Query 029976
Match_columns 184
No_of_seqs 178 out of 681
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 10:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 99.8 1.8E-18 6.1E-23 146.5 10.8 110 74-184 44-206 (232)
2 2wsc_2 LHCA2, type II chloroph 99.8 9.8E-20 3.3E-24 157.3 3.0 109 76-184 87-247 (269)
3 2wsc_4 Chlorophyll A-B binding 99.7 1E-19 3.4E-24 155.8 0.1 109 75-184 75-229 (251)
4 3pl9_A Chlorophyll A-B binding 99.7 1.3E-18 4.5E-23 148.3 6.5 109 74-183 82-222 (243)
5 2wsc_3 LHCA3, type II chloroph 99.7 6.2E-20 2.1E-24 159.0 -3.7 30 155-184 225-254 (276)
6 2wsc_1 AT3G54890, LHCA1; photo 99.7 4.1E-18 1.4E-22 145.1 -0.4 108 76-184 68-218 (241)
7 3pl9_A Chlorophyll A-B binding 98.4 1.2E-07 4E-12 80.8 4.5 47 72-118 174-228 (243)
8 2bhw_A Chlorophyll A-B binding 98.4 1.4E-07 4.6E-12 79.8 4.6 46 73-118 158-211 (232)
9 2wsc_3 LHCA3, type II chloroph 98.2 2.5E-07 8.7E-12 80.0 1.1 44 75-118 208-259 (276)
10 2wsc_2 LHCA2, type II chloroph 98.2 2.2E-07 7.7E-12 80.1 0.4 44 74-117 198-251 (269)
11 2wsc_4 Chlorophyll A-B binding 98.2 3E-07 1E-11 78.6 0.6 31 153-183 90-120 (251)
12 2wsc_1 AT3G54890, LHCA1; photo 98.1 7.2E-07 2.5E-11 75.9 1.8 46 73-118 169-223 (241)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.76 E-value=1.8e-18 Score=146.55 Aligned_cols=110 Identities=25% Similarity=0.315 Sum_probs=66.6
Q ss_pred CcccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCch------hh----hh-ccc-------c------h
Q 029976 74 KFSDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDV------FA----QL-SDG-------G------V 121 (184)
Q Consensus 74 ~~~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~------~~----q~-~~~-------~------~ 121 (184)
..||++||+. +++|++|||+||||++|.+++|+++..++ +. +. .+. + .
T Consensus 44 ~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~ 123 (232)
T 2bhw_A 44 YGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQS 123 (232)
T ss_dssp CSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECC
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCCcCCcccccccccchhccccchhcccCcchhhHHH
Confidence 3599999984 38999999999999999999999763221 11 11 000 0 0
Q ss_pred hHHHHHHHHHHHHhhcccc--cC----CCCCC-CCCCCC--------------ChHHHHHhHHHHHHHHHHHHHHHHhhC
Q 029976 122 AWFLGTSVLLSVASLVPLF--KG----VSVES-KSDGFM--------------TSDAELWNGRFAMMGLVALAVTEFVKG 180 (184)
Q Consensus 122 ~~~l~~~~li~~aSl~p~~--~g----~~~e~-~~~G~f--------------t~~aEl~NGRLAMlGf~gll~qE~vTG 180 (184)
..++....++ +...+..+ ++ ...++ .+.+.| .+.+|++||||||+||+|+++||++||
T Consensus 124 i~~~~~~q~~-~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg 202 (232)
T 2bhw_A 124 ILAIWATQVI-LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 202 (232)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HHHHHHHHhhccCcccccccccCCCcccccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcC
Confidence 0111111221 11222211 11 11111 011111 257899999999999999999999999
Q ss_pred CCCC
Q 029976 181 STLV 184 (184)
Q Consensus 181 ~~l~ 184 (184)
++++
T Consensus 203 ~g~~ 206 (232)
T 2bhw_A 203 KGPL 206 (232)
T ss_dssp SCSH
T ss_pred CChH
Confidence 9863
No 2
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.76 E-value=9.8e-20 Score=157.28 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=62.9
Q ss_pred ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhh-----------hcccc-hhHH-HHHHHHHHHH
Q 029976 76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQ-----------LSDGG-VAWF-LGTSVLLSVA 134 (184)
Q Consensus 76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q-----------~~~~~-~~~~-l~~~~li~~a 134 (184)
||++||+. .++|++|||+||||+++.+++|++++.++... ..+.+ +.++ ++.+.+++..
