Query 029976
Match_columns 184
No_of_seqs 178 out of 681
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:35:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00504 Chloroa_b-bind: Chlor 99.8 4E-21 8.6E-26 153.1 7.5 102 76-177 15-156 (156)
2 PLN00089 fucoxanthin-chlorophy 99.8 4.1E-20 9E-25 155.8 12.8 111 74-184 57-207 (209)
3 PLN00101 Photosystem I light-h 99.8 3.9E-20 8.6E-25 159.5 11.8 109 76-184 76-230 (250)
4 PLN00100 light-harvesting comp 99.8 1.5E-19 3.3E-24 155.4 11.3 108 76-184 58-190 (246)
5 PLN00120 fucoxanthin-chlorophy 99.8 1.3E-19 2.9E-24 152.0 9.0 106 74-181 45-195 (202)
6 PLN00048 photosystem I light h 99.8 1.7E-19 3.8E-24 156.4 9.8 108 76-184 65-240 (262)
7 PLN00098 light-harvesting comp 99.8 4.7E-19 1E-23 154.1 11.3 108 76-184 85-245 (267)
8 PLN00097 photosystem I light h 99.8 5.8E-19 1.3E-23 151.8 11.7 109 76-184 67-227 (244)
9 PLN00099 light-harvesting comp 99.8 1.3E-18 2.9E-23 149.6 11.4 107 76-184 67-217 (243)
10 PLN00170 photosystem II light- 99.7 1.6E-17 3.6E-22 143.6 12.6 40 76-115 80-127 (255)
11 PLN00025 photosystem II light 99.7 1.2E-17 2.5E-22 145.0 8.9 108 76-184 76-236 (262)
12 PLN00147 light-harvesting comp 99.7 1.4E-17 3.1E-22 143.8 9.3 109 76-184 68-230 (252)
13 PLN00187 photosystem II light- 99.7 1.4E-17 3E-22 146.0 7.5 109 75-184 124-265 (286)
14 PLN00171 photosystem light-ha 99.7 6E-17 1.3E-21 143.9 9.6 36 76-111 133-176 (324)
15 PHA02337 putative high light i 99.3 2.9E-12 6.3E-17 80.1 4.2 31 153-183 1-31 (35)
16 PHA02337 putative high light i 99.1 7.4E-11 1.6E-15 73.8 3.4 29 84-112 3-31 (35)
17 PLN00014 light-harvesting-like 99.0 2.8E-10 6E-15 97.5 4.7 47 83-129 159-207 (250)
18 PLN00014 light-harvesting-like 98.4 2.1E-07 4.5E-12 80.0 2.8 30 155-184 160-189 (250)
19 PLN00084 photosystem II subuni 98.3 3.8E-07 8.2E-12 75.7 2.9 31 154-184 135-166 (214)
20 PLN00084 photosystem II subuni 98.3 1.5E-06 3.3E-11 72.1 5.5 36 84-119 136-172 (214)
21 PF00504 Chloroa_b-bind: Chlor 98.3 4.3E-07 9.3E-12 72.3 2.0 30 153-182 28-57 (156)
22 PLN00101 Photosystem I light-h 98.2 4.6E-07 1E-11 78.7 2.2 45 74-118 187-235 (250)
23 PLN00147 light-harvesting comp 98.2 9.4E-07 2E-11 76.9 3.2 43 76-118 185-235 (252)
24 PLN00100 light-harvesting comp 98.2 7.8E-07 1.7E-11 77.1 2.0 43 76-118 150-195 (246)
25 PLN00025 photosystem II light 98.1 1.3E-06 2.9E-11 76.3 2.9 47 72-118 187-241 (262)
26 PLN00097 photosystem I light h 98.1 1.8E-06 4E-11 74.8 3.4 46 73-118 179-232 (244)
27 PLN00048 photosystem I light h 98.1 1.4E-06 3.1E-11 76.1 2.7 31 153-183 84-114 (262)
28 PLN00098 light-harvesting comp 98.1 1.6E-06 3.5E-11 76.0 2.7 31 153-183 99-129 (267)
29 PLN00099 light-harvesting comp 98.1 2.6E-06 5.6E-11 73.8 3.2 45 74-118 169-222 (243)
30 PLN00089 fucoxanthin-chlorophy 98.0 4.8E-06 1E-10 70.6 3.6 38 76-113 161-207 (209)
31 PLN00187 photosystem II light- 98.0 5.3E-06 1.2E-10 73.4 3.4 44 75-118 219-270 (286)
32 PLN00170 photosystem II light- 97.9 6.8E-06 1.5E-10 71.7 2.8 31 153-183 94-124 (255)
33 PLN00171 photosystem light-ha 97.9 9.5E-06 2.1E-10 72.8 3.4 44 75-118 257-308 (324)
34 PLN00120 fucoxanthin-chlorophy 97.6 4.8E-05 1E-09 64.2 3.8 26 85-110 170-195 (202)
35 PLN02449 ferrochelatase 77.1 2 4.4E-05 40.9 2.8 21 164-184 463-483 (485)
36 PLN02449 ferrochelatase 60.7 6.8 0.00015 37.4 2.6 22 93-114 463-484 (485)
37 PF07123 PsbW: Photosystem II 35.2 2.1E+02 0.0045 23.2 6.9 23 33-58 31-53 (138)
38 PLN00077 photosystem II reacti 31.3 1.7E+02 0.0036 23.3 5.7 22 33-57 21-43 (128)
39 PHA03159 hypothetical protein; 22.3 80 0.0017 25.6 2.5 19 159-177 71-90 (160)
No 1
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.84 E-value=4e-21 Score=153.07 Aligned_cols=102 Identities=26% Similarity=0.266 Sum_probs=65.2
Q ss_pred ccccccCC-------CcchhhhhHHHHHHHHHHHHHHHhhCCch----hhhh--cc------cchhH--HHHHHHHHHHH
Q 029976 76 SDVFAFSG-------PAPERINGRLAMIGFVAALAVELSKGQDV----FAQL--SD------GGVAW--FLGTSVLLSVA 134 (184)
Q Consensus 76 ~d~~gF~g-------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~----~~q~--~~------~~~~~--~l~~~~li~~a 134 (184)
||++||+. +++|++|||+||||+++++++|+.++.+. .+|. .. ....| .+.++++++..
