Query 029978
Match_columns 184
No_of_seqs 131 out of 1735
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 06:37:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 100.0 6.4E-35 1.4E-39 202.4 21.2 171 12-183 10-180 (181)
2 PTZ00133 ADP-ribosylation fact 100.0 5.8E-35 1.3E-39 202.8 20.9 178 1-182 1-179 (182)
3 KOG0084 GTPase Rab1/YPT1, smal 100.0 1E-36 2.3E-41 204.5 11.3 157 17-182 7-173 (205)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 6.3E-36 1.4E-40 200.3 13.5 163 18-183 21-187 (221)
5 KOG0092 GTPase Rab5/YPT51 and 100.0 7.8E-36 1.7E-40 199.6 10.7 160 17-182 3-168 (200)
6 smart00177 ARF ARF-like small 100.0 6.5E-34 1.4E-38 196.5 20.3 165 16-181 10-174 (175)
7 cd04149 Arf6 Arf6 subfamily. 100.0 4.5E-34 9.8E-39 196.1 18.7 162 16-178 6-167 (168)
8 KOG0075 GTP-binding ADP-ribosy 100.0 1.3E-34 2.7E-39 185.5 14.3 183 1-183 2-184 (186)
9 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.6E-33 3.4E-38 191.8 18.7 158 20-178 1-158 (159)
10 KOG0080 GTPase Rab18, small G 100.0 4.9E-35 1.1E-39 190.1 9.3 162 18-182 10-175 (209)
11 KOG0394 Ras-related GTPase [Ge 100.0 7.7E-35 1.7E-39 193.2 8.6 166 17-182 7-179 (210)
12 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 6.1E-34 1.3E-38 196.1 13.3 159 19-182 2-165 (172)
13 cd04120 Rab12 Rab12 subfamily. 100.0 6.6E-34 1.4E-38 199.8 13.3 157 20-181 1-163 (202)
14 cd04121 Rab40 Rab40 subfamily. 100.0 1.2E-33 2.5E-38 196.8 13.2 158 17-181 4-167 (189)
15 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 3.4E-32 7.5E-37 187.8 20.0 161 17-178 13-173 (174)
16 cd04158 ARD1 ARD1 subfamily. 100.0 2.6E-32 5.5E-37 187.6 19.3 161 21-182 1-162 (169)
17 smart00178 SAR Sar1p-like memb 100.0 6.2E-32 1.3E-36 188.1 20.4 175 2-179 2-183 (184)
18 KOG0078 GTP-binding protein SE 100.0 1.2E-33 2.7E-38 192.3 11.4 163 16-182 9-175 (207)
19 cd04154 Arl2 Arl2 subfamily. 100.0 3.7E-32 8.1E-37 187.5 18.7 161 17-178 12-172 (173)
20 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.9E-33 4.1E-38 194.8 12.2 163 17-181 3-180 (182)
21 cd01875 RhoG RhoG subfamily. 100.0 1.4E-32 3E-37 192.3 16.3 163 18-182 2-178 (191)
22 cd04133 Rop_like Rop subfamily 100.0 2.7E-33 5.9E-38 193.0 12.3 156 20-182 2-174 (176)
23 cd04157 Arl6 Arl6 subfamily. 100.0 6.7E-32 1.4E-36 184.1 18.6 158 21-178 1-161 (162)
24 KOG0098 GTPase Rab2, small G p 100.0 1.8E-33 3.9E-38 187.1 10.3 161 17-181 4-168 (216)
25 cd04136 Rap_like Rap-like subf 100.0 7.6E-33 1.6E-37 189.0 12.9 157 19-180 1-162 (163)
26 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 8E-32 1.7E-36 184.3 17.4 155 22-178 2-163 (164)
27 PTZ00369 Ras-like protein; Pro 100.0 1E-32 2.2E-37 192.8 13.3 161 17-182 3-168 (189)
28 KOG0095 GTPase Rab30, small G 100.0 3.6E-33 7.7E-38 179.5 9.9 159 18-180 6-168 (213)
29 cd04122 Rab14 Rab14 subfamily. 100.0 1.3E-32 2.8E-37 188.6 13.3 157 20-182 3-165 (166)
30 cd04151 Arl1 Arl1 subfamily. 100.0 1.4E-31 3E-36 182.1 18.2 157 21-178 1-157 (158)
31 cd04175 Rap1 Rap1 subgroup. T 100.0 1.1E-32 2.5E-37 188.5 12.3 158 19-181 1-163 (164)
32 cd04127 Rab27A Rab27a subfamil 100.0 2.4E-32 5.2E-37 189.5 13.9 160 18-182 3-178 (180)
33 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.3E-31 2.9E-36 188.9 17.3 159 20-182 1-169 (201)
34 cd04126 Rab20 Rab20 subfamily. 100.0 3.4E-32 7.3E-37 193.2 14.3 160 20-181 1-190 (220)
35 cd04131 Rnd Rnd subfamily. Th 100.0 1.4E-32 3E-37 190.1 11.8 161 19-181 1-176 (178)
36 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.4E-31 3.1E-36 184.7 16.7 159 20-180 2-174 (175)
37 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.2E-32 2.5E-37 186.9 10.8 162 16-181 11-176 (222)
38 cd04161 Arl2l1_Arl13_like Arl2 100.0 4.4E-31 9.6E-36 181.1 18.8 157 21-178 1-166 (167)
39 PF00025 Arf: ADP-ribosylation 100.0 2.8E-31 6E-36 183.2 17.3 172 8-180 2-175 (175)
40 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 5.9E-31 1.3E-35 183.0 18.8 164 18-182 2-171 (183)
41 cd04117 Rab15 Rab15 subfamily. 100.0 4.1E-32 9E-37 185.2 12.7 155 20-179 1-160 (161)
42 cd00877 Ran Ran (Ras-related n 100.0 1.9E-31 4.1E-36 182.8 16.0 156 20-182 1-160 (166)
43 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.6E-31 3.4E-36 182.1 15.4 157 19-180 1-161 (162)
44 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 4.2E-32 9.2E-37 193.7 13.1 163 18-182 12-189 (232)
45 cd00879 Sar1 Sar1 subfamily. 100.0 2E-30 4.3E-35 181.4 21.2 162 17-179 17-189 (190)
46 cd04145 M_R_Ras_like M-Ras/R-R 100.0 5.6E-32 1.2E-36 184.9 13.0 157 19-180 2-163 (164)
47 cd01867 Rab8_Rab10_Rab13_like 100.0 7E-32 1.5E-36 185.1 13.4 159 18-182 2-166 (167)
48 smart00173 RAS Ras subfamily o 100.0 5.7E-32 1.2E-36 184.9 12.8 158 20-182 1-163 (164)
49 cd04128 Spg1 Spg1p. Spg1p (se 100.0 9.2E-32 2E-36 186.7 13.9 160 20-182 1-167 (182)
