BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029978
         (184 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
           (Arl10b)
          Length = 193

 Score =  263 bits (672), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 117/174 (67%), Positives = 148/174 (85%)

Query: 8   LNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIK 67
           L+W ++LF+K+EMEL+L+GLQ +GKT+ VNVIA+G ++EDMIPTVGFNMRK+TKGNVTIK
Sbjct: 20  LDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIK 79

Query: 68  LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 127
           LWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + +  S++ELH+LL KP L GIP+LVL
Sbjct: 80  LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL 139

Query: 128 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181
           GNK D P AL +++L+E+M L +I DRE+CCY ISCK   NID  + WL++HSK
Sbjct: 140 GNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 193


>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
          Length = 186

 Score =  255 bits (651), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 141/167 (84%)

Query: 17  KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76
           K+EMEL+L+GLQ +GKT+ VNVIA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQPR
Sbjct: 20  KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPR 79

Query: 77  FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
           FRSMWERYCR V+AIVY++DAAD + +  SR+ELH+LL KP L GIP+LVLGNK D P A
Sbjct: 80  FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNA 139

Query: 137 LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
           L ++ L+E+M L +I DRE+CCY ISCK   NID  + WL++HSKS+
Sbjct: 140 LDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186


>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
          Length = 188

 Score =  254 bits (649), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 142/167 (85%)

Query: 17  KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76
           K+EMEL+L+GLQ +GKT+ VNVIA+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+GGQPR
Sbjct: 20  KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPR 79

Query: 77  FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
           FRSMWERYCR VSAIVY+VDAAD + +  S++ELH+LL KP L GIP+LVLGNK D P A
Sbjct: 80  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139

Query: 137 LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
           L +++L+E+M L +I DRE+CCY ISCK   NID  + WL++HSKS+
Sbjct: 140 LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186


>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
           Histolytica Hm- 1:imss Bound To Mg-Gdp
 pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
           Histolytica Hm- 1:imss Bound To Mg-Gdp
          Length = 178

 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 100/173 (57%), Gaps = 1/173 (0%)

Query: 9   NWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKL 68
           +WL  L  K+EM + ++GL  AGKTS++  +  G      IPT+GFN+  V   N++  +
Sbjct: 7   SWLSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTV 65

Query: 69  WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
           WD+GGQ + R +W  Y +   AI++VVD+ D D +  +R EL  +L++  +    LLV  
Sbjct: 66  WDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFA 125

Query: 129 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181
           NK D P+A+S  ++ E++GL++I +R+  C      N   +   +DWL  + K
Sbjct: 126 NKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNLK 178


>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
           Like Protein 1 (Arl1) And Grip Domain Of Golgin245
           Complex
 pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
           Like Protein 1 (Arl1) And Grip Domain Of Golgin245
           Complex
 pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
           Like Protein 1 (Arl1) And Grip Domain Of Golgin245
           Complex
 pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
           Like Protein 1 (Arl1) And Grip Domain Of Golgin245
           Complex
          Length = 165

 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 1/166 (0%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
           +EM + ++GL  AGKT+++  +  G      IPT+GFN+  VT  N+  ++WDLGGQ   
Sbjct: 1   REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSI 59

Query: 78  RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137
           R  W  Y     A++YVVD+ D D + +S+SEL  +L +  L    L+V  NK D  +A+
Sbjct: 60  RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 119

Query: 138 SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
           +  ++   +GL ++ DR+   +  S    T +D  ++WLV+  KS+
Sbjct: 120 TPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165


>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
           Disturbance By Agrobacterium Protein 6b
 pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
           Disturbance By Agrobacterium Protein 6b
          Length = 184

 Score =  113 bits (283), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 3/184 (1%)

Query: 1   MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
           MGL  +F      LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V 
Sbjct: 4   MGL--SFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE 60

Query: 61  KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
             N++  +WD+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +L++  L 
Sbjct: 61  YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 120

Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
              LLV  NK D P A++  ++ +++GL S+  R          +   +   +DWL  + 
Sbjct: 121 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 180

Query: 181 KSKS 184
            SK+
Sbjct: 181 ASKA 184


>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
           Human Arf6-Gtp
 pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
           Its Human Protein Activator, Arf6
 pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
           Gtpgammas
 pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
           Gtpgammas
          Length = 175

 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 1/172 (0%)

Query: 11  LRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
           L  +F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD
Sbjct: 5   LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWD 63

Query: 71  LGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
           +GGQ + R +W  Y      +++VVD AD D +  +R ELH +++   +    +L+  NK
Sbjct: 64  VGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 123

Query: 131 IDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182
            D P+A+   ++ E++GL  I DR          +   +   + WL  + KS
Sbjct: 124 QDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175


>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
          Length = 174

 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 1/172 (0%)

Query: 11  LRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
           L  +F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD
Sbjct: 4   LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWD 62

Query: 71  LGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
           +GGQ + R +W  Y      +++VVD AD D +  +R ELH +++   +    +L+  NK
Sbjct: 63  VGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 122

Query: 131 IDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182
            D P+A+   ++ E++GL  I DR          +   +   + WL  + KS
Sbjct: 123 QDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 174


>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
           Complex With Arl1
 pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
           Complex With Arl1
          Length = 166

 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 1/165 (0%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
           +EM + ++GL  AGKT+++  +  G      IPT+GFN+  VT  N+  ++WDLGG    
Sbjct: 3   REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 61

Query: 78  RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137
           R  W  Y     A++YVVD+ D D + +S+SEL  +L +  L    L+V  NK D  +A+
Sbjct: 62  RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 121

Query: 138 SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182
           +  ++   +GL ++ DR+   +  S    T +D  ++WLV+  KS
Sbjct: 122 TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 166


>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
           (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
          Length = 181

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 101/184 (54%), Gaps = 3/184 (1%)

Query: 1   MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
           MGL+ + L    +LF  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  V 
Sbjct: 1   MGLYASKL--FSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVETVQ 57

Query: 61  KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
             N++  +WD+GGQ R RS+W  Y R    +++V+D+ D   +  +R  +  +L++  L 
Sbjct: 58  YKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELR 117

Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
               LV  NK D PEA+S  ++ E++GL SI +R          +   +   ++WL  + 
Sbjct: 118 NAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNL 177

Query: 181 KSKS 184
           K++S
Sbjct: 178 KNQS 181


>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
           Length Non-Myristoylated
 pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
           Length Non-Myristoylated
          Length = 180

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 96/177 (54%), Gaps = 1/177 (0%)

Query: 7   FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTI 66
           F N  + LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++ 
Sbjct: 4   FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISF 62

Query: 67  KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 126
            +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV
Sbjct: 63  TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 122

Query: 127 LGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
             NK D P A++  ++ +++GL S+  R          +   +   +DWL    +++
Sbjct: 123 FANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 179


>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
           Trans State
 pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
           Trans State Soaked With Calcium
          Length = 497

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 1/166 (0%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
           +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + 
Sbjct: 321 KEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 379

Query: 78  RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137
           R +W  Y      +++VVD AD D +  +R ELH +++   +    +L+  NK D P+A+
Sbjct: 380 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 439

Query: 138 SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
              ++ E++GL  I DR          +   +   + WL  + KSK
Sbjct: 440 KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485


>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
           With Gdp, Dimeric Crystal Form
 pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
           With Gdp, Dimeric Crystal Form
 pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
           Sec7 Domain
 pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
           Sec7 Domain
 pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
           With Gdp, Monomeric Crystal Form
          Length = 181

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 96/177 (54%), Gaps = 1/177 (0%)

Query: 7   FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTI 66
           F N  + LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++ 
Sbjct: 5   FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISF 63

Query: 67  KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 126
            +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV
Sbjct: 64  TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 123

Query: 127 LGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
             NK D P A++  ++ +++GL S+  R          +   +   +DWL    +++
Sbjct: 124 FANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180


>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
          Length = 175

 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 1/172 (0%)

Query: 11  LRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
           L  +F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD
Sbjct: 5   LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWD 63

Query: 71  LGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
           +GG  + R +W  Y      +++VVD AD D +  +R ELH +++   +    +L+  NK
Sbjct: 64  VGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 123

Query: 131 IDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182
            D P+A+   ++ E++GL  I DR          +   +   + WL  + KS
Sbjct: 124 QDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175


>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
           Gdp- Bound
          Length = 181

 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 1/172 (0%)

Query: 13  SLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72
           +LF  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+G
Sbjct: 11  NLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVETVQYKNISFTVWDVG 69

Query: 73  GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           GQ R RS+W  Y R    +++VVD+ D   +  +R  +  +L++  L     LV  NK D
Sbjct: 70  GQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQD 129

Query: 133 KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 184
            PEA+S  ++ E++GL SI +R          +   +   ++WL    K+ +
Sbjct: 130 LPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKNST 181


>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
 pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
          Length = 162

 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 1/163 (0%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
           M + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R 
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP 59

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
           +W  Y      +++VVD AD D +  +R ELH +++   +    +L+  NK D P+A+  
Sbjct: 60  LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 119

Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182
            ++ E++GL  I DR          +   +   + WL  + KS
Sbjct: 120 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 162


>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
           Adp-Ribosylation Factor 1
          Length = 181

 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 3/179 (1%)

Query: 1   MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
           MGL+ + L     LF K+++ + ++GL  AGKT+++  +  G      IPT+GFN+  V 
Sbjct: 1   MGLYVSRL--FNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVT-TIPTIGFNVETVE 57

Query: 61  KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 120
             N++  +WD+GGQ + R +W  Y      +++VVD+ D + +  +R ELH ++++  L 
Sbjct: 58  FRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELK 117

Query: 121 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
              +LV  NK D P A+S  ++ E++ L +I +R              +    DWL  H
Sbjct: 118 DAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTH 176


>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
 pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
          Length = 329

 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 94/172 (54%), Gaps = 1/172 (0%)

Query: 12  RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDL 71
           R LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+
Sbjct: 158 RGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDV 216

Query: 72  GGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
           GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK 
Sbjct: 217 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 276

Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
           D P A++  ++ +++GL S+  R          +   +   +DWL    +++
Sbjct: 277 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328


>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
 pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
          Length = 160

 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 79/135 (58%), Gaps = 1/135 (0%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
           M + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R 
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP 59

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
           +W  Y      +++VVD AD D +  +R ELH +++   +    +L+  NK D P+A+  
Sbjct: 60  LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 119

Query: 140 EDLMEQMGLKSITDR 154
            ++ E++GL  I DR
Sbjct: 120 HEIQEKLGLTRIRDR 134


>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
           Specific Effector, Jip4
 pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
           Specific Effector, Jip4
 pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
           Specific Effector, Jip4
          Length = 165

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 1/164 (0%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
           EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GG  + R
Sbjct: 3   EMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIR 61

Query: 79  SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138
            +W  Y      +++VVD AD D +  +R ELH +++   +    +L+  NK D P+A+ 
Sbjct: 62  PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 121

Query: 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182
             ++ E++GL  I DR          +   +   + WL  + KS
Sbjct: 122 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 165


>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
           Protein 1) Complex
 pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
           Protein 1) Complex
 pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
           Protein 1) Complex
 pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
           Protein 1) Complex
          Length = 172

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 1/164 (0%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
           EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GG  + R
Sbjct: 2   EMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIR 60

Query: 79  SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138
            +W  Y      +++VVD AD D +  +R ELH +++   +    +L+  NK D P+A+ 
Sbjct: 61  PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 120

Query: 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182
             ++ E++GL  I DR          +   +   + WL  + KS
Sbjct: 121 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 164


>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
 pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
          Length = 198

 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 94/151 (62%), Gaps = 2/151 (1%)

Query: 3   LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK 61
           ++  F + L+ L  +K+  +L  +GL NAGKT+L++++      +  +PT+     ++T 
Sbjct: 8   IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTI 66

Query: 62  GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNG 121
             +T   +DLGG  + R +W+ Y  A++ IV++VD AD++ L  S+ EL  L++  ++  
Sbjct: 67  AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIAN 126

Query: 122 IPLLVLGNKIDKPEALSKEDLMEQMGLKSIT 152
           +P+L+LGNKID+PEA+S+E L E  GL   T
Sbjct: 127 VPILILGNKIDRPEAISEERLREMFGLYGQT 157


>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
           Conformation
          Length = 181

 Score =  103 bits (256), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 83/142 (58%), Gaps = 1/142 (0%)

Query: 13  SLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72
           +LF  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+G
Sbjct: 11  NLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVECVQYCNISFTVWDVG 69

Query: 73  GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           GQ R RS+W  Y      +++VVD+ D   +  +R  +  +L++  L     LV  NK D
Sbjct: 70  GQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQD 129

Query: 133 KPEALSKEDLMEQMGLKSITDR 154
            PEA+S  ++ E++GL SI +R
Sbjct: 130 LPEAMSAAEITEKLGLHSIRNR 151


>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
           Complex
 pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
           Complex
          Length = 164

 Score =  103 bits (256), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 1/165 (0%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
           M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ R RS
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVETVQYKNISFTVWDVGGQDRIRS 59

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
           +W  Y R    +++VVD+ D   +  +R  +  +L++  L     LV  NK D PEA+S 
Sbjct: 60  LWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSA 119

Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 184
            ++ E++GL SI +R          +   +   ++WL    K+ +
Sbjct: 120 AEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKNST 164


>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
           Crystal Structure At Low Mg(2+)
 pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
           Crystal Structure At Low Mg(2+)
          Length = 195

 Score =  103 bits (256), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 87/138 (63%), Gaps = 1/138 (0%)

Query: 15  FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74
            +K+  +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG 
Sbjct: 18  LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGH 76

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
            + R +W+ Y  A++ IV++VD AD++ L  S+ EL  L++  ++  +P+L+LGNKID+P
Sbjct: 77  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 136

Query: 135 EALSKEDLMEQMGLKSIT 152
           EA+S+E L E  GL   T
Sbjct: 137 EAISEERLREMFGLYGQT 154


>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
 pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
          Length = 192

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 1/167 (0%)

Query: 17  KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76
           ++E+ L ++GL NAGKT+++     G   + + PT+GFN++ +      + +WD+GGQ  
Sbjct: 14  ERELRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKS 72

Query: 77  FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
            RS W  Y  +   +++VVD+AD   +   + EL  LL +  L G  LL+  NK D P A
Sbjct: 73  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 132

Query: 137 LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
           LS   + E + L SI     C    S     N+   IDWL+    S+
Sbjct: 133 LSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179


>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
           Cerevisiae
 pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
           Cerevisiae
          Length = 183

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 6/174 (3%)

Query: 9   NWLRSLFFK-----QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN 63
           N   S+F K     +E+ + ++GL  AGKT+++  +  G       PT+GFN+  ++  N
Sbjct: 3   NIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVETLSYKN 61

Query: 64  VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 123
           + + +WDLGGQ   R  W  Y    +A+++VVD+ D D +  +  ELH +L +  L    
Sbjct: 62  LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 121

Query: 124 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177
           LLV  NK D+P ALS  ++ +++ L  + DR       S      I   +DWL+
Sbjct: 122 LLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 175


>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
          Length = 192

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 2/170 (1%)

Query: 14  LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73
           +F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GG
Sbjct: 24  IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNICFTVWDVGG 82

Query: 74  QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133
           Q + R +W  Y +    +++VVD+ D + +  S  EL  +L +  L    LLV  NK D 
Sbjct: 83  QDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM 142

Query: 134 PEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
           P A+   +L +++GL+ +  R            T +   +DWL  H  SK
Sbjct: 143 PNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL-SHELSK 191


>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
           Into The Coat-controlled Gtp Hydrolysis In The
           Disassembly Of Cop Ii
 pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
           Into The Coat-controlled Gtp Hydrolysis In The
           Disassembly Of Cop Ii
          Length = 189

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 13/177 (7%)

Query: 15  FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74
            +K+  +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG 
Sbjct: 12  LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGG 70

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
            + R +W+ Y  A++ IV++VD AD++ L  S+ EL  L++  ++  +P+L+LGNKID+P
Sbjct: 71  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 130

Query: 135 EALSKEDLMEQMG------------LKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
           EA+S+E L E  G            LK +  R +  +M S            W+ ++
Sbjct: 131 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 187


>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
          Length = 162

 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 1/158 (0%)

Query: 25  IGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY 84
           +GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y
Sbjct: 6   LGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHY 64

Query: 85  CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLME 144
                 +++VVD AD D +  +R ELH +++        +L+  NK D P+A    ++ E
Sbjct: 65  YTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQE 124

Query: 145 QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182
           ++GL  I DR          +   +   + WL  + KS
Sbjct: 125 KLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 162


>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
 pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
          Length = 180

 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 1/163 (0%)

Query: 14  LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73
           LF K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GG
Sbjct: 12  LFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNICFTVWDVGG 70

Query: 74  QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133
           Q R R +W+ Y +    +++VVD+ D + +     EL  +L    L    LL+  NK D 
Sbjct: 71  QDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDL 130

Query: 134 PEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176
           P A++  ++ +++GL+S+ +R            T +   +DWL
Sbjct: 131 PNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWL 173


>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
           Factor-Like 1.
 pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
           Factor-Like 1
          Length = 189

 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 2/184 (1%)

Query: 1   MGLWEAFLNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV 59
           MG W A L     L    +++ + ++GL NAGKTS++  +  G     +      N+  +
Sbjct: 3   MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG-VNLETL 61

Query: 60  TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL 119
              N++ ++WDLGGQ   R  W  Y     A++YVVD+ D D + V++ EL+ LL +  L
Sbjct: 62  QYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDEL 121

Query: 120 NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
               LL+  NK D P+A S+ ++ EQ+G+ SI +R       S K    +   +DWLV+ 
Sbjct: 122 RKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVER 181

Query: 180 SKSK 183
            + +
Sbjct: 182 LREQ 185


>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
 pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
          Length = 208

 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 87/138 (63%), Gaps = 1/138 (0%)

Query: 15  FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74
            +K+  +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG 
Sbjct: 31  LYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGH 89

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
            + R +W+ Y  A++ IV++VD AD+  L  S+ EL+ L++  +++ +P+L+LGNKID+ 
Sbjct: 90  EQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRT 149

Query: 135 EALSKEDLMEQMGLKSIT 152
           +A+S+E L E  GL   T
Sbjct: 150 DAISEEKLREIFGLYGQT 167


>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
           Arl1
 pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
           Arl1
 pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
           Arl1
 pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
           Arl1
          Length = 171

 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 1/166 (0%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
           +E  + ++GL  AGKT+++  +  G      IPT+GFN+  VT  N+  ++WDLGG    
Sbjct: 6   REXRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGLTSI 64

Query: 78  RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137
           R  W  Y     A++YVVD+ D D + +S+SEL   L +  L    L+V  NK D  +A 
Sbjct: 65  RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAX 124

Query: 138 SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
           +  +    +GL ++ DR+   +  S    T +D   +WLV+  KS+
Sbjct: 125 TSSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLKSR 170


>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
          Length = 186

 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 5/169 (2%)

Query: 17  KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76
           ++E+ L ++GL NAGKT+++     G   + + PT+GFN++ +      + +WD+GGQ  
Sbjct: 16  ERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKS 74

Query: 77  FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
            RS W  Y  +   +++VVD+AD   +   + EL  LL +  L G  LL+  NK D P A
Sbjct: 75  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134

Query: 137 LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV--IDWLVKHSKSK 183
           LS   + E + L SI  R     +  C   T  D +  IDWL+    S+
Sbjct: 135 LSXNAIQEALELDSI--RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181


>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
           Brefeldin A
 pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
           The Mutation Of The Catalytic Glutamate To Lysine
 pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
           Sec7 Domain
 pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
           Gdp
          Length = 164

 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 88/164 (53%), Gaps = 1/164 (0%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
           M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R 
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
           +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK D P A++ 
Sbjct: 60  LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 119

Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
            ++ +++GL S+  R          +   +   +DWL    +++
Sbjct: 120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163


>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
          Length = 186

 Score = 96.3 bits (238), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 5/169 (2%)

Query: 17  KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76
           ++E+ L ++GL NAGKT+++     G   + + PT+GFN++ +      + +WD+GGQ  
Sbjct: 16  ERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKS 74

Query: 77  FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
            RS W  Y  +   +++VVD+AD   +   + EL  LL +  L G  LL+  NK D P A
Sbjct: 75  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134

Query: 137 LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV--IDWLVKHSKSK 183
           LS   + E + L SI  R     +  C   T  D +  IDWL+    S+
Sbjct: 135 LSCNAIQEALELDSI--RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181


>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
 pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
 pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
          Length = 190

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 96/162 (59%), Gaps = 3/162 (1%)

Query: 18  QEMELSLIGLQNAGKTSLVNVI-ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76
           +E+ +  +GL N+GKT+++N +  +   S++++PT+GF++ K    +++  ++D+ GQ R
Sbjct: 20  KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79

Query: 77  FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNG--IPLLVLGNKIDKP 134
           +R++WE Y +   AI++V+D++D   + V++ EL  LL+ P +    IP+L   NK+D  
Sbjct: 80  YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139

Query: 135 EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176
           +A++   + + + L++I D+              +   +DWL
Sbjct: 140 DAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWL 181


>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
           With Arf1 Gtp Form
 pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
 pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
 pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
 pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
 pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
 pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
 pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
 pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
          Length = 166

 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 87/164 (53%), Gaps = 1/164 (0%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
           M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GG  + R 
Sbjct: 3   MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGLDKIRP 61

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
           +W  Y +    +++VVD+ D + +  +R EL  +L++  L    LLV  NK D P A++ 
Sbjct: 62  LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 121

Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
            ++ +++GL S+  R          +   +   +DWL    +++
Sbjct: 122 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 165


>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
 pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
          Length = 190

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 14/191 (7%)

Query: 1   MGLWEAFLNWLRSLF-----FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN 55
           M  W+ F  W R +      + +  +L  +GL NAGKT+L++++     +  + PT    
Sbjct: 1   MAGWDIF-GWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT 58

Query: 56  MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS 115
             ++  GN+    +DLGG  + R +W+ Y   V+ IV++VDAAD +    +R EL  L +
Sbjct: 59  SEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFN 118

Query: 116 KPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT-------DREVCCYMISCKNSTN 168
              L  +P ++LGNKID P A+S+ +L   +GL + T        R V  +M S      
Sbjct: 119 IAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178

