---P 62
A E VCYVHCN+CNTI AVSVP +S+ NIVTVRCGHC +LL+VN+ +QA+P +D
Sbjct: 8 APEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQD 67
Query: 63 QLQKQHINLEDSITKDCGSSSKCNKFSSAFET--AEHETPRMPPIRQKRQRVPSAYNRFI 120
L+ +++ ++ + + GSSS+ + F EH PP +KRQRVPSAYNRFI
Sbjct: 68 NLKMHNMSFRENYS-EYGSSSRYGRVPMMFSKNDTEHMLHVRPP--EKRQRVPSAYNRFI 124
Query: 121 KEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDKAAAYAEGTQKS 180
KEEI+RIKA+NPDISHREAFSTAAKNWAHFP+IHFGL KLD+A A QK
Sbjct: 125 KEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLG-SHESSKKLDEAIG-APSPQKV 182
Query: 181 NGFY 184
Y
Sbjct: 183 QRLY 186
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1
Length = 207
Score = 173 bits (439), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 101/208 (48%), Positives = 125/208 (60%), Gaps = 26/208 (12%)
Query: 1 MSLDLA-SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP- 58
MS +A +E+VCYVHCN+CNTILAVSVP +S+ NIVTVRCGHC NLL+VN+ + + P
Sbjct: 1 MSAQIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPA 60
Query: 59 LQDPQLQK-QHINLEDSITKDCG-------------------SSSKCNKFSSAFETAEHE 98
LQD Q L G +++ +S + E
Sbjct: 61 LQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQA 120
Query: 99 TPRMPPIRQKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLK 158
PP +KRQRVPSAYNRFIKEEI+RIKA+NPDISHREAFSTAAKNWAH+P+IHFGL
Sbjct: 121 LHARPP--EKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLS 178
Query: 159 L--DGNKQAKLDKAAAYAEGTQKSNGFY 184
+G K+ A ++K GFY
Sbjct: 179 PGHEGGKKLVDVDPIPTAPSSKKIQGFY 206
>sp|Q0JBF0|YAB5_ORYSJ Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1
Length = 266
Score = 173 bits (438), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 119/218 (54%), Gaps = 41/218 (18%)
Query: 8 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM----------------- 50
E++CYVHCN+C+TILAV VPCSSLF VTVRCGHCANLL+VN+
Sbjct: 29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPF 88
Query: 51 ----------------VSALQAVPLQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFET 94
V + QA + +++ S C +++ +SA
Sbjct: 89 GQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANK 148
Query: 95 AEHETPRMPP-------IRQKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNW 147
A P+ P +KRQRVPSAYNRFIK+EIQRIKASNPDI+HREAFS AAKNW
Sbjct: 149 ATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNW 208
Query: 148 AHFPHIHFGLKLD-GNKQAKLDKAAAYAEGTQKSNGFY 184
AHFPHIHFGL D G K+ + E +G Y
Sbjct: 209 AHFPHIHFGLMPDQGLKKTGIQSQDGAGECMLFKDGLY 246
>sp|Q01JG2|YAB5_ORYSI Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2
Length = 266
Score = 173 bits (438), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 119/218 (54%), Gaps = 41/218 (18%)
Query: 8 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM----------------- 50
E++CYVHCN+C+TILAV VPCSSLF VTVRCGHCANLL+VN+
Sbjct: 29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPF 88
Query: 51 ----------------VSALQAVPLQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFET 94
V + QA + +++ S C +++ +SA
Sbjct: 89 GQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANK 148
Query: 95 AEHETPRMPP-------IRQKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNW 147
A P+ P +KRQRVPSAYNRFIK+EIQRIKASNPDI+HREAFS AAKNW
Sbjct: 149 ATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNW 208
Query: 148 AHFPHIHFGLKLD-GNKQAKLDKAAAYAEGTQKSNGFY 184
AHFPHIHFGL D G K+ + E +G Y
Sbjct: 209 AHFPHIHFGLMPDQGLKKTGIQSQDGAGECMLFKDGLY 246
>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1
Length = 169
Score = 170 bits (431), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/161 (54%), Positives = 112/161 (69%), Gaps = 4/161 (2%)
Query: 1 MSLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQ 60
MS+ SE VCYV+CNYCNTIL V+VP + +NIVTVRCGHC +L++++ QA +Q
Sbjct: 1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQ 60
Query: 61 DPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPIR--QKRQRVPSAYNR 118
D Q+Q + + + D S ++ + S+A ++ PIR +KRQRVPSAYNR
Sbjct: 61 DHQVQNRGFQGNNFGSYDIASRNQ--RTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNR 118
Query: 119 FIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKL 159
FIKEEIQRIK SNP+ISHREAFS AAKNWAH P +HFGL +
Sbjct: 119 FIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSV 159
>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
Length = 229
Score = 170 bits (431), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/199 (50%), Positives = 121/199 (60%), Gaps = 24/199 (12%)
Query: 7 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQK 66
S+ +CYV CN+C TILAV+VP +SLF VTVRCG C NLL+VNM S + +P + QLQ
Sbjct: 22 SDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYV--LPASN-QLQL 78
Query: 67 Q-----HINLEDSIT--KDCGSS---------SKCNKFSSAFET-AEHETPRMPPIR--- 106
Q + N +D + +D S+ N S + +HE P+ PP+