50 cd04144 Ras2 Ras2 subfamily. 100.0 3E-32 6.4E-37 190.6 11.4 157 21-182 1-164 (190)
51 cd04159 Arl10_like Arl10-like 100.0 1E-30 2.3E-35 177.2 18.7 157 22-178 2-158 (159)
52 cd04119 RJL RJL (RabJ-Like) su 100.0 6.7E-32 1.5E-36 185.0 12.9 157 20-181 1-167 (168)
53 cd04176 Rap2 Rap2 subgroup. T 100.0 4.8E-32 1E-36 185.1 12.1 158 19-180 1-162 (163)
54 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.1E-31 2.3E-36 184.6 13.8 158 21-182 2-166 (170)
55 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.3E-30 2.9E-35 177.1 18.6 157 21-178 1-157 (158)
56 cd01871 Rac1_like Rac1-like su 100.0 4.1E-31 9E-36 182.3 15.9 158 20-179 2-173 (174)
57 cd01865 Rab3 Rab3 subfamily. 100.0 1.3E-31 2.8E-36 183.4 13.3 157 20-182 2-164 (165)
58 PLN03071 GTP-binding nuclear p 100.0 5E-31 1.1E-35 188.0 16.3 157 17-181 11-172 (219)
59 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.3E-31 2.8E-36 190.3 13.2 161 20-181 2-176 (222)
60 cd04140 ARHI_like ARHI subfami 100.0 1.1E-31 2.3E-36 183.9 12.4 155 20-179 2-163 (165)
61 cd04111 Rab39 Rab39 subfamily. 100.0 1.9E-31 4.1E-36 189.1 13.4 159 19-182 2-167 (211)
62 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.5E-31 5.5E-36 182.1 13.2 158 19-182 2-165 (166)
63 cd04134 Rho3 Rho3 subfamily. 100.0 5.3E-31 1.2E-35 184.1 15.0 161 20-182 1-175 (189)
64 cd04109 Rab28 Rab28 subfamily. 100.0 3.4E-31 7.4E-36 188.5 14.0 158 20-182 1-167 (215)
65 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.9E-30 6.3E-35 176.9 18.1 158 21-178 1-166 (167)
66 cd04156 ARLTS1 ARLTS1 subfamil 100.0 3E-30 6.4E-35 175.7 17.9 157 21-178 1-159 (160)
67 cd04124 RabL2 RabL2 subfamily. 100.0 1.2E-30 2.7E-35 177.9 15.8 157 20-184 1-161 (161)
68 cd01864 Rab19 Rab19 subfamily. 100.0 4.4E-30 9.5E-35 175.8 17.7 158 18-180 2-165 (165)
69 KOG0079 GTP-binding protein H- 100.0 4.5E-32 9.8E-37 174.0 7.1 159 19-182 8-170 (198)
70 KOG0093 GTPase Rab3, small G p 100.0 1.3E-31 2.7E-36 171.8 9.0 156 18-182 20-184 (193)
71 cd04103 Centaurin_gamma Centau 100.0 9.3E-31 2E-35 177.8 13.5 152 20-179 1-157 (158)
72 cd04110 Rab35 Rab35 subfamily. 100.0 9.9E-31 2.1E-35 184.1 13.7 158 17-181 4-167 (199)
73 cd01866 Rab2 Rab2 subfamily. 100.0 9.7E-31 2.1E-35 179.6 13.4 158 19-182 4-167 (168)
74 cd04112 Rab26 Rab26 subfamily. 100.0 7.9E-31 1.7E-35 183.6 13.0 158 20-183 1-165 (191)
75 cd04106 Rab23_lke Rab23-like s 100.0 7.1E-31 1.5E-35 179.1 12.4 153 20-179 1-161 (162)
76 cd04116 Rab9 Rab9 subfamily. 100.0 1.4E-30 3.1E-35 179.0 14.0 158 18-179 4-169 (170)
77 cd04155 Arl3 Arl3 subfamily. 100.0 1.8E-29 3.8E-34 174.1 19.5 162 16-178 11-172 (173)
78 cd04115 Rab33B_Rab33A Rab33B/R 100.0 9.4E-31 2E-35 180.0 12.8 159 19-181 2-169 (170)
79 cd01868 Rab11_like Rab11-like. 100.0 1.1E-30 2.4E-35 178.7 13.0 156 19-180 3-164 (165)
80 PLN03110 Rab GTPase; Provision 100.0 1.3E-30 2.8E-35 185.6 13.6 161 17-182 10-175 (216)
81 cd04113 Rab4 Rab4 subfamily. 100.0 9.6E-31 2.1E-35 178.4 12.0 154 20-179 1-160 (161)
82 cd04143 Rhes_like Rhes_like su 100.0 7.9E-30 1.7E-34 184.3 17.1 158 20-181 1-171 (247)
83 cd04125 RabA_like RabA-like su 100.0 1.5E-30 3.3E-35 181.7 13.0 157 20-182 1-163 (188)
84 KOG0086 GTPase Rab4, small G p 100.0 1.7E-30 3.8E-35 167.7 12.1 160 17-180 7-170 (214)
85 smart00176 RAN Ran (Ras-relate 100.0 3.7E-30 8.1E-35 180.6 14.8 151 25-182 1-155 (200)
86 cd04132 Rho4_like Rho4-like su 100.0 7.9E-30 1.7E-34 177.9 16.2 156 20-182 1-168 (187)
87 cd04177 RSR1 RSR1 subgroup. R 100.0 1.9E-30 4.1E-35 178.2 12.4 158 19-180 1-163 (168)
88 KOG0070 GTP-binding ADP-ribosy 100.0 8.4E-30 1.8E-34 170.2 14.8 170 13-183 11-180 (181)
89 cd04101 RabL4 RabL4 (Rab-like4 100.0 3.2E-30 6.9E-35 176.3 12.8 155 20-180 1-163 (164)
90 cd01861 Rab6 Rab6 subfamily. 100.0 3.2E-30 6.9E-35 175.7 12.4 155 20-180 1-161 (161)
91 smart00174 RHO Rho (Ras homolo 100.0 2.3E-30 4.9E-35 178.7 11.4 159 22-182 1-173 (174)
92 PF00071 Ras: Ras family; Int 100.0 8.9E-31 1.9E-35 178.7 8.9 155 21-181 1-161 (162)
93 cd04135 Tc10 TC10 subfamily. 100.0 1.6E-29 3.5E-34 174.4 15.2 160 20-180 1-173 (174)
94 cd01862 Rab7 Rab7 subfamily. 100.0 3.7E-29 7.9E-34 172.2 16.9 159 20-182 1-168 (172)
95 cd01860 Rab5_related Rab5-rela 100.0 7.8E-30 1.7E-34 174.1 13.0 156 19-180 1-162 (163)
96 cd04139 RalA_RalB RalA/RalB su 100.0 6.7E-30 1.5E-34 174.5 12.6 158 20-182 1-163 (164)
97 cd04142 RRP22 RRP22 subfamily. 100.0 9.6E-30 2.1E-34 178.6 13.5 159 20-181 1-174 (198)
98 smart00175 RAB Rab subfamily o 100.0 8E-30 1.7E-34 174.1 12.6 157 20-182 1-163 (164)
99 cd04146 RERG_RasL11_like RERG/ 100.0 4E-30 8.8E-35 176.0 10.5 156 21-181 1-164 (165)
100 cd01892 Miro2 Miro2 subfamily. 100.0 6.9E-29 1.5E-33 170.5 16.6 156 17-182 2-167 (169)
101 PLN03108 Rab family protein; P 100.0 1.4E-29 3E-34 179.6 13.5 159 17-181 4-168 (210)
102 cd04118 Rab24 Rab24 subfamily. 100.0 1.3E-29 2.9E-34 177.7 13.3 156 20-182 1-167 (193)
