BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029976
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P11432|ELI_PEA Early light-induced protein, chloroplastic OS=Pisum sativum PE=2
SV=1
Length = 196
Score = 207 bits (526), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/194 (59%), Positives = 142/194 (73%), Gaps = 28/194 (14%)
Query: 14 SVVAARVTGIR-KSGVYQFSSVK--YLPGTLQRNVSLSVRCMAKNEQQKDQS-------- 62
S+++ +T I +S V QF+++ Y+P TL+RNVSL VR MA+ E K+QS
Sbjct: 8 SIMSNSMTNISSRSRVNQFTNIPSVYIP-TLRRNVSLKVRSMAEGEP-KEQSKVAVDPTT 65
Query: 63 ------------TQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQ 110
T+PPK+ STKFSD+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ
Sbjct: 66 PTASTPTPQPAYTRPPKM---STKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQ 122
Query: 111 DVFAQLSDGGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLV 170
+ QLS GGVAWFLGTSVLLS+ASL+P F+GVSVESKS M+SDAE WNGR AM+GLV
Sbjct: 123 GLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLV 182
Query: 171 ALAVTEFVKGSTLV 184
ALA TEFVKG++LV
Sbjct: 183 ALAFTEFVKGTSLV 196
>sp|Q01931|DS22_CRAPL Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma
plantagineum GN=DSP-22 PE=2 SV=1
Length = 199
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 108/157 (68%), Gaps = 13/157 (8%)
Query: 41 LQRNVSLSVRCMAKNE------------QQKDQSTQPPKLPRISTKFS-DVFAFSGPAPE 87
++RN +VR M ++ P ++TK + D+F+F G APE
Sbjct: 41 MRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPE 100
Query: 88 RINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTSVLLSVASLVPLFKGVSVES 147
RINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+
Sbjct: 101 RINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEA 160
Query: 148 KSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 184
K++GF SDAE+WNGRFAM+GLVALA TE+VKG L+
Sbjct: 161 KNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197
>sp|P14897|ELI9_HORVU Low molecular mass early light-inducible protein HV90,
chloroplastic OS=Hordeum vulgare PE=2 SV=1
Length = 172
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/140 (52%), Positives = 93/140 (66%), Gaps = 1/140 (0%)
Query: 46 SLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVE 105
+L R + Q + S PP P+ ST D AFSGPAPERINGRLAM+GFV ALAVE
Sbjct: 31 ALGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVE 90
Query: 106 LSKGQDVFAQLSDG-GVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRF 164
+G + +QL G G AWF T +LS+ASLVPL +G S E ++ M ++AELWNGRF
Sbjct: 91 AGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRF 150
Query: 165 AMMGLVALAVTEFVKGSTLV 184
AM+GLVALA TE + G+ +
Sbjct: 151 AMLGLVALAATEIITGAPFI 170
>sp|P14895|ELI5_HORVU High molecular mass early light-inducible protein HV58,
chloroplastic OS=Hordeum vulgare PE=2 SV=1
Length = 231
Score = 142 bits (359), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 93/129 (72%), Gaps = 7/129 (5%)
Query: 63 TQPPKLPRISTKFS-----DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS 117
T P P+ TK + D AFSGPAPERINGRLAM+GFVAAL+VE ++G + Q+
Sbjct: 101 TTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVG 160
Query: 118 --DGGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVT 175
G+AWFL T+ + SVASL+PL +G SVESKS G ++DAELWNGRFAM+GLVALA T
Sbjct: 161 MWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAAT 220
Query: 176 EFVKGSTLV 184
EF+ G+ V
Sbjct: 221 EFITGAPFV 229
>sp|P14896|ELI6_HORVU Low molecular mass early light-inducible protein HV60,
chloroplastic OS=Hordeum vulgare PE=2 SV=1
Length = 167
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 100/156 (64%), Gaps = 2/156 (1%)
Query: 31 FSSVKYLP-GTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERI 89
F+ LP G+ + +L R + Q + + PP P+ ST D AFSGPAPERI
Sbjct: 10 FAGAAVLPRGSARSLPALGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERI 69
Query: 90 NGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTSVLLSVASLVPLFKGVSVESK 148
