Query 029974
Match_columns 184
No_of_seqs 117 out of 183
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 10:13:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nm9_A HMG-D, high mobility gr 97.8 2.9E-05 9.8E-10 53.2 5.2 44 108-151 3-46 (73)
2 1hme_A High mobility group pro 97.7 6.6E-05 2.3E-09 51.5 5.1 44 108-151 6-49 (77)
3 4a3n_A Transcription factor SO 97.6 9.5E-05 3.2E-09 49.6 4.7 43 109-151 3-45 (71)
4 1ckt_A High mobility group 1 p 97.6 0.00012 4E-09 49.4 5.2 43 108-150 1-45 (71)
5 1i11_A Transcription factor SO 97.5 0.00015 5.2E-09 50.3 5.6 44 108-151 4-47 (81)
6 1wz6_A HMG-box transcription f 97.5 0.00011 3.9E-09 51.1 5.0 44 108-151 7-50 (82)
7 2cs1_A PMS1 protein homolog 1; 97.5 0.00014 4.7E-09 52.1 5.4 43 109-151 8-50 (92)
8 1hry_A Human SRY; DNA, DNA-bin 97.5 0.00011 3.9E-09 50.2 4.7 44 108-151 4-47 (76)
9 1gt0_D Transcription factor SO 97.5 0.00017 5.9E-09 49.8 5.5 44 108-151 2-45 (80)
10 3f27_D Transcription factor SO 97.5 0.00014 4.8E-09 50.5 5.0 44 108-151 6-49 (83)
11 1wxl_A Single-strand recogniti 97.5 0.00017 5.8E-09 49.3 5.2 42 109-150 4-45 (73)
12 1wgf_A Upstream binding factor 97.5 0.00033 1.1E-08 50.0 6.8 45 107-151 19-63 (90)
13 1j46_A SRY, sex-determining re 97.4 0.00022 7.6E-09 50.2 5.6 44 108-151 4-47 (85)
14 2crj_A SWI/SNF-related matrix- 97.4 0.00023 7.9E-09 50.8 5.6 44 108-151 7-50 (92)
15 2e6o_A HMG box-containing prot 97.4 0.00016 5.5E-09 51.2 4.7 45 107-151 16-60 (87)
16 3u2b_C Transcription factor SO 97.4 0.00019 6.4E-09 49.3 4.7 42 110-151 4-45 (79)
17 2co9_A Thymus high mobility gr 97.4 0.00022 7.5E-09 52.1 5.1 45 107-151 16-60 (102)
18 2eqz_A High mobility group pro 97.3 0.00028 9.7E-09 49.7 5.0 44 108-151 15-60 (86)
19 2lef_A LEF-1 HMG, protein (lym 97.3 0.00041 1.4E-08 48.7 5.6 43 109-151 3-45 (86)
20 4euw_A Transcription factor SO 97.2 0.00052 1.8E-08 50.6 5.7 45 107-151 28-72 (106)
21 1k99_A Upstream binding factor 97.2 0.00038 1.3E-08 50.8 4.8 44 108-151 10-53 (99)
22 2d7l_A WD repeat and HMG-box D 97.1 0.00081 2.8E-08 47.9 5.7 43 109-151 6-49 (81)
23 2gzk_A Sex-determining region 97.1 0.0007 2.4E-08 52.0 5.3 44 108-151 88-131 (159)
24 2yrq_A High mobility group pro 97.0 0.00073 2.5E-08 52.8 5.1 45 107-151 100-144 (173)
25 1aab_A High mobility group pro 97.0 0.00046 1.6E-08 48.1 3.2 43 108-150 7-51 (83)
26 2lhj_A High mobility group pro 97.0 0.00069 2.4E-08 48.8 4.2 45 107-151 21-67 (97)
27 1cg7_A Protein (NON histone pr 96.9 0.00025 8.4E-09 50.9 1.0 45 107-151 19-63 (93)
28 2yrq_A High mobility group pro 96.7 0.0019 6.6E-08 50.4 5.3 45 107-151 14-60 (173)
29 3tq6_A Transcription factor A, 96.7 0.0021 7.1E-08 52.6 5.1 44 108-151 9-52 (214)
30 3tmm_A Transcription factor A, 96.6 0.0023 8E-08 53.1 4.9 45 107-151 40-84 (238)
31 1l8y_A Upstream binding factor 96.5 0.0041 1.4E-07 46.1 5.1 42 108-150 4-45 (91)
32 3fgh_A Transcription factor A, 96.4 0.0026 8.8E-08 42.6 3.4 40 108-151 2-41 (67)
33 2gzk_A Sex-determining region 96.2 0.0063 2.2E-07 46.6 5.2 45 107-151 3-47 (159)
34 1v63_A Nucleolar transcription 95.3 0.024 8.2E-07 41.4 4.9 41 109-151 9-49 (101)
35 2yuk_A Myeloid/lymphoid or mix 93.8 0.014 4.7E-07 43.0 0.5 42 108-151 22-63 (90)
36 1v64_A Nucleolar transcription 93.8 0.056 1.9E-06 39.9 3.8 39 110-152 19-57 (108)
37 3tmm_A Transcription factor A, 93.0 0.024 8.2E-07 47.0 0.8 40 108-151 146-185 (238)
38 3tq6_A Transcription factor A, 92.9 0.025 8.6E-07 46.2 0.8 40 108-151 114-153 (214)