T Consensus 15 fDPlgl~~~~~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ig~~e~~ 94 (156)
T PF00504_consen 15 FDPLGLSSDPDFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGGIPVPAAGWAQILLFIGALEPW 94 (156)
T ss_dssp SSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTSSSSHSHHHHHHHHHHHHHHHH
T ss_pred CChhhcccchhHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhhhhhhhHHHHHHHHHHhHhhhh
Confidence 99999993 59999999999999999999999876432 2221 11 11222 22233344443
Q ss_pred hhcccccCC------CCCCCCC-----C--------CCChHHHHHhHHHHHHHHHHHHHHHH
Q 029976 135 SLVPLFKGV------SVESKSD-----G--------FMTSDAELWNGRFAMMGLVALAVTEF 177 (184)
Q Consensus 135 Sl~p~~~g~------~~e~~~~-----G--------~ft~~aEl~NGRLAMlGf~gll~qE~ 177 (184)
+........ ...+++. | .+++++||+|||||||||+|+++||.
T Consensus 95 ~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 95 RQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 332222110 1112221 1 14689999999999999999999983
No 2
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.83 E-value=4.1e-20 Score=155.77 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=71.6
Q ss_pred CcccccccCC---------CcchhhhhHHHHHHHHHHHHHHHhhCCchhh-------------hhcccc-hhHHHHHHHH
Q 029976 74 KFSDVFAFSG---------PAPERINGRLAMIGFVAALAVELSKGQDVFA-------------QLSDGG-VAWFLGTSVL 130 (184)
Q Consensus 74 ~~~d~~gF~g---------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~-------------q~~~~~-~~~~l~~~~l 130 (184)
..||++||+. +++|++|||+|||+++|.+++|..+..+... ++...+ ...+++++.+
T Consensus 57 ~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~~~~~~~g~~~Qi~~~ig~ 136 (209)
T PLN00089 57 KKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLKSGAMIQIFAWIGF 136 (209)
T ss_pred cCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHHHHhhcccccHHHHHHHHHH
Confidence 4599999984 2799999999999999999999876443211 111111 1122333344
Q ss_pred HHHHhhccc---ccCCCCCCCCCCC----C----------ChHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 029976 131 LSVASLVPL---FKGVSVESKSDGF----M----------TSDAELWNGRFAMMGLVALAVTEFVKGSTLV 184 (184)
Q Consensus 131 i~~aSl~p~---~~g~~~e~~~~G~----f----------t~~aEl~NGRLAMlGf~gll~qE~vTG~~l~ 184 (184)
++..-..+. .......++++|+ + .+.+||+||||||+|+.|+++||++||++++
T Consensus 137 ~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 137 VDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred HHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 443211121 0111223445441 1 2468999999999999999999999999874
No 3
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.83 E-value=3.9e-20 Score=159.47 Aligned_cols=109 Identities=25% Similarity=0.396 Sum_probs=69.9
Q ss_pred ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhh--hcccc-hhH-------H---HHHHHHHHHH
Q 029976 76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQ--LSDGG-VAW-------F---LGTSVLLSVA 134 (184)
Q Consensus 76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q--~~~~~-~~~-------~---l~~~~li~~a 134 (184)
||++|++. .++|++||||||+|++|++++|++++.+++.+ +...+ ..+ + ++.+..+++.
T Consensus 76 FDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~~ag~~~~~~~~~~l~~ie~~~mg~~E~~ 155 (250)
T PLN00101 76 FDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIR 155 (250)
T ss_pred CCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccccccchhhcccchHHHHHHHHHHHHHHHH
Confidence 89999974 27899999999999999999999998776521 11111 111 1 1111222222
Q ss_pred hhcc-----------cccCCCCCCC----CCCCCC----------hHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 029976 135 SLVP-----------LFKGVSVESK----SDGFMT----------SDAELWNGRFAMMGLVALAVTEFVKGSTLV 184 (184)
Q Consensus 135 Sl~p-----------~~~g~~~e~~----~~G~ft----------~~aEl~NGRLAMlGf~gll~qE~vTG~~l~ 184 (184)
.... .+.+...++. ++|.|+ +.||||||||||+||+|+++|+++||++.+
T Consensus 156 R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG~FDPLgl~~~~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi 230 (250)
T PLN00101 156 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTEEAKEKELANGRLAMLAFLGFVVQHNVTGKGPF 230 (250)
T ss_pred HhhcccCCCcccccccccccccCCccccCCCCccCccCCCccHHHHHHHHhhcchHHHHHhhHhheehccCCChH
Confidence 2111 1111111111 122232 589999999999999999999999999863
No 4
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.81 E-value=1.5e-19 Score=155.43 Aligned_cols=108 Identities=21% Similarity=0.226 Sum_probs=68.7
Q ss_pred ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc-cch-hHHHHHHHHHHHHhhccccc--CC
Q 029976 76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQLSD-GGV-AWFLGTSVLLSVASLVPLFK--GV 143 (184)
Q Consensus 76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~-~~~-~~~l~~~~li~~aSl~p~~~--g~ 143 (184)
||++||+. .++|++|||+||+|++|.+++|+++...+++.-.. .+. ...+..++++ +..+++.++ +.