NGRLAM+GFV ALAVE +G + +QL G G AWF T +LS+ASLVPL +G S E +
Sbjct: 70 NGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGR 129
Query: 149 SDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 184
+ M ++AELWNGRFAM+GLVALA TE + G+ +
Sbjct: 130 AGAIMNANAELWNGRFAMIGLVALAATEIITGTPFI 165
>sp|P27516|CBR_DUNBA Carotene biosynthesis-related protein CBR, chloroplastic
OS=Dunaliella bardawil GN=CBR PE=1 SV=1
Length = 172
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 67/110 (60%), Gaps = 8/110 (7%)
Query: 76 SDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTSVLLSVAS 135
++V FSG APE INGRLAM+GFVAAL ELS G+ V QL D L T VL S AS
Sbjct: 68 TEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAAS 125
Query: 136 LVPLFKGVSVESKSD--GFMTSDAELWNGRFAMMGLVALAVTEFVKGSTL 183
L+P F K D G T DAE+ NGRFAM+G A+ V E ++G L
Sbjct: 126 LIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIAL 171
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 68 LPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVF 113
+P + + D P E NGR AMIGF A L E +G +F
Sbjct: 127 IPAFARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIALF 172
>sp|Q8YQR8|HEMH_NOSS1 Ferrochelatase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=hemH
PE=3 SV=1
Length = 388
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 153 MTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 184
MTS AE+WNGR AM+G +AL + E V G L+
Sbjct: 351 MTSSAEVWNGRIAMLGFIAL-IIELVTGQGLL 381
>sp|Q3MCT9|HEMH_ANAVT Ferrochelatase OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=hemH PE=3 SV=1
Length = 388
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 153 MTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 184
MTS AE+WNGR AM+G +AL + E V G L+
Sbjct: 351 MTSSAEVWNGRIAMLGFIAL-IIELVTGQGLL 381
>sp|P51355|YCF17_PORPU Uncharacterized protein ycf17 OS=Porphyra purpurea GN=ycf17 PE=3
SV=1
Length = 48
Score = 36.6 bits (83), Expect = 0.085, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 154 TSDAELWNGRFAMMGLVALAVTEFVKGSTLV 184
T AE WNGRFAM+G +A+ E V G L+
Sbjct: 11 TDSAETWNGRFAMIGFMAVIFIELVTGKGLL 41
>sp|B7KGB9|HEMH_CYAP7 Ferrochelatase OS=Cyanothece sp. (strain PCC 7424) GN=hemH PE=3
SV=1
Length = 387
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 153 MTSDAELWNGRFAMMGLVALAVTEFVKGS 181
MT+ AE+WNGR AM+G +AL + E + G
Sbjct: 351 MTTAAEVWNGRLAMIGFIALLI-ELISGH 378
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 24 RKSGVYQFSSVKYL---PGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFA 80
++G+ F V L P + L + + +N ++ T+P K ++ + +
Sbjct: 291 EEAGIDHFQRVPALNTHPIFIDSLAQLVINSLTENSYTFEEITRPKKNMKMYPQERWEWG 350
Query: 81 FSGPAPERINGRLAMIGFVAALAVELSKGQ 110
+ A E NGRLAMIGF+ AL +EL G
Sbjct: 351 MTTAA-EVWNGRLAMIGFI-ALLIELISGH 378
>sp|B2J9P0|HEMH_NOSP7 Ferrochelatase OS=Nostoc punctiforme (strain ATCC 29133 / PCC
73102) GN=hemH PE=3 SV=1
Length = 388
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 153 MTSDAELWNGRFAMMGLVALAVTEFVKGS 181
+T+ AE+WNGR AM+G +AL + E + G
Sbjct: 351 LTTSAEVWNGRIAMLGFIAL-IIELITGH 378
>sp|Q8DGU6|HEMH_THEEB Ferrochelatase OS=Thermosynechococcus elongatus (strain BP-1)
GN=hemH PE=3 SV=2
Length = 388
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 153 MTSDAELWNGRFAMMGLVALAVTEFVKG 180
MTS AE WNGR AM+G +AL + E + G
Sbjct: 352 MTSAAERWNGRLAMLGFLALMI-ELISG 378
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 85 APERINGRLAMIGFVAALAVELSKGQ 110
A ER NGRLAM+GF+ AL +EL GQ
Sbjct: 355 AAERWNGRLAMLGFL-ALMIELISGQ 379
>sp|Q1XDD2|YCF17_PORYE Uncharacterized protein ycf17 OS=Porphyra yezoensis GN=ycf17 PE=3
SV=1
Length = 48
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 154 TSDAELWNGRFAMMGLVALAVTEFVKGSTLV 184
T AE WNGRFAM+G +++ E V G L+
Sbjct: 11 TDSAETWNGRFAMIGFISVIFIEVVTGQGLL 41
>sp|P54225|HEMH_SYNY3 Ferrochelatase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=hemH PE=3 SV=1