39 2cto_A Novel protein; high mob 89.3 0.17 5.8E-06 37.1 2.1 40 109-150 11-53 (93)
40 1x0t_A Ribonuclease P protein 65.0 2.3 7.7E-05 32.2 1.3 33 14-46 67-104 (120)
41 2k3r_A Ribonuclease P protein 62.4 2.4 8.1E-05 32.3 1.0 33 14-46 62-99 (123)
42 1wii_A Hypothetical UPF0222 pr 59.8 4.6 0.00016 29.4 2.1 42 12-53 23-64 (85)
43 2fiy_A Protein FDHE homolog; F 56.8 3.3 0.00011 36.0 1.1 28 8-45 204-231 (309)
44 2d74_B Translation initiation 35.9 13 0.00045 29.4 1.4 36 11-52 103-141 (148)
45 3uky_C Nuclear CAP-binding pro 29.7 14 0.00049 22.8 0.5 7 107-113 26-32 (32)
46 2e2z_A TIM15; protein import, 27.6 22 0.00076 26.8 1.3 32 14-45 15-47 (100)
47 2g2k_A EIF-5, eukaryotic trans 26.5 33 0.0011 27.8 2.2 37 11-51 95-134 (170)
48 3he5_B Synzip2; heterodimeric 25.3 29 0.001 23.1 1.4 21 114-134 2-22 (52)
49 3sja_C Golgi to ER traffic pro 23.9 38 0.0013 23.7 1.9 30 118-147 9-38 (65)
50 2e9h_A EIF-5, eukaryotic trans 23.4 32 0.0011 27.5 1.6 38 11-52 102-142 (157)
51 3j20_W 30S ribosomal protein S 22.2 33 0.0011 23.9 1.3 12 13-24 35-46 (63)
52 1t6f_A Geminin; coiled-coil, c 22.2 27 0.00091 22.2 0.7 13 121-133 20-32 (37)
53 3fl2_A E3 ubiquitin-protein li 21.6 31 0.0011 24.6 1.1 20 13-41 53-72 (124)
54 1bb1_B Designed, thermostable 21.5 45 0.0015 20.8 1.6 12 119-130 13-24 (36)
55 2ph0_A Uncharacterized protein 20.8 31 0.0011 27.5 1.0 22 120-141 1-22 (174)
56 2ysj_A Tripartite motif-contai 20.7 33 0.0011 21.4 1.0 20 13-41 21-40 (63)
57 2ysl_A Tripartite motif-contai 20.6 34 0.0012 21.7 1.0 22 12-42 20-41 (73)
No 1
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=97.81 E-value=2.9e-05 Score=53.21 Aligned_cols=44 Identities=27% Similarity=0.420 Sum_probs=40.6
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
+..|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 3 ~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 46 (73)
T 3nm9_A 3 KPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMK 46 (73)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 34578999999999999999999999999999999999999865
No 2
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=97.66 E-value=6.6e-05 Score=51.48 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=40.2
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
+..|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 6 ~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (77)
T 1hme_A 6 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 49 (77)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 34578999999999999999999999999999999999999654
No 3
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=97.56 E-value=9.5e-05 Score=49.59 Aligned_cols=43 Identities=26% Similarity=0.460 Sum_probs=38.6
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 109 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 109 RQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 3 ~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (71)
T 4a3n_A 3 IRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 45 (71)
T ss_dssp --CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 4578999999999999999999999999999999999998643
No 4
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=97.56 E-value=0.00012 Score=49.38 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=38.9
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISH--REAFSTAAKNWAHF 150 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~h--kEaF~~aA~nW~~~ 150 (184)
|..|-+|||..|+++.-+.|+++||+++. .|.-+.++..|+..