T Consensus 87 fDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~~ 166 (269)
T 2wsc_2 87 FDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGR 166 (269)
T ss_dssp -------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTTSSSSCCCTTSHHHHHTTHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccccchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 89999852 28999999999999999999999886554321 00111 1111 1122334433
Q ss_pred hhc-----------ccccCCC------CCCCCC-----CC---------CChHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 029976 135 SLV-----------PLFKGVS------VESKSD-----GF---------MTSDAELWNGRFAMMGLVALAVTEFVKGSTL 183 (184)
Q Consensus 135 Sl~-----------p~~~g~~------~e~~~~-----G~---------ft~~aEl~NGRLAMlGf~gll~qE~vTG~~l 183 (184)
... |.|.+.. ..++++ |. ..+.+||+|||||||||+|+++||++||+++
T Consensus 167 r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~ 246 (269)
T 2wsc_2 167 RWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 246 (269)
T ss_dssp HHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCS
T ss_pred HHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCCh
Confidence 221 1121110 011111 10 2368999999999999999999999999986
Q ss_pred C
Q 029976 184 V 184 (184)
Q Consensus 184 ~ 184 (184)
+
T Consensus 247 l 247 (269)
T 2wsc_2 247 I 247 (269)
T ss_dssp S
T ss_pred H
Confidence 4
No 3
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.74 E-value=1e-19 Score=155.83 Aligned_cols=109 Identities=21% Similarity=0.339 Sum_probs=63.6
Q ss_pred cccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhh---h--------cccc-hhHH-HHHHHHHHH
Q 029976 75 FSDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQ---L--------SDGG-VAWF-LGTSVLLSV 133 (184)
Q Consensus 75 ~~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q---~--------~~~~-~~~~-l~~~~li~~ 133 (184)
.||++||+. .++|++|||+||+|+++.+++|++++.++... . ...+ +.|+ ++.+++++.
T Consensus 75 gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~ 154 (251)
T 2wsc_4 75 GFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEI 154 (251)
T ss_dssp ------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSCCCCCSCCCSSSCSSCSSCTTTTHHHHHHTTTH
T ss_pred CCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccCCccccccchHhhhccchHHHHHHHHHHHHHHH
Confidence 489999963 27999999999999999999999988766531 1 1111 1111 111222222
Q ss_pred Hhhc-----------ccccCCCCCC----CCCCCC----------ChHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 029976 134 ASLV-----------PLFKGVSVES----KSDGFM----------TSDAELWNGRFAMMGLVALAVTEFVKGSTLV 184 (184)
Q Consensus 134 aSl~-----------p~~~g~~~e~----~~~G~f----------t~~aEl~NGRLAMlGf~gll~qE~vTG~~l~ 184 (184)
.... |.+.+...+. .+++.| .+.+||||||| |+||+|+++||++||++.+
T Consensus 155 ~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg~FDPLgl~~~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl 229 (251)
T 2wsc_4 155 RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPF 229 (251)
T ss_dssp HHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCCTTCCCCCCSSSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCC
T ss_pred HHhhcccCCCcccccccccccccccccccCCCCccCccchhHHHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHH
Confidence 2111 1122111010 011112 26899999999 9999999999999999864
No 4
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.74 E-value=1.3e-18 Score=148.26 Aligned_cols=109 Identities=27% Similarity=0.280 Sum_probs=63.2
Q ss_pred CcccccccCC-CcchhhhhHHHHHHHHHHHHHHHhhCCchhh---h-----hccc----chhH-HHHHHHHHHHHhhccc
Q 029976 74 KFSDVFAFSG-PAPERINGRLAMIGFVAALAVELSKGQDVFA---Q-----LSDG----GVAW-FLGTSVLLSVASLVPL 139 (184)
Q Consensus 74 ~~~d~~gF~g-~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~---q-----~~~~----~~~~-~l~~~~li~~aSl~p~ 139 (184)
.+.|.++|.+ +++|++|||+||||++|++++|+++|..+++ + .... +..+ .+..+++ .+...+..