Length = 387
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 153 MTSDAELWNGRFAMMGLVALAVTEFVKGS 181
+T+ AE+WNGR AM+G +AL V E + G
Sbjct: 351 LTTAAEVWNGRLAMLGFIALLV-ELISGQ 378
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 85 APERINGRLAMIGFVAALAVELSKGQ 110
A E NGRLAM+GF+ AL VEL GQ
Sbjct: 354 AAEVWNGRLAMLGFI-ALLVELISGQ 378
>sp|B0JRN7|HEMH_MICAN Ferrochelatase OS=Microcystis aeruginosa (strain NIES-843) GN=hemH
PE=3 SV=1
Length = 387
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 153 MTSDAELWNGRFAMMGLVALAVTEFVKGS 181
MT+ AE+WNGR AM+G +A+ + E + G
Sbjct: 351 MTTAAEVWNGRLAMIGFLAI-IIELITGQ 378
>sp|P48367|YCF17_CYAPA Uncharacterized protein ycf17 OS=Cyanophora paradoxa GN=ycf17 PE=3
SV=1
Length = 49
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 151 GFMTSDAELWNGRFAMMGLVALAVTEFVKG 180
GF TS AE WNGR AM+G +A +TE + G
Sbjct: 11 GF-TSGAENWNGRLAMLGFIAALLTESLTG 39
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 87 ERINGRLAMIGFVAALAVELSKGQ 110
E NGRLAM+GF+AAL E GQ
Sbjct: 17 ENWNGRLAMLGFIAALLTESLTGQ 40
>sp|B7K399|HEMH_CYAP8 Ferrochelatase OS=Cyanothece sp. (strain PCC 8801) GN=hemH PE=3
SV=1
Length = 387
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 153 MTSDAELWNGRFAMMGLVALAVTEFVKGS 181
+T+ AE+WNGR AM+G +AL + E + G
Sbjct: 351 LTTAAEVWNGRLAMVGFIALLI-ELISGH 378
>sp|Q5N2B2|HEMH_SYNP6 Ferrochelatase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
SAUG 1402/1) GN=hemH PE=3 SV=1
Length = 387
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 131 LSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAV 174
L +L+P + + + + +T +AE+WNGR AM+G +AL V
Sbjct: 329 LEDVTLLPKKVKLYPQERWEWGITLNAEVWNGRIAMLGFLALLV 372
>sp|Q31S00|HEMH_SYNE7 Ferrochelatase OS=Synechococcus elongatus (strain PCC 7942) GN=hemH
PE=3 SV=1
Length = 387
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 131 LSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAV 174
L +L+P + + + + +T +AE+WNGR AM+G +AL V
Sbjct: 329 LEDVTLLPKKVKLYPQERWEWGITLNAEVWNGRIAMLGFLALLV 372
>sp|Q10WR6|HEMH_TRIEI Ferrochelatase OS=Trichodesmium erythraeum (strain IMS101) GN=hemH
PE=3 SV=1
Length = 387
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 153 MTSDAELWNGRFAMMGLVALAVTEFVKG 180
+T+ AE+WNGR AM+G +AL + E + G
Sbjct: 351 LTTTAEVWNGRLAMVGFMAL-LLELITG 377
>sp|Q0I8L9|HEMH_SYNS3 Ferrochelatase OS=Synechococcus sp. (strain CC9311) GN=hemH PE=3
SV=1
Length = 391
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 116 LSDGGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVT 175
L+D VA G V L A+ +P + + K + + +E+WNGR AM+G A +
Sbjct: 318 LADLVVASLEGPEVNLDQAAELPTTVKLYPQEKWEWGWNNSSEVWNGRLAMIGFSAF-LL 376
Query: 176 EFVKGS 181
E + G
Sbjct: 377 ELISGH 382
>sp|Q54FF3|GEFK_DICDI Ras guanine nucleotide exchange factor K OS=Dictyostelium discoideum
GN=gefK PE=2 SV=1
Length = 1557
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 18 ARVTGIRKSGVYQFSSVKYLPGTLQR-------NVSLSVRCMA--KNEQQKDQSTQPPKL 68
A ++GI S + + +KY G L + N+ + C KN + K +++ PP +
Sbjct: 1410 AVISGINNSAILR---LKYTRGLLSKKYLDILENLEKEMSCEGSYKNYRDKLKNSDPPVV 1466
Query: 69 PRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTS 128
P I +D+ P I G L + +K ++ +S+ + + T
Sbjct: 1467 PYIGVYLTDLTFIEEGNPNIIRGNL----------INFAKYYLIYRVISE--IQQYQWTE 1514
Query: 129 VLLSVASLVPLF-KGVSVESKSD 150
L+VA ++ F + VS+ S SD
Sbjct: 1515 YQLNVAPIIQTFIRDVSISSTSD 1537
>sp|Q95307|RL13A_PIG 60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A
PE=2 SV=2
Length = 137
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 1 MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYL 37
+AA +A Q +LG VV R GI SG + + +KYL
Sbjct: 15 LAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYL 51
>sp|P19253|RL13A_MOUSE 60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4
Length = 203
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 1 MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYL 37