Query: 169 IDTVIDWLVKH 179
                 WL ++
Sbjct: 179 YLEAFQWLSQY 189


>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
          Length = 187

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 5/151 (3%)

Query: 14  LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73
           LF  QE ++ ++GL NAGKT+++   +         PT+G N+ ++   N    +WD+GG
Sbjct: 11  LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINNTRFLMWDIGG 69

Query: 74  QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133
           Q   RS W  Y      ++ VVD+ D + + V+R EL+ +L+   L    LL+  NK D 
Sbjct: 70  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129

Query: 134 PEALSKEDLMEQMGLKSITDR----EVCCYM 160
            E ++  ++ + + L SI D     + CC +
Sbjct: 130 KECMTVAEISQFLKLTSIKDHQWHIQACCAL 160


>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
           Brucei With Bound Nucleotide Analogue Gppnp
          Length = 199

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 91/177 (51%), Gaps = 9/177 (5%)

Query: 17  KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQP 75
           K ++++ + GL N+GKT+++N +     S   I  TVG+N+    KG V   ++D+GG  
Sbjct: 15  KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAK 74

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK-------PSLNGIPLLVLG 128
           +FR +WE Y   + A+++VVD++D+  L V +SE+  +L         P    +P L   
Sbjct: 75  KFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFA 134

Query: 129 NKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 184
           NK+D   A +  +L+E + L ++  D     +  +    T +     WL + +  +S
Sbjct: 135 NKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191


>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
 pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
          Length = 179

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 5/151 (3%)

Query: 14  LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73
           LF  QE ++ ++GL NAGKT+++   +         PT+G N+ ++   N    +WD+GG
Sbjct: 11  LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINNTRFLMWDIGG 69

Query: 74  QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133
           Q   RS W  Y      ++ VVD+ D + + V+R EL+ +L+   L    LL+  NK D 
Sbjct: 70  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129

Query: 134 PEALSKEDLMEQMGLKSITDR----EVCCYM 160
            E ++  ++ + + L SI D     + CC +
Sbjct: 130 KECMTVAEISQFLKLTSIKDHQWHIQACCAL 160


>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
           Unc119a
 pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
           Unc119a
          Length = 169

 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 5/166 (3%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
           + L ++GL NAGKT+++     G   + + PT+GFN++ +      + +WD+GG    RS
Sbjct: 2   LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRS 60

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
            W  Y  +   +++VVD+AD   +   + EL  LL +  L G  LL+  NK D P ALS 
Sbjct: 61  YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC 120

Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTV--IDWLVKHSKSK 183
             + E + L SI  R     +  C   T  D +  IDWL+    S+
Sbjct: 121 NAIQEALELDSI--RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 164


>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
           Of Sec31
          Length = 167

 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 8/166 (4%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
           +L  +GL NAGKT+L++++     +  + PT      ++  GN+    +DLGG  + R +
Sbjct: 3   KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 61

Query: 81  WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
           W+ Y   V+ IV++VDAAD +    +R EL  L +   L  +P ++LGNKID P A+S+ 
Sbjct: 62  WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEA 121

Query: 141 DLMEQMGLKSIT-------DREVCCYMISCKNSTNIDTVIDWLVKH 179
           +L   +GL + T        R V  +M S            WL ++
Sbjct: 122 ELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 167


>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
          Length = 179

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 17/160 (10%)

Query: 11  LRSLFFKQEMELSLIGLQNAGKTSLV------NVIATGGYSEDMIPTVGFNMRKVTKGNV 64
           L SLF  QE ++ ++GL NAGKT+++       V+ T        PT+G N+ ++   N 
Sbjct: 8   LWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTS-------PTIGSNVEEIVVKNT 60

Query: 65  TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 124
              +WD+GGQ   RS W  Y      I+ VVD+ D + L +++ EL+ +L+   L    +
Sbjct: 61  HFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAV 120

Query: 125 LVLGNKIDKPEALSKEDLMEQMGLKSITDR----EVCCYM 160
           L+  NK D    ++  ++ + + L SI D     + CC +
Sbjct: 121 LIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCAL 160


>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
 pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
 pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
 pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
          Length = 183

 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 5/147 (3%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
           QE ++ ++GL NAGKT+++   +         PT+G N+ ++   N    +WD+GGQ   
Sbjct: 21  QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINNTRFLMWDIGGQESL 79

Query: 78  RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137
           RS W  Y      ++ VVD+ D + + V+R EL+ +L+   L    LL+  NK D  E +
Sbjct: 80  RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 139

Query: 138 SKEDLMEQMGLKSITDR----EVCCYM 160
           +  ++ + + L SI D     + CC +
Sbjct: 140 TVAEISQFLKLTSIKDHQWHIQACCAL 166


>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
           (Casp Target)
          Length = 181

 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 5/147 (3%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
           QE ++ ++GL NAGKT+++   +         PT+G N+ ++   N    +WD+GGQ   
Sbjct: 20  QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINNTRFLMWDIGGQESL 78

Query: 78  RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137
           RS W  Y      ++ VVD+ D + + V+R EL+ +L+   L    LL+  NK D  E +
Sbjct: 79  RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 138

Query: 138 SKEDLMEQMGLKSITDR----EVCCYM 160
           +  ++ + + L SI D     + CC +
Sbjct: 139 TVAEISQFLKLTSIKDHQWHIQACCAL 165


>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
          Length = 186

 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 5/157 (3%)

Query: 29  NAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAV 88
           NAGKT+++     G   + + PT+GFN++ +      + +WD+GGQ   RS W  Y  + 
Sbjct: 28  NAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86

Query: 89  SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 148
             +++VVD+AD       + EL  LL +  L G  LL+  NK D P ALS   + E + L
Sbjct: 87  DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146

Query: 149 KSITDREVCCYMISCKNSTNIDTV--IDWLVKHSKSK 183
            SI  R     +  C   T  D +  IDWL+    S+
Sbjct: 147 DSI--RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181


>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
           With Unc119a
 pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
           With Unc119a
          Length = 189

 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 1/166 (0%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
           QE+ + L+GL NAGKT+L+  +A+   S  + PT GFN++ V      + +WD+GGQ + 
Sbjct: 16  QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 74

Query: 78  RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137
           R  W  Y      ++YV+D+AD      +  EL +LL +  L+ +P+L+  NK D   A 
Sbjct: 75  RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 134

Query: 138 SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
              ++ E + L +I DR       S      +   ++W+ K+  +K
Sbjct: 135 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180


>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
          Length = 181

 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 1/166 (0%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
           QE+ + L+GL NAGKT+L+  +A+   S  + PT GFN++ V      + +WD+GGQ + 
Sbjct: 15  QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 73

Query: 78  RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137
           R  W  Y      ++YV+D+AD      +  EL +LL +  L+ +P+L+  NK D   A 
Sbjct: 74  RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133

Query: 138 SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
              ++ E + L +I DR       S      +   ++W+ K+  +K
Sbjct: 134 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179


>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
           Gdp-Alf4
          Length = 164

 Score = 82.8 bits (203), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 1/161 (0%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
           E+ + L+GL NAGKT+L+  +A+   S  + PT GFN++ V      + +WD+GGQ + R
Sbjct: 4   EVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 62

Query: 79  SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138
             W  Y      ++YV+D+AD      +  EL +LL +  L+ +P+L+  NK D   A  
Sbjct: 63  PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 122

Query: 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
             ++ E + L +I DR       S      +   ++W+ K+
Sbjct: 123 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 163


>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
          Length = 164

 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 1/161 (0%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
           E+ + L+GL NAGKT+L+  +A+   S  + PT GFN++ V      + +WD+GG  + R
Sbjct: 4   EVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGLRKIR 62

Query: 79  SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138
             W  Y      ++YV+D+AD      +  EL +LL +  L+ +P+L+  NK D   A  
Sbjct: 63  PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 122

Query: 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
             ++ E + L +I DR       S      +   ++W+ K+
Sbjct: 123 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 163


>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
 pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
          Length = 182

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 93/176 (52%), Gaps = 17/176 (9%)

Query: 17  KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVT-KGN--VTIKLWDL 71
           K  +++ ++G    GKTSL++      YS+    T+G  F  ++VT  G+   T+++WD 
Sbjct: 6   KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDT 65

Query: 72  GGQPRFRSMWERYCRAVSAIVYVVD---AADYDNLPVSRSE--LHDLLSKPSLNGIPLLV 126
            GQ RF+S+   + R     V V D   A+ ++N+   R E  +H  ++ P     P ++
Sbjct: 66  AGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET--FPFVI 123

Query: 127 LGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180
           LGNKID  E+  +  E   +++  KS+ D  +  ++ S KN+ N+DT  + + + +
Sbjct: 124 LGNKIDAEESKKIVSEKSAQELA-KSLGD--IPLFLTSAKNAINVDTAFEEIARSA 176


>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
           Analogue
          Length = 180

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 25/183 (13%)

Query: 15  FFKQEMELSLIGLQNAGKTSLVNVIATGGY-SEDMIPTVGFNMRK----VTKGNVTIKLW 69
           F+    ++ L+G    GKT L+     G + +   I TVG + R     V    V +++W
Sbjct: 6   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 65

Query: 70  DLGGQPRFRSMWERYCRAVSAIVYVVDA---ADYDNLPVSRSELHDLLSKPSLNGIPLLV 126
           D  GQ RFRS+   Y R   A++ + D    A +DN+    +E+H+     + + + L++
Sbjct: 66  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEY----AQHDVALML 121

Query: 127 LGNKIDKPE--ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181
           LGNK+D      + +ED   L ++ GL  +          S K   N+D     + K  K
Sbjct: 122 LGNKVDSAHERVVKREDGEKLAKEYGLPFME--------TSAKTGLNVDLAFTAIAKELK 173

Query: 182 SKS 184
            +S
Sbjct: 174 RRS 176


>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
          Length = 170

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 11/161 (6%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQP 75
           ++L L+G    GK+S+V    +  ++E+  PT+G  F  ++VT    T+K  +WD  GQ 
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSR---SELHDLLSKPSLNGIPLLVLGNKID 132
           RF S+   Y R   A + V D     +   +R    ELH+  SK     I + ++GNKID
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD----IIIALVGNKID 119

Query: 133 KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173
             +   +  +  + G K   ++ +  +  S K   N++ V 
Sbjct: 120 XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160


>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
           Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
 pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
           Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
 pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
           Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
 pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
           Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
          Length = 181

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 10/156 (6%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
            +L LIG    GK+ L+   A   Y+E  I T+G  F +R +     TIKL  WD  GQ 
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
           RFR++   Y R    I+ V D  D ++    +  L ++    S N   LLV GNK D   
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLV-GNKSD--- 125

Query: 136 ALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNID 170
            L+ + +++    K   D     ++  S KN+TN++
Sbjct: 126 -LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVE 160


>pdb|4FMC|B Chain B, Espg-Rab1 Complex
 pdb|4FMC|D Chain D, Espg-Rab1 Complex
 pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
 pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
 pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
 pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
          Length = 171

 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 10/156 (6%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
            +L LIG    GK+ L+   A   Y+E  I T+G  F +R +     TIKL  WD  GQ 
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
           RFR++   Y R    I+ V D  D ++    +  L ++    S N   LLV GNK D   
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV-GNKCD--- 122

Query: 136 ALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNID 170
            L+ + +++    K   D     ++  S KN+TN++
Sbjct: 123 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 157


>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
 pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
 pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
          Length = 171

 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 10/156 (6%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
            +L LIG    GK+ L+   A   Y+E  I T+G  F +R +     TIKL  WD  GQ 
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
           RFR++   Y R    I+ V D  D ++    +  L ++    S N   LLV GNK D   
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV-GNKCD--- 122

Query: 136 ALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNID 170
            L+ + +++    K   D     ++  S KN+TN++
Sbjct: 123 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 157


>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
           Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
 pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
           Y77
 pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
           Y77
 pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
           Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
 pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
           Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
 pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
           Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
 pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
           Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
 pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
           Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
          Length = 175

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 10/156 (6%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
            +L LIG    GK+ L+   A   Y+E  I T+G  F +R +     TIKL  WD  GQ 
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
           RFR++   Y R    I+ V D  D ++    +  L ++    S N   LLV GNK D   
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLV-GNKSD--- 125

Query: 136 ALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNID 170
            L+ + +++    K   D     ++  S KN+TN++
Sbjct: 126 -LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVE 160


>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
 pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
          Length = 199

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
            +L LIG    GK+ L+   A   Y+E  I T+G  F +R +     TIKL  WD  GQ 
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
           RFR++   Y R    I+ V D  D ++    +  L ++    S N +  L++GNK D   
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN-VNKLLVGNKCD--- 149

Query: 136 ALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNID 170
            L+ + +++    K   D     ++  S KN+TN++
Sbjct: 150 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 184


>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
           Rab1a
          Length = 175

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 18/173 (10%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
            +L LIG    GK+ L+   A   Y++  I T+G  F +R ++  N T+KL  WD  GQ 
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID--- 132
           RFR++   Y R    I+ V D  D D+    +  + + + + ++  +  L++GNK D   
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQE-IDRYAMENVNKLLVGNKCDLVS 128

Query: 133 KPEALSKE--DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
           K    S E  +L +  G+K I          S KN+ N++     +    K +
Sbjct: 129 KRVVTSDEGRELADSHGIKFIE--------TSAKNAYNVEQAFHTMAGEIKKR 173


>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
          Length = 164

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 10/155 (6%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPR 76
           +L LIG    GK+ L+   A   Y+E  I T+G  F +R +     TIKL  WD  GQ R
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60

Query: 77  FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
           FR++   Y R    I+ V D  D ++    +  L ++    S N   LLV GNK D    
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV-GNKCD---- 115

Query: 137 LSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNID 170
           L+ + +++    K   D     ++  S KN+TN++
Sbjct: 116 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 150


>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
           Gtpase Bound To Gdp And Alf3
          Length = 198

 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 16/145 (11%)

Query: 12  RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIK 67
           RS  FK    + +IG  N GKT L      G + +    T+G + R+    +    + I+
Sbjct: 26  RSRIFK----IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 81

Query: 68  LWDLGGQPRFR-SMWERYCRAVSAIVYVVD---AADYDNLPVSRSELHDLLSKPSLNGIP 123
           LWD  GQ RFR SM + Y R V A+V+V D    A + +LP    E    L     N IP
Sbjct: 82  LWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLA---NDIP 138

Query: 124 LLVLGNKIDKPEALS-KEDLMEQMG 147
            +++GNK D   A+    DL ++  
Sbjct: 139 RILVGNKCDLRSAIQVPTDLAQKFA 163


>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
          Length = 191

 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 10/156 (6%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
            +L LIG    GK+ L+   A   Y+E  I T+G  F +R +     TIKL  WD  GQ 
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
           RFR++   Y R    I+ V D  D ++    +  L ++    S N   LLV GNK D   
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV-GNKCD--- 141

Query: 136 ALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNID 170
            L+ + +++    K   D     ++  S KN+TN++
Sbjct: 142 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 176


>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
           The Coiled- Coil Domain Of Lida From Legionella
           Pneumophila
          Length = 196

 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
            +L LIG    GK+ L+   A   Y+E  I T+G  F +R +     TIKL  WD  GQ 
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
           RFR++   Y R    I+ V D  D ++    +  L ++    S N +  L++GNK D   
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN-VNKLLVGNKCD--- 132

Query: 136 ALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNID 170
            L+ + +++    K   D     ++  S KN+TN++
Sbjct: 133 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 167


>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
          Length = 189

 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 12  RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIK 67
           RS  FK    + +IG  N GKT L      G + +    T+G + R+    +    + I+
Sbjct: 17  RSRIFK----IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 72

Query: 68  LWDLGGQPRFR-SMWERYCRAVSAIVYVVD---AADYDNLPVSRSELHDLLSKPSLNGIP 123
           LWD  GQ RFR SM + Y R V A+V+V D    A + +LP    E    L     N IP
Sbjct: 73  LWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA---NDIP 129

Query: 124 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
            +++GNK D   A+     + Q   K      +  +  S KN  + D V
Sbjct: 130 RILVGNKCDLRSAIQVPTDLAQ---KFADTHSMPLFETSAKNPNDNDHV 175


>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
           Complex With The Coiled-Coil Domain Of Lida From
           Legionella Pneumophila
          Length = 181

 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 10/156 (6%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
            +L LIG    GK  L+   A   Y+E  I T+G  F +R +     TIKL  WD  GQ 
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
           RFR++   Y R    I+ V D  D ++    +  L ++    S N   LLV GNK D   
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV-GNKCD--- 132

Query: 136 ALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNID 170
            L+ + +++    K   D     ++  S KN+TN++
Sbjct: 133 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 167


>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
 pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
          Length = 201

 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 7/155 (4%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMR--KVTKGNVTIKLWDLGGQP 75
            +L L+G  + GKT +V    TG +SE    T+G  F M+  ++    V +++WD  GQ 
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
           RFR++ + Y R+ +  +   D     +       + D+      N + LL+ GNK D  E
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLI-GNKSDLSE 148

Query: 136 ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170
            L +  L E   L    D  +C    S K+S+N++
Sbjct: 149 -LREVSLAEAQSLAEHYDI-LCAIETSAKDSSNVE 181


>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
           (Gtpase Domain) Complex
          Length = 175

 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 10/156 (6%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
            +L LIG    GK+ L+   A   Y+E  I T+G  F +R +     TIKL  WD  GQ 
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
           RFR++   Y R    I+ V D  D ++    +  L ++    S N   LLV G K D   
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV-GIKCD--- 124

Query: 136 ALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNID 170
            L+ + +++    K   D     ++  S KN+TN++
Sbjct: 125 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 159


>pdb|4FMC|F Chain F, Espg-Rab1 Complex
          Length = 117

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 22  LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRF 77
           L LIG    GK+ L+   A   Y+E  I T+G  F +R +     TIKL  WD  GQ RF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60

Query: 78  RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           R++   Y R    I+ V D  D ++    +  L ++    S N   LLV GNK D
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV-GNKCD 114


>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
 pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
          Length = 181

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 80/168 (47%), Gaps = 19/168 (11%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75
            +L +IG    GK+SL+   A   +S   I T+G + +    ++    V +++WD  GQ 
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
           RFR++   Y R    ++ V D    ++    +  LH++    + + +  +++GNK D PE
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDPE 127

Query: 136 --ALSKEDLME---QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
              +  ED  +   QMG++         +  S K + N++ + + + +
Sbjct: 128 RKVVETEDAYKFAGQMGIQ--------LFETSAKENVNVEEMFNCITE 167


>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
           With Gdp
          Length = 192

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 19/169 (11%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQ 74
           ++++ +IG +  GKTSL+       + E    TVG + +    ++    + +++WD  GQ
Sbjct: 26  KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85

Query: 75  PRFRSMWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            RF S+   Y R+   I+ V D      +D+LP    +   ++ K +     LL++GNK+
Sbjct: 86  ERFNSITSAYYRSAKGIILVYDITKKETFDDLP----KWMKMIDKYASEDAELLLVGNKL 141

Query: 132 DKPEALSKEDLMEQMGLK---SITDREVCCYMISCKNSTNIDTVIDWLV 177
           D     +  ++  Q G K    IT    C    S K++ N+D +   LV
Sbjct: 142 D---CETDREITRQQGEKFAQQITGMRFC--EASAKDNFNVDEIFLKLV 185


>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
           (Mouse)
          Length = 164

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 10/165 (6%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
           + +L L+G    GK+SLV     G + E    T+G  F  + V   + T+K  +WD  GQ
Sbjct: 3   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 62

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
            R+ S+   Y R   A + V D  + D    +++ + +L  + S N I + + GNK D  
Sbjct: 63  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN-IVIALAGNKAD-- 119

Query: 135 EALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
             L+ +  +E    ++  D     +M  S K + N++ +   + K
Sbjct: 120 --LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 162


>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
           With Gdp
          Length = 162

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
           + +L  +G Q  GKTS++       +  +   T+G +    T    +G V ++LWD  GQ
Sbjct: 1   KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            RFRS+   Y R  +A + V D  +  +   +   + D+L++   + I  LV GNK D
Sbjct: 61  ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALV-GNKTD 117


>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
          Length = 206

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
            +L LIG    GK+ L+   +   Y+ D I T+G  F ++ V     T+KL  WD  GQ 
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           RFR++   Y R    I+ V D  D ++    +  L ++    +   + LLV GNK D
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNKCD 124


>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
 pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
          Length = 183

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 8/168 (4%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
            +L LIG    GKT ++   +   ++   I T+G  F +R +      IKL  WD  GQ 
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
           RFR++   Y R    I+ V D  +  +    R+ + ++    S + +  ++LGNK D  +
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD-VEKMILGNKCDVND 127

Query: 136 ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
              K  + ++ G K   D  +     S K + N++     L +  K+K
Sbjct: 128 ---KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172


>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
           Gppnhp
          Length = 170

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
           + +L L+G    GK+SLV     G + E    T+G  F  + V   + T+K  +WD  GQ
Sbjct: 6   QFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
            R+ S+   Y R   A + V D  + ++   +++ + +L  + S N I + + GNK D  
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IVIALSGNKAD-- 122

Query: 135 EALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
             L+ +  ++    +S  D     +M  S K S N++ +   + K
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165


>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
           Gppnhp
          Length = 170

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
           + +L L+G    GK+SLV     G + E    T+G  F  + V   + T+K  +WD  GQ
Sbjct: 6   QFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
            R+ S+   Y R   A + V D  + ++   +++ + +L  + S N I + + GNK D  
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IVIALSGNKAD-- 122

Query: 135 EALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
             L+ +  ++    +S  D     +M  S K S N++ +   + K
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165


>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
           Gppnhp
          Length = 170

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
           + +L L+G    GK+SLV     G + E    T+G  F  + V   + T+K  +WD  GQ
Sbjct: 6   QFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
            R+ S+   Y R   A + V D  + ++   +++ + +L  + S N I + + GNK D  
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IVIALSGNKAD-- 122

Query: 135 EALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
             L+ +  ++    +S  D     +M  S K S N++ +   + K
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165


>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
           Prenylated Ypt1 Gtpase
 pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
           Rab Ypt1p
 pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
           Rab Ypt1p
 pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
           Rab Ypt1p
 pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
           Rab Ypt1p
          Length = 206

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
            +L LIG    GK+ L+   +   Y+ D I T+G  F ++ V     T+KL  WD  GQ 
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           RFR++   Y R    I+ V D  D ++    +  L ++    +   + LLV GNK D
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNKCD 124