Sbjct: 79 QLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPP 138
Query: 107 QKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAK 166
+KRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL D K
Sbjct: 139 EKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDNQPVKK 198
Query: 167 LDKAAAYAEGTQ-KSNGFY 184
+ E GFY
Sbjct: 199 TNMPQQEGEDNMVMKEGFY 217
>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1
Length = 256
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/194 (49%), Positives = 109/194 (56%), Gaps = 40/194 (20%)
Query: 7 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSA------------- 53
+E++CYVHCN C+TILAV VPCSSLF VTVRCGHCANLL+VN+
Sbjct: 22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQL 81
Query: 54 ---------------LQAVPLQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETA--- 95
L V Q P L + + SSS C + A +
Sbjct: 82 HFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAK 141
Query: 96 ----EHETPRMPPIR-----QKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKN 146
E E P+ P +KRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKN
Sbjct: 142 PVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 201
Query: 147 WAHFPHIHFGLKLD 160
WAHFPHIHFGL D
Sbjct: 202 WAHFPHIHFGLMPD 215
>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1
Length = 256
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/194 (49%), Positives = 109/194 (56%), Gaps = 40/194 (20%)
Query: 7 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSA------------- 53
+E++CYVHCN C+TILAV VPCSSLF VTVRCGHCANLL+VN+
Sbjct: 22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQL 81
Query: 54 ---------------LQAVPLQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETA--- 95
L V Q P L + + SSS C + A +
Sbjct: 82 HFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAK 141
Query: 96 ----EHETPRMPPIR-----QKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKN 146
E E P+ P +KRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKN
Sbjct: 142 PVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 201
Query: 147 WAHFPHIHFGLKLD 160
WAHFPHIHFGL D
Sbjct: 202 WAHFPHIHFGLMPD 215
>sp|Q9XFB1|YAB3_ARATH Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1
Length = 240
Score = 160 bits (404), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 115/211 (54%), Gaps = 34/211 (16%)
Query: 6 ASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM---------VSALQA 56
+++++CYVHC++C+T+LAVSVP SSLF VTVRCGHC+NLL+V + VS L
Sbjct: 21 STDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGH 80
Query: 57 VPLQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRM-------------- 102
L P LE+ + G + N S +A H +
Sbjct: 81 SFLPPPPPPPPPNLLEE--MRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQ 138
Query: 103 --------PPIRQKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIH 154
+KRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIH
Sbjct: 139 EMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 198
Query: 155 FGLKLDGNKQAKLDKAAAYAE-GTQKSNGFY 184
FGL D K + E G GFY
Sbjct: 199 FGLMADHPPTKKANVRQQEGEDGMMGREGFY 229
>sp|Q76EJ0|YABDL_ORYSJ Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1
SV=1
Length = 194
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 87/160 (54%), Gaps = 28/160 (17%)
Query: 1 MSLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVN----MVSALQA 56
M L SE +CYV C YCNT+LAV VPC L + VTV+CGHC NL ++ MV L
Sbjct: 1 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSP 60
Query: 57 V-----PLQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPI---RQK 108
P Q P C + T+ +PR P + +K
Sbjct: 61 TDHPLGPFQGP----------------CTDCRRNQPLPLVSPTSNEGSPRAPFVVKPPEK 104
Query: 109 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWA 148
+ R+PSAYNRF++EEIQRIKA+ PDI HREAFS AAKNWA
Sbjct: 105 KHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144
>sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2
Length = 231
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 105/176 (59%), Gaps = 22/176 (12%)
Query: 9 RVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSA------LQAVPLQDP 62
++C+V C +C TIL VSVP +SL +VTVRCGHC +LL+VN++ A L A
Sbjct: 20 QICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSHLD 79
Query: 63 QLQKQHINLEDSITKDCG--SSSKCNKFSSAFETAEHETPRMPPIRQ-------KRQRVP 113
+ K+ + D + ++ + K N ++ ++++E + + Q KRQR P
Sbjct: 80 ETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQRAP 139
Query: 114 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDK 169
SAYN FIKEEI+R+KA NP ++H+EAFS AAKNWAHFP H NK+A D+
Sbjct: 140 SAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH-------NKRAASDQ 188
>sp|Q8L925|CRC_ARATH Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2
Length = 181
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 21/152 (13%)
Query: 7 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQK 66