T Consensus 82 ~~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv-~lmG~~E~ 160 (243)
T 3pl9_A 82 PYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEV-LVIGYIEF 160 (243)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHH-HHHHHHHH
T ss_pred cccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcCcccccccccccccccccccCccchhhHHHHHHHH-HHHHHHHH
Confidence 3567777764 5999999999999999999999987654431 1 1110 1110 1111121 22222222
Q ss_pred cc--CCCCC----CC----CCCC--------CChHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 029976 140 FK--GVSVE----SK----SDGF--------MTSDAELWNGRFAMMGLVALAVTEFVKGSTL 183 (184)
Q Consensus 140 ~~--g~~~e----~~----~~G~--------ft~~aEl~NGRLAMlGf~gll~qE~vTG~~l 183 (184)
++ +...+ ++ +.|. ..+.+|++|||+||+||+|+++||++||++.
T Consensus 161 ~R~~~~~~~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gp 222 (243)
T 3pl9_A 161 QRNAELDTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGP 222 (243)
T ss_dssp HHHSCCCTTTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HhhcccCCccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCh
Confidence 21 11111 11 1111 1258999999999999999999999999875
No 5
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.73 E-value=6.2e-20 Score=159.03 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=28.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 029976 155 SDAELWNGRFAMMGLVALAVTEFVKGSTLV 184 (184)
Q Consensus 155 ~~aEl~NGRLAMlGf~gll~qE~vTG~~l~ 184 (184)
+.+||+||||||+||+|+++||++||++++
T Consensus 225 r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~ 254 (276)
T 2wsc_3 225 KLKEVKNGRLAMLAILGYFVQALVTGVGPY 254 (276)
T ss_dssp CCSHHHHHHHHHHHHHHHHSSCCCCSSCCS
T ss_pred HHhhhcccchHHHHHHHHHHHHHhcCCChH
Confidence 578999999999999999999999999864
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.67 E-value=4.1e-18 Score=145.14 Aligned_cols=108 Identities=21% Similarity=0.264 Sum_probs=63.2
Q ss_pred ccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhh-----hhccc-------chhH----HHHHHHHH
Q 029976 76 SDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFA-----QLSDG-------GVAW----FLGTSVLL 131 (184)
Q Consensus 76 ~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~-----q~~~~-------~~~~----~l~~~~li 131 (184)
||++||+. +++|++|||+||+|++|.+++|+++...+.+ .+..+ +..| .+..++++
T Consensus 68 fDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l 147 (241)
T 2wsc_1 68 FDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFL 147 (241)
T ss_dssp CSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHH
T ss_pred cCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchhccCCcchhhhcCcchHHHHHHHHHHHHH
Confidence 89999973 2799999999999999999999865332221 01100 1111 11111111
Q ss_pred HHHhhccccc--CCCC----CCC----CCCC--------CChHHHHHhHHHHHHHHHHHHHHH-HhhCCCCC
Q 029976 132 SVASLVPLFK--GVSV----ESK----SDGF--------MTSDAELWNGRFAMMGLVALAVTE-FVKGSTLV 184 (184)
Q Consensus 132 ~~aSl~p~~~--g~~~----e~~----~~G~--------ft~~aEl~NGRLAMlGf~gll~qE-~vTG~~l~ 184 (184)
...++..++ +... .++ +.|. ..+.+|||||||||+||+|+++|| .+||++.+
T Consensus 148 -~ig~~E~~r~~~~~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl 218 (241)
T 2wsc_1 148 -AIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 218 (241)
T ss_dssp -HTHHHHHHHTSCCSSCCSSSCSCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCC
T ss_pred -HHHHHHHHHHhccCCCCCCCCCCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchH
Confidence 112222211 1000 010 0110 136899999999999999999999 58998764
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=98.45 E-value=1.2e-07 Score=80.85 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=40.8
Q ss_pred CCCcccccccCCC--------cchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976 72 STKFSDVFAFSGP--------APERINGRLAMIGFVAALAVELSKGQDVFAQLSD 118 (184)
Q Consensus 72 ~~~~~d~~gF~g~--------~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~ 118 (184)
+.+++|++|++.. .+|++|||+||+|+++.+++|+.||++.++|+.+
T Consensus 174 PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~ 228 (243)