>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
           Rab8a:gppnhp
 pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
           Rab8a:gppnhp
 pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
           Rab8a:gppnhp
 pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
           Rab8a:gppnhp
 pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
          Length = 174

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 8/168 (4%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
            +L LIG    GKT ++   +   ++   I T+G  F +R +      IKL  WD  GQ 
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
           RFR++   Y R    I+ V D  +  +    R+ + ++    S + +  ++LGNK D  +
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD-VEKMILGNKCDVND 125

Query: 136 ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
              K  + ++ G K   D  +     S K + N++     L +  K+K
Sbjct: 126 ---KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170


>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
          Length = 185

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 10/156 (6%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
            +L LIG    GK+ L+   +   Y+ D I T+G  F ++ V     T+KL  WD  GQ 
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
           RFR++   Y R    I+ V D  D ++    +  L ++    +   + LLV GNK D   
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNKCD--- 137

Query: 136 ALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNID 170
            L  + ++E    K   D     ++  S  +STN++
Sbjct: 138 -LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVE 172


>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
           C-Terminal Domain
 pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
           C-Terminal Domain
 pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
           C-Terminal Domain
 pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
           C-Terminal Domain
 pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
           C-Terminal Domain
          Length = 171

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
           + +L L+G    GK+SLV     G + E    T+G  F  + V   + T+K  +WD  GQ
Sbjct: 7   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
            R+ S+   Y R   A + V D  + ++   +++ + +L  + S N I + + GNK D  
Sbjct: 67  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IVIALSGNKAD-- 123

Query: 135 EALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
             L+ +  ++    +S  D     +M  S K S N++ +   + K
Sbjct: 124 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 166


>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
 pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
           Resolution
          Length = 170

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
           + +L L+G    GK+SLV     G + E    T+G  F  + V   + T+K  +WD  GQ
Sbjct: 6   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
            R+ S+   Y R   A + V D  + ++   +++ + +L  + S N I + + GNK D  
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IVIALSGNKAD-- 122

Query: 135 EALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
             L+ +  ++    +S  D     +M  S K S N++ +   + K
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165


>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
          Length = 179

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 12/168 (7%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75
            ++ L+G    GK+SL+N   T  +   +  T+G        +V    VT+++WD  GQ 
Sbjct: 12  FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71

Query: 76  RFRSMWERYCRAVSAIVY---VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           RFRS+   + R     +    V D+  + NL   + E             P ++LGNK D
Sbjct: 72  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTD 131

Query: 133 -KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
            K   +S E+   Q   K   D     +  S K+STN+    +  V+ 
Sbjct: 132 IKERQVSTEEA--QAWCKDNGDYPY--FETSAKDSTNVAAAFEEAVRR 175


>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
 pdb|2BKU|C Chain C, Kap95p:rangtp Complex
          Length = 177

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 17/167 (10%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
           + +L L+G    GKT+ V    TG + +  +PT+G  +  +     +G +   +WD  GQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 75  PRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F  + +  Y +A  AI+   V     Y N+P      H  L +   N IP+++ GNK+
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVRVCEN-IPIVLCGNKV 124

Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
           D      K+  ++   +     + +  Y IS K++ N +    WL +
Sbjct: 125 D-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166


>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
          Length = 166

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 10/165 (6%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTV--GFNMRKVTKGNVTIK--LWDLGGQ 74
           + +L L+G    GK+SLV     G + E    T+   F  + V   + T+K  +WD  GQ
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
            R+ S+   Y R   A + V D  + D    +++ + +L  + S N I + + GNK D  
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN-IVIALAGNKAD-- 121

Query: 135 EALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
             L+ +  +E    ++  D     +M  S K + N++ +   + K
Sbjct: 122 --LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 164


>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
           Gdp
 pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
           Gdp And Aluminum Fluoride
 pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
           Gtp
          Length = 170

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
           + +L L+G    GK+SLV     G + E    T+G  F  + V   + T+K  +WD  GQ
Sbjct: 6   QFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
            R+ S+   Y R   A + V D  + ++   +++ + +L  + S N I + + GNK D  
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IVIALSGNKAD-- 122

Query: 135 EALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
             L+ +  ++    +S  D     +M  S K S N++ +   + K
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165


>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
           With An Active Conformation Of Switch Ii
 pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
           With An Active Conformation Of Switch Ii
          Length = 177

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 10/163 (6%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
           L+G    GK+SL+N   T  +   +  T+G        +V    VT+++WD  GQ RFRS
Sbjct: 14  LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 73

Query: 80  MWERYCRAVSAIVY---VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
           +   + R     +    V D+  + NL   + E             P ++LGNKID  E 
Sbjct: 74  LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE- 132

Query: 137 LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
             ++   E+       + +   +  S K++TN+    +  V+ 
Sbjct: 133 --RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 173


>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
           Novel Antiviral Drug Target
 pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
           Novel Antiviral Drug Target
          Length = 177

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 10/163 (6%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
           L+G    GK+SL+N   T  +   +  T+G        +V    VT+++WD  GQ RFRS
Sbjct: 12  LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 71

Query: 80  MWERYCRAVSAIVY---VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
           +   + R     +    V D+  + NL   + E             P ++LGNKID  E 
Sbjct: 72  LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE- 130

Query: 137 LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
             ++   E+       + +   +  S K++TN+    +  V+ 
Sbjct: 131 --RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 171


>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
 pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
 pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
 pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
          Length = 171

 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 10/165 (6%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
           + +L L+G    GK+SLV     G + E    T+G  F  + V   + T+K  +WD  GQ
Sbjct: 7   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
            R+ S+   Y R   A + V D  + ++   +++ + +L  + S N I + + GNK D  
Sbjct: 67  ERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IVIALSGNKAD-- 123

Query: 135 EALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
             L+ +  ++    +S  D     +   S K S N++ +   + K
Sbjct: 124 --LANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAK 166


>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
           Gppnhp
          Length = 170

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
           + +L L+G    GK+SLV     G + E    T+G  F  + V   + T+K  +WD  GQ
Sbjct: 6   QFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
            R+ S+   Y R   A + V D  + ++   +++ + +L  + S N I + + GNK D  
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IVIALSGNKAD-- 122

Query: 135 EALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
             L+ +  ++    +S  D     +M  S K S N++ +   + K
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165


>pdb|1BYU|A Chain A, Canine Gdp-Ran
 pdb|1BYU|B Chain B, Canine Gdp-Ran
          Length = 216

 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 17/167 (10%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
           + +L L+G    GKT+ V    TG + +  +PT+G  +  +     +G +   +WD  GQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 75  PRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F  + +  Y +A  AI+   V     Y N+P    +L  +        IP+++ GNK+
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKV 124

Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
           D      K+  ++   +     + +  Y IS K++ N +    WL +
Sbjct: 125 D-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166


>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
          Length = 170

 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 5/119 (4%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGG 73
           ++ +L  +G Q+ GKTSL+       +      T+G +    T       + ++LWD  G
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64

Query: 74  QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           Q RFRS+   Y R  +A V V D  + ++   +   + D+ ++   + I +LV GNK D
Sbjct: 65  QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV-GNKTD 122


>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
           With Monoprenylated Rab7 Protein
 pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
 pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
 pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
 pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
          Length = 207

 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 7/120 (5%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQP 75
           +++ ++G    GKTSL+N      +S     T+G  F  ++V   +  VT+++WD  GQ 
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 76  RFRSMWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           RF+S+   + R     V V D      +  L   R E     S       P +VLGNKID
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128


>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
 pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
          Length = 179

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
           + +L L+G    GK+SLV     G + E    T+G  F  + V   + T+K  +WD  GQ
Sbjct: 8   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQ 67

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
            R+ S+   Y R   A + V D  + +    +++ + +L  + S + I + + GNK D  
Sbjct: 68  ERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS-IVIALAGNKAD-- 124

Query: 135 EALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
             L+ + ++E    ++  D     +M  S K + N++ +   + K
Sbjct: 125 --LANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAK 167


>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
 pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
 pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
 pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
 pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
          Length = 207

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 7/120 (5%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQP 75
           +++ ++G    GKTSL+N      +S     T+G  F  ++V   +  VT+++WD  GQ 
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 76  RFRSMWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           RF+S+   + R     V V D      +  L   R E     S       P +VLGNKID
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128


>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
          Length = 195

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 4/118 (3%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT---KGN-VTIKLWDLGGQP 75
           +++ +IG    GK+SL+       +  ++  T+G + +  T    GN   + +WD  GQ 
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133
           RFR++   Y R    ++ V D    D      + L++L +  + N I   ++GNKIDK
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDK 133


>pdb|1VG1|A Chain A, Gdp-bound Rab7
 pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
           With C-Terminally Truncated Rab7 Protein
 pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
           With C-Terminally Truncated Rab7 Protein
 pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
           With C-Terminally Truncated Rab7 Protein
 pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
           With C-Terminally Truncated Rab7 Protein
          Length = 185

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 7/120 (5%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQP 75
           +++ ++G    GKTSL+N      +S     T+G  F  ++V   +  VT+++WD  GQ 
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 76  RFRSMWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           RF+S+   + R     V V D      +  L   R E     S       P +VLGNKID
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128


>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
 pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
          Length = 167

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 10/165 (6%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
           + +L L+G    GK+SLV     G + E    T+G  F  + V   + T+K  +WD  G 
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
            R+ S+   Y R   A + V D  + D    +++ + +L  + S N I + + GNK D  
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN-IVIALAGNKAD-- 121

Query: 135 EALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
             L+ +  +E    ++  D     +M  S K + N++ +   + K
Sbjct: 122 --LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 164


>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
           Inactive Gdp-Bound Form
 pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
           Active Gtpgs-Bound Form
 pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
 pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
 pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
          Length = 171

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
           + +L  +G Q+ GKTSL+       +      T+G +    T       V ++LWD  GQ
Sbjct: 2   KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 61

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            RFRS+   Y R  +  V V D  + ++   +   + D+ ++   + I +LV GNK D
Sbjct: 62  ERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLV-GNKTD 118


>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
           Bound Form At 1.8 Resolution
 pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
           Bound Form At 1.8 Resolution
 pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
           Bound Form At 1.8 Resolution
 pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
           Bound Form At 1.8 Resolution
          Length = 162

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
           + +L  +G Q+ GKTSL+       +      T+G +    T       V ++LWD  GQ
Sbjct: 1   KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            RFRS+   Y R  +  V V D  + ++   +   + D+ ++   + I +LV GNK D
Sbjct: 61  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV-GNKTD 117


>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
           Analogue
          Length = 180

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 10/167 (5%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75
           +++ L+G    GK+SL+N   T  +      T+G        +V    VT+++WD  GQ 
Sbjct: 8   LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67

Query: 76  RFRSMWERYCRAVSAIVY---VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           RF+S+   + R     +    V D   ++NL   + E             P +VLGNK+D
Sbjct: 68  RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127

Query: 133 KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
           K +   ++   E+     + + +      S K+ TN+    +  V+ 
Sbjct: 128 KED---RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQ 171


>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
          Length = 201

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 14/161 (8%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN-MRKVTKGN---VTIKLWDLGGQP 75
            ++ LIG    GKT LV     G +      T+G + M K  + N   V +++WD  GQ 
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 76  RFRSMWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           RFRS+ + Y R+ +A++   D      +  LP    E+    S    N +  +++GNKID
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS----NKVITVLVGNKID 142

Query: 133 KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173
             E   + ++ +Q   +    +++     S K S N++ + 
Sbjct: 143 LAE---RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180


>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
           Gmppnp
 pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
           Gmppnp
          Length = 179

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 8/156 (5%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGG 73
           ++ +L  +G Q+ GKTSL+       +      T+G +    T       V ++LWD  G
Sbjct: 13  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72

Query: 74  QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133
           Q RFRS+   Y R  +  V V D  + ++   +   + D+ ++   + I +LV GNK D 
Sbjct: 73  QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLV-GNKTDL 131

Query: 134 PEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169
            +   K  +  + G +   +  V     S K   N+
Sbjct: 132 SD---KRQVSTEEGERKAKELNVMFIETSAKAGYNV 164


>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
           Domain, And Phosphate Complex
          Length = 174

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 27/177 (15%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75
           M++ LIG    GK+ L+       ++   I T+G + +     +    V ++LWD  GQ 
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK----- 130
           RFR++   Y R    I+ V D  D      +  +    +++ + +   LL++GNK     
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTDERTF-TNIKQWFKTVNEHANDEAQLLLVGNKSDMET 126

Query: 131 ----IDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
                D+ EAL+KE     +G+  I          S KN  N++ +   L K  + K
Sbjct: 127 RVVTADQGEALAKE-----LGIPFIES--------SAKNDDNVNEIFFTLAKLIQEK 170


>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
           Analogue
          Length = 192

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 5/119 (4%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGG 73
           +E+++ L+G    GK+S+V       +  ++ PT+G  F  + V  GN   K  +WD  G
Sbjct: 22  RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAG 81

Query: 74  QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           Q RF S+   Y R  +A V V D    D+    +  + +L      N I + + GNK D
Sbjct: 82  QERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN-IVMAIAGNKCD 139


>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
           Zinc Finger Of Eea1
 pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
           Zinc Finger Of Eea1
          Length = 168

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 10/165 (6%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
           + +L L+G    GK+SLV     G + E    T+G  F  + V   + T+K  +WD  G 
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64

Query: 75  PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134
            R+ S+   Y R   A + V D  + ++   +++ + +L  + S N I + + GNK D  
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IVIALSGNKAD-- 121

Query: 135 EALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
             L+ +  ++    +S  D     +M  S K S N++ +   + K
Sbjct: 122 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 164


>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
           Complex With Fip2
 pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
           Complex With Fip2
          Length = 178

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
           LIG    GKT+L++      +S D   T+G  F+ R V  G   +K  +WD  G  R+R+
Sbjct: 15  LIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA 74

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
           +   Y R     + V D   +    V    L +L        + +LV GNK D  +A
Sbjct: 75  ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV-GNKSDLSQA 130


>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
          Length = 213

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 27/177 (15%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75
           M++ LIG    GK+ L+       ++   I T+G + +     +    V ++LWD  GQ 
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK----- 130
           RFR++   Y R    I+ V D  D +    +  +    +++ + +   LL++GNK     
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139

Query: 131 ----IDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
                D+ EAL+KE     +G+  I          S KN  N++ +   L K  + K
Sbjct: 140 RVVTADQGEALAKE-----LGIPFIES--------SAKNDDNVNEIFFTLAKLIQEK 183


>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
 pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
 pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
 pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
          Length = 170

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 11/120 (9%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQP 75
            ++ L+G    GKTSLV       +++  I T+G  F  +K+  G   V + +WD  GQ 
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS---ELHDLLSKPSLNGIPLLVLGNKID 132
           RF ++   Y R  +  + V D  D D+    ++   EL  +L     N I L ++GNKID
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKID 122


>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
           Cargo (Kap60p) And Rangtp
          Length = 176

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 17/167 (10%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQ 74
           + +L L+G    GKT+ V    TG + +  + T+G  +        +G +   +WD  GQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 75  PRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F  + +  Y +A  AI+   V     Y N+P      H  L +   N IP+++ GNK+
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVRVCEN-IPIVLCGNKV 124

Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
           D      K+  ++   +     + +  Y IS K++ N +    WL +
Sbjct: 125 D-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166


>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
 pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
          Length = 199

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 5/133 (3%)

Query: 12  RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRK-VTKGNVTI-K 67
           +S   ++  ++ L G    GK+S +  +    + E++  T+G  F M+  +  G  T+ +
Sbjct: 21  KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQ 80

Query: 68  LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 127
           LWD  GQ RFRS+ + Y R    ++ + D     +    R E  D++   +   +P++++
Sbjct: 81  LWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLV 139

Query: 128 GNKIDKPEALSKE 140
           GNK D  +  + E
Sbjct: 140 GNKADIRDTAATE 152


>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
           Imidotriphosphate
 pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
           Imidotriphosphate
          Length = 170

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 27/177 (15%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75
           M++ LIG    GK+ L+       ++   I T+G + +     +    V +++WD  GQ 
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK----- 130
           RFR++   Y R    I+ V D  D +    +  +    +++ + +   LL++GNK     
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122

Query: 131 ----IDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
                D+ EAL+KE     +G+  I          S KN  N++ +   L K  + K
Sbjct: 123 RVVTADQGEALAKE-----LGIPFIES--------SAKNDDNVNEIFFTLAKLIQEK 166


>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
           (Gdp-3'p- Bound) Form
 pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
           (Gppnhp-Bound) Form
          Length = 178

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 16/133 (12%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVT---KGNVTIKLWDLG 72
           +++++ ++G   +GKTSL    A   + +    T+G  F +R++T     NVT+++WD+G
Sbjct: 5   RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIG 64

Query: 73  GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNG--IPLLVL-GN 129
           GQ     M ++Y      ++ V D  +Y +   +  + + ++ K S      PL+ L GN
Sbjct: 65  GQTIGGKMLDKYIYGAQGVLLVYDITNYQSFE-NLEDWYTVVKKVSEESETQPLVALVGN 123

Query: 130 KID-------KPE 135
           KID       KPE
Sbjct: 124 KIDLEHMRTIKPE 136


>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
          Length = 193

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
           LIG    GKT+L++      +S D   T+G  F+ R V  G   +K  +WD  G  R+R+
Sbjct: 30  LIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA 89

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
           +   Y R     + V D   +    V    L +L        I ++++GNK D  +A
Sbjct: 90  ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT-IVVMLVGNKSDLSQA 145


>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
           Gtpase Sec4p
          Length = 170

 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 13/166 (7%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
           LIG    GK+ L+       ++   I T+G + +     +    V ++LWD  GQ RFR+
Sbjct: 8   LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT 67

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
           +   Y R    I+ V D  D +    +  +    +++ + +   LL++GNK D    +  
Sbjct: 68  ITTAYYRGAXGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRVVT 126

Query: 140 EDLMEQMGLKSITDREVCCYMI--SCKNSTNIDTVIDWLVKHSKSK 183
            D  E +       +E+    I  S KN  N++ +   L K  + K
Sbjct: 127 ADQGEALA------KELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166


>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
 pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
          Length = 204

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 17/167 (10%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
           + +L L+G    GKT+ V    TG + +  + T+G  +  +     +G +   +WD  GQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62

Query: 75  PRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F  + +  Y +A  AI+   V     Y N+P    +L  +        IP+++ GNK+
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKV 117

Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
           D      K+  ++   +     + +  Y IS K++ N +    WL +
Sbjct: 118 D-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 159


>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
           Transport Complex
          Length = 216

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 17/167 (10%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
           + +L L+G    GKT+ V    TG + +  + T+G  +  +     +G +   +WD  GQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 75  PRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F  + +  Y +A  AI+   V     Y N+P    +L  +        IP+++ GNK+
Sbjct: 70  EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKV 124

Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
           D      K+  ++   +     + +  Y IS K++ N +    WL +
Sbjct: 125 D-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166


>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
          Length = 189

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 12/164 (7%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
            +L LIG  + GKTS +   A   ++   + TVG  F ++ V + +  IKL  WD  GQ 
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID--K 133
           R+R++   Y R     + + D A+ ++    + +    +   S +   ++++GNK D   
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLED 141

Query: 134 PEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177
              +  ED     G +   D     +  S K + N+  V + LV
Sbjct: 142 ERVVPAED-----GRRLADDLGFEFFEASAKENINVKQVFERLV 180


>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
 pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
          Length = 200

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 6/117 (5%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
           +IG    GK+ L++      + +D   T+G  F  R V  G  T+KL  WD  GQ RFRS
Sbjct: 30  VIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS 89

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID-KPE 135
           +   Y R  +  + V D    +      + L D  +  S N I +++ GNK D  PE
Sbjct: 90  VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN-IVVILCGNKKDLDPE 145


>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
 pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
 pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
 pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
 pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
 pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
 pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
 pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
 pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
 pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
 pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
           Crm1-ran-ranbp1
 pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
           Crm1-Ran-Ranbp1
 pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1- Ran-ranbp1
 pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
           With Crm1- Ran-ranbp1
 pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
           Complex With Crm1-ran-ranbp1
 pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1(k548a)-ran-ranbp1
 pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
           With Crm1(k579a)-ran-ranbp1
 pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1(k548e,k579q)-ran-ranbp1
 pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
 pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With
           Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
 pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
 pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
           Excess Crm1 Inhibitor Leptomycin B
 pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
          Length = 216

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 17/167 (10%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
           + +L L+G    GKT+ V    TG + +  + T+G  +  +     +G +   +WD  GQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 75  PRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F  + +  Y +A  AI+   V     Y N+P    +L  +        IP+++ GNK+
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKV 124

Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
           D      K+  ++   +     + +  Y IS K++ N +    WL +
Sbjct: 125 D-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166


>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
           The Gtp- Bound Conformation: Implications For Nuclear
           Import Complex Assembly Dynamics
 pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
           The Gtp- Bound Conformation: Implications For Nuclear
           Import Complex Assembly Dynamics
          Length = 216

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 17/167 (10%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
           + +L L+G    GKT+ V    TG + +  + T+G  +  +     +G +   +WD  GQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 75  PRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F  + +  Y +A  AI+   V     Y N+P    +L  +        IP+++ GNK+
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKV 124

Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
           D      K+  ++   +     + +  Y IS K++ N +    WL +
Sbjct: 125 D-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166


>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
 pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
 pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
 pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
 pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
          Length = 207

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 7/120 (5%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQP 75
           +++ ++G    GKTSL+N      +S     T+G  F  ++V   +  VT+++WD  G  
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68

Query: 76  RFRSMWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           RF+S+   + R     V V D      +  L   R E     S       P +VLGNKID
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128


>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
 pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
 pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
          Length = 221

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 17/167 (10%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
           + +L L+G    GKT+ V    TG + +  + T+G  +  +     +G +   +WD  GQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74

Query: 75  PRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F  + +  Y +A  AI+   V     Y N+P    +L  +        IP+++ GNK+
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKV 129

Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
           D      K+  ++   +     + +  Y IS K++ N +    WL +
Sbjct: 130 D-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171


>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
          Length = 216

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 17/167 (10%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
           + +L L+G    GKT+ V    TG + +  + T+G  +  +     +G +   +WD  GQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 75  PRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F  + +  Y +A  AI+   V     Y N+P    +L  +        IP+++ GNK+
Sbjct: 70  EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKV 124

Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
           D      K+  ++   +     + +  Y IS K++ N +    WL +
Sbjct: 125 D-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166


>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
 pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
          Length = 216

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 5/119 (4%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGG 73
           ++ +L  +G Q+ GKTSL+       +      T+G +    T       + ++LWD  G
Sbjct: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71

Query: 74  QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             RFRS+   Y R  +A V V D  + ++   +   + D+ ++   + I +LV GNK D
Sbjct: 72  LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV-GNKTD 129


>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
 pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
 pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
 pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
          Length = 170

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 13/166 (7%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
           LIG    GK+ L+       ++   I T+G + +     +    V +++WD  GQ RFR+
Sbjct: 8   LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT 67

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
           +   Y R    I+ V D  D +    +  +    +++ + +   LL++GNK D    +  
Sbjct: 68  ITTAYYRGAXGIILVYDITD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRVVT 126

Query: 140 EDLMEQMGLKSITDREVCCYMI--SCKNSTNIDTVIDWLVKHSKSK 183
            D  E +       +E+    I  S KN  N++ +   L K  + K
Sbjct: 127 ADQGEALA------KELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166


>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
          Length = 188

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGG 73
           ++ +L  +G Q+ GKTSL+       +      T+G +    T       V ++LWD  G
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64

Query: 74  QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             RFRS+   Y R  +  V V D  + ++   +   + D+ ++   + I +LV GNK D
Sbjct: 65  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV-GNKTD 122


>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
 pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
 pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
 pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
           Nucleotide Free Rab21
          Length = 170

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTV--GFNMRKVTKGN--VTIKLWDLGGQP 75
            ++ L+G    GKTSLV       +++  I T+   F  +K+  G   V + +WD  GQ 
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS---ELHDLLSKPSLNGIPLLVLGNKID 132
           RF ++   Y R  +  + V D  D D+    ++   EL  +L     N I L ++GNKID
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKID 122


>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
          Length = 169

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGG 73
           +E+++ L+G    GK+S+V       +  ++ PT+G  F  + V   N   K  +WD  G
Sbjct: 4   RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63

Query: 74  QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133
           Q RFR++   Y R  +A + V D    +      S L + + +   +G P +V+    +K
Sbjct: 64  QERFRALAPMYYRGSAAAIIVYDITKEETF----STLKNWVRELRQHGPPSIVVAIAGNK 119

Query: 134 PEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170
            +     ++ME+                S KN+ NI+
Sbjct: 120 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININ 156


>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
 pdb|3ICQ|C Chain C, Karyopherin Nuclear State
          Length = 171

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQP 75
            +L L+G    GKT+ V    TG + +  I T+G  +  ++     G +   +WD  G  
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64

Query: 76  RFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           +F  + +  Y  A  AI+   V     Y N+P      H  L +   N IP+++ GNK+D
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP----NWHRDLVRVCEN-IPIVLCGNKVD 119

Query: 133 KPEALSKEDLMEQMGLKSIT---DREVCCYMISCKNSTNIDTVIDWLVK 178
             E         ++  K+IT    + +  Y IS K++ N +    WL +
Sbjct: 120 VKE--------RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 160


>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
          Length = 172

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQP 75
            +L L+G    GKT+ V    TG + +  I T+G  +  ++     G +   +WD  G  
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65

Query: 76  RFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           +F  + +  Y  A  AI+   V     Y N+P      H  L +   N IP+++ GNK+D
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP----NWHRDLVRVCEN-IPIVLCGNKVD 120

Query: 133 KPEALSKEDLMEQMGLKSIT---DREVCCYMISCKNSTNIDTVIDWLVK 178
             E         ++  K+IT    + +  Y IS K++ N +    WL +
Sbjct: 121 VKE--------RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 161


>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
 pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
          Length = 216

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 17/167 (10%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
           + +L L+G    GKT+ V    TG + +  + T+G  +  +     +G +   +WD  GQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 75  PRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            ++  + +  Y +A  AI+   V     Y N+P    +L  +        IP+++ GNK+
Sbjct: 70  EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKV 124

Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
           D      K+  ++   +     + +  Y IS K++ N +    WL +
Sbjct: 125 D-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166


>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
 pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
          Length = 184

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 11/116 (9%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTV--GFNMRKVTKGN--VTIKLWDLGGQPRFRS 79
           L+G    GKTSLV       +++  I T+   F  +K+  G   V + +WD  GQ RF +
Sbjct: 25  LLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHA 84

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRS---ELHDLLSKPSLNGIPLLVLGNKID 132
           +   Y R  +  + V D  D D+    ++   EL  +L     N I L ++GNKID
Sbjct: 85  LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKID 136


>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
 pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
           Group
          Length = 168

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75
           +++ ++G    GK+S++     G +++D   T+G +      +V   +V + LWD  GQ 
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 76  RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135
            F ++ + Y R   A V V    D ++     S    ++++  +  IP  ++ NKID   
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE--VGDIPTALVQNKID--- 120

Query: 136 ALSKEDLMEQMGLKSITDR-EVCCYMISCKNSTNIDTVIDWLV-KH 179
            L  +  ++    + +  R ++  Y  S K   N+  V  +L  KH
Sbjct: 121 -LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165


>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
 pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
 pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
          Length = 211

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGG 73
           ++ +L  +G Q+ GKTSL+       +      T+G +    T       V ++LWD  G
Sbjct: 15  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74

Query: 74  QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             RFRS+   Y R  +  V V D  + ++   +   + D+ ++   + I +LV GNK D
Sbjct: 75  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV-GNKTD 132


>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
           Export Complex
 pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
           Export Complex
 pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
           Export Complex (Crystal I)
 pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
           Export Complex (Crystal I)
 pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
           Export Complex (Crystal Ii)
 pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
           Export Complex (Crystal Ii)
          Length = 176

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 17/167 (10%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
           + +L L+G    GKT+ V    TG + +  + T+G  +  +     +G +   +WD  G 
Sbjct: 6   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65

Query: 75  PRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F  + +  Y +A  AI+   V     Y N+P      H  L +   N IP+++ GNK+
Sbjct: 66  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVRVCEN-IPIVLCGNKV 120

Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
           D      K+  ++   +     + +  Y IS K++ N +    WL +
Sbjct: 121 D-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 162


>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
          Length = 182

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 17/167 (10%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
           + +L L+G    GKT+ V    TG + +  + T+G  +  +     +G +   +WD  G 
Sbjct: 12  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 71

Query: 75  PRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F  + +  Y +A  AI+   V     Y N+P      H  L +   N IP+++ GNK+
Sbjct: 72  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVRVCEN-IPIVLCGNKV 126

Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
           D      K+  ++   +     + +  Y IS K++ N +    WL +
Sbjct: 127 D-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 168


>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
           Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
          Length = 219

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 23/169 (13%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQP 75
            +L L+G    GKT+ V    TG + +  I T+G  +  ++     G +   +WD  G  
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72

Query: 76  RFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           +F  + +  Y  A  AI+   V     Y N+P    +L  +        IP+++ GNK+D
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVD 127

Query: 133 KPEALSKEDLMEQMGLKSIT---DREVCCYMISCKNSTNIDTVIDWLVK 178
             E         ++  K+IT    + +  Y IS K++ N +    WL +
Sbjct: 128 VKE--------RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 168


>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
 pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
 pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
 pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
 pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
 pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
 pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
 pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
 pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
          Length = 221

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 17/167 (10%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
           + +L L+G    GKT+ V    TG   +  + T+G  +  +     +G +   +WD  GQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74

Query: 75  PRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F  + +  Y +A  AI+   V     Y N+P    +L  +        IP+++ GNK+
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKV 129

Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
           D      K+  ++   +     + +  Y IS K++ N +    WL +
Sbjct: 130 D-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171


>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
          Length = 169

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 18/171 (10%)

Query: 16  FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
           F    ++ +IG  + GKTS +   A   ++   + TVG  F ++ + + +  IKL  WD 
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 72  GGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            GQ R+R++   Y R     + + D  + ++    + +    +   S +   +L++GNK 
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKC 120

Query: 132 DKPE--ALSKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177
           D  +   +S E    L + +G +         +  S K++ N+    + LV
Sbjct: 121 DMEDERVVSSERGRQLADHLGFE--------FFEASAKDNINVKQTFERLV 163


>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
 pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
 pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
 pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
 pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
           Snurportin1-Rangtp
 pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
           Snurportin1-Rangtp
          Length = 216

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 17/167 (10%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
           + +L L+G    GKT+ V    TG + +  + T+G  +  +     +G +   +WD  G 
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69

Query: 75  PRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F  + +  Y +A  AI+   V     Y N+P    +L  +        IP+++ GNK+
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKV 124

Query: 132 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
           D      K+  ++   +     + +  Y IS K++ N +    WL +
Sbjct: 125 D-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166


>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
          Length = 191

 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 10/142 (7%)

Query: 16  FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDL 71
           F    +L +IG  + GKTS +   A   ++   + TVG + +  T    +  V +++WD 
Sbjct: 20  FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79

Query: 72  GGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            GQ R+R++   Y R     + + D  + ++    + +    +   S +   ++++GNK 
Sbjct: 80  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWATQIKTYSWDNAQVILVGNKC 138

Query: 132 DKPE-----ALSKEDLMEQMGL 148
           D  E         + L EQ+G 
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGF 160


>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
 pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
          Length = 195

 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 29/173 (16%)

Query: 25  IGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-------------VTKGN-VTIKLWD 70
           +G    GKTS++     G ++   I TVG + R+             V +G  + ++LWD
Sbjct: 17  LGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWD 76

Query: 71  LGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
             G  RFRS+   + R     + + D  +  +    R+ +  L          +++ GN 
Sbjct: 77  TAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGN- 135

Query: 131 IDKPEALSKEDLMEQMGLKSITDREVC------CYMISCKNSTNIDTVIDWLV 177
                   K DL +Q  +K    RE+        +  S  N TNI   I+ L+
Sbjct: 136 --------KSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180


>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
 pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
 pdb|2EFD|B Chain B, Ara7ATVPS9A
 pdb|2EFD|D Chain D, Ara7ATVPS9A
 pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
 pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
 pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
 pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
 pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
          Length = 181

 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 14/160 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPR 76
           +L L+G   AGK+SLV       + E    T+G  F  + +   + T+K  +WD  GQ R
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73

Query: 77  FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136
           + S+   Y R  +A + V D  +  +   ++  + +L ++ + N + + + GNK D  +A
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDLLDA 132

Query: 137 --LSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVI 173
             ++ ED       ++        +M  S K +TN+  + 
Sbjct: 133 RKVTAED------AQTYAQENGLFFMETSAKTATNVKEIF 166


>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
          Length = 175

 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRS 79
           +IG    GK+ L++      + +D   T+G  F  + +  G   V +++WD  GQ RFRS
Sbjct: 16  VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 75

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           +   Y R  +  + V D    +      + L D     S N I +++ GNK D
Sbjct: 76  VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN-IVIILCGNKKD 127


>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
 pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
 pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
 pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
 pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
          Length = 186

 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRS 79
           +IG    GK+ L++      + +D   T+G  F  + +  G   V +++WD  GQ RFRS
Sbjct: 15  VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 74

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           +   Y R  +  + V D    +      + L D     S N I +++ GNK D
Sbjct: 75  VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN-IVIILCGNKKD 126


>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
           Structure Of The Small G Protein Rab3a Complexed With
           The Effector Domain Of Rabphilin-3a
          Length = 203

 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 18/174 (10%)

Query: 13  SLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL-- 68
           S  F    ++ +IG  + GKTS +   A   ++   + TVG  F ++ + + +  IKL  
Sbjct: 2   SHXFDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61

Query: 69  WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
           WD  G  R+R++   Y R     +   D  + ++    + +    +   S +   +L++G
Sbjct: 62  WDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVG 120

Query: 129 NKIDKPE--ALSKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177
           NK D  +   +S E    L + +G +         +  S K++ N+    + LV
Sbjct: 121 NKCDXEDERVVSSERGRQLADHLGFE--------FFEASAKDNINVKQTFERLV 166


>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
           The Minimal Rab Binding Domain Of Rabenosyn-5
          Length = 170

 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGG 73
           +E+++ L+G    GK+S++       +  ++ PT+G  F  + V   N   K  +WD  G
Sbjct: 5   RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 64

Query: 74  QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133
             RFR++   Y R  +A + V D    +      S L + + +   +G P +V+    +K
Sbjct: 65  LERFRALAPMYYRGSAAAIIVYDITKEETF----STLKNWVRELRQHGPPSIVVAIAGNK 120

Query: 134 PEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170
            +     ++ME+                S KN+ NI+
Sbjct: 121 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININ 157


>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
          Length = 184

 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 11/116 (9%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
           LIG    GK++L++      ++ +   T+G  F  R +     TIK  +WD  GQ R+R+
Sbjct: 25  LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRA 84

Query: 80  MWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           +   Y R     + V D A    Y+N+     EL D     + + I ++++GNK D
Sbjct: 85  ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD----HADSNIVIMLVGNKSD 136


>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
           With Gdp
 pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
           With Gdp
          Length = 191

 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 11/116 (9%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
           LIG    GK++L++      ++ +   T+G  F  R +     TIK  +WD  GQ R+R+
Sbjct: 34  LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRA 93

Query: 80  MWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           +   Y R     + V D A    Y+N+     EL D     + + I ++++GNK D
Sbjct: 94  ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD----HADSNIVIMLVGNKSD 145


>pdb|2LKC|A Chain A, Free B.St If2-G2
 pdb|2LKD|A Chain A, If2-G2 Gdp Complex
          Length = 178

 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 22  LSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
           ++++G  + GKT+L++ I     +E      T      +VT  +  I   D  G   F +
Sbjct: 11  VTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT 70

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
           M  R  + V+ IV +V AAD   +P +     + ++      +P++V  NK+DKPEA + 
Sbjct: 71  MRARGAQ-VTDIVILVVAADDGVMPQTV----EAINHAKAANVPIIVAINKMDKPEA-NP 124

Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
           + +M+++   ++   E     I CK S      +D L++
Sbjct: 125 DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLE 163


>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
           Pfb0500c
          Length = 208

 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 7/117 (5%)

Query: 63  NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 122
           N+   +WD  GQ R+ S+   Y R  +  + V D ++ + L  +++ ++ L  K S N I
Sbjct: 92  NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL--KISSNYI 149

Query: 123 PLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179
            +LV  NKIDK +   + D++E    K   D  +     S K  TNI  +   L + 
Sbjct: 150 IILV-ANKIDKNKF--QVDILEVQ--KYAQDNNLLFIQTSAKTGTNIKNIFYMLAEE 201


>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
 pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
          Length = 217

 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/172 (19%), Positives = 71/172 (41%), Gaps = 17/172 (9%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV-----TKG---------NVT 65
           ++L  +G    GKT+ +       ++   I TVG + R+       +G          V 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 66  IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 125
           ++LWD  GQ RFRS+   + R     + + D     +    R+ +  L +        ++
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145

Query: 126 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177
           ++GNK D P+   + ++ E+   +      +  +  S     N++  ++ L+
Sbjct: 146 LIGNKADLPD---QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 194


>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
 pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
          Length = 199

 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 11/116 (9%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
           LIG    GK++L++      ++ +   T+G  F  R +     TIK  +WD  GQ R+R 
Sbjct: 10  LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR 69

Query: 80  MWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           +   Y R     + V D A    Y+N+     EL D     + + I ++++GNK D
Sbjct: 70  ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD----HADSNIVIMLVGNKSD 121


>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
          Length = 179

 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 11/116 (9%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMR--KVTKGNVTIKLWDLGGQPRFRS 79
           +IG    GK+ L++      +  D   T+G  F  R  +V+   + +++WD  GQ RFR+
Sbjct: 20  IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 79

Query: 80  MWERYCRAVSAIVYVVD---AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           +   Y R  +  + V D    + Y++L    ++  +L +  ++    ++++GNK D
Sbjct: 80  VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV----IILIGNKAD 131


>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
 pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
 pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
 pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
          Length = 174

 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 8/151 (5%)

Query: 24  LIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGNVTIKL--WDLGGQPRFRS 79
           +IG    GK+ L+       +    D+   V F  R +T     IKL  WD  GQ  FRS
Sbjct: 15  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRS 74

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
           +   Y R  +  + V D    D      + L D     + N + +L+ GNK D     S+
Sbjct: 75  ITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLI-GNKSDLE---SR 130

Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNID 170
            ++ ++ G     +  +     S K ++N++
Sbjct: 131 REVKKEEGEAFAREHGLIFMETSAKTASNVE 161


>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
          Length = 196

 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 11/116 (9%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMR--KVTKGNVTIKLWDLGGQPRFRS 79
           +IG    GK+ L++      +  D   T+G  F  R  +V+   + +++WD  GQ RFR+
Sbjct: 35  IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRA 94

Query: 80  MWERYCRAVSAIVYVVD---AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           +   Y R  +  + V D    + Y++L    ++  +L +  ++    ++++GNK D
Sbjct: 95  VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV----IILIGNKAD 146


>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
          Length = 191

 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 60/151 (39%), Gaps = 8/151 (5%)

Query: 24  LIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGNVTIKL--WDLGGQPRFRS 79
           +IG    GK+ L+       +    D+   V F  R V      IKL  WD  GQ  FRS
Sbjct: 26  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS 85

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139
           +   Y R  +  + V D    +      S L D     S N + +L+ GNK D     S+
Sbjct: 86  ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLI-GNKSDLE---SR 141

Query: 140 EDLMEQMGLKSITDREVCCYMISCKNSTNID 170
            D+  + G     +  +     S K + N++
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVE 172


>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
           Rhod
          Length = 214

 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 14/143 (9%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQ 74
           + +++ L+G    GKTSL+ V A G + E   PTV   + +    KG  V + +WD  GQ
Sbjct: 33  RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92

Query: 75  PRFRSMWERYCRAVSAIVYVVDAA---DYDNLPVSR--SELHDLLSKPSLNGIPLLVLGN 129
             +  +   +    S ++   D      +DN+  +R   E++    K     +P++V+G 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNI-FNRWYPEVNHFCKK-----VPIIVVGC 146

Query: 130 KIDKPEALSKEDLMEQMGLKSIT 152
           K D  +  S  + + + GL+ +T
Sbjct: 147 KTDLRKDKSLVNKLRRNGLEPVT 169


>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
          Length = 201

 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 4/116 (3%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT---KGNVTIKLWDLGGQPRFRSM 80
           ++G +  GKTSL +    G +SE   PTV     K+    K    + L D  GQ  +  +
Sbjct: 29  ILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL 88

Query: 81  WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID-KPE 135
              +   V   V V       +  V  S    L        +P++++GNK D  PE
Sbjct: 89  PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144


>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
           In Its Active Conformation: Significance For Effector
           Protein Binding
          Length = 174

 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 23/172 (13%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQPRFRSM 80
           ++G    GK++L        + ED  PT   + RK  V  G  V I + D  G   + ++
Sbjct: 8   MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAI 67

Query: 81  WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS-KPSLNGIPLLVLGNKID------- 132
            + Y R+    + V    ++++   +      +L  K   + IPLLV+GNK D       
Sbjct: 68  RDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQV 127

Query: 133 -KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
              EA SK    E+ G++ +          S K   N+D V   L++  ++K
Sbjct: 128 PVEEARSK---AEEWGVQYVE--------TSAKTRANVDKVFFDLMREIRTK 168


>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
          Length = 178

 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 23/172 (13%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQPRFRSM 80
           ++G    GK++L        + ED  PT   + RK  V  G  V I + D  G   + ++
Sbjct: 12  MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAI 71

Query: 81  WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS-KPSLNGIPLLVLGNKID------- 132
            + Y R+    + V    ++++   +      +L  K   + IPLLV+GNK D       
Sbjct: 72  RDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQV 131

Query: 133 -KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
              EA SK    E+ G++ +          S K   N+D V   L++  ++K
Sbjct: 132 PVEEARSK---AEEWGVQYVE--------TSAKTRANVDKVFFDLMREIRTK 172


>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
           Inorganic Phosphate
 pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
           Inorganic Phosphate
          Length = 172

 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 6/123 (4%)

Query: 22  LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT---KGNVTIKLWDLGGQPRFR 78
           +++ G    GK+SLV     G + E  IPTV    R+V    K   T+++ D  G  +F 
Sbjct: 6   VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP 65

Query: 79  SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS-KPSLNGIPLLVLGNKIDKPEAL 137
           +M         A + V       +L   +     +   K  +  IP++++GNK D  E+ 
Sbjct: 66  AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD--ESP 123

Query: 138 SKE 140
           S+E
Sbjct: 124 SRE 126


>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
           Monoclinic Space Group
 pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
           Monoclinic Space Group
          Length = 200

 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 14/130 (10%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV-----TKG---------NVT 65
           ++L  +G    GKT+ +       ++   I TVG + R+      T+G          V 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71

Query: 66  IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 125
           ++LWD  G  RFRS+   + R     + + D     +    R+ +  L +        ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131

Query: 126 VLGNKIDKPE 135
           ++GNK D P+
Sbjct: 132 LIGNKADLPD 141


>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
           Central Rab Binding Domain Of Rabenosyn-5
 pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
           Central Rab Binding Domain Of Rabenosyn-5
          Length = 172

 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 5/113 (4%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRS 79
           +IG    GK+ L++      + +D   T+G  F  + +  G   V +++WD  G  RFRS
Sbjct: 13  VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRS 72

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           +   Y R  +  + V D    +      + L D     S N I +++ GNK D
Sbjct: 73  VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN-IVIILCGNKKD 124


>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
          Length = 184

 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 11/155 (7%)

Query: 13  SLFFK-QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG-FNMRKVTKGNVTIKL-W 69
           +L+F+  E+++ ++G  ++GK++LV+   TG Y ++  P  G F    V  G   + L  
Sbjct: 13  NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIR 72

Query: 70  DLGGQPRFR-SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 128
           D GG P  + + W      V A+V+V    D  +     +    L S  + + +P++++G
Sbjct: 73  DEGGPPELQFAAW------VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVG 126

Query: 129 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 163
            + D   A +   + +    K  TD + C Y  +C
Sbjct: 127 TQ-DAISAANPRVIDDSRARKLSTDLKRCTYYETC 160


>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
 pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
 pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
          Length = 172