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~l 45 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTM 45 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhC
Confidence 34678999999999999999999999976 99999999999864
No 5
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.53 E-value=0.00015 Score=50.34 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=40.2
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
+..|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..+
T Consensus 4 ~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 47 (81)
T 1i11_A 4 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMT 47 (81)
T ss_dssp CSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCC
Confidence 34578999999999999999999999999999999999999754
No 6
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=97.53 E-value=0.00011 Score=51.10 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=40.1
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
+..|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 7 ~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (82)
T 1wz6_A 7 GARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLD 50 (82)
T ss_dssp CSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCC
Confidence 34568999999999999999999999999999999999999754
No 7
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=0.00014 Score=52.05 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=39.6
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 109 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 109 RQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
..|-+|||..|+++.-.+|+++||+++..|.-+.++..|+..+
T Consensus 8 pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (92)
T 2cs1_A 8 IKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLS 50 (92)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 3467999999999999999999999999999999999999754
No 8
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=97.52 E-value=0.00011 Score=50.20 Aligned_cols=44 Identities=14% Similarity=0.343 Sum_probs=40.2
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
+..|-+|||..|+++.-+.|++++|+++..|.-+.++..|+..+
T Consensus 4 ~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 47 (76)
T 1hry_A 4 RVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCC
Confidence 34578999999999999999999999999999999999999754
No 9
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=97.50 E-value=0.00017 Score=49.84 Aligned_cols=44 Identities=14% Similarity=0.345 Sum_probs=40.2
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 2 ~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (80)
T 1gt0_D 2 RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLS 45 (80)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 44678999999999999999999999999999999999999654
No 10
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=97.49 E-value=0.00014 Score=50.47 Aligned_cols=44 Identities=25% Similarity=0.470 Sum_probs=39.8
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
|-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 6 ~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (83)
T 3f27_D 6 RIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 49 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 45678999999999999999999999999999999999998754
No 11
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=97.48 E-value=0.00017 Score=49.31 Aligned_cols=42 Identities=21% Similarity=0.446 Sum_probs=39.4
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccC
Q 029974 109 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHF 150 (184)
Q Consensus 109 RQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~ 150 (184)
..|-+|||..|+++.-..|+++||+++..|.-+.++..|+..
T Consensus 4 pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 4 PKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL 45 (73)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh
Confidence 457899999999999999999999999999999999999975
No 12
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.47 E-value=0.00033 Score=49.98 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=40.8
Q ss_pred ccCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 107 QKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 107 EKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
.+..|-+|||..|+++.-..|+++||++++.|.-+.++..|+..+
T Consensus 19 ~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls 63 (90)
T 1wgf_A 19 EKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLS 63 (90)
T ss_dssp CCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 445678999999999999999999999999999999999999743
No 13
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=97.45 E-value=0.00022 Score=50.15 Aligned_cols=44 Identities=14% Similarity=0.343 Sum_probs=40.2
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
+-.|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..+
T Consensus 4 ~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 47 (85)
T 1j46_A 4 RVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (85)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Confidence 34578999999999999999999999999999999999999754
No 14
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=97.43 E-value=0.00023 Score=50.83 Aligned_cols=44 Identities=20% Similarity=0.481 Sum_probs=40.1
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
+..|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 7 ~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (92)
T 2crj_A 7 GPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQ 50 (92)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 34567899999999999999999999999999999999999754
No 15
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=97.43 E-value=0.00016 Score=51.18 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=40.9
Q ss_pred ccCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 107 QKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 107 EKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
.+..|-++||..|+++.-++|++++|+++..|.-+.++..|+..+
T Consensus 16 ~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 60 (87)
T 2e6o_A 16 NKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMK 60 (87)
T ss_dssp SSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCC
Confidence 445678999999999999999999999999999999999999754
No 16
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=97.40 E-value=0.00019 Score=49.29 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=39.1
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 110 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 110 QRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (79)
T 3u2b_C 4 KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLK 45 (79)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCC
Confidence 578999999999999999999999999999999999998644
No 17
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.38 E-value=0.00022 Score=52.08 Aligned_cols=45 Identities=27% Similarity=0.431 Sum_probs=40.8
Q ss_pred ccCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 107 QKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 107 EKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
.+..|-+|||..|+++.-..|+++||+++..|.-+.++..|+..+
T Consensus 16 ~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls 60 (102)
T 2co9_A 16 NEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLG 60 (102)
T ss_dssp CSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCC
Confidence 344578999999999999999999999999999999999999764
No 18
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.00028 Score=49.69 Aligned_cols=44 Identities=23% Similarity=0.371 Sum_probs=38.8
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISH--REAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~h--kEaF~~aA~nW~~~p 151 (184)
+..|-+|||..|+++.-..|++++|+++. .|.-+.++..|+..+
T Consensus 15 ~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 60 (86)
T 2eqz_A 15 KPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMS 60 (86)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSC
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence 34567899999999999999999999974 999999999998754
No 19
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.30 E-value=0.00041 Score=48.72 Aligned_cols=43 Identities=12% Similarity=0.181 Sum_probs=39.7
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 109 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 109 RQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
-.|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..+
T Consensus 3 pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 45 (86)
T 2lef_A 3 IKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALS 45 (86)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 3578999999999999999999999999999999999999654
No 20
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=97.23 E-value=0.00052 Score=50.59 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=40.9
Q ss_pred ccCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 107 QKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 107 EKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
.+-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 28 ~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls 72 (106)
T 4euw_A 28 PHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLN 72 (106)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 445678999999999999999999999999999999999998754
No 21
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=97.23 E-value=0.00038 Score=50.78 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=40.0
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
+..|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 10 ~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls 53 (99)
T 1k99_A 10 FPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELP 53 (99)
T ss_dssp SCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 34567999999999999999999999999999999999999643
No 22
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.13 E-value=0.00081 Score=47.93 Aligned_cols=43 Identities=16% Similarity=0.345 Sum_probs=39.0
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCC-HHHHHHHHHHhhccCC
Q 029974 109 RQRVPSAYNRFIKEEIQRIKASNPDIS-HREAFSTAAKNWAHFP 151 (184)
Q Consensus 109 RQRvpsayN~fmK~ei~riK~~~P~i~-hkEaF~~aA~nW~~~p 151 (184)
..|-+|||..|+++.-..||++||+++ ..|.-+.++..|+..+
T Consensus 6 PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls 49 (81)
T 2d7l_A 6 SGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLS 49 (81)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCC
Confidence 346799999999999999999999998 9999999999998643
No 23
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=97.08 E-value=0.0007 Score=52.02 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=40.2
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
+..|-+|||..|+++.-.+|++++|+++..|.-+.++..|+..+
T Consensus 88 ~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 131 (159)
T 2gzk_A 88 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 131 (159)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSC
T ss_pred cccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 34578999999999999999999999999999999999998754
No 24
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.04 E-value=0.00073 Score=52.81 Aligned_cols=45 Identities=24% Similarity=0.398 Sum_probs=40.8
Q ss_pred ccCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 107 QKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 107 EKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
.+..|-+|||..|+++...+|++++|+++..|.-+.++..|+..+
T Consensus 100 ~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 144 (173)
T 2yrq_A 100 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 144 (173)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred ccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 345678899999999999999999999999999999999999754
No 25
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=96.98 E-value=0.00046 Score=48.06 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=38.3
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISH--REAFSTAAKNWAHF 150 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~h--kEaF~~aA~nW~~~ 150 (184)
+..|-+|||..|+++.-..|++++|+++. .|.-+.++..|+..
T Consensus 7 ~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~l 51 (83)
T 1aab_A 7 KPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTM 51 (83)
T ss_dssp CCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhC
Confidence 34567899999999999999999999975 99999999999864
No 26
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=96.98 E-value=0.00069 Score=48.78 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=40.9
Q ss_pred ccCCCCchhhhHHHHHHHHHHHhhCCCCC--HHHHHHHHHHhhccCC
Q 029974 107 QKRQRVPSAYNRFIKEEIQRIKASNPDIS--HREAFSTAAKNWAHFP 151 (184)
Q Consensus 107 EKRQRvpsayN~fmK~ei~riK~~~P~i~--hkEaF~~aA~nW~~~p 151 (184)
.+..|-+|||..|+++.-.+|+++||+++ ..|.-+.++..|+..+
T Consensus 21 ~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 67 (97)
T 2lhj_A 21 NAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALS 67 (97)
T ss_dssp CCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCC
Confidence 44567899999999999999999999999 9999999999999754
No 27
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=96.87 E-value=0.00025 Score=50.90 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=40.7
Q ss_pred ccCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 107 QKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 107 EKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
.+..|-+|||..|+++.-..|+++||+++..|.-+.++..|+..+
T Consensus 19 ~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 63 (93)
T 1cg7_A 19 NAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALT 63 (93)
T ss_dssp SCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 445678999999999999999999999999999999999999753
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.74 E-value=0.0019 Score=50.41 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=39.9
Q ss_pred ccCCCCchhhhHHHHHHHHHHHhhCCC--CCHHHHHHHHHHhhccCC
Q 029974 107 QKRQRVPSAYNRFIKEEIQRIKASNPD--ISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 107 EKRQRvpsayN~fmK~ei~riK~~~P~--i~hkEaF~~aA~nW~~~p 151 (184)
.+..|-+|||..|+++.-..|+++||+ ++-.|..+.++..|+..+
T Consensus 14 ~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 60 (173)
T 2yrq_A 14 KKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 60 (173)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCC
Confidence 344568899999999999999999999 689999999999998754
No 29
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=96.66 E-value=0.0021 Score=52.64 Aligned_cols=44 Identities=34% Similarity=0.571 Sum_probs=40.3
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
+..|-+|||..|+++....|+++||+++..|..+.++..|+..+
T Consensus 9 ~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls 52 (214)
T 3tq6_A 9 CPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 52 (214)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccC
Confidence 34568999999999999999999999999999999999999765
No 30
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=96.56 E-value=0.0023 Score=53.13 Aligned_cols=45 Identities=33% Similarity=0.560 Sum_probs=41.5
Q ss_pred ccCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 107 QKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 107 EKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
.+..|-+|||..|+++....|+++||+++..|..+.++..|+..+
T Consensus 40 ~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls 84 (238)
T 3tmm_A 40 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 84 (238)
T ss_dssp HSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 566788999999999999999999999999999999999998754
No 31
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=96.45 E-value=0.0041 Score=46.07 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=38.4
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHF 150 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~ 150 (184)
|..|-+|||+.|+.+...++++++|+ ...|.-+.+...|+..