T Consensus 58 FDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~P~w~~ag~~~~~~~~~~l~~iqil-l~g~~E~~r~~~~ 136 (246)
T PLN00100 58 FDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGLPKFWEAGAEKYGLDLQTLVLIQVV-VMAVLEAARYRGF 136 (246)
T ss_pred CCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcccchhhcchhhhccchhHHHHHHHH-HHHHHhhhccccc
Confidence 89999974 27899999999999999999999764443321110 000 0111122222 233333322 11
Q ss_pred -----CCCCCCCCC----C----ChHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 029976 144 -----SVESKSDGF----M----TSDAELWNGRFAMMGLVALAVTEFVKGSTLV 184 (184)
Q Consensus 144 -----~~e~~~~G~----f----t~~aEl~NGRLAMlGf~gll~qE~vTG~~l~ 184 (184)
..+++++++ | .+.|||+||||||+||+|+++|+++||++.+
T Consensus 137 ~~~g~~~~pg~~~FDPLGl~~~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPl 190 (246)
T PLN00100 137 MKTGESGVLSFFPFDPTGMDSPEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPL 190 (246)
T ss_pred ccccccCCCCCCCCCcccccHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChH
Confidence 111222331 1 3699999999999999999999999999863
No 5
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.80 E-value=1.3e-19 Score=151.97 Aligned_cols=106 Identities=25% Similarity=0.252 Sum_probs=67.3
Q ss_pred CcccccccCC----------CcchhhhhHHHHHHHHHHHHHHH-hhCCchh-----------------hhhcccchhHHH
Q 029976 74 KFSDVFAFSG----------PAPERINGRLAMIGFVAALAVEL-SKGQDVF-----------------AQLSDGGVAWFL 125 (184)
Q Consensus 74 ~~~d~~gF~g----------~~aE~~NGR~AMlG~v~~l~~E~-~tg~~~~-----------------~q~~~~~~~~~l 125 (184)
++||++||+. +++|++|||+||++++|.+++|. .+-.+.+ +++...++..++
T Consensus 45 g~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~a~~~vp~~g~~qi~ 124 (202)
T PLN00120 45 GFFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGLLQIL 124 (202)
T ss_pred CCCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccccccchhhhhhcchhHHHHHH
Confidence 6799999973 38999999999999999999996 2211110 111111222223
Q ss_pred HHHHHHHHHhhcccccCCCCCCC-------CCCCCC----------hHHHHHhHHHHHHHHHHHHHHHHhhCC
Q 029976 126 GTSVLLSVASLVPLFKGVSVESK-------SDGFMT----------SDAELWNGRFAMMGLVALAVTEFVKGS 181 (184)
Q Consensus 126 ~~~~li~~aSl~p~~~g~~~e~~-------~~G~ft----------~~aEl~NGRLAMlGf~gll~qE~vTG~ 181 (184)
++++++++.... ...+....++ ++| |+ +++||+||||||||+.|+++||+++|.
T Consensus 125 ~~ig~~E~~~~~-~~~~~~~~pGd~~~g~~d~g-fdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 125 AFIGFLELAVMK-DITGEGEFVGDFRNGYIDFG-WDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred HHHHHHHHHhhc-ccccCCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 334444443221 1111111222 333 33 478999999999999999999999996
No 6
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.80 E-value=1.7e-19 Score=156.44 Aligned_cols=108 Identities=23% Similarity=0.294 Sum_probs=68.9
Q ss_pred ccccccCC-------------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhc-----ccc------------hhHHH
Q 029976 76 SDVFAFSG-------------PAPERINGRLAMIGFVAALAVELSKGQDVFAQLS-----DGG------------VAWFL 125 (184)
Q Consensus 76 ~d~~gF~g-------------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~-----~~~------------~~~~l 125 (184)
||++|++. .++|++||||||||++|++++|++++.+++.+.. +.+ ....+
T Consensus 65 FDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l 144 (262)
T PLN00048 65 FDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTL 144 (262)
T ss_pred CCccccCCccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCccccccccccccccccccccccccccchhHH
Confidence 89999974 2579999999999999999999998766643211 101 01111
Q ss_pred HHHHHHHHHhhcccccCCC-------------------------CCCCCCCC----C---------ChHHHHHhHHHHHH
Q 029976 126 GTSVLLSVASLVPLFKGVS-------------------------VESKSDGF----M---------TSDAELWNGRFAMM 167 (184)
Q Consensus 126 ~~~~li~~aSl~p~~~g~~-------------------------~e~~~~G~----f---------t~~aEl~NGRLAMl 167 (184)
+.+ .+.+..+++..+... ..++++++ + .+.+||+||||||+
T Consensus 145 ~~~-~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~ 223 (262)
T PLN00048 145 FVL-EMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAML 223 (262)
T ss_pred HHH-HHHHhhheeeeccccccCCCcccccccccchhccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHH
Confidence 111 122333444322110 01111111 1 25899999999999
Q ss_pred HHHHHHHHHHhhCCCCC
Q 029976 168 GLVALAVTEFVKGSTLV 184 (184)
Q Consensus 168 Gf~gll~qE~vTG~~l~ 184 (184)
|++|+++|+++||++.+
T Consensus 224 A~~G~~~q~~~tg~gp~ 240 (262)
T PLN00048 224 AILGYFIQALVTGVGPF 240 (262)
T ss_pred HhhhHhhhhhhcCCCHH
Confidence 99999999999998853
No 7
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.79 E-value=4.7e-19 Score=154.07 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=67.8
Q ss_pred ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhh---hcccch-----hHHHHHHHHHHHHhhccc
Q 029976 76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQ---LSDGGV-----AWFLGTSVLLSVASLVPL 139 (184)
Q Consensus 76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q---~~~~~~-----~~~l~~~~li~~aSl~p~ 139 (184)
||++|++. .++|++||||||||++|++++|++++.+++.. ...+.. ...+..+.++ +..+++.