 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 11/116 (9%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
           LIG    GK++L++      ++ +   T+G  F  R +     TIK  +WD  G  R+R+
Sbjct: 13  LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 72

Query: 80  MWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           +   Y R     + V D A    Y+N+     EL D     + + I ++++GNK D
Sbjct: 73  ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD----HADSNIVIMLVGNKSD 124


>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
           Monoclinic Space Group
 pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
           Monoclinic Space Group
 pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
           Monoclinic Space Group
 pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
           Monoclinic Space Group
          Length = 220

 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 14/130 (10%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV-----TKG---------NVT 65
           ++L  +G    GKT+ +       ++   I TVG + R+      T+G          V 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71

Query: 66  IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 125
           ++LWD  G  RFRS+   + R     + + D     +    R+ +  L +        ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131

Query: 126 VLGNKIDKPE 135
           ++GNK D P+
Sbjct: 132 LIGNKADLPD 141


>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
          Length = 223

 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 30/177 (16%)

Query: 14  LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMR--KVTKGNVTIKLW 69
           L FK    + LIG    GK++L++      ++ D   T+G  F  R  ++    +  ++W
Sbjct: 12  LLFK----IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIW 67

Query: 70  DLGGQPRFRSMWERYCR-AVSA-IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 126
           D  GQ R+R++   Y R AV A IVY +  ++ Y+N     SEL +     + + + + +
Sbjct: 68  DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE----NADDNVAVGL 123

Query: 127 LGNKID------KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177
           +GNK D       P   SK    E   L + T         S  NS N+D   + L+
Sbjct: 124 IGNKSDLAHLRAVPTEESKTFAQENQLLFTET---------SALNSENVDKAFEELI 171


>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
           Hexagonal Space Group
 pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
           Hexagonal Space Group
          Length = 195

 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/172 (19%), Positives = 69/172 (40%), Gaps = 17/172 (9%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV-----TKG---------NVT 65
           ++L  +G    GKT+ +       ++   I TVG + R+      T+G          V 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71

Query: 66  IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 125
           ++LWD  G  RFRS+   + R     +   D     +    R+    L +        ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131

Query: 126 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177
           ++GNK D P+   + ++ E+   +      +  +  S     N++  ++ L+
Sbjct: 132 LIGNKADLPD---QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180


>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
           Complex With Gdp
 pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
           Complex With Gdp
 pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
           Complex With Gdp
 pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
           Complex With Gdp
 pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
           Complex With Gdp
          Length = 181

 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 12/121 (9%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVT-KGNVTIK--LWDLGGQ 74
            ++ LIG    GK++L++      ++ +   T+G  F  + +  K N  IK  +WD  GQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67

Query: 75  PRFRSMWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            R+R++   Y R     + V D      ++N+     EL D     + + I +L++GNK 
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRD----NADSNIVILLVGNKS 123

Query: 132 D 132
           D
Sbjct: 124 D 124


>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
 pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
          Length = 535

 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 28/176 (15%)

Query: 13  SLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIK----- 67
           +L   QE+++ LIG   AGKTSL+  +    +      T G N+  VTK    IK     
Sbjct: 35  ALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNV--VTKQAPNIKGLEND 92

Query: 68  ---------LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS 118
                     WD GGQ    +  + +    S  + ++D+        + S  H  L    
Sbjct: 93  DELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR-------TDSNKHYWLRHIE 145

Query: 119 LNG--IPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172
             G   P++V+ NKID+  + + E         +I +R    + ISCKN   ++++
Sbjct: 146 KYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENR---FHRISCKNGDGVESI 198


>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
           With Gtpgammas
 pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
           With Gdp And Pi
          Length = 191

 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 11/116 (9%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
           LIG    GK++L++      ++ +   T+G  F  R +     TIK  +WD  G  R+R+
Sbjct: 34  LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 93

Query: 80  MWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           +   Y R     + V D A    Y+N+     EL D     + + I ++++GNK D
Sbjct: 94  ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD----HADSNIVIMLVGNKSD 145


>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
          Active Gtp Bound State
 pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
          Active Gtp Bound State
          Length = 198

 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
          +L L+G    GKT+++ V+A   Y E  +PTV  N     +  +  V + LWD  G P +
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72


>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
           Complex With Galpha(13):galpha(i1) Chimera
 pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
           Complex With Galpha(13):galpha(i1) Chimera
          Length = 340

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 50  PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL 103
           PT G +    T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQV 219


>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
 pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
          Length = 180

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 12/137 (8%)

Query: 25  IGLQNAGKTSLVNVIATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQP---RFR 78
           +G    GKT ++    +  +  D +PTV   F+   V  GN V + LWD  GQ    R R
Sbjct: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLR 71

Query: 79  SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138
            +  R          ++  A Y+N  V++  + +L  +    G+P++++G K+D  +   
Sbjct: 72  PLSYRGADVFILAFSLISKASYEN--VAKKWIPEL--RHYAPGVPIILVGTKLDLRD--D 125

Query: 139 KEDLMEQMGLKSITDRE 155
           K+  ++  G   IT  +
Sbjct: 126 KQFFIDHPGAVPITTNQ 142


>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
           Alf4 And Gdp
 pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
           Gppnhp
          Length = 353

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           +PT G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 178 VPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237

Query: 109 ELH 111
           E++
Sbjct: 238 EMN 240


>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
           With The Slp Homology Domain Of Slac2-AMELANOPHILIN
 pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
           With The Slp Homology Domain Of Slac2-AMELANOPHILIN
          Length = 203

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/172 (19%), Positives = 69/172 (40%), Gaps = 17/172 (9%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV-----TKG---------NVT 65
           ++L  +G    GKT+ +       ++   I TVG + R+      T+G          V 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71

Query: 66  IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 125
           ++LWD  G  RFRS+   + R     +   D     +    R+    L +        ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131

Query: 126 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177
           ++GNK D P+   + ++ E+   +      +  +  S     N++  ++ L+
Sbjct: 132 LIGNKADLPD---QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180


>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
          With Rnd1 Gtpase
 pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
          With Rnd1 Gtpase
          Length = 197

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
          +L L+G    GKT+++ V+A   Y E  +PTV  N     +  +  V + LWD  G P +
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71


>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
          Length = 214

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
          +L L+G    GKT+++ V+A   Y E  +PTV  N     +  +  V + LWD  G P +
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88


>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
           Binding Domain
 pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
           Binding Domain
          Length = 167

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 11/116 (9%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
           LIG    GK++L++      ++ +   T+G  F  R +     TIK  +WD  G  R+R+
Sbjct: 10  LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 69

Query: 80  MWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           +   Y R     + V D A    Y+N+     EL D     + + I + ++GNK D
Sbjct: 70  ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD----HADSNIVIXLVGNKSD 121


>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
 pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
 pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
           Interacting Protein 2
          Length = 173

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 11/116 (9%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
           LIG    GK++L++      ++ +   T+G  F  R +     TIK  +WD  G  R+R+
Sbjct: 16  LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 75

Query: 80  MWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           +   Y R     + V D A    Y+N+     EL D     + + I + ++GNK D
Sbjct: 76  ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD----HADSNIVIXLVGNKSD 127


>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
 pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
          Length = 180

 Score = 39.3 bits (90), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 22/170 (12%)

Query: 25  IGLQNAGKTSLVNVIATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQP---RFR 78
           +G    GKT ++       +  D +PTV   F+   V  G+ V + LWD  GQ    R R
Sbjct: 12  VGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71

Query: 79  SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138
            +  R          ++  A Y+N  + +  L +L  K    GIP++++G K+D  +   
Sbjct: 72  PLSYRGADVFLLAFSLISKASYEN--IHKKWLPEL--KHYAPGIPIVLVGTKLDLRD--D 125

Query: 139 KEDLMEQMGLKSITDRE----------VCCYMISCKNSTNIDTVIDWLVK 178
           K+ L +  G  SIT  +          V     S K   N+  V D  ++
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIR 175


>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
           Novel Type Of Action Of A Bacterial Exoenzyme
 pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
           Novel Type Of Action Of A Bacterial Exoenzyme
          Length = 187

 Score = 39.3 bits (90), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 14/167 (8%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQPRFRSM 80
           ++G    GK++L        + ED  PT   + RK  V  G  V I + D  GQ  + ++
Sbjct: 23  MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 82

Query: 81  WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
            + Y R+    + V    + ++   +      +L       +P L++GNK D  +     
Sbjct: 83  RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK---- 138

Query: 141 DLMEQMGLKSITDR----EVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
               Q+ ++   +R     V     S K   N+D V   L++  +++
Sbjct: 139 ---RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182


>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
           Domain Complex
 pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
           Domain Complex
          Length = 175

 Score = 39.3 bits (90), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 14/167 (8%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQPRFRSM 80
           ++G    GK++L        + ED  PT   + RK  V  G  V I + D  GQ  + ++
Sbjct: 11  MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 70

Query: 81  WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
            + Y R+    + V    + ++   +      +L       +P L++GNK D  +     
Sbjct: 71  RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK---- 126

Query: 141 DLMEQMGLKSITDR----EVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
               Q+ ++   +R     V     S K   N+D V   L++  +++
Sbjct: 127 ---RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170


>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
           Encephalitozoon Cuniculi Bound To Gdp-Mg2+
 pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
           Encephalitozoon Cuniculi Bound To Gdp-Mg2+
          Length = 218

 Score = 39.3 bits (90), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 23/168 (13%)

Query: 12  RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNV-TI 66
           R L +K    + LIG    GKT+ +N +  G + ++   TVG     VT    +GNV   
Sbjct: 8   RELTYK----ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKF 63

Query: 67  KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY---DNLPVSRSELHDLLSKPSLNGIP 123
            +WD  GQ +   + + Y    S  +   D        NL     E   ++     N  P
Sbjct: 64  NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG----NEAP 119

Query: 124 LLVLGNKID--KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169
           ++V  NKID    + +SK+ +ME +  K+        + IS K + N 
Sbjct: 120 IVVCANKIDIKNRQKISKKLVMEVLKGKNYE-----YFEISAKTAHNF 162


>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
           Novel Binding Sites That Are Also Present In Ras And Rap
 pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
           Novel Binding Sites That Are Also Present In Ras And Rap
 pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
           Novel Binding Sites That Are Also Present In Ras And Rap
 pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
           Novel Binding Sites That Are Also Present In Ras And Rap
 pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
           Novel Binding Sites That Are Also Present In Ras And Rap
 pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
           Novel Binding Sites That Are Also Present In Ras And Rap
          Length = 168

 Score = 39.3 bits (90), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 14/167 (8%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQPRFRSM 80
           ++G    GK++L        + ED  PT   + RK  V  G  V I + D  GQ  + ++
Sbjct: 9   MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 68

Query: 81  WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
            + Y R+    + V    + ++   +      +L       +P L++GNK D  +     
Sbjct: 69  RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK---- 124

Query: 141 DLMEQMGLKSITDR----EVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
               Q+ ++   +R     V     S K   N+D V   L++  +++
Sbjct: 125 ---RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168


>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
 pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
 pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
          Length = 185

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 26/171 (15%)

Query: 20  MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQP 75
            ++ LIG    GK++L++   T  ++ +   T+G  F  R +   N  IK  +WD  G  
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70

Query: 76  RFRSMWERYCR-AVSA-IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           R+R++   Y R AV A IVY +  ++ Y+N     +EL +     + + + + ++GNK D
Sbjct: 71  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRE----NADDNVAVGLIGNKSD 126

Query: 133 ------KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177
                  P   +K   ME   L + T         S  NS N+D     L+
Sbjct: 127 LAHLRAVPTDEAKNFAMENQMLFTET---------SALNSDNVDKAFRELI 168


>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
           Botulinum C3 Exoenzyme By Rala Gtpase
          Length = 206

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 14/167 (8%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQPRFRSM 80
           ++G    GK++L        + ED  PT   + RK  V  G  V I + D  GQ  + ++
Sbjct: 19  MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 78

Query: 81  WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
            + Y R+    + V    + ++   +      +L       +P L++GNK D  +     
Sbjct: 79  RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK---- 134

Query: 141 DLMEQMGLKSITDR----EVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
               Q+ ++   +R     V     S K   N+D V   L++  +++
Sbjct: 135 ---RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178


>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
 pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
          Length = 167

 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 9/121 (7%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           +E +L ++G    GK++L      G + E   PT+  + RK   V      +++ D  G 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61

Query: 75  PRFRSMWERYCRAVS--AIVYVVDA-ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F +M + Y +     A+VY + A + +++L   R +   +L     + +P++++GNK 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQ---ILRVKDTDDVPMILVGNKC 118

Query: 132 D 132
           D
Sbjct: 119 D 119


>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
          Length = 169

 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 9/121 (7%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           +E +L ++G    GK++L      G + E   PT+  + RK   V      +++ D  G 
Sbjct: 4   REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 63

Query: 75  PRFRSMWERYCRAVS--AIVYVVDA-ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F +M + Y +     A+VY + A + +++L   R +   +L     + +P++++GNK 
Sbjct: 64  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQ---ILRVKDTDDVPMILVGNKC 120

Query: 132 D 132
           D
Sbjct: 121 D 121


>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A
          Rock-i:rhoe Complex Structure
 pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A
          Rock-i:rhoe Complex Structure
          Length = 200

 Score = 37.7 bits (86), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
          ++ ++G    GKT+L++V A   + E+ +PTV  N     ++    + + LWD  G P +
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 84


>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
           And Inhibit Sos-Mediated Nucleotide Exchange Activity
 pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
           And Inhibit Sos-Mediated Nucleotide Exchange Activity
 pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
           And Inhibit Sos-Mediated Nucleotide Exchange Activity
 pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
           And Inhibit Sos-Mediated Nucleotide Exchange Activity
          Length = 189

 Score = 37.7 bits (86), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 64/143 (44%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 4   EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +        +P++++GNK D
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED---VPMVLVGNKCD 120

Query: 133 KP----EALSKEDLMEQMGLKSI 151
            P    +    +DL    G+  I
Sbjct: 121 LPSRTVDTKQAQDLARSYGIPFI 143


>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
           Molecular Basis For Their Inability To Function As
           Signal Switch Molecules
          Length = 166

 Score = 37.7 bits (86), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 68/143 (47%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G +  GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
          Length = 184

 Score = 37.7 bits (86), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQP 75
          + ++ ++G    GKT+L++V A   + E+ +PTV  N     ++    + + LWD  G P
Sbjct: 7  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 66

Query: 76 RF 77
           +
Sbjct: 67 YY 68


>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
           Binding-Domain Of C-Raf1 Kinase (Rafrbd)
          Length = 167

 Score = 37.7 bits (86), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 9/121 (7%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           +E +L ++G    GK++L      G + E   PT+  + RK   V      +++ D  G 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61

Query: 75  PRFRSMWERYCRAVS--AIVYVVDA-ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F +M + Y +     A+VY + A + +++L   R +   +L       +P++++GNK 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQ---ILRVKDTEDVPMILVGNKC 118

Query: 132 D 132
           D
Sbjct: 119 D 119


>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
           Transforming And A Nontransforming Gly-12 Mutant Of
           P21-H-Ras
          Length = 166

 Score = 37.4 bits (85), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
          Constitutively Activated Small G Protein
 pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
          Constitutively Activated Small G Protein
          Length = 205

 Score = 37.4 bits (85), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
          ++ ++G    GKT+L++V A   + E+ +PTV  N     ++    + + LWD  G P +
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89


>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
           Complexed With Gppnhp And The Ras-Binding-Domain Of
           Human C-Raf1, Residues 51-131
 pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
          Length = 167

 Score = 37.4 bits (85), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 9/121 (7%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           +E +L ++G    GK++L      G + ++  PT+  + RK   V      +++ D  G 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61

Query: 75  PRFRSMWERYCRAVS--AIVYVVDA-ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
            +F +M + Y +     A+VY + A + +++L   R +   +L       +P++++GNK 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQ---ILRVKDTEDVPMILVGNKC 118

Query: 132 D 132
           D
Sbjct: 119 D 119


>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
 pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
           Complex With Signal Recognition Particle (Srp) And
           Ribosome Nascent Chain Complex
          Length = 214

 Score = 37.0 bits (84), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIP-TVGFNMRKV--TKGNVTIKLWDLGGQPRFR-S 79
            +GL ++GKT L   + TG Y +     T    + KV   +GN ++ L DL G    R  
Sbjct: 12  FVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGN-SLTLIDLPGHESLRFQ 70

Query: 80  MWERYCRAVSAIVYVVDAADYDNLPVSRSEL--HDLLSKPSLNGIP-LLVLGNKIDKPEA 136
           + +R+  +  A+V+VVD+A +       +E     L+   +L   P LL+  NK D   A
Sbjct: 71  LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130

Query: 137 LSKEDLMEQM 146
            S + + +Q+
Sbjct: 131 KSAKLIQQQL 140


>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
           Inhibit Sos- Mediated Activation
          Length = 170

 Score = 37.0 bits (84), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 21/170 (12%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 4   EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +        +P++++GNK D
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED---VPMVLVGNKSD 120

Query: 133 KP----EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
            P    +    +DL    G+  I          S K    +D     LV+
Sbjct: 121 LPSRTVDTKQAQDLARSYGIPFIE--------TSAKTRQGVDDAFYTLVR 162


>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
 pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
 pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
          Length = 187

 Score = 37.0 bits (84), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 14/149 (9%)

Query: 11  LRSLFFK-QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTI 66
           + +L+F+ Q ++  ++G    GKT L+    T  +S + IPTV  N      V    V +
Sbjct: 4   MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNL 63

Query: 67  KLWDLGGQP---RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 123
            LWD  GQ    R R +             +V  A ++N+   R++ +  +     N  P
Sbjct: 64  GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEVRHHCPN-TP 119

Query: 124 LLVLGNKIDKPEALSKEDLMEQMGLKSIT 152
           ++++G K+D       +D +E++  K +T
Sbjct: 120 IILVGTKLD---LRDDKDTIEKLKEKKLT 145


>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
           Gtp
 pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
           Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
           Manganese
 pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
           Laue Method: Improvement Of Crystal Quality And
           Monitoring Of The Gtpase Reaction At Different Time
           Points
 pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
           Laue Method: Improvement Of Crystal Quality And
           Monitoring Of The Gtpase Reaction At Different Time
           Points
 pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
           Transforming And A Nontransforming Glycine-12 Mutant Of
           P21h-Ras
          Length = 166

 Score = 36.6 bits (83), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +      + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS---DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
           Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
           Magnesium
 pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
           Laue Method: Improvement Of Crystal Quality And
           Monitoring Of The Gtpase Reaction At Different Time
           Points
          Length = 166

 Score = 36.6 bits (83), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +      + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS---DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAGRTVESRQAQDLARSYGIPYI 142


>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
           Arabidopsis Thaliana
 pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
           Arabidopsis Thaliana
 pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
           Arabidopsis Thaliana
          Length = 354

 Score = 36.6 bits (83), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 14/104 (13%)

Query: 39  IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98
           + T G  E     VG N     K     +L+D+GGQ   R  W      V+A+++    +
Sbjct: 162 VRTTGVVEIQFSPVGEN----KKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217

Query: 99  DYD---------NLPVSRSELHD-LLSKPSLNGIPLLVLGNKID 132
           +YD         N  +   EL D +L +P       ++  NK D
Sbjct: 218 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261


>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
           For The Rgs14 Goloco Motif.
 pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
           For The Rgs14 Goloco Motif
          Length = 328

 Score = 36.6 bits (83), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 153 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 212

Query: 109 ELH 111
           E++
Sbjct: 213 EMN 215


>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
           Provides Insight Into Guanine Nucleotide Exchange
 pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
           Provides Insight Into Guanine Nucleotide Exchange
 pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
           Provides Insight Into Guanine Nucleotide Exchange
 pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
           Provides Insight Into Guanine Nucleotide Exchange
          Length = 329

 Score = 36.6 bits (83), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 154 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 213

Query: 109 ELH 111
           E++
Sbjct: 214 EMN 216


>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
           Helical Peptide Derived From The Goloco Motif Of Rgs14
 pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
           Helical Peptide Derived From The Goloco Motif Of Rgs14
          Length = 327

 Score = 36.6 bits (83), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 152 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 211

Query: 109 ELHDL 113
           E++ +
Sbjct: 212 EMNRM 216


>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
 pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
 pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
 pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
          Length = 330

 Score = 36.6 bits (83), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 155 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 214

Query: 109 ELH 111
           E++
Sbjct: 215 EMN 217


>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
           Rgs1 And Activated Gi Alpha 1
 pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
           Rgs1 And Activated Gi Alpha 1
          Length = 323

 Score = 36.6 bits (83), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 148 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 207

Query: 109 ELH 111
           E++
Sbjct: 208 EMN 210


>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
           Mutant I56cQ333C
          Length = 354

 Score = 36.2 bits (82), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 179 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 238

Query: 109 ELH 111
           E++
Sbjct: 239 EMN 241


>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
           Activated State
 pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
           Activated State
 pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
           Activated State
          Length = 325

 Score = 36.2 bits (82), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 150 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209

Query: 109 ELH 111
           E++
Sbjct: 210 EMN 212


>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
           Rgs16 And Activated Gi Alpha 1
 pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
           Rgs16 And Activated Gi Alpha 1
          Length = 324

 Score = 36.2 bits (82), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 149 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 208

Query: 109 ELH 111
           E++
Sbjct: 209 EMN 211


>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
           Motif Of Rgs14
 pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
           Motif Of Rgs14
 pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
           Motif Of Rgs14
 pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
           Motif Of Rgs14
          Length = 325

 Score = 36.2 bits (82), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 150 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209

Query: 109 ELH 111
           E++
Sbjct: 210 EMN 212


>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
           State-selective Peptide: Minimal Determinants For
           Recognizing The Active Form Of A G Protein Alpha Subunit
 pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
           State-selective Peptide: Minimal Determinants For
           Recognizing The Active Form Of A G Protein Alpha Subunit
          Length = 313

 Score = 36.2 bits (82), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 147 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 206

Query: 109 ELHDL 113
           E++ +
Sbjct: 207 EMNRM 211


>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
           Activated State: G42r Bound To Rgs14 Goloco
 pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
           Activated State: G42r Bound To Rgs14 Goloco
          Length = 328

 Score = 36.2 bits (82), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 153 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 212