103 cd01863 Rab18 Rab18 subfamily. 100.0 4.4E-29 9.6E-34 170.1 15.5 155 20-179 1-160 (161)
104 cd04130 Wrch_1 Wrch-1 subfamil 100.0 4.6E-30 9.9E-35 177.1 10.5 157 20-178 1-171 (173)
105 KOG0091 GTPase Rab39, small G 100.0 5.7E-30 1.2E-34 167.0 9.9 161 18-181 7-173 (213)
106 cd01893 Miro1 Miro1 subfamily. 100.0 3.3E-29 7.1E-34 171.7 14.3 159 20-181 1-164 (166)
107 cd04148 RGK RGK subfamily. Th 100.0 1.3E-29 2.9E-34 180.9 12.7 155 20-181 1-163 (221)
108 cd01873 RhoBTB RhoBTB subfamil 100.0 7.6E-30 1.7E-34 178.6 11.2 157 19-179 2-194 (195)
109 PLN03118 Rab family protein; P 100.0 2.3E-29 4.9E-34 178.8 13.7 161 15-181 10-177 (211)
110 KOG0073 GTP-binding ADP-ribosy 100.0 3.6E-28 7.8E-33 158.6 17.2 166 16-182 13-179 (185)
111 cd01870 RhoA_like RhoA-like su 100.0 8.2E-29 1.8E-33 171.0 14.5 159 20-180 2-174 (175)
112 cd04123 Rab21 Rab21 subfamily. 100.0 4.5E-29 9.8E-34 170.0 12.5 155 20-180 1-161 (162)
113 KOG0088 GTPase Rab21, small G 100.0 3.2E-30 7E-35 167.4 5.3 160 18-181 12-175 (218)
114 cd04114 Rab30 Rab30 subfamily. 100.0 1.2E-28 2.5E-33 169.3 13.1 159 17-180 5-168 (169)
115 cd04137 RheB Rheb (Ras Homolog 100.0 8E-29 1.7E-33 171.9 12.0 158 20-182 2-164 (180)
116 cd04147 Ras_dva Ras-dva subfam 100.0 3.9E-28 8.5E-33 170.8 15.4 157 21-181 1-163 (198)
117 cd00157 Rho Rho (Ras homology) 100.0 1.4E-28 3.1E-33 169.1 10.6 158 20-178 1-170 (171)
118 cd00876 Ras Ras family. The R 100.0 3.6E-28 7.8E-33 165.2 12.3 155 21-180 1-160 (160)
119 KOG0071 GTP-binding ADP-ribosy 100.0 5.6E-27 1.2E-31 149.3 16.5 170 12-182 10-179 (180)
120 cd00154 Rab Rab family. Rab G 100.0 4E-27 8.7E-32 159.5 15.9 153 20-178 1-159 (159)
121 cd04129 Rho2 Rho2 subfamily. 100.0 2.3E-27 5E-32 165.5 14.5 156 20-181 2-173 (187)
122 KOG0395 Ras-related GTPase [Ge 100.0 5.3E-28 1.2E-32 168.5 10.8 162 18-182 2-166 (196)
123 PTZ00132 GTP-binding nuclear p 100.0 1.3E-26 2.8E-31 165.1 17.1 160 16-182 6-169 (215)
124 KOG0081 GTPase Rab27, small G 99.9 2.5E-29 5.3E-34 163.4 1.5 160 20-182 10-182 (219)
125 cd04102 RabL3 RabL3 (Rab-like3 99.9 7.9E-27 1.7E-31 163.7 13.8 117 20-136 1-144 (202)
126 cd01898 Obg Obg subfamily. Th 99.9 1.3E-25 2.8E-30 154.3 16.2 157 21-180 2-170 (170)
127 cd01897 NOG NOG1 is a nucleola 99.9 2.1E-25 4.6E-30 152.9 16.5 153 21-180 2-167 (168)
128 KOG0393 Ras-related small GTPa 99.9 5.6E-27 1.2E-31 160.4 8.0 163 18-182 3-180 (198)
129 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.1E-28 2.4E-33 156.0 -0.5 151 23-182 1-161 (192)
130 KOG0097 GTPase Rab14, small G 99.9 2.7E-26 5.9E-31 146.7 10.2 155 18-181 10-173 (215)
131 cd04171 SelB SelB subfamily. 99.9 1.5E-25 3.2E-30 153.0 13.7 152 21-178 2-163 (164)
132 cd01890 LepA LepA subfamily. 99.9 6.4E-25 1.4E-29 152.1 16.8 151 21-181 2-177 (179)
133 cd01878 HflX HflX subfamily. 99.9 2.1E-24 4.6E-29 152.5 17.0 154 17-180 39-204 (204)
134 PRK04213 GTP-binding protein; 99.9 2.1E-25 4.5E-30 157.4 11.6 161 17-183 7-194 (201)
135 TIGR00231 small_GTP small GTP- 99.9 4.8E-24 1E-28 144.1 17.1 153 20-177 2-160 (161)
136 PRK15494 era GTPase Era; Provi 99.9 3E-24 6.5E-29 161.8 17.6 156 18-182 51-217 (339)
137 PRK12299 obgE GTPase CgtA; Rev 99.9 2.1E-24 4.5E-29 161.8 15.9 159 20-182 159-329 (335)
138 KOG0076 GTP-binding ADP-ribosy 99.9 1.6E-25 3.5E-30 147.6 8.6 172 12-183 10-189 (197)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 4.7E-24 1E-28 146.2 16.0 156 21-182 2-167 (168)
140 TIGR00436 era GTP-binding prot 99.9 4.3E-24 9.2E-29 156.9 16.1 153 21-182 2-165 (270)
141 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.5E-23 5.5E-28 140.8 17.4 145 19-180 1-156 (157)
142 PRK03003 GTP-binding protein D 99.9 1.5E-23 3.3E-28 164.6 18.3 160 18-182 210-383 (472)
143 cd00881 GTP_translation_factor 99.9 2E-23 4.4E-28 145.5 16.7 156 21-181 1-187 (189)
144 COG1100 GTPase SAR1 and relate 99.9 1.1E-23 2.3E-28 150.5 15.4 163 19-181 5-185 (219)
145 PLN00023 GTP-binding protein; 99.9 4.8E-24 1E-28 156.8 13.5 122 15-136 17-166 (334)
146 cd01881 Obg_like The Obg-like 99.9 4.8E-24 1E-28 147.1 12.7 153 24-179 1-175 (176)
147 TIGR02528 EutP ethanolamine ut 99.9 4.2E-24 9E-29 142.7 11.8 134 21-177 2-141 (142)
148 cd01891 TypA_BipA TypA (tyrosi 99.9 3E-23 6.4E-28 145.6 16.4 146 20-170 3-171 (194)
149 KOG0072 GTP-binding ADP-ribosy 99.9 3.9E-24 8.4E-29 137.0 10.3 171 12-183 10-181 (182)
150 TIGR03156 GTP_HflX GTP-binding 99.9 5.2E-23 1.1E-27 155.4 18.2 151 18-179 188-350 (351)
151 PRK05291 trmE tRNA modificatio 99.9 3.8E-23 8.2E-28 161.0 17.9 147 17-181 213-370 (449)
152 PF00009 GTP_EFTU: Elongation 99.9 3.8E-23 8.3E-28 144.3 15.8 158 18-181 2-187 (188)
153 cd01889 SelB_euk SelB subfamil 99.9 2.8E-23 6.1E-28 145.5 15.0 157 20-181 1-186 (192)
154 TIGR03594 GTPase_EngA ribosome 99.9 7.8E-23 1.7E-27 159.4 19.0 159 19-182 172-345 (429)