+E + YV C+ CNTILAV +P + + VTV+CGHC NL + LQ
Sbjct: 18 AEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQG---------- 67
Query: 67 QHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRM--------PPIRQKRQRVPSAYNR 118
H++L + GS K SS+ + + P PP +K+QR+PSAYNR
Sbjct: 68 -HVSLTLQMQSFGGSDYKKGSSSSSSSSTSSDQPPSPSPPFVVKPP--EKKQRLPSAYNR 124
Query: 119 FIKEEIQRIKASNPDISHREAFSTAAKNWAHF 150
F+++EIQRIK++NP+I HREAFS AAKNWA +
Sbjct: 125 FMRDEIQRIKSANPEIPHREAFSAAAKNWAKY 156
>sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1
Length = 313
Score = 110 bits (274), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 60/81 (74%), Gaps = 5/81 (6%)
Query: 103 PPIRQKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGN 162
PP +KRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL D
Sbjct: 215 PP--EKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD-- 270
Query: 163 KQAKLDKAAAYAEGTQKSNGF 183
L K + + Q+ +G
Sbjct: 271 -HQGLKKTSLLPQDHQRKDGL 290
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 4 DLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSAL 54
D E++CYVHC+YC+T+L VSVP SSLF VTVRCGHC++LL VNM L
Sbjct: 54 DSEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNMRGLL 104
>sp|A2PZN8|YAB7_ORYSJ Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1
Length = 169
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 9/152 (5%)
Query: 8 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLN-VNM----VSALQAVPLQDP 62
ER+ V C++C T+L VSVPCSS+ +V V+CGHC+ +L+ VN+ VSA + Q+
Sbjct: 14 ERLGCVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILSAVNLPPSPVSASIELTPQEL 73
Query: 63 QLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPIRQKRQRVPSAYNRFIKE 122
D + D + + + A ++QR PSAYN F+KE
Sbjct: 74 DAGPPPGEYSDESSGD----DREGRDAEDDAPAPAAAAVANKPPGRKQRTPSAYNCFVKE 129
Query: 123 EIQRIKASNPDISHREAFSTAAKNWAHFPHIH 154
EI+RIK+ P+I+H++AFSTAAKNWAH P I
Sbjct: 130 EIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQ 161
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 114 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151
++Y RF KE++ KA NPD + E AK W P
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELP 92
>sp|Q4H0T5|TFAM_TRACR Transcription factor A, mitochondrial OS=Trachypithecus cristatus
GN=TFAM PE=2 SV=1
Length = 246
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 114 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151
S+Y RF KE++ KA NPD E AK W P
Sbjct: 55 SSYLRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELP 92
>sp|Q00059|TFAM_HUMAN Transcription factor A, mitochondrial OS=Homo sapiens GN=TFAM PE=1
SV=1
Length = 246
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 114 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151
S+Y RF KE++ KA NPD E A+ W P
Sbjct: 55 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 92
>sp|Q5D144|TFAM_PIG Transcription factor A, mitochondrial OS=Sus scrofa GN=TFAM PE=2
SV=1
Length = 246
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 114 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151
++Y RF KE++ KA NPD + E A+ W P
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAELWRELP 92
>sp|Q92196|ATPD_AGABI ATP synthase subunit delta, mitochondrial OS=Agaricus bisporus
GN=atpD PE=2 SV=1
Length = 162
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 41 HCANLLNVNMVSALQAVPLQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHE 98
H N L +N+V +A PL+D ++ NL+++ GS S+ +K + E +E
Sbjct: 100 HPNNRLTINVV---EAAPLEDFSIEAIRANLQEANKVAAGSGSEADKMEAQIEAEVYE 154
>sp|Q9XYM0|CRK_DROME Adapter molecule Crk OS=Drosophila melanogaster GN=Crk PE=2 SV=1
Length = 271
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 72 EDSITKDCGS-SSKCNKFSSAFETAEHETPRMPPIRQKRQRVPSAYNRF-IKEEIQR-IK 128
ED+I K+ S S N F S + + R K+ RVP+AY++ +K EI IK
Sbjct: 170 EDAIDKNEPSISGSSNVFESTLKRTDLNRKLPAYARVKQSRVPNAYDKTALKLEIGDIIK 229
Query: 129 ASNPDISHREAFSTAAKNWAHFPHIH 154
+ +I+ + KN HFP H
Sbjct: 230 VTKTNINGQWEGELNGKN-GHFPFTH 254
>sp|P13215|DNBI_SCMVC Major DNA-binding protein OS=Simian cytomegalovirus (strain
Colburn) GN=UL57 PE=2 SV=2
Length = 1160
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 35 VTVRCGHCANLLN-----VNMVSALQAVPLQDPQLQKQHINLEDSITKDCGSSSKCNKFS 89
+++ CG C L + +N VS L I S+ CG + ++
Sbjct: 424 LSLICGTCPQLFSAFIWYLNRVSVYNTGLTGSSTLSNHLIGCSSSLCGACGGTCCHTCYN 483
Query: 90 SAFETAEHETPRMPPIRQKRQRVPSAYNRFIKE 122
+AF + P+MP + +K V +RF+ +
Sbjct: 484 TAFVRVQTRLPQMPRLPKKEPSVVVMQSRFLND 516
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,324,146
Number of Sequences: 539616
Number of extensions: 2370246
Number of successful extensions: 7222
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 7171
Number of HSP's gapped (non-prelim): 54
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)