T Consensus 85 FDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q~~-lmG~~E~ 163 (267)
T PLN00098 85 FDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMV-LMGWAEG 163 (267)
T ss_pred cCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHHHHH-HHHHHHH
Confidence 89999974 38999999999999999999999887665431 111111 0011111221 1122221
Q ss_pred ------cc-C---C----------C---CCCCCCC--C--C----------ChHHHHHhHHHHHHHHHHHHHHHHhhCCC
Q 029976 140 ------FK-G---V----------S---VESKSDG--F--M----------TSDAELWNGRFAMMGLVALAVTEFVKGST 182 (184)
Q Consensus 140 ------~~-g---~----------~---~e~~~~G--~--f----------t~~aEl~NGRLAMlGf~gll~qE~vTG~~ 182 (184)
++ | . . ..+++.+ + + .+.+||+||||||++++|+++|+.+||++
T Consensus 164 ~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~g 243 (267)
T PLN00098 164 RRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEG 243 (267)
T ss_pred HHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCC
Confidence 00 0 0 0 0122211 1 1 15799999999999999999999999998
Q ss_pred CC
Q 029976 183 LV 184 (184)
Q Consensus 183 l~ 184 (184)
.+
T Consensus 244 Pl 245 (267)
T PLN00098 244 PI 245 (267)
T ss_pred hH
Confidence 64
No 8
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.79 E-value=5.8e-19 Score=151.76 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=67.5
Q ss_pred ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhh---hhcccch--------hHHHHH---HHHHHH
Q 029976 76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFA---QLSDGGV--------AWFLGT---SVLLSV 133 (184)
Q Consensus 76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~---q~~~~~~--------~~~l~~---~~li~~ 133 (184)
||++|++. .++|++||||||+|++|++++|++++.++.. +...+.. .++.+. +..++.
T Consensus 67 fDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p~W~~Ag~~~~~~~~~~~l~~i~~~lmg~~E~ 146 (244)
T PLN00097 67 FDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLPNWIDAAKWDGYWAGAGPLFFIQMAMFNWAEI 146 (244)
T ss_pred CCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCCccccCCcchhccccchhHHHHHHHHHHHHHH
Confidence 89999974 3899999999999999999999998765421 1111101 111111 112222
Q ss_pred Hhhccccc-C---C--------CCCCCC----CCCCC--------------hHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 029976 134 ASLVPLFK-G---V--------SVESKS----DGFMT--------------SDAELWNGRFAMMGLVALAVTEFVKGSTL 183 (184)
Q Consensus 134 aSl~p~~~-g---~--------~~e~~~----~G~ft--------------~~aEl~NGRLAMlGf~gll~qE~vTG~~l 183 (184)
....-+.+ | . ..++.+ .|.|+ +.+|||||||||++++|+++|+++||++.
T Consensus 147 ~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGP 226 (244)
T PLN00097 147 RRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGP 226 (244)
T ss_pred HHhhcccCCCccccccccccccCCcccccCCCCCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCH
Confidence 22111111 0 0 011111 12232 57999999999999999999999999986
Q ss_pred C
Q 029976 184 V 184 (184)
Q Consensus 184 ~ 184 (184)
+
T Consensus 227 l 227 (244)
T PLN00097 227 V 227 (244)
T ss_pred H
Confidence 3
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.78 E-value=1.3e-18 Score=149.56 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=65.4
Q ss_pred ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhh-----hccc-------chhH----HHHHHHHH
Q 029976 76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQ-----LSDG-------GVAW----FLGTSVLL 131 (184)
Q Consensus 76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q-----~~~~-------~~~~----~l~~~~li 131 (184)
||+++++. +++|++||||||||++|.+++|+++...+++- +..+ ++.| .+..++++
T Consensus 67 fDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl 146 (243)
T PLN00099 67 FDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFL 146 (243)
T ss_pred CCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhccCCcccccchhccCcchhhhccCccchhhHHHHHHHHHH
Confidence 89999974 37899999999999999999999754333211 0000 1111 11112222
Q ss_pred HHHhhcccccCC------CCCCCC----CCCC---------ChHHHHHhHHHHHHHHHHHHHHH-HhhCCCCC
Q 029976 132 SVASLVPLFKGV------SVESKS----DGFM---------TSDAELWNGRFAMMGLVALAVTE-FVKGSTLV 184 (184)
Q Consensus 132 ~~aSl~p~~~g~------~~e~~~----~G~f---------t~~aEl~NGRLAMlGf~gll~qE-~vTG~~l~ 184 (184)
+..++..++.. ...+++ .| | .+.+|||||||||+|++|+++|| .+||++.+
T Consensus 147 -~ig~~E~~r~~~~~~~~~~yPGd~FDPlG-l~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl 217 (243)
T PLN00099 147 -AIAFVEHQRSMEKDPEKKKYPGGAFDPLG-YSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 217 (243)
T ss_pred -HHHHHHHHhhccCCCCCCcCCCCcCCccc-ccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChH
Confidence 22223322110 111221 12 2 25789999999999999999999 57898763
No 10
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.75 E-value=1.6e-17 Score=143.56 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=34.8
Q ss_pred ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhh
Q 029976 76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQ 115 (184)
Q Consensus 76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q 115 (184)
||+++++. .++|++||||||+|+++++++|+++|..+++.