155 KOG4252 GTP-binding protein [S 99.9 5.5E-26 1.2E-30 150.7 1.0 159 17-182 18-182 (246)
156 KOG0074 GTP-binding ADP-ribosy 99.9 1.7E-23 3.6E-28 133.7 11.8 176 4-181 3-179 (185)
157 PTZ00099 rab6; Provisional 99.9 4E-24 8.7E-29 147.4 9.7 135 42-182 3-143 (176)
158 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.7E-22 3.7E-27 156.6 19.8 153 14-182 198-361 (442)
159 TIGR02729 Obg_CgtA Obg family 99.9 5.5E-23 1.2E-27 154.0 16.3 157 20-180 158-328 (329)
160 cd01888 eIF2_gamma eIF2-gamma 99.9 2.3E-23 4.9E-28 147.0 13.2 160 20-182 1-200 (203)
161 PRK03003 GTP-binding protein D 99.9 1E-22 2.2E-27 159.9 17.8 153 18-182 37-200 (472)
162 cd00882 Ras_like_GTPase Ras-li 99.9 1.8E-23 4E-28 140.1 11.7 150 24-177 1-156 (157)
163 cd01894 EngA1 EngA1 subfamily. 99.9 1E-22 2.2E-27 137.9 15.0 145 23-179 1-156 (157)
164 cd01895 EngA2 EngA2 subfamily. 99.9 4.7E-22 1E-26 136.6 18.0 156 19-179 2-173 (174)
165 PRK00454 engB GTP-binding prot 99.9 8.2E-23 1.8E-27 143.5 14.4 163 14-182 19-195 (196)
166 COG1159 Era GTPase [General fu 99.9 7.3E-23 1.6E-27 147.0 14.2 157 18-182 5-173 (298)
167 cd01879 FeoB Ferrous iron tran 99.9 1.5E-22 3.2E-27 137.4 14.2 147 24-181 1-157 (158)
168 PRK15467 ethanolamine utilizat 99.9 1.5E-22 3.3E-27 137.4 12.6 142 21-182 3-148 (158)
169 PRK12296 obgE GTPase CgtA; Rev 99.9 3E-22 6.5E-27 155.6 15.4 160 19-183 159-342 (500)
170 PRK12297 obgE GTPase CgtA; Rev 99.9 9.3E-22 2E-26 151.1 17.5 155 20-182 159-328 (424)
171 TIGR01393 lepA GTP-binding pro 99.9 1E-21 2.3E-26 157.1 18.1 153 20-182 4-181 (595)
172 PF02421 FeoB_N: Ferrous iron 99.9 2.3E-22 5E-27 134.4 11.7 142 20-176 1-156 (156)
173 PRK00089 era GTPase Era; Revie 99.9 8.4E-22 1.8E-26 146.4 16.1 156 18-181 4-171 (292)
174 PRK09518 bifunctional cytidyla 99.9 1.2E-21 2.7E-26 160.3 17.9 159 19-182 450-622 (712)
175 TIGR00487 IF-2 translation ini 99.9 4.4E-22 9.6E-27 158.6 14.8 156 17-178 85-247 (587)
176 cd04105 SR_beta Signal recogni 99.9 1.7E-21 3.8E-26 137.3 15.9 157 21-178 2-202 (203)
177 TIGR03594 GTPase_EngA ribosome 99.9 1.7E-21 3.6E-26 152.0 17.3 149 21-181 1-160 (429)
178 PRK00093 GTP-binding protein D 99.9 2E-21 4.2E-26 151.8 17.6 148 20-179 2-160 (435)
179 cd04163 Era Era subfamily. Er 99.9 1.8E-21 3.8E-26 132.8 15.2 153 19-179 3-167 (168)
180 PRK00093 GTP-binding protein D 99.9 2.1E-21 4.5E-26 151.7 17.0 159 18-181 172-344 (435)
181 PRK11058 GTPase HflX; Provisio 99.9 4.3E-21 9.3E-26 148.1 18.4 154 20-181 198-362 (426)
182 TIGR03598 GTPase_YsxC ribosome 99.9 6.9E-22 1.5E-26 137.0 11.8 150 12-170 11-179 (179)
183 cd00880 Era_like Era (E. coli 99.9 1.5E-21 3.3E-26 131.9 13.2 152 24-180 1-163 (163)
184 PRK05306 infB translation init 99.9 1.4E-21 3.1E-26 159.3 15.2 158 16-179 287-450 (787)
185 COG1160 Predicted GTPases [Gen 99.9 2.3E-21 5.1E-26 146.4 15.2 149 20-180 4-164 (444)
186 TIGR00475 selB selenocysteine- 99.9 1.6E-21 3.5E-26 155.9 14.0 158 20-182 1-167 (581)
187 PRK12298 obgE GTPase CgtA; Rev 99.9 6.4E-21 1.4E-25 145.6 16.4 160 21-182 161-334 (390)
188 cd01884 EF_Tu EF-Tu subfamily. 99.9 4.6E-21 1E-25 134.0 14.2 156 19-179 2-191 (195)
189 PRK09518 bifunctional cytidyla 99.9 8.7E-21 1.9E-25 155.4 17.7 152 19-182 275-437 (712)
190 PF08477 Miro: Miro-like prote 99.9 1.8E-22 3.9E-27 130.9 6.2 110 21-132 1-119 (119)
191 CHL00189 infB translation init 99.9 1.2E-20 2.6E-25 152.7 17.5 159 16-180 241-409 (742)
192 PRK05433 GTP-binding protein L 99.9 1.7E-20 3.6E-25 150.4 17.8 155 18-182 6-185 (600)
193 PRK12317 elongation factor 1-a 99.9 6.2E-21 1.3E-25 148.4 14.8 153 17-171 4-195 (425)
194 cd04168 TetM_like Tet(M)-like 99.9 1.7E-20 3.6E-25 135.0 15.6 156 21-181 1-235 (237)
195 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 8.9E-22 1.9E-26 131.8 8.3 157 18-181 9-169 (216)
196 KOG1673 Ras GTPases [General f 99.9 5.9E-22 1.3E-26 128.6 6.7 161 19-181 20-186 (205)
197 COG2229 Predicted GTPase [Gene 99.9 4.8E-20 1.1E-24 123.3 15.9 156 17-179 8-176 (187)
198 TIGR00483 EF-1_alpha translati 99.9 6.6E-21 1.4E-25 148.2 13.6 153 17-171 5-197 (426)
199 COG1160 Predicted GTPases [Gen 99.9 4.6E-20 1E-24 139.5 16.3 159 19-182 178-352 (444)
200 TIGR01394 TypA_BipA GTP-bindin 99.9 3.4E-20 7.4E-25 148.2 16.1 157 21-182 3-192 (594)
201 TIGR03680 eif2g_arch translati 99.9 1.9E-20 4.2E-25 144.5 13.8 162 17-181 2-196 (406)
202 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.8E-20 6.1E-25 131.7 13.2 147 21-171 1-184 (208)
203 cd01883 EF1_alpha Eukaryotic e 99.8 1.8E-20 3.9E-25 133.7 12.0 147 21-170 1-194 (219)
204 PRK10218 GTP-binding protein; 99.8 1E-19 2.2E-24 145.5 16.9 160 17-181 3-195 (607)
205 PRK10512 selenocysteinyl-tRNA- 99.8 3.9E-20 8.5E-25 148.5 14.2 157 20-181 1-166 (614)
206 cd01896 DRG The developmentall 99.8 2E-19 4.4E-24 129.2 16.4 151 21-181 2-226 (233)