T Consensus 4 kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~l 45 (91)
T 1l8y_A 4 LPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNM 45 (91)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999 9999999999999874
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=96.39 E-value=0.0026 Score=42.56 Aligned_cols=40 Identities=35% Similarity=0.660 Sum_probs=35.2
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
|..|-+|||..|+++.-..+|..+| .|..+.++..|+..+
T Consensus 2 ~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls 41 (67)
T 3fgh_A 2 KPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLS 41 (67)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCC
Confidence 4467889999999999999999887 599999999999754
No 33
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=96.22 E-value=0.0063 Score=46.63 Aligned_cols=45 Identities=13% Similarity=0.342 Sum_probs=40.8
Q ss_pred ccCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 107 QKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 107 EKRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
.+..|-++||-.|++++-.+|+.++|+++..|.-+.++..|+..+
T Consensus 3 ~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls 47 (159)
T 2gzk_A 3 DRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (159)
T ss_dssp TCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhh
Confidence 355678999999999999999999999999999999999998654
No 34
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=95.32 E-value=0.024 Score=41.43 Aligned_cols=41 Identities=12% Similarity=0.357 Sum_probs=32.6
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 109 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 109 RQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
..|-+|||..|+++.+. +..+|+++..|.-+.++..|+..+
T Consensus 9 PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls 49 (101)
T 1v63_A 9 KKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRIS 49 (101)
T ss_dssp CCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCC
Confidence 34578999999999964 344555788999999999999754
No 35
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=93.83 E-value=0.014 Score=42.97 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=34.1
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
+..|.||||-.|+.++-.+||++||+++ +.|..+|+.|+..+
T Consensus 22 aPKRp~sAf~lf~~e~R~kik~enP~~s--~~~~eIse~Wk~ls 63 (90)
T 2yuk_A 22 LGEMATVAPVLYTNINFPNLKEEFPDWT--TRVKQIAKLWRKAS 63 (90)
T ss_dssp HGGGCSSSHHHHHHHHCTTHHHHCCSHH--HHHHHHHHHHHHSC
T ss_pred CCCCCccHHHHHHHHhHHHHHHHCcCcc--chHHHHHHHHHcCC
Confidence 3467899999999999999999999985 33555668898643
No 36
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=93.76 E-value=0.056 Score=39.93 Aligned_cols=39 Identities=18% Similarity=0.488 Sum_probs=35.0
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 029974 110 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 152 (184)
Q Consensus 110 QRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~ph 152 (184)
.|-+|||..|+++.-..|| +++..|.-+.++..|+..+.
T Consensus 19 KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~ 57 (108)
T 1v64_A 19 KPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQ 57 (108)
T ss_dssp CCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCH
Confidence 4678999999999999988 89999999999999998653
No 37
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=93.00 E-value=0.024 Score=47.01 Aligned_cols=40 Identities=35% Similarity=0.655 Sum_probs=35.3
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
+..|-+|||+.|+++...+||.++|+ |..+.++..|+..+
T Consensus 146 ~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 185 (238)
T 3tmm_A 146 KPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 185 (238)
T ss_dssp CCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCC
T ss_pred CCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCC
Confidence 44678999999999999999988876 89999999999754
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=92.91 E-value=0.025 Score=46.19 Aligned_cols=40 Identities=35% Similarity=0.655 Sum_probs=35.3
Q ss_pred cCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029974 108 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 151 (184)
Q Consensus 108 KRQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~aA~nW~~~p 151 (184)
+..|-+|||+.|+++...+|+.++|+ |..+.++..|+..+
T Consensus 114 ~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 153 (214)
T 3tq6_A 114 KPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 153 (214)
T ss_dssp CCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCC
T ss_pred CcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCC
Confidence 44678999999999999999988886 89999999999865
No 39
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.32 E-value=0.17 Score=37.05 Aligned_cols=40 Identities=20% Similarity=0.458 Sum_probs=34.0
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHH---HHhhccC
Q 029974 109 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTA---AKNWAHF 150 (184)
Q Consensus 109 RQRvpsayN~fmK~ei~riK~~~P~i~hkEaF~~a---A~nW~~~ 150 (184)
..|-+|||..|+++.-.+||.+ +++-.|.=+.. ...|+..