T Consensus 80 FDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~a 127 (255)
T PLN00170 80 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA 127 (255)
T ss_pred cCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhhC
Confidence 89999863 26899999999999999999999998877653
No 11
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.73 E-value=1.2e-17 Score=145.01 Aligned_cols=108 Identities=25% Similarity=0.343 Sum_probs=67.3
Q ss_pred ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchh-h---------hh-cccch------------h-H
Q 029976 76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVF-A---------QL-SDGGV------------A-W 123 (184)
Q Consensus 76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~-~---------q~-~~~~~------------~-~ 123 (184)
||++|++. .++|++||||||+|+++++++|++++.++. . |+ ..+++ . +
T Consensus 76 fDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~ 155 (262)
T PLN00025 76 WDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSIL 155 (262)
T ss_pred CCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchhhhHH
Confidence 89999974 278999999999999999999998754441 1 11 00110 0 0
Q ss_pred HHHHHHHHHHHhhccccc--C----CC---CCCCC----CCC--------CChHHHHHhHHHHHHHHHHHHHHHHhhCCC
Q 029976 124 FLGTSVLLSVASLVPLFK--G----VS---VESKS----DGF--------MTSDAELWNGRFAMMGLVALAVTEFVKGST 182 (184)
Q Consensus 124 ~l~~~~li~~aSl~p~~~--g----~~---~e~~~----~G~--------ft~~aEl~NGRLAMlGf~gll~qE~vTG~~ 182 (184)
.+..+.+ .+..++..++ + .. ..+++ .|. ..+.+||+||||||++++|+++|+++||++
T Consensus 156 a~~~~qv-~lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~G 234 (262)
T PLN00025 156 AIWACQV-VLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 234 (262)
T ss_pred HHHHHHH-HHHHHHHHhcccCCcccccccCcCCcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCC
Confidence 0111111 1233333322 1 11 11221 111 126889999999999999999999999998
Q ss_pred CC
Q 029976 183 LV 184 (184)
Q Consensus 183 l~ 184 (184)
.+
T Consensus 235 Pl 236 (262)
T PLN00025 235 PL 236 (262)
T ss_pred hH
Confidence 63
No 12
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.72 E-value=1.4e-17 Score=143.83 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=66.6
Q ss_pred ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchh-----hhhcc-------cchh-HH-HHHHHHHHH
Q 029976 76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVF-----AQLSD-------GGVA-WF-LGTSVLLSV 133 (184)
Q Consensus 76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~-----~q~~~-------~~~~-~~-l~~~~li~~ 133 (184)
||+|||+. .++|++|||+||+|++|.+++|+.+..++. ..... .+.. ++ ++.+++++.
T Consensus 68 FDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~p~w~~ag~~~~~~~~~~~~~~~q~~~mG~~E~ 147 (252)
T PLN00147 68 FDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVWYEAGAVKFEFASTRTLFVVQLLLMGFAET 147 (252)
T ss_pred CCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcCCcchhhcccchhccccchHHHHHHHHHHHHHHH
Confidence 89999974 378999999999999999999998765431 11110 0111 11 112222332
Q ss_pred Hhhcccc-----------cCC-----CC---CCCCCC--C--C---------ChHHHHHhHHHHHHHHHHHHHHHHhhCC
Q 029976 134 ASLVPLF-----------KGV-----SV---ESKSDG--F--M---------TSDAELWNGRFAMMGLVALAVTEFVKGS 181 (184)
Q Consensus 134 aSl~p~~-----------~g~-----~~---e~~~~G--~--f---------t~~aEl~NGRLAMlGf~gll~qE~vTG~ 181 (184)
....-+. .+. .. .+++.+ + + .+.+||+||||||+|++|+++||++||+
T Consensus 148 ~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~ 227 (252)
T PLN00147 148 KRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHT 227 (252)
T ss_pred HhhccccCCCccccccccccccccccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Confidence 2110000 000 01 122211 1 1 2578999999999999999999999998
Q ss_pred CCC
Q 029976 182 TLV 184 (184)
Q Consensus 182 ~l~ 184 (184)
+.+
T Consensus 228 Gp~ 230 (252)
T PLN00147 228 GPI 230 (252)
T ss_pred ChH
Confidence 863
No 13
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.71 E-value=1.4e-17 Score=146.04 Aligned_cols=109 Identities=27% Similarity=0.354 Sum_probs=68.4
Q ss_pred cccccccCC-CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhc----cc------chh---HHHHHHHHHHHHhhcccc
Q 029976 75 FSDVFAFSG-PAPERINGRLAMIGFVAALAVELSKGQDVFAQLS----DG------GVA---WFLGTSVLLSVASLVPLF 140 (184)
Q Consensus 75 ~~d~~gF~g-~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~----~~------~~~---~~l~~~~li~~aSl~p~~ 140 (184)
+.+.|+|.+ +++|++||||||||++|++++|+++|..+++.-. ++ +.. ..++.+.++ +..+++.+
T Consensus 124 ~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~G~~W~~aG~~~~~~g~~y~g~~~p~~~~~l~~iqvl-lmG~~E~~ 202 (286)
T PLN00187 124 YSEVFGLQRFRECELIHGRWAMLATLGALSVEALTGVTWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVL-VIGYIEFQ 202 (286)