207 TIGR00491 aIF-2 translation in 99.8 7.6E-20 1.6E-24 145.8 15.4 156 20-180 5-215 (590)
208 COG0486 ThdF Predicted GTPase 99.8 3.5E-19 7.7E-24 135.1 18.2 155 13-181 211-376 (454)
209 PRK04000 translation initiatio 99.8 6.8E-20 1.5E-24 141.5 14.1 162 17-181 7-201 (411)
210 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.3E-19 2.8E-24 129.3 14.4 153 21-178 1-220 (224)
211 PF10662 PduV-EutP: Ethanolami 99.8 9.7E-20 2.1E-24 119.2 12.3 135 21-177 3-142 (143)
212 cd01876 YihA_EngB The YihA (En 99.8 1.4E-19 3E-24 123.7 12.9 154 21-180 1-170 (170)
213 PRK09554 feoB ferrous iron tra 99.8 3E-19 6.4E-24 146.3 16.6 152 18-180 2-167 (772)
214 cd04169 RF3 RF3 subfamily. Pe 99.8 2.7E-19 5.9E-24 130.8 14.0 112 20-136 3-138 (267)
215 KOG0077 Vesicle coat complex C 99.8 1.8E-19 3.9E-24 118.3 11.1 175 3-180 6-192 (193)
216 TIGR00437 feoB ferrous iron tr 99.8 2.2E-19 4.8E-24 143.9 13.8 140 26-180 1-154 (591)
217 PRK12736 elongation factor Tu; 99.8 5.7E-19 1.2E-23 135.9 14.8 161 16-181 9-201 (394)
218 COG0218 Predicted GTPase [Gene 99.8 1.4E-18 2.9E-23 118.9 14.9 164 10-183 15-199 (200)
219 PRK04004 translation initiatio 99.8 7.9E-19 1.7E-23 140.4 16.0 155 18-180 5-217 (586)
220 KOG1707 Predicted Ras related/ 99.8 1.4E-19 3.1E-24 139.5 8.9 163 16-181 6-175 (625)
221 cd04170 EF-G_bact Elongation f 99.8 5.8E-18 1.3E-22 124.4 16.7 111 21-136 1-131 (268)
222 PRK12735 elongation factor Tu; 99.8 1.4E-18 3.1E-23 133.8 14.1 159 17-180 10-202 (396)
223 PRK00741 prfC peptide chain re 99.8 1.8E-18 3.8E-23 136.8 14.6 115 17-136 8-146 (526)
224 cd01886 EF-G Elongation factor 99.8 2.2E-18 4.8E-23 126.1 14.1 138 21-164 1-158 (270)
225 TIGR00485 EF-Tu translation el 99.8 1.8E-18 3.8E-23 133.3 13.8 158 17-179 10-199 (394)
226 cd04104 p47_IIGP_like p47 (47- 99.8 1.7E-18 3.7E-23 121.7 12.2 157 19-182 1-185 (197)
227 COG1084 Predicted GTPase [Gene 99.8 1.2E-17 2.7E-22 121.4 16.7 171 3-180 150-335 (346)
228 cd04167 Snu114p Snu114p subfam 99.8 1.6E-18 3.4E-23 123.3 11.8 156 21-181 2-211 (213)
229 CHL00071 tufA elongation facto 99.8 2.8E-18 6.1E-23 132.7 13.9 147 17-168 10-180 (409)
230 KOG1423 Ras-like GTPase ERA [C 99.8 5E-18 1.1E-22 122.2 13.9 161 17-181 70-271 (379)
231 PLN00043 elongation factor 1-a 99.8 4.6E-18 9.9E-23 132.4 13.8 149 17-170 5-202 (447)
232 cd01885 EF2 EF2 (for archaea a 99.8 8.1E-18 1.8E-22 119.6 13.6 109 21-134 2-138 (222)
233 PRK00049 elongation factor Tu; 99.8 7.2E-18 1.6E-22 129.8 14.4 159 17-180 10-202 (396)
234 PRK13351 elongation factor G; 99.8 1.4E-17 3.1E-22 136.4 16.6 115 17-136 6-140 (687)
235 PRK05124 cysN sulfate adenylyl 99.8 6.7E-18 1.4E-22 132.4 13.6 154 15-172 23-216 (474)
236 PLN03126 Elongation factor Tu; 99.8 1.1E-17 2.5E-22 130.8 14.8 147 17-168 79-249 (478)
237 PRK05506 bifunctional sulfate 99.8 9.7E-18 2.1E-22 136.1 14.6 162 6-171 11-211 (632)
238 TIGR00503 prfC peptide chain r 99.8 2.9E-17 6.3E-22 130.0 16.8 115 16-135 8-146 (527)
239 PTZ00141 elongation factor 1- 99.8 7.3E-18 1.6E-22 131.3 13.1 151 17-171 5-203 (446)
240 COG0532 InfB Translation initi 99.8 1.1E-17 2.3E-22 128.7 12.8 158 18-181 4-170 (509)
241 KOG3883 Ras family small GTPas 99.8 3.1E-17 6.7E-22 106.5 12.7 165 15-182 5-176 (198)
242 TIGR02034 CysN sulfate adenyly 99.8 7.1E-18 1.5E-22 130.3 11.7 148 20-171 1-187 (406)
243 PLN03127 Elongation factor Tu; 99.8 2.7E-17 5.8E-22 128.0 14.8 161 16-181 58-252 (447)
244 KOG0462 Elongation factor-type 99.8 1.2E-17 2.7E-22 128.2 12.0 158 17-181 58-235 (650)
245 PTZ00327 eukaryotic translatio 99.7 4.2E-17 9.1E-22 126.9 14.0 162 17-181 32-233 (460)
246 COG0370 FeoB Fe2+ transport sy 99.7 7.2E-17 1.6E-21 127.5 15.1 149 18-181 2-164 (653)
247 COG1163 DRG Predicted GTPase [ 99.7 6.6E-17 1.4E-21 117.4 13.5 152 20-181 64-289 (365)
248 KOG1489 Predicted GTP-binding 99.7 5.4E-17 1.2E-21 117.4 12.7 155 20-179 197-365 (366)
249 KOG1145 Mitochondrial translat 99.7 9.4E-17 2E-21 123.5 13.5 158 17-181 151-316 (683)
250 KOG0090 Signal recognition par 99.7 3.4E-16 7.3E-21 107.3 14.1 167 12-180 31-238 (238)
251 cd01899 Ygr210 Ygr210 subfamil 99.7 3.3E-16 7.2E-21 116.8 14.2 155 22-182 1-270 (318)
252 TIGR00484 EF-G translation elo 99.7 3.1E-16 6.7E-21 128.5 15.3 144 17-166 8-171 (689)
253 COG5256 TEF1 Translation elong 99.7 9.1E-17 2E-21 120.2 10.3 153 17-171 5-201 (428)
254 KOG4423 GTP-binding protein-li 99.7 3.5E-19 7.6E-24 119.1 -2.9 161 20-181 26-194 (229)
255 COG0481 LepA Membrane GTPase L 99.7 1.9E-16 4.1E-21 120.1 11.3 154 19-182 9-187 (603)
256 PF01926 MMR_HSR1: 50S ribosom 99.7 3.4E-16 7.5E-21 100.9 10.9 103 21-130 1-116 (116)
257 COG2262 HflX GTPases [General 99.7 3E-15 6.6E-20 112.1 17.1 155 18-181 191-356 (411)
258 cd00066 G-alpha G protein alph 99.7 9.3E-16 2E-20 114.9 13.8 130 53-182 150-312 (317)