T 3pl9_A 174 PGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVT 228 (243)
T ss_dssp CCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3457999999742 6899999999999999999999999999888654
No 8
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=98.44 E-value=1.4e-07 Score=79.80 Aligned_cols=46 Identities=24% Similarity=0.345 Sum_probs=39.9
Q ss_pred CCcccccccCCC--------cchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976 73 TKFSDVFAFSGP--------APERINGRLAMIGFVAALAVELSKGQDVFAQLSD 118 (184)
Q Consensus 73 ~~~~d~~gF~g~--------~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~ 118 (184)
.+++|++||... .+|++|||+||+|+++.++.|..||++.++|+.+
T Consensus 158 g~~fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~ 211 (232)
T 2bhw_A 158 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 211 (232)
T ss_dssp CTTSCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHH
T ss_pred CcccccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 457999999742 6899999999999999999999999998887643
No 9
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=98.21 E-value=2.5e-07 Score=80.05 Aligned_cols=44 Identities=30% Similarity=0.456 Sum_probs=37.1
Q ss_pred cccccccCC--------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhcc
Q 029976 75 FSDVFAFSG--------PAPERINGRLAMIGFVAALAVELSKGQDVFAQLSD 118 (184)
Q Consensus 75 ~~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~~ 118 (184)
++|++||+. +.+|++|||+||+|+++.+++|+.||++.++|+.+
T Consensus 208 ~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~ 259 (276)
T 2wsc_3 208 FFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLD 259 (276)
T ss_dssp SCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC---
T ss_pred cccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 389999973 37899999999999999999999999999887654
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=98.19 E-value=2.2e-07 Score=80.12 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=38.6
Q ss_pred Cc-ccccccCC---------CcchhhhhHHHHHHHHHHHHHHHhhCCchhhhhc
Q 029976 74 KF-SDVFAFSG---------PAPERINGRLAMIGFVAALAVELSKGQDVFAQLS 117 (184)
Q Consensus 74 ~~-~d~~gF~g---------~~aE~~NGR~AMlG~v~~l~~E~~tg~~~~~q~~ 117 (184)
++ +|++||.. ..+|++|||+||+||++.++.|.+||++.++++.
T Consensus 198 ~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~ 251 (269)
T 2wsc_2 198 GLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251 (269)
T ss_dssp CSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred CcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 44 89999862 3689999999999999999999999999988766
No 11
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=98.16 E-value=3e-07 Score=78.58 Aligned_cols=31 Identities=32% Similarity=0.528 Sum_probs=29.0
Q ss_pred CChHHHHHhHHHHHHHHHHHHHHHHhhCCCC
Q 029976 153 MTSDAELWNGRFAMMGLVALAVTEFVKGSTL 183 (184)
Q Consensus 153 ft~~aEl~NGRLAMlGf~gll~qE~vTG~~l 183 (184)
+.+.+|++|||+||+|++|++++|++++.++
T Consensus 90 ~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~ 120 (251)
T 2wsc_4 90 WFVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120 (251)
T ss_dssp TTHHHHHHHTHHHHHHHTTSSTTSSSCCSCS
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCc
Confidence 6799999999999999999999999998765
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=98.11 E-value=7.2e-07 Score=75.85 Aligned_cols=46 Identities=26% Similarity=0.337 Sum_probs=39.0
Q ss_pred CCcccccccCC--------CcchhhhhHHHHHHHHHHHHHH-HhhCCchhhhhcc
Q 029976 73 TKFSDVFAFSG--------PAPERINGRLAMIGFVAALAVE-LSKGQDVFAQLSD 118 (184)
Q Consensus 73 ~~~~d~~gF~g--------~~aE~~NGR~AMlG~v~~l~~E-~~tg~~~~~q~~~ 118 (184)
.+.+|++||+. +..|++|||+||+|+++.++.| ..+|++.++++..
T Consensus 169 gg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~ 223 (241)
T 2wsc_1 169 GGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 223 (241)
T ss_dssp SCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSC
T ss_pred CCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHH
Confidence 35799999873 3689999999999999999999 5799998887654
Done!