T Consensus 11 PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~l 53 (93)
T 2cto_A 11 RKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALL 53 (93)
T ss_dssp CCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcC
Confidence 3467999999999999999998 78888877777 8999874
No 40
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=64.99 E-value=2.3 Score=32.20 Aligned_cols=33 Identities=27% Similarity=0.564 Sum_probs=24.9
Q ss_pred eCCccceeeeccccCCC-cc----ceeeeecccCCCcc
Q 029974 14 HCNYCNTILAVSVPCSS-LF----NIVTVRCGHCANLL 46 (184)
Q Consensus 14 ~CnfC~TiLaVsVPcss-L~----~~VTVRCGHCtnLl 46 (184)
-|.-|+|+|.=|+=|+- +- ..|.++|++|.+.-
T Consensus 67 ~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~k 104 (120)
T 1x0t_A 67 YCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIM 104 (120)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEE
Confidence 59999999997776541 21 25899999998764
No 41
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=62.42 E-value=2.4 Score=32.33 Aligned_cols=33 Identities=21% Similarity=0.603 Sum_probs=24.8
Q ss_pred eCCccceeeeccccCCC-cc----ceeeeecccCCCcc
Q 029974 14 HCNYCNTILAVSVPCSS-LF----NIVTVRCGHCANLL 46 (184)
Q Consensus 14 ~CnfC~TiLaVsVPcss-L~----~~VTVRCGHCtnLl 46 (184)
-|.-|+|+|.=|+=|+- +- ..|.++|++|.+.-
T Consensus 62 ~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~k 99 (123)
T 2k3r_A 62 YCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIM 99 (123)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEE
Confidence 59999999987765541 21 35899999999764
No 42
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=59.81 E-value=4.6 Score=29.38 Aligned_cols=42 Identities=17% Similarity=0.352 Sum_probs=34.3
Q ss_pred eeeCCccceeeeccccCCCccceeeeecccCCCccccccccc
Q 029974 12 YVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSA 53 (184)
Q Consensus 12 YV~CnfC~TiLaVsVPcssL~~~VTVRCGHCtnLlSVNm~~l 53 (184)
+-.|-|||..=+|+|=...--.+-++.|+-|.--...++..|
T Consensus 23 ~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L 64 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYL 64 (85)
T ss_dssp CCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSS
T ss_pred eEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCcc
Confidence 457999999988999888888899999999987665555544
No 43
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=56.75 E-value=3.3 Score=35.98 Aligned_cols=28 Identities=25% Similarity=0.828 Sum_probs=22.7
Q ss_pred CceeeeeCCccceeeeccccCCCccceeeeecccCCCc
Q 029974 8 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANL 45 (184)
Q Consensus 8 E~lCYV~CnfC~TiLaVsVPcssL~~~VTVRCGHCtnL 45 (184)
+..=|.||++|.|- ...|-++|-+|.|-
T Consensus 204 ~G~R~l~Cs~C~t~----------W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 204 TGLRYLSCSLCACE----------WHYVRIKCSHCEES 231 (309)
T ss_dssp CCEEEEEETTTCCE----------EECCTTSCSSSCCC
T ss_pred CCcEEEEeCCCCCE----------EeecCcCCcCCCCC
Confidence 44459999999885 47788999999995
No 44
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=35.91 E-value=13 Score=29.38 Aligned_cols=36 Identities=19% Similarity=0.469 Sum_probs=27.3
Q ss_pred eeeeCCcc---ceeeeccccCCCccceeeeecccCCCcccccccc
Q 029974 11 CYVHCNYC---NTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVS 52 (184)
Q Consensus 11 CYV~CnfC---~TiLaVsVPcssL~~~VTVRCGHCtnLlSVNm~~ 52 (184)
-||.|.-| +|.|.+- + .+...+|.-|..-.+|.++.