259 PF09439 SRPRB: Signal recogni 99.7 5E-17 1.1E-21 111.1 6.4 121 19-139 3-130 (181)
260 PRK12739 elongation factor G; 99.7 6.8E-16 1.5E-20 126.5 13.9 145 16-166 5-169 (691)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2.5E-15 5.3E-20 105.6 14.0 162 20-183 1-186 (196)
262 KOG1191 Mitochondrial GTPase [ 99.7 4.6E-15 1E-19 113.0 15.7 166 16-181 265-450 (531)
263 PRK12740 elongation factor G; 99.7 2.9E-15 6.3E-20 122.7 15.7 107 25-136 1-127 (668)
264 PRK09866 hypothetical protein; 99.7 6E-15 1.3E-19 116.7 16.6 111 65-178 231-350 (741)
265 smart00275 G_alpha G protein a 99.7 1.6E-15 3.4E-20 114.6 12.6 128 55-182 175-335 (342)
266 PRK00007 elongation factor G; 99.7 1.5E-15 3.3E-20 124.4 13.2 144 17-166 8-171 (693)
267 COG0536 Obg Predicted GTPase [ 99.7 2.7E-15 6E-20 109.8 12.6 159 21-182 161-334 (369)
268 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 5.5E-16 1.2E-20 110.4 7.8 157 21-179 1-174 (232)
269 KOG1490 GTP-binding protein CR 99.6 9.9E-16 2.2E-20 116.8 7.7 177 3-181 150-341 (620)
270 PRK09435 membrane ATPase/prote 99.6 5.1E-15 1.1E-19 110.6 10.9 108 62-181 147-260 (332)
271 COG3596 Predicted GTPase [Gene 99.6 1.1E-14 2.4E-19 103.9 11.9 166 13-181 33-222 (296)
272 PRK09602 translation-associate 99.6 1.4E-14 3.1E-19 111.1 13.2 79 20-98 2-113 (396)
273 COG1217 TypA Predicted membran 99.6 1.4E-14 3.1E-19 109.8 11.7 159 19-182 5-196 (603)
274 COG4917 EutP Ethanolamine util 99.6 1.2E-14 2.6E-19 91.5 9.3 138 21-179 3-144 (148)
275 COG5257 GCD11 Translation init 99.6 4.3E-15 9.3E-20 107.9 7.8 161 17-182 8-203 (415)
276 PRK13768 GTPase; Provisional 99.6 3.8E-15 8.3E-20 108.3 7.5 116 65-181 98-247 (253)
277 COG2895 CysN GTPases - Sulfate 99.6 1.6E-14 3.5E-19 106.1 10.1 150 17-170 4-192 (431)
278 cd01850 CDC_Septin CDC/Septin. 99.6 3E-14 6.5E-19 104.8 11.5 112 18-135 3-157 (276)
279 TIGR00490 aEF-2 translation el 99.6 5.9E-14 1.3E-18 115.5 12.9 113 18-135 18-152 (720)
280 cd01882 BMS1 Bms1. Bms1 is an 99.6 9.4E-14 2E-18 99.4 11.9 143 16-167 36-182 (225)
281 PRK14845 translation initiatio 99.6 2.2E-13 4.7E-18 114.3 15.6 145 31-180 473-672 (1049)
282 PRK07560 elongation factor EF- 99.6 1.3E-13 2.9E-18 113.7 14.1 126 5-135 4-153 (731)
283 KOG0082 G-protein alpha subuni 99.5 1.3E-13 2.8E-18 102.7 12.2 134 49-182 180-345 (354)
284 TIGR00101 ureG urease accessor 99.5 6.2E-13 1.4E-17 93.3 13.3 103 64-181 92-196 (199)
285 PF03308 ArgK: ArgK protein; 99.5 1.5E-14 3.2E-19 103.1 4.9 108 62-181 120-230 (266)
286 COG3276 SelB Selenocysteine-sp 99.5 2.1E-13 4.5E-18 103.1 11.2 155 21-180 2-161 (447)
287 PF03029 ATP_bind_1: Conserved 99.5 4.2E-14 9.1E-19 101.7 6.9 115 65-180 92-236 (238)
288 COG1703 ArgK Putative periplas 99.5 1.1E-13 2.3E-18 100.1 8.8 107 63-181 143-254 (323)
289 PLN00116 translation elongatio 99.5 2.9E-13 6.2E-18 113.1 12.2 113 17-134 17-163 (843)
290 PTZ00416 elongation factor 2; 99.5 1.4E-13 3.1E-18 114.7 9.5 113 17-134 17-157 (836)
291 COG4108 PrfC Peptide chain rel 99.5 1.2E-13 2.6E-18 104.2 8.0 115 17-136 10-148 (528)
292 PF05049 IIGP: Interferon-indu 99.5 5.3E-13 1.1E-17 100.7 11.3 159 17-182 33-219 (376)
293 KOG1532 GTPase XAB1, interacts 99.5 2E-13 4.3E-18 97.4 8.2 120 64-183 116-266 (366)
294 KOG0458 Elongation factor 1 al 99.5 4.6E-13 1E-17 104.0 10.4 153 17-171 175-372 (603)
295 cd01853 Toc34_like Toc34-like 99.5 2.7E-12 5.8E-17 93.0 13.6 121 15-136 27-164 (249)
296 TIGR00991 3a0901s02IAP34 GTP-b 99.5 7.8E-12 1.7E-16 92.2 15.4 118 17-135 36-167 (313)
297 TIGR00073 hypB hydrogenase acc 99.4 7.4E-13 1.6E-17 93.8 9.3 151 15-180 18-206 (207)
298 TIGR00750 lao LAO/AO transport 99.4 7.1E-12 1.5E-16 93.5 14.4 107 63-181 126-238 (300)
299 KOG3905 Dynein light intermedi 99.4 8.1E-13 1.7E-17 96.4 9.0 163 17-180 50-289 (473)
300 COG0480 FusA Translation elong 99.4 5.1E-13 1.1E-17 108.3 7.6 116 16-136 7-143 (697)
301 PF04548 AIG1: AIG1 family; I 99.4 2.1E-12 4.5E-17 91.8 9.3 162 20-183 1-188 (212)
302 PRK10463 hydrogenase nickel in 99.4 1.1E-12 2.3E-17 96.0 7.8 57 120-179 229-287 (290)
303 PTZ00258 GTP-binding protein; 99.4 9.2E-12 2E-16 95.0 12.8 82 17-98 19-126 (390)
304 KOG0461 Selenocysteine-specifi 99.4 8.7E-12 1.9E-16 91.9 11.7 159 18-181 6-193 (522)
305 smart00010 small_GTPase Small 99.4 2.9E-13 6.2E-18 88.0 3.6 114 20-170 1-115 (124)
306 PF00503 G-alpha: G-protein al 99.3 3.8E-12 8.3E-17 98.3 7.1 122 59-180 230-389 (389)
307 KOG1144 Translation initiation 99.3 6.5E-12 1.4E-16 100.2 8.2 157 20-181 476-687 (1064)
308 PF05783 DLIC: Dynein light in 99.3 3.3E-11 7.2E-16 94.1 11.1 178 3-181 6-264 (472)
309 KOG1486 GTP-binding protein DR 99.3 9.9E-11 2.1E-15 82.9 11.2 152 20-181 63-288 (364)
310 TIGR00157 ribosome small subun 99.3 1.7E-11 3.7E-16 88.8 7.0 95 75-178 24-120 (245)
311 PF00350 Dynamin_N: Dynamin fa 99.2 1.4E-10 3E-15 79.4 10.4 63 65-131 102-168 (168)