+AA +A Q +LG VV R GI SG + + +KYL
Sbjct: 19 LAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYL 55
>sp|P35427|RL13A_RAT 60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1
SV=2
Length = 203
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 1 MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYL 37
+AA +A Q +LG VV R GI SG + + +KYL
Sbjct: 19 LAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYL 55
>sp|P40429|RL13A_HUMAN 60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2
Length = 203
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 1 MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYL 37
+AA +A Q +LG VV R GI SG + + +KYL
Sbjct: 19 LAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYL 55
>sp|Q3SZ90|RL13A_BOVIN 60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3
Length = 203
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 1 MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYL 37
+AA +A Q +LG VV R GI SG + + +KYL
Sbjct: 19 LAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYL 55
>sp|Q4R8Z2|RL13A_MACFA 60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2
SV=3
Length = 203
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 1 MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYL 37
+AA +A Q +LG VV R GI SG + + +KYL
Sbjct: 19 LAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYL 55
>sp|Q5RA38|RL13A_PONAB 60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3
Length = 203
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 1 MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYL 37
+AA +A Q +LG VV R GI SG + + +KYL
Sbjct: 19 LAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYL 55
>sp|A5GS98|HEMH_SYNR3 Ferrochelatase OS=Synechococcus sp. (strain RCC307) GN=hemH PE=3
SV=1
Length = 387
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 126 GTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGS 181
G V L A+ +P + + K + +E+WNGR AM+G A V E + G
Sbjct: 324 GPEVDLDEAAALPARTKLYPQEKWSWGWNNSSEVWNGRLAMLGFSAFLV-ELISGH 378
>sp|Q8C115|PKHH2_MOUSE Pleckstrin homology domain-containing family H member 2 OS=Mus
musculus GN=Plekhh2 PE=2 SV=3
Length = 1491
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 50 RCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAP---ERINGRLAMIGFVAALAVE 105
RC+ + +Q D+ +P ++ +ST + + S P +NG ++GF A+ VE
Sbjct: 1085 RCVERTQQNGDREARPSRMEILSTLLRNPYHHSRPFSIPVHFMNGLYQVVGFDASTTVE 1143
>sp|Q7U5G0|HEMH_SYNPX Ferrochelatase OS=Synechococcus sp. (strain WH8102) GN=hemH PE=3
SV=1
Length = 391
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 126 GTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGS 181
G V L A+ +P + + K + + +E+WNGR AM+G A + E + G
Sbjct: 328 GPEVSLDAAAELPTKVKLYPQEKWEWGWNNSSEVWNGRLAMLGFSAF-LLELISGH 382
>sp|Q91487|RL13A_SALTR 60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a
PE=2 SV=1
Length = 189
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 1 MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYL 37
+AA +A + +LG VV R GI SG + + +KYL
Sbjct: 5 LAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYL 41
>sp|A2BQ06|HEMH_PROMS Ferrochelatase OS=Prochlorococcus marinus (strain AS9601) GN=hemH
PE=3 SV=1
Length = 391
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 116 LSDGGVAWFLGTSVLLSVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVT 175
LSD ++ G V L AS +P + + K + +E+WNGR AM+ + L +
Sbjct: 318 LSDLVISCLEGPQVNLEEASKLPEKVKLYPQEKWQWGWNNSSEVWNGRVAMIIFLVLFI- 376
Query: 176 EFVKGS 181
E + GS
Sbjct: 377 ELISGS 382
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,909,282
Number of Sequences: 539616
Number of extensions: 2032287
Number of successful extensions: 5372
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5289
Number of HSP's gapped (non-prelim): 76
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)