Query: 109 ELHDL 113
           E++ +
Sbjct: 213 EMNRM 217


>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
           Bound
 pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
 pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
 pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
           Complexed With A Gtp Analogue
 pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
 pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
           By Gtp Hydrolysis
 pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
           Mechanism Of Gtp Hydrolysis
 pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
           Mechanism Of Gtp Hydrolysis
          Length = 353

 Score = 36.2 bits (82), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237

Query: 109 ELH 111
           E++
Sbjct: 238 EMN 240


>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
 pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
 pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
          Length = 353

 Score = 36.2 bits (82), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237

Query: 109 ELH 111
           E++
Sbjct: 238 EMN 240


>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
 pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
 pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
 pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
 pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
 pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
 pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
 pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
          Length = 330

 Score = 36.2 bits (82), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 155 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 214

Query: 109 ELHDL 113
           E++ +
Sbjct: 215 EMNRM 219


>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
 pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
 pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
 pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
          Length = 330

 Score = 36.2 bits (82), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 155 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 214

Query: 109 ELH 111
           E++
Sbjct: 215 EMN 217


>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
 pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
          Length = 360

 Score = 36.2 bits (82), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 185 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 244

Query: 109 ELHDL 113
           E++ +
Sbjct: 245 EMNRM 249


>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
           Rgs10 And Activated Gi Alpha 3
          Length = 323

 Score = 36.2 bits (82), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 148 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 207

Query: 109 ELHDL 113
           E++ +
Sbjct: 208 EMNRM 212


>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
          Length = 315

 Score = 36.2 bits (82), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 148 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 207

Query: 109 ELHDL 113
           E++ +
Sbjct: 208 EMNRM 212


>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
           To Alf4 And Gdp
 pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
           To Gdp
 pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
           To Gdp
          Length = 356

 Score = 36.2 bits (82), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 181 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 240

Query: 109 ELH 111
           E++
Sbjct: 241 EMN 243


>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
           Rgs8 And Activated Gi Alpha 3
 pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
           Rgs8 And Activated Gi Alpha 3
 pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
           ( Gnai3) In Complex With An Engineered Regulator Of G-
           Protein Signaling Type 2 Domain (Rgs2)
          Length = 350

 Score = 35.8 bits (81), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 178 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237

Query: 109 ELHDL 113
           E++ +
Sbjct: 238 EMNRM 242


>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
 pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
           Gppnhp
 pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
          Length = 177

 Score = 35.8 bits (81), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRF 77
           +++++G ++ GK+SL      G + +   PT+     K+   N     ++L D  GQ  +
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 67

Query: 78  RSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
               + Y   ++   +VY V     ++ + V   +L D++ K     IP++++GNK D
Sbjct: 68  SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKD 122


>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
          Length = 201

 Score = 35.8 bits (81), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 24 LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSM 80
          L+G    GKTSLV    T GY  + IPT   N   V   +   V ++L D  GQ  F  +
Sbjct: 25 LVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL 84


>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
           With Pde6d
          Length = 181

 Score = 35.8 bits (81), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRF 77
           +++++G ++ GK+SL      G + +   PT+     K+   N     ++L D  GQ  +
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 67

Query: 78  RSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
               + Y   ++   +VY V     ++ + V   +L D++ K     IP++++GNK D
Sbjct: 68  SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKD 122


>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
           Complex With The Active Rala
 pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
           Complex With The Active Rala
 pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
           Complex With The Active Rala
 pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
           Complex With The Active Rala
          Length = 175

 Score = 35.8 bits (81), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 14/167 (8%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQPRFRSM 80
           ++G    GK++L        + ED  PT   + RK  V  G  V I + D  G   + ++
Sbjct: 11  MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAI 70

Query: 81  WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 140
            + Y R+    + V    + ++   +      +L       +P L++GNK D  +     
Sbjct: 71  RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK---- 126

Query: 141 DLMEQMGLKSITDR----EVCCYMISCKNSTNIDTVIDWLVKHSKSK 183
               Q+ ++   +R     V     S K   N+D V   L++  +++
Sbjct: 127 ---RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170


>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
           Saccharomyces Cerevisiae
 pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
           Saccharomyces Cerevisiae
 pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
           Saccharomyces Cerevisiae
          Length = 188

 Score = 35.8 bits (81), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 10/141 (7%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V + G + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71

Query: 78  RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN---GIPLLVLGNKIDKP 134
             +        S +V +  + D   LP S   + +      L+   G+P++++G K+D  
Sbjct: 72  DRL-RPLSYPDSNVVLICFSID---LPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLR 127

Query: 135 EALSKEDLMEQMGLKSITDRE 155
                 + + Q G + +T +E
Sbjct: 128 NDPQTIEQLRQEGQQPVTSQE 148


>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
           Forms
 pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
           Forms
          Length = 167

 Score = 35.8 bits (81), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRF 77
           +++++G ++ GK+SL      G + +   PT+     K+   N     ++L D  GQ  +
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 65

Query: 78  RSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
               + Y   ++   +VY V     ++ + V   +L D++ K     IP++++GNK D
Sbjct: 66  SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKD 120


>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
          Length = 169

 Score = 35.8 bits (81), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRF 77
           +++++G ++ GK+SL      G + +   PT+     K+   N     ++L D  GQ  +
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62

Query: 78  RSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
               + Y   ++   +VY V     ++ + V   +L D++ K     IP++++GNK D
Sbjct: 63  SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKD 117


>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
           With Galpha-13 Bound To Gdp-Alf4
 pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
           With Galpha-13 Bound To Gtp-Gamma-S
          Length = 338

 Score = 35.8 bits (81), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 20/147 (13%)

Query: 50  PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 109
           PT G +       NV  K+ D+GGQ   R  W     +V++I+++V ++++D + +   +
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222

Query: 110 LHDLLSKPSLNGIPLLVLGNKIDKPEA----LSKEDLMEQ-MGLKSITD----------- 153
            + L    SLN I   ++ N++    +    L+K DL+E+ + + SI D           
Sbjct: 223 TNRLTE--SLN-IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHC 279

Query: 154 -REVCCYMISCKNSTNIDTVIDWLVKH 179
            R+V  +++ C      D     L  H
Sbjct: 280 LRDVQKFLVECFRGKRRDQQQRPLYHH 306


>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
 pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
           G Alpha 13
 pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
           G Alpha 13
          Length = 362

 Score = 35.4 bits (80), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 20/147 (13%)

Query: 50  PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 109
           PT G +       NV  K+ D+GGQ   R  W     +V++I+++V ++++D + +   +
Sbjct: 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 246

Query: 110 LHDLLSKPSLNGIPLLVLGNKIDKPEA----LSKEDLMEQ-MGLKSITD----------- 153
            + L    SLN I   ++ N++    +    L+K DL+E+ + + SI D           
Sbjct: 247 TNRLTE--SLN-IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHC 303

Query: 154 -REVCCYMISCKNSTNIDTVIDWLVKH 179
            R+V  +++ C      D     L  H
Sbjct: 304 LRDVQKFLVECFRGKRRDQQQRPLYHH 330


>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
           Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
           And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
           (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
 pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
           Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
           And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
           (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
 pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
           Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
           [(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
 pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
           Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
           [(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
          Length = 325

 Score = 35.4 bits (80), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G    + +  ++  +++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 150 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209

Query: 109 ELH 111
           E++
Sbjct: 210 EMN 212


>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
 pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
          Length = 194

 Score = 35.4 bits (80), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 22/168 (13%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQP---R 76
           ++G    GKT L+   A   + E+ +PTV F+   V+         + L+D  GQ    R
Sbjct: 23  VVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQEDYDR 81

Query: 77  FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI---DK 133
            R +             VV+ A + N+   + E    L + + N +P L++G +I   D 
Sbjct: 82  LRPLSYPMTDVFLICFSVVNPASFQNV---KEEWVPELKEYAPN-VPFLLIGTQIDLRDD 137

Query: 134 PEALSK-EDLME-----QMGLKSITDREVCCYM-ISCKNSTNIDTVID 174
           P+ L++  D+ E     + G K   +   CCY+  S      + TV D
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFD 185


>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
           Insights Into The Mechanism Of G Protein Activation.
 pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
           Insights Into The Mechanism Of G Protein Activation.
 pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
           Insights Into The Mechanism Of G Protein Activation
          Length = 356

 Score = 35.4 bits (80), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G    + +  ++  +++D+GGQ   R  W      V+AI++ V  +DYD +     
Sbjct: 181 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 240

Query: 109 ELH 111
           E++
Sbjct: 241 EMN 243


>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
           Initiation Complex
          Length = 501

 Score = 35.4 bits (80), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 14/163 (8%)

Query: 22  LSLIGLQNAGKTSLVNVI----ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
           ++++G  + GKTSL+  I       G +  +   +G    +   G +T    D  G   F
Sbjct: 7   VTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMIT--FLDTPGHAAF 64

Query: 78  RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA- 136
            SM  R  +A   +V VV AAD   +P    +  + +       +P++V  NKIDKPEA 
Sbjct: 65  TSMRARGAQATDIVVLVV-AADDGVMP----QTIEAIQHAKAAQVPVVVAVNKIDKPEAD 119

Query: 137 --LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177
               K +L +   L      E     +S K  T ID ++D ++
Sbjct: 120 PDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAIL 162


>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
           For Rgs16-Mediated Deactivation
 pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
           For Rgs16-Mediated Deactivation
          Length = 333

 Score = 35.0 bits (79), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 32/161 (19%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL---PV 105
           + T G      T  N+  +L+D+GGQ   R  W      V+AI++ V  + YD +     
Sbjct: 159 VKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDE 218

Query: 106 SRSELHDLL--------SKPSLNGIPLLVL------GNKIDK----------PEALSKED 141
           + + +H+ L        +K  ++   +L L      G KI K          P + + ED
Sbjct: 219 TTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKKSPLTICFPEYPGSNTYED 278

Query: 142 ----LMEQMGLKSIT-DREVCCYMISCKNSTNIDTVIDWLV 177
               +  Q   K+ + ++E+ C+M    ++ NI  V D + 
Sbjct: 279 AAAYIQTQFESKNRSPNKEIYCHMTCATDTNNIQVVFDAVT 319


>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
           Complex With Gdp
 pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
           Complex With Gdp
 pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
           Complex With Gdp
 pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
           Complex With Gdp
          Length = 187

 Score = 35.0 bits (79), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 13  SLFFKQEME--LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG---FNMRKVTKGNVTIK 67
           +L+F+  +E  L+++G + AGK++L     T  +  +  P +     +   V    V ++
Sbjct: 13  NLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLR 72

Query: 68  LWDLGGQPRFRSMWERYCRAVSA--IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 125
           + D       R+  ERY     A  +VY VD+    +   S  EL  L +K +   IP L
Sbjct: 73  VMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPAL 131

Query: 126 VLGNKID 132
           +LGNK+D
Sbjct: 132 LLGNKLD 138


>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
 pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
          Length = 204

 Score = 35.0 bits (79), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 14/149 (9%)

Query: 11  LRSLFFK-QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTI 66
           + +L+F+ Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V +
Sbjct: 21  MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL 80

Query: 67  KLWDLGGQP---RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 123
            LWD  GQ    R R +             +V  A ++N+   R++ +  +     N  P
Sbjct: 81  GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEVRHHCPN-TP 136

Query: 124 LLVLGNKIDKPEALSKEDLMEQMGLKSIT 152
           ++++G K+D       +D +E++  K +T
Sbjct: 137 IILVGTKLD---LRDDKDTIEKLKEKKLT 162


>pdb|2DW6|A Chain A, Crystal Structure Of The Mutant K184a Of D-Tartrate
           Dehydratase From Bradyrhizobium Japonicum Complexed With
           Mg++ And D-Tartrate
 pdb|2DW6|B Chain B, Crystal Structure Of The Mutant K184a Of D-Tartrate
           Dehydratase From Bradyrhizobium Japonicum Complexed With
           Mg++ And D-Tartrate
 pdb|2DW6|C Chain C, Crystal Structure Of The Mutant K184a Of D-Tartrate
           Dehydratase From Bradyrhizobium Japonicum Complexed With
           Mg++ And D-Tartrate
 pdb|2DW6|D Chain D, Crystal Structure Of The Mutant K184a Of D-Tartrate
           Dehydratase From Bradyrhizobium Japonicum Complexed With
           Mg++ And D-Tartrate
          Length = 389

 Score = 34.7 bits (78), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 10/103 (9%)

Query: 53  GFNMRKVTKGNVTIKLWD----LGGQPRFRSMWERYCRAVSAIVYVVDAADY----DNLP 104
           G   R V  G + + +WD    + G+P FR + ER+    +  V+V  A  Y      L 
Sbjct: 105 GHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAERHGVKANPRVFVYAAGGYYYPGKGLS 164

Query: 105 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG 147
           + R E+   L +   N + + + G  I++ + +  E ++E++G
Sbjct: 165 MLRGEMRGYLDR-GYNVVKMAIGGAPIEE-DRMRIEAVLEEIG 205


>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
           Inactive Gdp Bound State
 pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
           Inactive Gdp Bound State
 pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
           Inactive Gdp Bound State
 pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
           Inactive Gdp Bound State
          Length = 199

 Score = 34.7 bits (78), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 32  KTSLVNVIATGGYSEDMIPTVGFNMRKVT---KGNVTIKLWDLGGQPRFRSMWERYCRAV 88
           K+SLV     G + +  IPT+    R+V    K   T+++ D  G  +F +M        
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80

Query: 89  SAIVYVVDAADYDNLPVSRSELHDLLS--KPSLNGIPLLVLGNKIDKPE 135
            A + V       +L      ++ L+   K S+  IP++++GNK D+ +
Sbjct: 81  HAFILVFSVTSKQSLE-ELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128


>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
 pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
 pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
          Length = 183

 Score = 34.3 bits (77), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 11/90 (12%)

Query: 50  PTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDNL 103
           PT+  + RK T+ +     + + D  GQ  F +M E+Y R      IVY V D A ++++
Sbjct: 49  PTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV 108

Query: 104 PVSRSELHDLLSK-PSLNGIPLLVLGNKID 132
                  H L+ +       P++++ NK+D
Sbjct: 109 ----DRFHQLILRVKDRESFPMILVANKVD 134


>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
           Related Gtp-Binding Protein C
          Length = 196

 Score = 34.3 bits (77), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 29/94 (30%)

Query: 24  LIGLQNAGKTSLVNVI-------------ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
           L+GL+ +GK+S+  V+             +T    +D I    F         V  ++WD
Sbjct: 25  LMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSF---------VNFQIWD 75

Query: 71  LGGQ-----PRFRSMWERYCRAVSAIVYVVDAAD 99
             GQ     P F   +E   R   A++YV+DA D
Sbjct: 76  FPGQMDFFDPTFD--YEMIFRGTGALIYVIDAQD 107


>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
           Gtp
 pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
           Gtp
 pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
 pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
          Length = 167

 Score = 34.3 bits (77), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 8/152 (5%)

Query: 32  KTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAV 88
           K++L     TG + E   PT+    RK   V      +++ D  G  +F SM + Y +  
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75

Query: 89  SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 148
              + V    +  +    +     ++       +P++++GNK+D    L  E  +     
Sbjct: 76  QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD----LESEREVSSSEG 131

Query: 149 KSITDREVCCYM-ISCKNSTNIDTVIDWLVKH 179
           +++ +   C +M  S K+ T +D +   +V+ 
Sbjct: 132 RALAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163


>pdb|1TZZ|A Chain A, Crystal Structure Of The Protein L1841, Unknown Member Of
           Enolase Superfamily From Bradyrhizobium Japonicum
 pdb|1TZZ|B Chain B, Crystal Structure Of The Protein L1841, Unknown Member Of
           Enolase Superfamily From Bradyrhizobium Japonicum
          Length = 392

 Score = 34.3 bits (77), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 10/103 (9%)

Query: 53  GFNMRKVTKGNVTIKLWD----LGGQPRFRSMWERYCRAVSAIVYVVDAADY----DNLP 104
           G   R V  G + + +WD    + G+P FR + ER+    +  V+V  A  Y      L 
Sbjct: 108 GHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAERHGVKANPRVFVYAAGGYYYPGKGLS 167

Query: 105 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG 147
           + R E+   L +   N + + + G  I++ + +  E ++E++G
Sbjct: 168 MLRGEMRGYLDR-GYNVVKMKIGGAPIEE-DRMRIEAVLEEIG 208


>pdb|2DW7|A Chain A, Crystal Structure Of D-Tartrate Dehydratase From
           Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
           Tartrate
 pdb|2DW7|B Chain B, Crystal Structure Of D-Tartrate Dehydratase From
           Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
           Tartrate
 pdb|2DW7|C Chain C, Crystal Structure Of D-Tartrate Dehydratase From
           Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
           Tartrate
 pdb|2DW7|D Chain D, Crystal Structure Of D-Tartrate Dehydratase From
           Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
           Tartrate
 pdb|2DW7|E Chain E, Crystal Structure Of D-Tartrate Dehydratase From
           Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
           Tartrate
 pdb|2DW7|F Chain F, Crystal Structure Of D-Tartrate Dehydratase From
           Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
           Tartrate
 pdb|2DW7|G Chain G, Crystal Structure Of D-Tartrate Dehydratase From
           Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
           Tartrate
 pdb|2DW7|H Chain H, Crystal Structure Of D-Tartrate Dehydratase From
           Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
           Tartrate
 pdb|2DW7|I Chain I, Crystal Structure Of D-Tartrate Dehydratase From
           Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
           Tartrate
 pdb|2DW7|J Chain J, Crystal Structure Of D-Tartrate Dehydratase From
           Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
           Tartrate
 pdb|2DW7|K Chain K, Crystal Structure Of D-Tartrate Dehydratase From
           Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
           Tartrate
 pdb|2DW7|L Chain L, Crystal Structure Of D-Tartrate Dehydratase From
           Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
           Tartrate
 pdb|2DW7|M Chain M, Crystal Structure Of D-Tartrate Dehydratase From
           Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
           Tartrate
 pdb|2DW7|N Chain N, Crystal Structure Of D-Tartrate Dehydratase From
           Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
           Tartrate
 pdb|2DW7|O Chain O, Crystal Structure Of D-Tartrate Dehydratase From
           Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
           Tartrate
 pdb|2DW7|P Chain P, Crystal Structure Of D-Tartrate Dehydratase From
           Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
           Tartrate
          Length = 389

 Score = 34.3 bits (77), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 10/103 (9%)

Query: 53  GFNMRKVTKGNVTIKLWD----LGGQPRFRSMWERYCRAVSAIVYVVDAADY----DNLP 104
           G   R V  G + + +WD    + G+P FR + ER+    +  V+V  A  Y      L 
Sbjct: 105 GHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAERHGVKANPRVFVYAAGGYYYPGKGLS 164

Query: 105 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG 147
           + R E+   L +   N + + + G  I++ + +  E ++E++G
Sbjct: 165 MLRGEMRGYLDR-GYNVVKMKIGGAPIEE-DRMRIEAVLEEIG 205


>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
          Length = 354

 Score = 34.3 bits (77), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+ GQ   R  W      V+AI++ V  +DYD +     
Sbjct: 179 VKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 238

Query: 109 ELH 111
           E++
Sbjct: 239 EMN 241


>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
           Gamma_2 With Gdp Bound
 pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
          Length = 353

 Score = 34.3 bits (77), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+G Q   R  W      V+AI++ V  +DYD +     
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237

Query: 109 ELH 111
           E++
Sbjct: 238 EMN 240


>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
           Hyperthermophilic Archaeon Sulfolobus Solfataricus
 pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
           Hyperthermophilic Archaeon Sulfolobus Solfataricus In
           Complex With Gdp
 pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
          Length = 364

 Score = 33.9 bits (76), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 18/170 (10%)

Query: 22  LSLIGLQNAGKTSLVNVIA--TGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--- 76
           + ++G  N+GKTSL N +   T      +  T+      +   N  I L D  G  R   
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP 241

Query: 77  -------FRSMWERYCRAVSAIVYVVDAADYDNLPV-SRSELHDLLSKPSLNGIPLLVLG 128
                  F ++ E   +   A++ V+D+   +NL + +     ++L +  ++G P+LV  
Sbjct: 242 PQIVDAFFVTLSE--AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL 299

Query: 129 NKIDK--PEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176
           NKIDK   +   K DL+E++  K +         IS    TN++ + D +
Sbjct: 300 NKIDKINGDLYKKLDLVEKLS-KELYSPIFDVIPISALKRTNLELLRDKI 348


>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
           The Gt-Beta-Gamma Subunits
          Length = 350

 Score = 33.9 bits (76), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 101
           + T G    + +  ++  + +D+GGQ   R  W      V+AI++ V  +DYD
Sbjct: 175 VKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 227


>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
           (Rras2) In The Gdp Bound State
 pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
           (Rras2) In The Gdp Bound State
          Length = 172

 Score = 33.5 bits (75), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 5/114 (4%)

Query: 66  IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 125
           + + D  GQ  F +M E+Y R     + V    D  +          +L     +  P++
Sbjct: 55  LDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMI 114

Query: 126 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 178
           ++GNK D    L  +  + Q   + +  +    YM  S K   N+D     LV+
Sbjct: 115 LIGNKAD----LDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVR 164


>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
          Length = 354

 Score = 33.5 bits (75), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+ GQ   R  W      V+AI++ V  +DYD +     
Sbjct: 179 VKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 238

Query: 109 ELH 111
           E++
Sbjct: 239 EMN 241


>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
 pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
          Length = 192

 Score = 33.1 bits (74), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 17/143 (11%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 75  P---RFRSMWERYCRA-VSAIVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 129
               R R +   Y +  VS I + +V  A ++N+   R++ +  +     N  P++++G 
Sbjct: 62  EDYDRLRPL--SYPQTDVSLICFSLVSPASFENV---RAKWYPEVRHHCPN-TPIILVGT 115

Query: 130 KIDKPEALSKEDLMEQMGLKSIT 152
           K+D       +D +E++  K +T
Sbjct: 116 KLD---LRDDKDTIEKLKEKKLT 135


>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
           Mechanism Of Gtp Hydrolysis
          Length = 353

 Score = 33.1 bits (74), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G      T  ++  K++D+GG    R  W      V+AI++ V  +DYD +     
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237

Query: 109 ELH 111
           E++
Sbjct: 238 EMN 240


>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
           Vav1 Exchange Factor
          Length = 184

 Score = 33.1 bits (74), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 13/141 (9%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 75  P---RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
               R R +             +V  A ++N+   R++ +  +     N  P++++G K+
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEVRHHCPN-TPIILVGTKL 117