312 COG0378 HypB Ni2+-binding GTPa 99.2 7.1E-11 1.5E-15 80.7 8.4 102 64-180 97-200 (202)
313 COG0050 TufB GTPases - transla 99.2 2E-10 4.4E-15 83.0 10.0 157 17-181 10-201 (394)
314 TIGR02836 spore_IV_A stage IV 99.2 2.5E-09 5.3E-14 81.5 15.5 152 17-176 15-232 (492)
315 KOG0468 U5 snRNP-specific prot 99.2 2.9E-10 6.4E-15 90.1 10.6 111 19-134 128-262 (971)
316 KOG0465 Mitochondrial elongati 99.2 1.9E-11 4.1E-16 95.7 3.5 115 17-136 37-171 (721)
317 COG5258 GTPBP1 GTPase [General 99.1 1.9E-10 4.1E-15 86.0 7.6 159 16-179 114-337 (527)
318 TIGR00993 3a0901s04IAP86 chlor 99.1 1.9E-09 4.2E-14 86.3 13.0 119 17-135 116-250 (763)
319 KOG0705 GTPase-activating prot 99.1 9.1E-11 2E-15 91.0 5.3 158 18-181 29-189 (749)
320 smart00053 DYNc Dynamin, GTPas 99.1 2.9E-08 6.2E-13 71.5 17.5 69 64-136 125-207 (240)
321 KOG1487 GTP-binding protein DR 99.1 7.1E-10 1.5E-14 78.9 9.0 152 20-181 60-281 (358)
322 KOG1707 Predicted Ras related/ 99.1 5.2E-09 1.1E-13 82.0 13.9 151 17-180 423-582 (625)
323 COG0012 Predicted GTPase, prob 99.1 7.8E-09 1.7E-13 77.5 13.3 81 19-99 2-109 (372)
324 PF00735 Septin: Septin; Inte 99.1 1.6E-09 3.4E-14 79.9 9.4 112 19-136 4-157 (281)
325 KOG0085 G protein subunit Galp 99.0 4.2E-10 9.1E-15 78.9 5.3 133 50-182 185-350 (359)
326 KOG3886 GTP-binding protein [S 99.0 1.2E-09 2.6E-14 76.5 7.0 146 19-166 4-164 (295)
327 cd01900 YchF YchF subfamily. 99.0 1.9E-09 4.1E-14 79.0 8.4 77 22-98 1-103 (274)
328 PRK09601 GTP-binding protein Y 99.0 3.7E-09 8.1E-14 80.0 9.8 79 20-98 3-107 (364)
329 cd01855 YqeH YqeH. YqeH is an 99.0 3.1E-09 6.7E-14 74.3 8.6 98 77-181 24-125 (190)
330 KOG0466 Translation initiation 99.0 4.1E-10 9E-15 81.9 4.0 159 18-181 37-241 (466)
331 cd01859 MJ1464 MJ1464. This f 99.0 1.7E-09 3.6E-14 73.2 6.4 94 78-181 3-96 (156)
332 cd01858 NGP_1 NGP-1. Autoanti 99.0 5.4E-09 1.2E-13 70.9 8.3 54 17-73 100-156 (157)
333 KOG0463 GTP-binding protein GP 98.9 2.3E-09 5.1E-14 80.2 6.7 153 19-176 133-353 (641)
334 cd04178 Nucleostemin_like Nucl 98.9 9.4E-09 2E-13 70.6 8.0 55 17-74 115-172 (172)
335 KOG0467 Translation elongation 98.9 1.6E-09 3.4E-14 87.0 4.7 110 19-133 9-136 (887)
336 KOG0410 Predicted GTP binding 98.9 3.4E-08 7.4E-13 72.6 10.7 149 19-181 178-341 (410)
337 KOG0464 Elongation factor G [T 98.9 3.6E-10 7.8E-15 85.5 0.5 124 20-148 38-184 (753)
338 KOG0099 G protein subunit Galp 98.9 1E-08 2.2E-13 73.2 7.6 122 61-182 199-370 (379)
339 KOG0460 Mitochondrial translat 98.9 1.6E-08 3.4E-13 74.8 8.0 160 17-180 52-244 (449)
340 KOG1954 Endocytosis/signaling 98.9 7.1E-08 1.5E-12 72.2 11.5 123 18-147 57-234 (532)
341 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.2E-08 4.8E-13 67.9 8.3 91 83-180 4-94 (157)
342 KOG2486 Predicted GTPase [Gene 98.8 1.4E-08 3.1E-13 73.1 7.4 160 15-179 132-314 (320)
343 cd01855 YqeH YqeH. YqeH is an 98.8 1.5E-08 3.2E-13 70.9 7.2 67 4-74 113-190 (190)
344 PRK12289 GTPase RsgA; Reviewed 98.8 1.5E-08 3.2E-13 77.0 7.7 88 82-178 84-172 (352)
345 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 2.1E-08 4.5E-13 66.8 6.7 52 21-75 85-139 (141)
346 KOG0448 Mitofusin 1 GTPase, in 98.8 2.7E-07 5.9E-12 73.8 13.2 152 8-164 98-309 (749)
347 cd01856 YlqF YlqF. Proteins o 98.8 4.9E-08 1.1E-12 67.1 8.2 55 17-74 113-170 (171)
348 KOG1547 Septin CDC10 and relat 98.8 2.4E-07 5.2E-12 65.6 11.2 70 4-73 29-113 (336)
349 PRK00098 GTPase RsgA; Reviewed 98.8 3.1E-08 6.6E-13 74.0 7.3 86 84-177 77-163 (298)
350 cd01854 YjeQ_engC YjeQ/EngC. 98.8 4.4E-08 9.5E-13 72.8 8.1 88 82-178 73-161 (287)
351 TIGR03597 GTPase_YqeH ribosome 98.8 1.1E-08 2.5E-13 78.2 5.1 99 74-179 50-151 (360)
352 KOG3887 Predicted small GTPase 98.7 1.2E-07 2.7E-12 67.1 9.5 157 20-179 28-200 (347)
353 KOG1143 Predicted translation 98.7 4E-08 8.7E-13 73.6 7.3 153 19-176 167-383 (591)
354 COG5019 CDC3 Septin family pro 98.7 4.1E-07 8.9E-12 68.1 12.4 114 17-136 21-177 (373)
355 cd01849 YlqF_related_GTPase Yl 98.7 6.9E-08 1.5E-12 65.3 7.8 82 89-179 1-83 (155)
356 cd01859 MJ1464 MJ1464. This f 98.7 9.5E-08 2.1E-12 64.6 8.3 68 5-73 85-155 (156)
357 cd01856 YlqF YlqF. Proteins o 98.7 7.8E-08 1.7E-12 66.1 7.8 97 72-180 3-100 (171)
358 PRK12288 GTPase RsgA; Reviewed 98.7 8.2E-08 1.8E-12 72.9 8.3 89 85-179 118-206 (347)
359 TIGR03596 GTPase_YlqF ribosome 98.7 8.6E-08 1.9E-12 70.9 8.1 98 72-181 5-103 (276)
360 KOG2655 Septin family protein 98.7 1E-07 2.3E-12 71.6 8.5 113 18-136 20-173 (366)
361 PRK09563 rbgA GTPase YlqF; Rev 98.7 1.5E-07 3.3E-12 70.0 8.9 56 17-75 119-177 (287)
362 TIGR03596 GTPase_YlqF ribosome 98.7 1.5E-07 3.3E-12 69.6 8.6 54 18-74 117-173 (276)
363 TIGR00092 GTP-binding protein 98.6 3.9E-07 8.4E-12 69.3 9.9 80 20-99 3-109 (368)
364 cd01849 YlqF_related_GTPase Yl 98.6 2.5E-07 5.3E-12 62.6 8.1 54 17-73 98-154 (155)