T ss_pred chhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhccCCcccccccccccccccccccccchhHHHHHHHHHH-HHHHHHhh
Confidence 345566664 4899999999999999999999987654432100 00 111 112222222 34444554
Q ss_pred cCCCCCC----CCCC-CC--------------ChHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 029976 141 KGVSVES----KSDG-FM--------------TSDAELWNGRFAMMGLVALAVTEFVKGSTLV 184 (184)
Q Consensus 141 ~g~~~e~----~~~G-~f--------------t~~aEl~NGRLAMlGf~gll~qE~vTG~~l~ 184 (184)
+....+. .+.| .| .+.+||+||||||+|++|+++|+.+||++.+
T Consensus 203 R~~~~~~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi 265 (286)
T PLN00187 203 RNAELDPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 265 (286)
T ss_pred hccCCCCCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChH
Confidence 4322111 1111 12 2578999999999999999999999998753
No 14
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.70 E-value=6e-17 Score=143.87 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=31.3
Q ss_pred ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCc
Q 029976 76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQD 111 (184)
Q Consensus 76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~ 111 (184)
||++||+. .++|++|||+||||++|++++|+++..+
T Consensus 133 FDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g 176 (324)
T PLN00171 133 FDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFG 176 (324)
T ss_pred CCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCC
Confidence 89999974 3799999999999999999999976443
No 15
>PHA02337 putative high light inducible protein
Probab=99.30 E-value=2.9e-12 Score=80.06 Aligned_cols=31 Identities=39% Similarity=0.613 Sum_probs=29.5
Q ss_pred CChHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 029976 153 MTSDAELWNGRFAMMGLVALAVTEFVKGSTL 183 (184)
Q Consensus 153 ft~~aEl~NGRLAMlGf~gll~qE~vTG~~l 183 (184)
|++.+|++|||+||+||+..+..|+.||+++
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 6889999999999999999999999999976
No 16
>PHA02337 putative high light inducible protein
Probab=99.10 E-value=7.4e-11 Score=73.78 Aligned_cols=29 Identities=52% Similarity=0.737 Sum_probs=27.4
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHhhCCch
Q 029976 84 PAPERINGRLAMIGFVAALAVELSKGQDV 112 (184)
Q Consensus 84 ~~aE~~NGR~AMlG~v~~l~~E~~tg~~~ 112 (184)
+.+|++|||+||+||+.++..|+.||+++
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 67999999999999999999999999876
No 17
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=99.02 E-value=2.8e-10 Score=97.48 Aligned_cols=47 Identities=30% Similarity=0.425 Sum_probs=39.5
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhccc--chhHHHHHHH
Q 029976 83 GPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG--GVAWFLGTSV 129 (184)
Q Consensus 83 g~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~~--~~~~~l~~~~ 129 (184)
.+++|++|||+||+||+.++++|++||+++++|+++- ++.+|+.+++
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~~k~llfv~v~g 207 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFFCKTLLFVTVAG 207 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhhhHHHHHHHHHH
Confidence 4689999999999999999999999999999999884 4455544433
No 18
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=98.36 E-value=2.1e-07 Score=79.99 Aligned_cols=30 Identities=40% Similarity=0.596 Sum_probs=28.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 029976 155 SDAELWNGRFAMMGLVALAVTEFVKGSTLV 184 (184)
Q Consensus 155 ~~aEl~NGRLAMlGf~gll~qE~vTG~~l~ 184 (184)
+.+|++|||+|||||+..++.|++||++++
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll 189 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLV 189 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence 579999999999999999999999999874
No 19
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.31 E-value=3.8e-07 Score=75.68 Aligned_cols=31 Identities=32% Similarity=0.494 Sum_probs=28.4
Q ss_pred ChHHHHHhHHHHHHHHHHHHHHHHhh-CCCCC
Q 029976 154 TSDAELWNGRFAMMGLVALAVTEFVK-GSTLV 184 (184)
Q Consensus 154 t~~aEl~NGRLAMlGf~gll~qE~vT-G~~l~ 184 (184)
++..|+||||+||+||+.-++.|++| |++++
T Consensus 135 qK~nE~~NGRLAMLGF~~alitE~lTgGqGiL 166 (214)
T PLN00084 135 QKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL 166 (214)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence 46889999999999999999999999 88874
No 20
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.26 E-value=1.5e-06 Score=72.14 Aligned_cols=36 Identities=36% Similarity=0.507 Sum_probs=33.5
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHhh-CCchhhhhccc
Q 029976 84 PAPERINGRLAMIGFVAALAVELSK-GQDVFAQLSDG 119 (184)
Q Consensus 84 ~~aE~~NGR~AMlG~v~~l~~E~~t-g~~~~~q~~~~ 119 (184)
+.-|++|||+||+||+.+++.|+.| |++++.|+...