T Consensus 103 ~yVlC~~C~sPdT~L~k~---~---r~~~l~C~ACGa~~~V~~~k 141 (148)
T 2d74_B 103 EYVICPVCGSPDTKIIKR---D---RFHFLKCEACGAETPIQHLL 141 (148)
T ss_dssp HHSSCSSSCCTTCCCCBS---S---SSBCCCCSSSCCCCCCCC--
T ss_pred HEEECCCCCCcCcEEEEe---C---CEEEEEecCCCCCccccchh
Confidence 48999999 5777762 2 56778999999999998764
No 45
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=29.72 E-value=14 Score=22.77 Aligned_cols=7 Identities=71% Similarity=1.227 Sum_probs=6.2
Q ss_pred ccCCCCc
Q 029974 107 QKRQRVP 113 (184)
Q Consensus 107 EKRQRvp 113 (184)
-||||+|
T Consensus 26 pKRQR~P 32 (32)
T 3uky_C 26 PKRQRIP 32 (32)
T ss_pred cccccCC
Confidence 6899998
No 46
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=27.60 E-value=22 Score=26.80 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=19.9
Q ss_pred eCCccceeeeccccCCC-ccceeeeecccCCCc
Q 029974 14 HCNYCNTILAVSVPCSS-LFNIVTVRCGHCANL 45 (184)
Q Consensus 14 ~CnfC~TiLaVsVPcss-L~~~VTVRCGHCtnL 45 (184)
-|+-|+|-=+-.+-=.+ =--+|-|+|..|.|.
T Consensus 15 TC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 15 TCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEEEECTTTCCE
T ss_pred EccCCCCcchhhcCHHHhhCCEEEEEcCCCccc
Confidence 47888775432221111 124799999999996
No 47
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=26.52 E-value=33 Score=27.81 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=28.1
Q ss_pred eeeeCCcc---ceeeeccccCCCccceeeeecccCCCccccccc
Q 029974 11 CYVHCNYC---NTILAVSVPCSSLFNIVTVRCGHCANLLNVNMV 51 (184)
Q Consensus 11 CYV~CnfC---~TiLaVsVPcssL~~~VTVRCGHCtnLlSVNm~ 51 (184)
-||.|.-| +|.|.+.. -+ .+...+|--|....+|.++
T Consensus 95 ~YVlC~~C~sPdT~L~k~~-~~---r~~~l~C~ACGa~~~V~~~ 134 (170)
T 2g2k_A 95 KFVLCPECENPETDLHVNP-KK---QTIGNSCKACGYRGMLDTH 134 (170)
T ss_dssp HHHSCTTTSSSCEEEEEET-TT---TEEEEEETTTCCCCCSCSS
T ss_pred HeEECCCCCCCccEEEEec-CC---CEEEEEccccCCccccccc
Confidence 48999999 57777621 12 3466899999999999886
No 48
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=25.31 E-value=29 Score=23.11 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHHHhhCCCC
Q 029974 114 SAYNRFIKEEIQRIKASNPDI 134 (184)
Q Consensus 114 sayN~fmK~ei~riK~~~P~i 134 (184)
||-|.|++..|+|+|..|-.+
T Consensus 2 sarnaylrkkiarlkkdnlql 22 (52)
T 3he5_B 2 SARNAYLRKKIARLKKDNLQL 22 (52)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhhhhhhh
Confidence 678999999999999877544
No 49
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=23.91 E-value=38 Score=23.71 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Q 029974 118 RFIKEEIQRIKASNPDISHREAFSTAAKNW 147 (184)
Q Consensus 118 ~fmK~ei~riK~~~P~i~hkEaF~~aA~nW 147 (184)
+=++.||.+|+++.-.|+-.+-|..=||+=
T Consensus 9 ~~l~~E~~~lk~E~~stSaQDeFAKWaKL~ 38 (65)
T 3sja_C 9 LAKVKERHELKEFNNSISAQDNYAKWTKNN 38 (65)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 447899999999999999999998776653
No 50
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.44 E-value=32 Score=27.50 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=28.2
Q ss_pred eeeeCCcc---ceeeeccccCCCccceeeeecccCCCcccccccc
Q 029974 11 CYVHCNYC---NTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVS 52 (184)
Q Consensus 11 CYV~CnfC---~TiLaVsVPcssL~~~VTVRCGHCtnLlSVNm~~ 52 (184)
-||.|.-| +|.|.+. . ==.+...+|--|....+|.++.