Query: 132 DKPEALSKEDLMEQMGLKSIT 152
           D       +D +E++  K +T
Sbjct: 118 D---LRDDKDTIEKLKEKKLT 135


>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
 pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
          Length = 204

 Score = 33.1 bits (74), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 14/149 (9%)

Query: 11  LRSLFFK-QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTI 66
           + +L+F+ Q ++  ++G    GKT L+    T     + IPTV  N      V    V +
Sbjct: 21  MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNL 80

Query: 67  KLWDLGGQP---RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 123
            LWD  GQ    R R +             +V  A ++N+   R++ +  +     N  P
Sbjct: 81  GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEVRHHCPN-TP 136

Query: 124 LLVLGNKIDKPEALSKEDLMEQMGLKSIT 152
           ++++G K+D       +D +E++  K +T
Sbjct: 137 IILVGTKLD---LRDDKDTIEKLKEKKLT 162


>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
           Arfaptin (P21)
 pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
           Arfaptin (P41)
          Length = 192

 Score = 33.1 bits (74), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 13/141 (9%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 75  P---RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
               R R +             +V  A ++N+   R++ +  +     N  P++++G K+
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEVRHHCPN-TPIILVGTKL 117

Query: 132 DKPEALSKEDLMEQMGLKSIT 152
           D       +D +E++  K +T
Sbjct: 118 D---LRDDKDTIEKLKEKKLT 135


>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
           And Alf4-
 pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
           And Alf4-
          Length = 359

 Score = 33.1 bits (74), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 9/56 (16%)

Query: 57  RKVTKG---------NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL 103
           RK TKG          +  K+ D+GGQ   R  W +    +++I+++V +++YD +
Sbjct: 183 RKATKGIVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQV 238


>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
           And Gtpase Activating Protein Sptp Bound To Rac1
          Length = 184

 Score = 32.7 bits (73), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 17/143 (11%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 75  P---RFRSMWERYCRA-VSAIVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 129
               R R +   Y +  VS I + +V  A ++N+   R++ +  +     N  P++++G 
Sbjct: 62  EDYDRLRPL--SYPQTDVSLICFSLVSPASFENV---RAKWYPEVRHHCPN-TPIILVGT 115

Query: 130 KIDKPEALSKEDLMEQMGLKSIT 152
           K+D       +D +E++  K +T
Sbjct: 116 KLD---LRDDKDTIEKLKEKKLT 135


>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
           And Rho-Binding Domain Of Human Rocki
 pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
           And Rho-Binding Domain Of Human Rocki
          Length = 183

 Score = 32.7 bits (73), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 122


>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
           The Pseudomonas Aeruginosa Exos Toxin And Human Rac
 pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
           The Pseudomonas Aeruginosa Exos Toxin And Human Rac
          Length = 176

 Score = 32.7 bits (73), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 13/141 (9%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 75  P---RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
               R R +             +V  A ++N+   R++ +  +     N  P++++G K+
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEVRHHCPN-TPIILVGTKL 117

Query: 132 DKPEALSKEDLMEQMGLKSIT 152
           D       +D +E++  K +T
Sbjct: 118 D---LRDDKDTIEKLKEKKLT 135


>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
 pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
          Length = 364

 Score = 32.7 bits (73), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 18/170 (10%)

Query: 22  LSLIGLQNAGKTSLVNVIA--TGGYSEDMIPTVGFNMRKVTKGNVTIKLWDL-----GGQ 74
           + ++G  N+GKTSL N +   T      +  T+      +   N  I L D      G  
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVSFIRGIP 241

Query: 75  PR-----FRSMWERYCRAVSAIVYVVDAADYDNLPV-SRSELHDLLSKPSLNGIPLLVLG 128
           P+     F ++ E   +   A++ V+D+   +NL + +     ++L +  ++G P+LV  
Sbjct: 242 PQIVDAFFVTLSE--AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL 299

Query: 129 NKIDK--PEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176
           NKIDK   +   K DL+E++  K +         IS    TN++ + D +
Sbjct: 300 NKIDKINGDLYKKLDLVEKLS-KELYSPIFDVIPISALKRTNLELLRDKI 348


>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
           Effector Domain Of The Protein Kinase PknPRK1
 pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
          Length = 182

 Score = 32.7 bits (73), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 68  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 121


>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
           DOMAINS WITH GTP- Gamma-S Activated Rhoa
 pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
           DOMAINS WITH GTP- Gamma-S Activated Rhoa
          Length = 182

 Score = 32.7 bits (73), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 68  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 121


>pdb|1MH1|A Chain A, Small G-Protein
          Length = 186

 Score = 32.7 bits (73), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 17/143 (11%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 75  P---RFRSMWERYCRA-VSAIVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 129
               R R +   Y +  VS I + +V  A ++N+   R++ +  +     N  P++++G 
Sbjct: 64  EDYDRLRPL--SYPQTDVSLICFSLVSPASFENV---RAKWYPEVRHHCPN-TPIILVGT 117

Query: 130 KIDKPEALSKEDLMEQMGLKSIT 152
           K+D       +D +E++  K +T
Sbjct: 118 KLD---LRDDKDTIEKLKEKKLT 137


>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
           In Complex With Rac1
 pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
           In Complex With Rac1
 pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
           In Complex With Rac1
 pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
           Plexin-B1 In Complex With Rac1
          Length = 184

 Score = 32.7 bits (73), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 13/141 (9%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 75  P---RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
               R R +             +V  A ++N+   R++ +  +     N  P++++G K+
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEVRHHCPN-TPIILVGTKL 117

Query: 132 DKPEALSKEDLMEQMGLKSIT 152
           D       +D +E++  K +T
Sbjct: 118 D---LRDDKDTIEKLKEKKLT 135


>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
           2
          Length = 178

 Score = 32.7 bits (73), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 13/141 (9%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 75  P---RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
               R R +             +V  A ++N+   R++ +  +     N  P++++G K+
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEVRHHCPN-TPIILVGTKL 117

Query: 132 DKPEALSKEDLMEQMGLKSIT 152
           D       +D +E++  K +T
Sbjct: 118 D---LRDDKDTIEKLKEKKLT 135


>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
 pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
          Length = 364

 Score = 32.7 bits (73), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 18/170 (10%)

Query: 22  LSLIGLQNAGKTSLVNVIA--TGGYSEDMIPTVGFNMRKVTKGNVTIKLWDL-----GGQ 74
           + ++G  N+GKTSL N +   T      +  T+      +   N  I L D      G  
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVPFIRGIP 241

Query: 75  PR-----FRSMWERYCRAVSAIVYVVDAADYDNLPV-SRSELHDLLSKPSLNGIPLLVLG 128
           P+     F ++ E   +   A++ V+D+   +NL + +     ++L +  ++G P+LV  
Sbjct: 242 PQIVDAFFVTLSE--AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL 299

Query: 129 NKIDK--PEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176
           NKIDK   +   K DL+E++  K +         IS    TN++ + D +
Sbjct: 300 NKIDKINGDLYKKLDLVEKLS-KELYSPIFDVIPISALKRTNLELLRDKI 348


>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
 pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
          Length = 193

 Score = 32.7 bits (73), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 120


>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
 pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
 pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
 pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
 pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
          Length = 188

 Score = 32.7 bits (73), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 17/143 (11%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 6   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 65

Query: 75  P---RFRSMWERYCRA-VSAIVY-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 129
               R R +   Y +  VS I + +V  A ++N+   R++ +  +     N  P++++G 
Sbjct: 66  EDYDRLRPL--SYPQTDVSLICFSLVSPASFENV---RAKWYPEVRHHCPN-TPIILVGT 119

Query: 130 KIDKPEALSKEDLMEQMGLKSIT 152
           K+D       +D +E++  K +T
Sbjct: 120 KLD---LRDDKDTIEKLKEKKLT 139


>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
           Nucleotide Exchange Region Of Tiam1
 pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
           Nucleotide Exchange Region Of Tiam1
 pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
           Nucleotide Exchange Region Of Tiam1
 pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
           Nucleotide Exchange Region Of Tiam1
 pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
           Nucleotide- Free Rac1
 pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
           Exchange By The T-Cell Essential Vav1
 pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
           Exchange By The T-Cell Essential Vav1
          Length = 177

 Score = 32.7 bits (73), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 13/141 (9%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 75  P---RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
               R R +             +V  A ++N+   R++ +  +     N  P++++G K+
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEVRHHCPN-TPIILVGTKL 117

Query: 132 DKPEALSKEDLMEQMGLKSIT 152
           D       +D +E++  K +T
Sbjct: 118 D---LRDDKDTIEKLKEKKLT 135


>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
           LEUKEMIA-Associated Rhogef In Complex With Rhoa
 pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
           LEUKEMIA-Associated Rhogef In Complex With Rhoa
 pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
           LEUKEMIA-Associated Rhogef In Complex With Rhoa
 pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
           LEUKEMIA-Associated Rhogef In Complex With Rhoa
 pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
           Rhoa
 pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
           Rhoa
          Length = 196

 Score = 32.7 bits (73), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 123


>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
           With Rhogdi In Its Active Gppnhp-Bound Form
          Length = 195

 Score = 32.7 bits (73), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 122


>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
           (Complex A)
 pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
           (Complex A)
 pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
           (Complex A)
 pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
           (Complex A)
 pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
           (Complex B)
 pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
           (Complex B)
 pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
           C)
          Length = 185

 Score = 32.3 bits (72), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 70

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 71  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 124


>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
 pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
          Length = 196

 Score = 32.3 bits (72), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 13/141 (9%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 21  QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 80

Query: 75  P---RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
               R R +             +V  A ++N+   R++ +  +     N  P++++G K+
Sbjct: 81  EDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEVRHHCPN-TPIILVGTKL 136

Query: 132 DKPEALSKEDLMEQMGLKSIT 152
           D       +D +E++  K +T
Sbjct: 137 D---LRDDKDTIEKLKEKKLT 154


>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
           Domains Of Dbs In Complex With Rhoa
 pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
           Domains Of Dbs In Complex With Rhoa
 pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
           Domains Of Dbs In Complex With Rhoa
 pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
           Domains Of Dbs In Complex With Rhoa
          Length = 192

 Score = 32.3 bits (72), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 122


>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
 pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
          Length = 183

 Score = 32.3 bits (72), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 44  YSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSMWERYCRAVSA--IVY-VVDA 97
           + +D  PT+  +  K T+ +     + + D  GQ  F +M E+Y R      IVY V D 
Sbjct: 43  FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK 102

Query: 98  ADYDNLPVSRSELHDLLSK-PSLNGIPLLVLGNKID 132
           A ++++       H L+ +       P++++ NK+D
Sbjct: 103 ASFEHV----DRFHQLILRVKDRESFPMILVANKVD 134


>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
 pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
 pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
          Length = 201

 Score = 32.3 bits (72), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 140


>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
           With Galpha-13 Bound To Gdp
          Length = 338

 Score = 32.3 bits (72), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 20/131 (15%)

Query: 50  PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 109
           PT G +       NV  K+ D+GG    R  W     +V++I+++V ++++D + +   +
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222

Query: 110 LHDLLSKPSLNGIPLLVLGNKIDKPEA----LSKEDLMEQ-MGLKSITD----------- 153
            + L    SLN I   ++ N++    +    L+K DL+E+ + + SI D           
Sbjct: 223 TNRLTE--SLN-IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHC 279

Query: 154 -REVCCYMISC 163
            R+V  +++ C
Sbjct: 280 LRDVQKFLVEC 290


>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
          Length = 192

 Score = 32.3 bits (72), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 20/126 (15%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61

Query: 75  P---RFRSMWERYCRAVSAIVYVVDAADYDNL-----PVSRSELHDLLSKPSLNGIPLLV 126
               R R +             +V  A Y+N+     P  R         PS    P+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC------PS---TPIIL 112

Query: 127 LGNKID 132
           +G K+D
Sbjct: 113 VGTKLD 118


>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
           In The Gdp- Bound State
          Length = 181

 Score = 32.3 bits (72), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 6/150 (4%)

Query: 32  KTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSMWERYCRAV 88
           K++L        +  D  PT+  +  K+   +     + + D  GQ  F +M E+Y RA 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81

Query: 89  SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 148
              + V    D  +          +L     +  P++++GNK D     S+  +      
Sbjct: 82  HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD---LESQRQVPRSEAS 138

Query: 149 KSITDREVCCYMISCKNSTNIDTVIDWLVK 178
                  V  +  S K   N+D   + LV+
Sbjct: 139 AFGASHHVAYFEASAKLRLNVDEAFEQLVR 168


>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
          Length = 201

 Score = 32.3 bits (72), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFXPNVPIILVGNKKD 140


>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
 pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
          Length = 204

 Score = 32.0 bits (71), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 14/149 (9%)

Query: 11  LRSLFFK-QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTI 66
           + +L+F+ Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V +
Sbjct: 21  MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL 80

Query: 67  KLWDLGG---QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 123
            LWD  G     R R +             +V  A ++N+   R++ +  +     N  P
Sbjct: 81  GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEVRHHCPN-TP 136

Query: 124 LLVLGNKIDKPEALSKEDLMEQMGLKSIT 152
           ++++G K+D       +D +E++  K +T
Sbjct: 137 IILVGTKLD---LRDDKDTIEKLKEKKLT 162


>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
           From Entamoeba Histolytica, Ehg-Alpha-1
 pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
           From Entamoeba Histolytica, Ehg-Alpha-1
          Length = 340

 Score = 32.0 bits (71), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 14/101 (13%)

Query: 46  EDMI----PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 101
           ED+I     T G +       ++   L D+GGQ   R  W  +   V   ++V   A+YD
Sbjct: 139 EDLIHNRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYD 198

Query: 102 ----------NLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
                      L  S +   D+ +   L G   L+  NK D
Sbjct: 199 XKLYEDGNTSRLTESIAVFKDIXTNEFLKGAVKLIFLNKXD 239


>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
 pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
          Length = 178

 Score = 31.6 bits (70), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 66  IKLWDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSK-PSLNG 121
           + + D  GQ  F +M E+Y R      IVY V D A ++++       H L+ +      
Sbjct: 63  LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV----DRFHQLILRVKDRES 118

Query: 122 IPLLVLGNKID 132
            P++++ NK+D
Sbjct: 119 FPMILVANKVD 129


>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
           (Type 1)
 pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
           (Type 2)
          Length = 183

 Score = 31.6 bits (70), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 66  IKLWDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSK-PSLNG 121
           + + D  GQ  F +M E+Y R      IVY V D A ++++       H L+ +      
Sbjct: 68  LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV----DRFHQLILRVKDRES 123

Query: 122 IPLLVLGNKID 132
            P++++ NK+D
Sbjct: 124 FPMILVANKVD 134


>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
 pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
 pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-Specific Nucleotide Exchange Factor Sos
 pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-Specific Nucleotide Exchange Factor Sos
 pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-Specific Nucleotide Exchange Factor Sos
 pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-Specific Nucleotide Exchange Factor Sos
          Length = 166

 Score = 31.6 bits (70), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D GGQ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
 pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
 pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
          Length = 185

 Score = 31.6 bits (70), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 20/126 (15%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 8   QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 67

Query: 75  P---RFRSMWERYCRAVSAIVYVVDAADYDNL-----PVSRSELHDLLSKPSLNGIPLLV 126
               R R +             +V  A Y+N+     P  R         PS    P+++
Sbjct: 68  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC------PS---TPIIL 118

Query: 127 LGNKID 132
           +G K+D
Sbjct: 119 VGTKLD 124


>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
          Length = 177

 Score = 31.6 bits (70), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 118


>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
           Fragment Of Pdzrhogef
 pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
           Fragment Of Pdzrhogef
 pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
           N-Terminal Regulatory Elements In Complex With Human
           Rhoa
 pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
           N-Terminal Regulatory Elements In Complex With Human
           Rhoa
          Length = 178

 Score = 31.6 bits (70), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 118


>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
           Domain Of Arhgap20
          Length = 180

 Score = 31.6 bits (70), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 120


>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
           Complexed With Gtp Gamma S
 pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
           Complexed With Gtp Gamma S
 pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
           Complexed With Gtp Gamma S
 pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
           Crystal Structure Of Transducin Alpha-Gdp-Alf4-
 pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
           Crystal Structure Of Transducin Alpha-Gdp-Alf4-
 pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
           Crystal Structure Of Transducin Alpha-Gdp-Alf4-
 pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
           Alpha-Subunit Of A Heterotrimeric G Protein
          Length = 324

 Score = 31.6 bits (70), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 108
           + T G    + +  ++  +++D+GGQ   R  W      V+ I+++   + YD + V   
Sbjct: 149 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDD 208

Query: 109 ELH 111
           E++
Sbjct: 209 EVN 211


>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
 pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
          Length = 192

 Score = 31.6 bits (70), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 10/121 (8%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 75  P---RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
               R R +             +V  A ++N+   R++ +  + +      P+L++G K+
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEV-RHHCPHTPILLVGTKL 117

Query: 132 D 132
           D
Sbjct: 118 D 118


>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
 pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
 pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
 pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
          Length = 184

 Score = 31.6 bits (70), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 20/126 (15%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 9   QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 68

Query: 75  P---RFRSMWERYCRAVSAIVYVVDAADYDNL-----PVSRSELHDLLSKPSLNGIPLLV 126
               R R +             +V  A Y+N+     P  R         PS    P+++
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC------PS---TPIIL 119

Query: 127 LGNKID 132
           +G K+D
Sbjct: 120 VGTKLD 125


>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
          Gtp-Gdp
          Length = 310

 Score = 31.2 bits (69), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 13/88 (14%)

Query: 21 ELSLIGLQNAGKTSLVNVIATGGYSEDM------IPTVGFNMRKVTKGNVTIKLWDLGGQ 74
          +L L+G   +GK+S+ ++I +   + D       I     ++R +  GN+T+ LWD GGQ
Sbjct: 8  KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL--GNMTLNLWDCGGQ 65

Query: 75 PRFRSMW-----ERYCRAVSAIVYVVDA 97
            F   +     +   + V  +++V D 
Sbjct: 66 DVFMENYFTKQKDHIFQMVQVLIHVFDV 93


>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
           Gmppnp
 pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
           Gmppnp
          Length = 193

 Score = 31.2 bits (69), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 120


>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
           Effector Phospholipase C Beta 3
          Length = 327

 Score = 31.2 bits (69), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV--- 105
           +PT G         +V  ++ D+GGQ   R  W      V++I+++V  ++YD + V   
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 211

Query: 106 -------SRSELHDLLSKPSLNGIPLLVLGNKID 132
                  S++    +++ P      +++  NK D
Sbjct: 212 NENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245


>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
           In Complex With Galpha-q And Gbetagamma Subunits
 pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
           Rhoa
 pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
           Rhoa
          Length = 353

 Score = 31.2 bits (69), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV--- 105
           +PT G         +V  ++ D+GGQ   R  W      V++I+++V  ++YD + V   
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237

Query: 106 -------SRSELHDLLSKPSLNGIPLLVLGNKID 132
                  S++    +++ P      +++  NK D
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKD 271


>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
 pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
          Length = 193

 Score = 31.2 bits (69), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 120


>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
           Human Plcbeta3
 pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
           Human Plcbeta3
          Length = 353

 Score = 31.2 bits (69), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV--- 105
           +PT G         +V  ++ D+GGQ   R  W      V++I+++V  ++YD + V   
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237

Query: 106 -------SRSELHDLLSKPSLNGIPLLVLGNKID 132
                  S++    +++ P      +++  NK D
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKD 271


>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
           In Complex With An Inhibitor Ym-254890
          Length = 355

 Score = 31.2 bits (69), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV--- 105
           +PT G         +V  ++ D+GGQ   R  W      V++I+++V  ++YD + V   
Sbjct: 180 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 239

Query: 106 -------SRSELHDLLSKPSLNGIPLLVLGNKID 132
                  S++    +++ P      +++  NK D
Sbjct: 240 NENRMEESKALFRTIITYPWFQNSSVILFLNKKD 273


>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
 pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
          Length = 190

 Score = 31.2 bits (69), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  GQ  +
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 120


>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
           Gdp And Chloride
 pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
           Gdp And Chloride
 pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
           The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
 pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
           The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
 pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
           The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
 pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
           The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
 pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
           The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
 pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
           The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
 pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
           The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
 pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
           The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
 pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
           Domain Of Human P21-Activated Kinase 1 (Pak1)
          Length = 179

 Score = 31.2 bits (69), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 10/121 (8%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 3   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62

Query: 75  P---RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
               R R +             +V  A ++N+   R++ +  + +      P+L++G K+
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEV-RHHCPHTPILLVGTKL 118

Query: 132 D 132
           D
Sbjct: 119 D 119


>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
           (rgs2) In Complex With Murine Galpha-q(r183c)
 pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
           (rgs2) In Complex With Murine Galpha-q(r183c)
 pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
           (rgs2) In Complex With Murine Galpha-q(r183c)
          Length = 347

 Score = 31.2 bits (69), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 49  IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV--- 105
           +PT G         +V  ++ D+GGQ   R  W      V++I+++V  ++YD + V   
Sbjct: 172 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 231

Query: 106 -------SRSELHDLLSKPSLNGIPLLVLGNKID 132
                  S++    +++ P      +++  NK D
Sbjct: 232 NENRMEESKALFRTIITYPWFQNSSVILFLNKKD 265


>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
          Length = 207

 Score = 31.2 bits (69), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 13 SLFFKQ--EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIK 67
          +L+F+     +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + 
Sbjct: 17 NLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELA 76

Query: 68 LWDLGGQPRF 77
          LWD  GQ  +
Sbjct: 77 LWDTAGQEDY 86


>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
           Gpp(Nh)p.
 pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
           Gpp(Nh)p
          Length = 180

 Score = 30.8 bits (68), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 10/121 (8%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 3   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62

Query: 75  P---RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
               R R +             +V  A ++N+   R++ +  + +      P+L++G K+
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEV-RHHCPHTPILLVGTKL 118

Query: 132 D 132
           D
Sbjct: 119 D 119


>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
           Protein Complex
          Length = 380

 Score = 30.8 bits (68), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 51  TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 101
           T G    K     V   ++D+GGQ   R  W +    V+AI++VV ++ Y+
Sbjct: 190 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYN 240