T Consensus 136 K~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~E 172 (214)
T PLN00084 136 KPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGE 172 (214)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccc
Confidence 4679999999999999999999999 99999999874
No 21
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=98.25 E-value=4.3e-07 Score=72.32 Aligned_cols=30 Identities=37% Similarity=0.419 Sum_probs=27.3
Q ss_pred CChHHHHHhHHHHHHHHHHHHHHHHhhCCC
Q 029976 153 MTSDAELWNGRFAMMGLVALAVTEFVKGST 182 (184)
Q Consensus 153 ft~~aEl~NGRLAMlGf~gll~qE~vTG~~ 182 (184)
|.+.+|++|||+||+|++|.+++|+.++.+
T Consensus 28 ~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~ 57 (156)
T PF00504_consen 28 WYREAELKHGRVAMLAFVGALVQEAGTGFP 57 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred HHHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence 568999999999999999999999998753
No 22
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=98.24 E-value=4.6e-07 Score=78.69 Aligned_cols=45 Identities=27% Similarity=0.409 Sum_probs=39.4
Q ss_pred CcccccccCC----CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976 74 KFSDVFAFSG----PAPERINGRLAMIGFVAALAVELSKGQDVFAQLSD 118 (184)
Q Consensus 74 ~~~d~~gF~g----~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~ 118 (184)
+.||+|||+. +..|++|||+||++++|.+++++.||++.++++.+
T Consensus 187 G~FDPLgl~~~~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~ 235 (250)
T PLN00101 187 GIFNPLNFAPTEEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQ 235 (250)
T ss_pred CccCccCCCccHHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHH
Confidence 4599999974 25899999999999999999999999999887654
No 23
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=98.20 E-value=9.4e-07 Score=76.86 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=38.0
Q ss_pred ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976 76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQLSD 118 (184)
Q Consensus 76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~ 118 (184)
+|++|+.. ...|++|||+||+|+.|.+++|+.||++.++++.+
T Consensus 185 FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~ 235 (252)
T PLN00147 185 FNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLT 235 (252)
T ss_pred CCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 99999974 25799999999999999999999999998877644
No 24
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=98.17 E-value=7.8e-07 Score=77.10 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=38.2
Q ss_pred ccccccCC---CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976 76 SDVFAFSG---PAPERINGRLAMIGFVAALAVELSKGQDVFAQLSD 118 (184)
Q Consensus 76 ~d~~gF~g---~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~ 118 (184)
||++||+. +..|++|||+||+|+.|.+++++.||++.++++.+
T Consensus 150 FDPLGl~~~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~ 195 (246)
T PLN00100 150 FDPTGMDSPEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKA 195 (246)
T ss_pred CCcccccHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence 89999874 37999999999999999999999999998877654
No 25
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=98.14 E-value=1.3e-06 Score=76.33 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=40.4
Q ss_pred CCCcccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976 72 STKFSDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQLSD 118 (184)
Q Consensus 72 ~~~~~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~ 118 (184)
+.+++|++|+.. ...|++|||+||+++++.+++|+.||++.++++.+
T Consensus 187 PG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~ 241 (262)
T PLN00025 187 PGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 241 (262)
T ss_pred CcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence 345699999974 26899999999999999999999999998887654
No 26
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=98.13 E-value=1.8e-06 Score=74.76 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=39.9
Q ss_pred CCcccccccCCC--------cchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976 73 TKFSDVFAFSGP--------APERINGRLAMIGFVAALAVELSKGQDVFAQLSD 118 (184)
Q Consensus 73 ~~~~d~~gF~g~--------~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~ 118 (184)
.+.||++|+... ..|++|||+||+++++.+++++.||++.++++.+
T Consensus 179 gg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~ 232 (244)
T PLN00097 179 KGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFS 232 (244)
T ss_pred CCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHH
Confidence 356999999752 5899999999999999999999999999887644
No 27
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=98.12 E-value=1.4e-06 Score=76.09 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=27.8
Q ss_pred CChHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 029976 153 MTSDAELWNGRFAMMGLVALAVTEFVKGSTL 183 (184)
Q Consensus 153 ft~~aEl~NGRLAMlGf~gll~qE~vTG~~l 183 (184)
+.+++||+|||+||+|++|++++|++++.++
T Consensus 84 ~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~ 114 (262)
T PLN00048 84 WLAYGEVINGRFAMLGAAGAIAPEILGKAGL 114 (262)
T ss_pred HHHHHHhhcchHHHHHHhhHHHHHHhccCCc
Confidence 4578999999999999999999999987665
No 28
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=98.10 E-value=1.6e-06 Score=75.96 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=27.8
Q ss_pred CChHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 029976 153 MTSDAELWNGRFAMMGLVALAVTEFVKGSTL 183 (184)
Q Consensus 153 ft~~aEl~NGRLAMlGf~gll~qE~vTG~~l 183 (184)
+.+++||+|||+||+|++|+++||++++.++
T Consensus 99 ~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~ 129 (267)
T PLN00098 99 WFAQAELMHSRWAMLAVAGILIPECLERLGF 129 (267)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHhcCCCc
Confidence 4589999999999999999999999987654
No 29
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=98.07 E-value=2.6e-06 Score=73.78 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=37.8
Q ss_pred CcccccccCC--------CcchhhhhHHHHHHHHHHHHHH-HhhCCchhhhhcc
Q 029976 74 KFSDVFAFSG--------PAPERINGRLAMIGFVAALAVE-LSKGQDVFAQLSD 118 (184)
Q Consensus 74 ~~~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E-~~tg~~~~~q~~~ 118 (184)
+.+|+|||+. ...|++|||+||+|++|.+++| ..+|++.++++.+
T Consensus 169 d~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~ 222 (243)
T PLN00099 169 GAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 222 (243)
T ss_pred CcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHH
Confidence 3599999974 2579999999999999999999 4689998887654
No 30
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=98.00 E-value=4.8e-06 Score=70.62 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=33.1
Q ss_pred ccccccCCC---------cchhhhhHHHHHHHHHHHHHHHhhCCchh
Q 029976 76 SDVFAFSGP---------APERINGRLAMIGFVAALAVELSKGQDVF 113 (184)
Q Consensus 76 ~d~~gF~g~---------~aE~~NGR~AMlG~v~~l~~E~~tg~~~~ 113 (184)
||++|+.+. ..|+.|||+||+|+.+.++.|+.||+++.