T Consensus 102 ~YVlC~~C~sPdT~L~~~-~---~~r~~~l~C~ACGa~~~V~~~~ 142 (157)
T 2e9h_A 102 KFVLCPECENPETDLHVN-P---KKQTIGNSCKACGYRGMLDTHH 142 (157)
T ss_dssp HTTSCTTTCCSCCEEEEE-T---TTTEEEEECSSSCCEEECCCCS
T ss_pred HeEECCCCCCCccEEEEe-c---CCCEEEEEccCCCCCCcccchh
Confidence 48999999 4666652 0 1246788999999999998763
No 51
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.24 E-value=33 Score=23.90 Aligned_cols=12 Identities=33% Similarity=0.719 Sum_probs=9.8
Q ss_pred eeCCccceeeec
Q 029974 13 VHCNYCNTILAV 24 (184)
Q Consensus 13 V~CnfC~TiLaV 24 (184)
|.|..|.|+|+=
T Consensus 35 V~C~~Cgt~L~~ 46 (63)
T 3j20_W 35 VRCLICGATLVE 46 (63)
T ss_dssp EECSSSCCEEEE
T ss_pred EEccCcCCEEec
Confidence 778999998873
No 52
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=22.19 E-value=27 Score=22.24 Aligned_cols=13 Identities=38% Similarity=0.647 Sum_probs=10.4
Q ss_pred HHHHHHHHhhCCC
Q 029974 121 KEEIQRIKASNPD 133 (184)
Q Consensus 121 K~ei~riK~~~P~ 133 (184)
.+||+|+|++|-+
T Consensus 20 deeIa~Lk~eN~e 32 (37)
T 1t6f_A 20 DNEIARLKKENKE 32 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH
Confidence 4799999998743
No 53
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=21.57 E-value=31 Score=24.58 Aligned_cols=20 Identities=25% Similarity=0.695 Sum_probs=14.0
Q ss_pred eeCCccceeeeccccCCCccceeeeeccc
Q 029974 13 VHCNYCNTILAVSVPCSSLFNIVTVRCGH 41 (184)
Q Consensus 13 V~CnfC~TiLaVsVPcssL~~~VTVRCGH 41 (184)
..|..|..++. +.|+..|||
T Consensus 53 ~~C~IC~~~~~---------~p~~~~CgH 72 (124)
T 3fl2_A 53 FQCICCQELVF---------RPITTVCQH 72 (124)
T ss_dssp TBCTTTSSBCS---------SEEECTTSC
T ss_pred CCCCcCChHHc---------CcEEeeCCC
Confidence 45888866543 567778999
No 54
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=21.52 E-value=45 Score=20.79 Aligned_cols=12 Identities=58% Similarity=0.656 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhh
Q 029974 119 FIKEEIQRIKAS 130 (184)
Q Consensus 119 fmK~ei~riK~~ 130 (184)
-|.||||.||++
T Consensus 13 aieeeiqaikee 24 (36)
T 1bb1_B 13 AIEEEIQAIKEE 24 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 466777777765
No 55
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural genomics, PSI-2, protein structure initiative; 1.85A {Pectobacterium carotovorum}
Probab=20.78 E-value=31 Score=27.49 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhCCCCCHHHHHH
Q 029974 120 IKEEIQRIKASNPDISHREAFS 141 (184)
Q Consensus 120 mK~ei~riK~~~P~i~hkEaF~ 141 (184)
|+++|..++++||++..++.-.
T Consensus 1 m~~~~~~~~~~~P~~~~~dla~ 22 (174)
T 2ph0_A 1 MTMTLNELLATNPDGTLEDIAG 22 (174)
T ss_dssp -CCCHHHHHHTCCCSCHHHHHH
T ss_pred ChHHHHHHHHHCcCchHHHHHH
Confidence 6778999999999998887543
No 56
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.70 E-value=33 Score=21.37 Aligned_cols=20 Identities=50% Similarity=0.972 Sum_probs=14.0
Q ss_pred eeCCccceeeeccccCCCccceeeeeccc
Q 029974 13 VHCNYCNTILAVSVPCSSLFNIVTVRCGH 41 (184)
Q Consensus 13 V~CnfC~TiLaVsVPcssL~~~VTVRCGH 41 (184)
..|..|..++. +.|+..|||
T Consensus 21 ~~C~IC~~~~~---------~p~~~~CgH 40 (63)
T 2ysj_A 21 VICPICLDILQ---------KPVTIDCGH 40 (63)
T ss_dssp CBCTTTCSBCS---------SCEECTTSS
T ss_pred CCCCcCCchhC---------CeEEeCCCC
Confidence 56888876543 456678998
No 57
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.60 E-value=34 Score=21.73 Aligned_cols=22 Identities=45% Similarity=0.816 Sum_probs=15.2
Q ss_pred eeeCCccceeeeccccCCCccceeeeecccC
Q 029974 12 YVHCNYCNTILAVSVPCSSLFNIVTVRCGHC 42 (184)
Q Consensus 12 YV~CnfC~TiLaVsVPcssL~~~VTVRCGHC 42 (184)
...|..|-..+. +.|+..|||-
T Consensus 20 ~~~C~IC~~~~~---------~~~~~~CgH~ 41 (73)
T 2ysl_A 20 EVICPICLDILQ---------KPVTIDCGHN 41 (73)
T ss_dssp CCBCTTTCSBCS---------SEEECTTCCE
T ss_pred CCEeccCCcccC---------CeEEcCCCCh
Confidence 457888876553 4566789994
Done!