>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
           Mammalian Adenylyl Cyclase: Complex With
           2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
           Mg
 pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
           Cyclase By Mant-gtp
 pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
           Adenylyl Cyclase: Complex With Tnp-Atp And Mn
 pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
           Domains Of Mammalian Adenylyl Cyclase: Complex With
           Mant- Atp And Mn
 pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
           Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
 pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
           Mammalian Adenylyl Cyclase: Complex With Adenosine
           5-o-(l-thiophosphate) And Low Ca Concentration
          Length = 394

 Score = 30.8 bits (68), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 51  TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 101
           T G    K     V   ++D+GGQ   R  W +    V+AI++VV ++ Y+
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYN 254


>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
           Mammalian Adenylyl Cyclase: Complex With
           2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
          Length = 380

 Score = 30.8 bits (68), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 51  TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 101
           T G    K     V   ++D+GGQ   R  W +    V+AI++VV ++ Y+
Sbjct: 190 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYN 240


>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
          Ehrho1-Gtpgammas
          Length = 188

 Score = 30.8 bits (68), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGG 73
          K+ +++ ++G    GKT L+   + G      +PTV  N   V K       + LWD  G
Sbjct: 20 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 79

Query: 74 QPRFRSM 80
          Q  +  +
Sbjct: 80 QEEYDRL 86


>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
           Mammalian Adenylyl Cyclase
 pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
 pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
 pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
           Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
           And Ca
 pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
           Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
           And Mg
 pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
           Mammalian Adenylyl Cyclase: Complex With
           Adenosine-5'-Triphosphate And Ca
          Length = 402

 Score = 30.8 bits (68), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 51  TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 101
           T G    K     V   ++D+GGQ   R  W +    V+AI++VV ++ Y+
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYN 254


>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
 pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
 pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
          Magnesium
 pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
          Magnesium
          Length = 194

 Score = 30.8 bits (68), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGG 73
          K+ +++ ++G    GKT L+   + G      +PTV  N   V K       + LWD  G
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80

Query: 74 QPRF 77
          Q  +
Sbjct: 81 QEEY 84


>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
           Mammalian Adenylyl Cyclase: Complex With Adenosine
           5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
 pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
           Mammalian Adenylyl Cyclase: Complex With
           Beta-L-2',3'-Dideoxyatp, Mn, And Mg
 pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
           Mammalian Adenylyl Cyclase: Complex With
           Beta-L-2',3'-Dideoxyatp And Mg
 pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
           Mammalian Adenylyl Cyclase: Complex With
           Beta-L-2',3'-Dideoxyatp, Mg, And Zn
 pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
           Adenylyl Cyclase: Complex With 2'(3')-O-(N-
           Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
          Length = 402

 Score = 30.8 bits (68), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 51  TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 101
           T G    K     V   ++D+GGQ   R  W +    V+AI++VV ++ Y+
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYN 254


>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
           Thermus Thermophilus Hb8
          Length = 301

 Score = 30.8 bits (68), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 88  VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
           V+A+V+VVD     + P    EL     KP +  +P+L++GNK+D
Sbjct: 87  VNAVVWVVD---LRHPPTPEDELVARALKPLVGKVPILLVGNKLD 128


>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
          Length = 190

 Score = 30.4 bits (67), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 66/130 (50%), Gaps = 11/130 (8%)

Query: 13  SLFFK--QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IK 67
           +L+F+   E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + 
Sbjct: 13  NLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLD 72

Query: 68  LWDLGGQPRFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPL 124
           + D  GQ  + +M ++Y R     + V    ++  + ++ + R ++  +  K S + +P+
Sbjct: 73  ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRV--KDS-DDVPM 129

Query: 125 LVLGNKIDKP 134
           +++GNK D P
Sbjct: 130 VLVGNKCDLP 139


>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
           Isoleucine
          Length = 166

 Score = 30.4 bits (67), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 68/143 (47%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G +  + + D  GQ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
          Length = 178

 Score = 30.4 bits (67), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 15/167 (8%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSE-DMIPTVGFNMRKVTKGNVTIKL-WDLGGQPR 76
           E+ L ++G   +GK+SL++   TG Y   +   +  +    +  G   + L  +  G P 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 66

Query: 77  FR-SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK---PSLNGIPLLVLGNKID 132
            + S W        A+++V    D ++     S LH  LS        G+ L ++G + D
Sbjct: 67  AKFSGW------ADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQ-D 118

Query: 133 KPEALSKEDLMEQMGLKSITDREVCCYMISCKN-STNIDTVIDWLVK 178
           +  A S   + +        D + C Y  +C     N+D V   + +
Sbjct: 119 RISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQ 165


>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
           Arfaptin
 pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
          Length = 192

 Score = 30.0 bits (66), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 13/141 (9%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGG- 73
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  G 
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61

Query: 74  --QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
               R R +             +V  A ++N+   R++ +  +     N  P++++G K+
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEVRHHCPN-TPIILVGTKL 117

Query: 132 DKPEALSKEDLMEQMGLKSIT 152
           D       +D +E++  K +T
Sbjct: 118 D---LRDDKDTIEKLKEKKLT 135


>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
          Length = 192

 Score = 30.0 bits (66), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 13/141 (9%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGG- 73
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  G 
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61

Query: 74  --QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
               R R +             +V  A ++N+   R++ +  +     N  P++++G K+
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEVRHHCPN-TPIILVGTKL 117

Query: 132 DKPEALSKEDLMEQMGLKSIT 152
           D       +D +E++  K +T
Sbjct: 118 D---LRDDKDTIEKLKEKKLT 135


>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
 pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
 pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
 pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
          Length = 166

 Score = 30.0 bits (66), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
          Length = 180

 Score = 30.0 bits (66), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 13/141 (9%)

Query: 18  QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGG- 73
           Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  G 
Sbjct: 5   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 64

Query: 74  --QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131
               R R +             +V  A ++N+   R++ +  +     N  P++++G K+
Sbjct: 65  EDYDRLRPLSYPQTDVFLICFSLVSPASFENV---RAKWYPEVRHHCPN-TPIILVGTKL 120

Query: 132 DKPEALSKEDLMEQMGLKSIT 152
           D       +D +E++  K +T
Sbjct: 121 D---LRDDKDTIEKLKEKKLT 138


>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
          Length = 196

 Score = 30.0 bits (66), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 18/183 (9%)

Query: 10  WLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTI 66
           + +S+    E++L++ G    GK++LV    T  +  +  PT+    R    +    V++
Sbjct: 19  YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSM 78

Query: 67  KLWDLGGQPRF--RSMWERYCRAVSAIVYVVDAADYDN-LPVSRSELHDLLSKPSLNGIP 123
           ++ D  GQ     R    R+      +  + D   ++  LP+    + D + KP    + 
Sbjct: 79  EILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKN--ILDEIKKP--KNVT 134

Query: 124 LLVLGNK--IDKPEALSKEDLMEQMGLKSITDREVCCYMIS-CKNSTNIDTVIDWLVKHS 180
           L+++GNK  +D    +S E+     G K  T+     Y  S C    NI  +   L +  
Sbjct: 135 LILVGNKADLDHSRQVSTEE-----GEKLATELACAFYECSACTGEGNITEIFYELCREV 189

Query: 181 KSK 183
           + +
Sbjct: 190 RRR 192


>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
          Length = 166

 Score = 29.6 bits (65), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + E   PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
           Differences Between Active And Inactive Forms Of
           Protooncogenic Ras Proteins
          Length = 189

 Score = 29.6 bits (65), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +      + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS---DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
           Costello Syndrome, Bound To Mg-Gdp
          Length = 166

 Score = 29.6 bits (65), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
           Molecular Basis For Their Inability To Function As
           Signal Switch Molecules
          Length = 166

 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
           Differences Between Active And Inactive Forms Of
           Protooncogenic Ras Proteins
 pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
           Differences Between Active And Inactive Forms Of
           Protooncogenic Ras Proteins
 pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
           Differences Between Active And Inactive Forms Of
           Protooncogenic Ras Proteins
 pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
           Differences Between Active And Inactive Forms Of
           Protooncogenic Ras Proteins
 pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
           Cell-Free Synthesis
 pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
           Structure
 pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
           Catalytic Domains Of Normal Ras Protein And An Oncogenic
           Mutant Complexed With Gsp
          Length = 171

 Score = 29.3 bits (64), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
           Catalytic Domains Of Normal Ras Protein And An Oncogenic
           Mutant Complexed With Gsp
          Length = 171

 Score = 29.3 bits (64), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
 pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
 pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
 pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
 pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
 pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-specific Nucleotide Exchange Factor Sos
 pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-specific Nucleotide Exchange Factor Sos
 pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-specific Nucleotide Exchange Factor Sos
 pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
 pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
 pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
 pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
 pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
 pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
           C- Terminal Verkuerzten Menschlichen Krebsproteins
           P21-H-Ras
 pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
           Determined By Heteronuclear Three And Four Dimensional
           Nmr Spectroscopy
 pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
           Determined By Heteronuclear Three And Four Dimensional
           Nmr Spectroscopy
 pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
           Determined By Heteronuclear Three And Four Dimensional
           Nmr Spectroscopy
 pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
           Of The Oncogene Product P21h-Ras Complexed With Caged
           Gtp And Mant Dgppnhp
 pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
           Of The Oncogene Product P21h-Ras Complexed With Caged
           Gtp And Mant Dgppnhp
 pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
           Of The Oncogene Product P21h-Ras Complexed With Caged
           Gtp And Mant Dgppnhp
 pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
           Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
           For The Mechanism Of Gtp Hydrolysis
 pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
 pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
 pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
 pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
           A
 pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
 pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
 pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
 pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
 pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
           Of 10 In Mscs Set
 pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
 pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
 pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
           Mscs Set
 pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
 pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
 pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
 pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
 pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
           Set
 pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
 pdb|3TGP|A Chain A, Room Temperature H-Ras
 pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
 pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
 pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
 pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
          Length = 166

 Score = 29.3 bits (64), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
           Gtp
 pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
 pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
 pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
           Free Mutant) Complex
 pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
 pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
          Length = 166

 Score = 29.3 bits (64), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
          Self-Activating Gtpase
 pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
          Self-Activating Gtpase
 pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
          Self-Activating Gtpase
 pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
          Self-Activating Gtpase
          Length = 203

 Score = 29.3 bits (64), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
          Q ++  ++G    GKT L+    T  +  + IPTV  N      V    V + LWD  GQ
Sbjct: 4  QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63


>pdb|3R7W|A Chain A, Crystal Structure Of Gtr1p-Gtr2p Complex
 pdb|3R7W|C Chain C, Crystal Structure Of Gtr1p-Gtr2p Complex
          Length = 307

 Score = 29.3 bits (64), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 5/41 (12%)

Query: 62 GNVTIKLWDLGGQPRFRSMW-----ERYCRAVSAIVYVVDA 97
          GN T+ LWD GGQ  F   +     +   + V  +++V D 
Sbjct: 50 GNXTLNLWDCGGQDVFXENYFTKQKDHIFQXVQVLIHVFDV 90


>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
           (State 1)
          Length = 171

 Score = 29.3 bits (64), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 8   EYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 67

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +      + +P++++GNK D
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS---DDVPMVLVGNKCD 124

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 125 LAARTVESRQAQDLARSYGIPYI 147


>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
           (State 1)
          Length = 171

 Score = 29.3 bits (64), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 8   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 67

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +      + +P++++GNK D
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS---DDVPMVLVGNKCD 124

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 125 LAARTVESRQAQDLARSYGIPYI 147


>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
           Ras
 pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
           Ras
 pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
           Ras
          Length = 166

 Score = 28.9 bits (63), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK +L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
 pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
 pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
 pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
 pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
 pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
          Length = 166

 Score = 28.9 bits (63), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M + Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
 pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
 pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
 pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
 pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
 pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
 pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
 pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
          Length = 198

 Score = 28.9 bits (63), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 68  LWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKP-SLNGIP 123
           L+ + GQ  + +  +   R V  IV+V D+A      N    R+   +L     +L+ +P
Sbjct: 78  LYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRENLAEYGLTLDDVP 137

Query: 124 LLVLGNKIDKPEALSKE 140
           +++  NK D P+AL  E
Sbjct: 138 IVIQVNKRDLPDALPVE 154


>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
 pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
 pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
 pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
 pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
 pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
          Length = 187

 Score = 28.9 bits (63), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 75/178 (42%), Gaps = 23/178 (12%)

Query: 13  SLFFK--QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IK 67
           +L+F+   E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + 
Sbjct: 13  NLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLD 72

Query: 68  LWDLGGQPRFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPL 124
           + D  G   + +M ++Y R     + V    +   ++++   R ++  +        +P+
Sbjct: 73  ILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED---VPM 129

Query: 125 LVLGNKIDKP----EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
           +++GNK D P    +    +DL    G+  I          S K    +D     LV+
Sbjct: 130 VLVGNKCDLPSRTVDTKQAQDLARSYGIPFIE--------TSAKTRQGVDDAFYTLVR 179


>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
           Inhibit Sos- Mediated Activation
 pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
           Inhibit Sos- Mediated Activation
          Length = 170

 Score = 28.9 bits (63), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 21/170 (12%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 4   EYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +        +P++++GNK D
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS---EDVPMVLVGNKSD 120

Query: 133 KP----EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
            P    +    +DL    G+  I          S K    +D     LV+
Sbjct: 121 LPSRTVDTKQAQDLARSYGIPFIE--------TSAKTRQGVDDAFYTLVR 162


>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
           Inhibit Sos- Mediated Activation
 pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
           Inhibit Sos- Mediated Activation
 pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
           Inhibit Sos- Mediated Activation
          Length = 170

 Score = 28.9 bits (63), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 21/170 (12%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 4   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +        +P++++GNK D
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS---EDVPMVLVGNKSD 120

Query: 133 KP----EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178
            P    +    +DL    G+  I          S K    +D     LV+
Sbjct: 121 LPSRTVDTKQAQDLARSYGIPFIE--------TSAKTRQGVDDAFYTLVR 162


>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
 pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
          Length = 173

 Score = 28.9 bits (63), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 10  EYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 69

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 70  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 126

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 127 LAARTVESRQAQDLARSYGIPYI 149


>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
           Molecular Basis For Their Inability To Function As
           Signal Switch Molecules
          Length = 166

 Score = 28.5 bits (62), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
           P21 In Complex With Gdp (2)
          Length = 166

 Score = 28.5 bits (62), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKSD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
           Bound To Gdp
          Length = 272

 Score = 28.5 bits (62), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 18/122 (14%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQPRFR- 78
           E++LIG  N+GKTSL N+I          P V    +  + K N  +++ DL G      
Sbjct: 5   EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLVKKNKDLEIQDLPGIYSMSP 64

Query: 79  -SMWERYCR------AVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
            S  E+  R         +I+ VVDA + + NL ++   +          GIP+ +  N 
Sbjct: 65  YSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIE--------TGIPVTIALNM 116

Query: 131 ID 132
           ID
Sbjct: 117 ID 118


>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
           P21 In Complex With Gppnhp
 pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
           P21 In Complex With S-Caged Gtp
 pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
           P21 In Complex With Gtp
 pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
           P21 In Complex With Gtp (2)
 pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
           P21 In Complex With R-Caged Gtp
 pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
           P21 In Complex With Gdp
          Length = 166

 Score = 28.5 bits (62), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKSD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
          Length = 396

 Score = 28.5 bits (62), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGG 73
          F   +++ ++GL N GK++  NV+     S +  P  T+  N  +V    V  + +D   
Sbjct: 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVP---VPDERFD--- 72

Query: 74 QPRFRSMWERYCRAVSAIVYVVDAA 98
             F   + +    + A + VVD A
Sbjct: 73 ---FLCQYHKPASKIPAFLNVVDIA 94


>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
           Costello Syndrome, Bound To Mg-Gdp
          Length = 166

 Score = 28.5 bits (62), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GN+ D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNRCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
           Without Nucleotide
          Length = 272

 Score = 28.5 bits (62), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 18/122 (14%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQPRFR- 78
           E++LIG  N+GKTSL N+I          P V    +  + K N  +++ DL G      
Sbjct: 5   EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLVKKNKDLEIQDLPGIYSMSP 64

Query: 79  -SMWERYCR------AVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
            S  E+  R         +I+ VVDA + + NL ++   +          GIP+ +  N 
Sbjct: 65  YSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIE--------TGIPVTIALNM 116

Query: 131 ID 132
           ID
Sbjct: 117 ID 118


>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
           The Ras-interacting Domain Of Ralgds
 pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
           The Ras-interacting Domain Of Ralgds
          Length = 167

 Score = 28.5 bits (62), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 64/143 (44%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + +   PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +      + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV---KDSDDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
 pdb|3T1O|A Chain A, Mgla Bound To Gdp
 pdb|3T1O|B Chain B, Mgla Bound To Gdp
 pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
          Length = 198

 Score = 28.1 bits (61), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 68  LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP-----SLNGI 122
           L+ + GQ  + +  +   R V  IV+V D+A  + L  +   + ++         +L+ +
Sbjct: 78  LYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMRENLAEYGLTLDDV 136

Query: 123 PLLVLGNKIDKPEALSKE 140
           P+++  NK D P+AL  E
Sbjct: 137 PIVIQVNKRDLPDALPVE 154


>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
           (T35s) Complexed With Guanosine-5'-[b,G-Imido]
           Triphosphate
 pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
           (T35s) Complexed With Guanosine-5'-[b,G-Imido]
           Triphosphate
 pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
           (T35s) Complexed With Guanosine-5'-[b,G-Imido]
           Triphosphate
          Length = 166

 Score = 28.1 bits (61), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  P++  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
           Bound To Gmppnp
 pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
           Bound To Gmppnp
          Length = 272

 Score = 28.1 bits (61), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 18/122 (14%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQPRFR- 78
           E++LIG  N+GKTSL N+I          P V    +  + K N  +++ DL G      
Sbjct: 5   EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64

Query: 79  -SMWERYCR------AVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
            S  E+  R         +I+ VVDA + + NL ++   +          GIP+ +  N 
Sbjct: 65  YSPAEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIE--------TGIPVTIALNM 116

Query: 131 ID 132
           ID
Sbjct: 117 ID 118


>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
           Sulfate Ion And Gdp
 pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
           Half-Occupacy Gdp
 pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
 pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
           Gmppcp
          Length = 456

 Score = 27.7 bits (60), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 2   GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVI 39
            + E F N   + + ++ ++  LIG  N GK+SLVN +
Sbjct: 178 AVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAM 215


>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
           Mutant (Q63l)
          Length = 184

 Score = 27.7 bits (60), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 10/118 (8%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
           +L ++G    GKT L+ V +   + E  +PTV  N     +V    V + LWD  G   +
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69

Query: 78  RSMWERYCRAVSAIV--YVVDAAD-YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
             +          I+  + +D+ D  +N+P    E      K     +P++++GNK D
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----EKWTPEVKHFCPNVPIILVGNKKD 123


>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
           Thermophilus
 pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
 pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
           Gdp.Alf4- And K+
 pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
           Gdp.Alf4- And K+
          Length = 272

 Score = 27.7 bits (60), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 18/122 (14%)

Query: 21  ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQPRFR- 78
           E++LIG  N+GKTSL N+I          P V    +  + K N  +++ DL G      
Sbjct: 5   EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64

Query: 79  -SMWERYCR------AVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNK 130
            S  E+  R         +I+ VVDA + + NL ++   +          GIP+ +  N 
Sbjct: 65  YSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIE--------TGIPVTIALNM 116

Query: 131 ID 132
           ID
Sbjct: 117 ID 118


>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
           Molecular Basis For Their Inability To Function As
           Signal Switch Molecules
          Length = 166

 Score = 27.7 bits (60), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  G  
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
 pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
 pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
           Protein
          Length = 172

 Score = 27.7 bits (60), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 29/143 (20%), Positives = 65/143 (45%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  P++  + RK  V  G    + + D  GQ 
Sbjct: 9   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQE 68

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +      + +P++++GNK D
Sbjct: 69  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS---DDVPMVLVGNKCD 125

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 126 LAARTVESRQAQDLARSYGIPYI 148


>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
          Length = 166

 Score = 27.7 bits (60), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  G+ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
          Mutant Bound To Mgmppnp
 pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
          Mutant Bound To Gdp
 pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a
          Mutant Bound To Gdp
 pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a
          Mutant Bound To Gdp
 pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a
          Mutant Bound To Gdp
          Length = 272

 Score = 27.3 bits (59), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGG 73
          E++LIG  N+GKTSL N+I          P V    +  + K N  +++ DL G
Sbjct: 5  EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPG 58


>pdb|4ARZ|B Chain B, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
           Gtp-Gdp
          Length = 341

 Score = 27.3 bits (59), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 33/145 (22%)

Query: 24  LIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN-------VTIKLWDLGGQ-- 74
           L+G++  GK+S+  V+       +M P     +   +  +       + + + +L GQ  
Sbjct: 14  LMGVRRCGKSSICKVVF-----HNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLN 68

Query: 75  ---PRFRSMWERYCRAVSAIVYVVDAAD-YDNLPVSRSELHDLLSK--PSLNGIPLLVLG 128
              P + S  ER  ++V A+VYV+D+ D Y N   + + + +   K  PS+N   + VL 
Sbjct: 69  YFEPSYDS--ERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSIN---IEVLI 123

Query: 129 NKID------KPEALSKEDLMEQMG 147
           +K+D      K +A  + D+M++ G
Sbjct: 124 HKVDGLSEDFKVDA--QRDIMQRTG 146


>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
           Mutant
          Length = 166

 Score = 26.9 bits (58), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D   Q 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKXD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-specific Nucleotide Exchange Factor Sos
 pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
          Length = 166

 Score = 26.9 bits (58), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D  GQ 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
              +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKCD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
          Length = 167

 Score = 26.9 bits (58), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 19  EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
           E +L ++G    GK++L   +    + ++  PT+  + RK  V  G    + + D   Q 
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQE 62

Query: 76  RFRSMWERYCRAVSAIVYVV---DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132
            + +M ++Y R     + V    +   ++++   R ++  +  K S + +P++++GNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV--KDS-DDVPMVLVGNKXD 119

Query: 133 ----KPEALSKEDLMEQMGLKSI 151
                 E+   +DL    G+  I
Sbjct: 120 LAARTVESRQAQDLARSYGIPYI 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,427,468
Number of Sequences: 62578
Number of extensions: 208903
Number of successful extensions: 1161
Number of sequences better than 100.0: 390
Number of HSP's better than 100.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 394
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)