T Consensus 161 fdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 161 FDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred ccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 889988522 46999999999999999999999998875
No 31
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=97.97 E-value=5.3e-06 Score=73.36 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=38.2
Q ss_pred cccccccCCC--------cchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976 75 FSDVFAFSGP--------APERINGRLAMIGFVAALAVELSKGQDVFAQLSD 118 (184)
Q Consensus 75 ~~d~~gF~g~--------~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~ 118 (184)
+||++|++.. ..|++|||+||+++++.++++..||++.++++.+
T Consensus 219 ~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~ 270 (286)
T PLN00187 219 FFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWAT 270 (286)
T ss_pred cccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 5999999742 5799999999999999999999999988776544
No 32
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=97.90 E-value=6.8e-06 Score=71.67 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=27.9
Q ss_pred CChHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 029976 153 MTSDAELWNGRFAMMGLVALAVTEFVKGSTL 183 (184)
Q Consensus 153 ft~~aEl~NGRLAMlGf~gll~qE~vTG~~l 183 (184)
+.+++||+|||+||+|++|++++|+++|..+
T Consensus 94 ~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w 124 (255)
T PLN00170 94 WYREAELIHGRWAMAAVVGIFVGQAWSGIPW 124 (255)
T ss_pred HHHHHHhhccHHHHHHHHhhhhHHHccCCCh
Confidence 4579999999999999999999999998654
No 33
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=97.88 E-value=9.5e-06 Score=72.81 Aligned_cols=44 Identities=27% Similarity=0.372 Sum_probs=37.9
Q ss_pred cccccccCCC--------cchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976 75 FSDVFAFSGP--------APERINGRLAMIGFVAALAVELSKGQDVFAQLSD 118 (184)
Q Consensus 75 ~~d~~gF~g~--------~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~ 118 (184)
.+|++|++.. ..|++|||+||+|+.|.+++|..||++.++++.+
T Consensus 257 ~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~ 308 (324)
T PLN00171 257 LFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVD 308 (324)
T ss_pred CCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHH
Confidence 3999999742 4699999999999999999999999998877544
No 34
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=97.64 E-value=4.8e-05 Score=64.25 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=24.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhhCC
Q 029976 85 APERINGRLAMIGFVAALAVELSKGQ 110 (184)
Q Consensus 85 ~aE~~NGR~AMlG~v~~l~~E~~tg~ 110 (184)
..|+.|||+||+|+.+.++.|.++|.
T Consensus 170 ~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 170 AIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 57999999999999999999998774
No 35
>PLN02449 ferrochelatase
Probab=77.08 E-value=2 Score=40.88 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCC
Q 029976 164 FAMMGLVALAVTEFVKGSTLV 184 (184)
Q Consensus 164 LAMlGf~gll~qE~vTG~~l~ 184 (184)
+||+||+.++..|+++|++.+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999874
No 36
>PLN02449 ferrochelatase
Probab=60.73 E-value=6.8 Score=37.41 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhCCchhh
Q 029976 93 LAMIGFVAALAVELSKGQDVFA 114 (184)
Q Consensus 93 ~AMlG~v~~l~~E~~tg~~~~~ 114 (184)
+||+||+..++.|+.+|++.+.
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999999999998764
No 37
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=35.19 E-value=2.1e+02 Score=23.20 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=14.6
Q ss_pred cCCCCCcccccccceeeeeecccccc
Q 029976 33 SVKYLPGTLQRNVSLSVRCMAKNEQQ 58 (184)
Q Consensus 33 ~~~~~p~~~rr~~~~~vr~~a~~~~~ 58 (184)
+...+|+...|+ .|||..+.++.
T Consensus 31 ~~~glp~~~~r~---~v~cs~~~~~~ 53 (138)
T PF07123_consen 31 PVLGLPAMRARR---RVRCSAEKKPS 53 (138)
T ss_pred cccCCCcccccc---ceEEEeccCcc
Confidence 556778743333 68998885443
No 38
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=31.27 E-value=1.7e+02 Score=23.32 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=14.6
Q ss_pred cCCCCCcccc-cccceeeeeeccccc
Q 029976 33 SVKYLPGTLQ-RNVSLSVRCMAKNEQ 57 (184)
Q Consensus 33 ~~~~~p~~~r-r~~~~~vr~~a~~~~ 57 (184)
|-..+|. ++ |.. +|||..|.++
T Consensus 21 pvlGLP~-l~~~~~--~v~Cs~e~k~ 43 (128)
T PLN00077 21 PVLGLPQ-LRARSE--RVRCSYEKKA 43 (128)
T ss_pred cccCchh-hhccCC--ceEEecccCc
Confidence 4567888 54 433 6899988544
No 39
>PHA03159 hypothetical protein; Provisional
Probab=22.33 E-value=80 Score=25.63 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.1
Q ss_pred HHhHH-HHHHHHHHHHHHHH
Q 029976 159 LWNGR-FAMMGLVALAVTEF 177 (184)
Q Consensus 159 l~NGR-LAMlGf~gll~qE~ 177 (184)
.+=|| +||++|...++|-+
T Consensus 71 tNWGrvvAmLsFsa~vlQkI 90 (160)
T PHA03159 71 TNWGKVVAMISFSAAALQTI 90 (160)
T ss_pred ccHHHHHHHHhhHHHHHHHH
Confidence 34477 99999999998853
Done!