365 KOG0459 Polypeptide release fa 98.6 3.9E-08 8.5E-13 74.2 3.8 158 16-174 76-279 (501)
366 PF03193 DUF258: Protein of un 98.6 9.9E-08 2.1E-12 64.3 5.0 23 20-42 36-58 (161)
367 PRK09563 rbgA GTPase YlqF; Rev 98.6 2.8E-07 6.1E-12 68.5 7.7 99 71-181 7-106 (287)
368 COG5192 BMS1 GTP-binding prote 98.6 5.6E-07 1.2E-11 71.0 9.4 139 17-164 67-209 (1077)
369 COG1161 Predicted GTPases [Gen 98.6 2.7E-07 5.9E-12 69.5 7.2 56 17-75 130-188 (322)
370 cd01851 GBP Guanylate-binding 98.5 2.4E-06 5.3E-11 61.2 11.3 82 19-100 7-104 (224)
371 PRK12288 GTPase RsgA; Reviewed 98.5 3.7E-07 7.9E-12 69.4 7.4 54 21-77 207-270 (347)
372 PRK10416 signal recognition pa 98.5 7.9E-07 1.7E-11 66.9 9.0 139 18-173 113-302 (318)
373 COG1126 GlnQ ABC-type polar am 98.5 9.4E-08 2E-12 66.7 3.5 29 13-41 22-50 (240)
374 PRK14974 cell division protein 98.5 8E-07 1.7E-11 67.2 8.8 94 63-173 222-322 (336)
375 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 5.2E-07 1.1E-11 60.0 6.7 80 81-168 5-84 (141)
376 KOG1491 Predicted GTP-binding 98.5 1E-06 2.2E-11 65.4 8.4 82 18-99 19-126 (391)
377 cd03114 ArgK-like The function 98.5 5.1E-07 1.1E-11 60.5 6.2 58 63-132 91-148 (148)
378 PRK13796 GTPase YqeH; Provisio 98.5 6E-07 1.3E-11 68.9 7.4 67 4-75 147-221 (365)
379 TIGR03597 GTPase_YqeH ribosome 98.5 5.6E-07 1.2E-11 69.0 6.7 68 4-76 141-216 (360)
380 cd03112 CobW_like The function 98.5 1.2E-06 2.7E-11 59.4 7.7 21 22-42 3-23 (158)
381 PRK12289 GTPase RsgA; Reviewed 98.4 7.5E-07 1.6E-11 67.8 7.1 53 21-76 174-236 (352)
382 PRK13796 GTPase YqeH; Provisio 98.4 1E-06 2.3E-11 67.6 7.4 99 75-180 57-158 (365)
383 COG1618 Predicted nucleotide k 98.4 1.8E-05 4E-10 52.9 12.0 24 17-40 3-26 (179)
384 TIGR03348 VI_IcmF type VI secr 98.4 4.4E-06 9.5E-11 73.0 11.2 113 22-136 114-258 (1169)
385 COG0523 Putative GTPases (G3E 98.4 1.1E-05 2.5E-10 60.6 11.7 91 64-163 85-184 (323)
386 TIGR00157 ribosome small subun 98.4 1.3E-06 2.8E-11 63.5 6.3 53 20-76 121-183 (245)
387 TIGR00064 ftsY signal recognit 98.3 2.6E-06 5.7E-11 62.8 7.3 95 62-173 153-260 (272)
388 TIGR01425 SRP54_euk signal rec 98.3 1.7E-06 3.6E-11 67.2 6.0 110 19-135 100-253 (429)
389 PF00448 SRP54: SRP54-type pro 98.3 6.4E-07 1.4E-11 62.8 3.3 21 20-40 2-22 (196)
390 COG1162 Predicted GTPases [Gen 98.3 3.2E-06 7E-11 62.2 7.0 53 21-76 166-228 (301)
391 PRK01889 GTPase RsgA; Reviewed 98.2 1E-05 2.2E-10 61.9 9.3 84 85-177 110-193 (356)
392 cd01854 YjeQ_engC YjeQ/EngC. 98.2 5.1E-06 1.1E-10 61.8 7.1 24 20-43 162-185 (287)
393 KOG0447 Dynamin-like GTP bindi 98.2 9.8E-05 2.1E-09 58.5 14.0 80 65-147 413-507 (980)
394 PRK14722 flhF flagellar biosyn 98.2 5.4E-06 1.2E-10 63.4 6.9 25 17-41 135-159 (374)
395 cd03115 SRP The signal recogni 98.2 5.6E-06 1.2E-10 56.9 6.3 67 63-136 82-154 (173)
396 PF02492 cobW: CobW/HypB/UreG, 98.2 2E-06 4.3E-11 59.5 3.9 69 63-137 84-157 (178)
397 PRK00098 GTPase RsgA; Reviewed 98.2 8.1E-06 1.8E-10 61.1 7.2 24 19-42 164-187 (298)
398 KOG1534 Putative transcription 98.2 7.4E-06 1.6E-10 57.1 6.2 112 65-180 99-250 (273)
399 COG1136 SalX ABC-type antimicr 98.1 1.2E-05 2.5E-10 57.2 7.1 29 13-41 25-53 (226)
400 PRK11537 putative GTP-binding 98.1 2.7E-05 5.9E-10 58.7 9.1 67 64-136 91-165 (318)
401 PRK11889 flhF flagellar biosyn 98.1 1.8E-05 3.9E-10 60.8 7.7 22 19-40 241-262 (436)
402 PRK13695 putative NTPase; Prov 98.1 0.00019 4.1E-09 49.4 11.7 21 20-40 1-21 (174)
403 KOG3859 Septins (P-loop GTPase 98.0 1.4E-05 2.9E-10 58.1 5.8 70 4-73 25-104 (406)
404 COG1419 FlhF Flagellar GTP-bin 98.0 7.1E-05 1.5E-09 57.4 9.8 112 18-136 202-353 (407)
405 PF09547 Spore_IV_A: Stage IV 98.0 0.00015 3.3E-09 55.9 11.4 24 17-40 15-38 (492)
406 PRK12727 flagellar biosynthesi 98.0 6.6E-05 1.4E-09 59.8 9.6 24 17-40 348-371 (559)
407 KOG1424 Predicted GTP-binding 98.0 1.1E-05 2.4E-10 63.0 4.8 52 19-73 314-368 (562)
408 KOG0469 Elongation factor 2 [T 98.0 2.9E-05 6.4E-10 60.8 6.9 119 10-133 8-162 (842)
409 COG0552 FtsY Signal recognitio 98.0 2.3E-05 4.9E-10 58.5 5.9 23 18-40 138-160 (340)
410 PRK10867 signal recognition pa 97.9 2.1E-05 4.6E-10 61.5 5.6 22 19-40 100-121 (433)
411 PRK12724 flagellar biosynthesi 97.9 8.5E-05 1.8E-09 57.7 8.7 22 19-40 223-244 (432)
412 PRK14721 flhF flagellar biosyn 97.9 5.8E-05 1.3E-09 58.8 7.7 25 17-41 189-213 (420)
413 TIGR02475 CobW cobalamin biosy 97.9 0.00015 3.2E-09 55.3 9.7 20 22-41 7-26 (341)
414 PRK00771 signal recognition pa 97.9 4.2E-05 9.2E-10 59.9 6.9 23 18-40 94-116 (437)
415 KOG2484 GTPase [General functi 97.9 1.4E-05 2.9E-10 60.7 3.9 68 6-74 239-307 (435)
416 COG1124 DppF ABC-type dipeptid 97.9 3.3E-05 7.2E-10 55.1 5.6 31 13-43 27-57 (252)
417 PRK12723 flagellar biosynthesi 97.9 0.00039 8.4E-09 53.8 11.5 22 19-40 174-195 (388)
418 COG1131 CcmA ABC-type multidru 97.9 5.6E-05 1.2E-09 56.5 6.7 30 13-42 25-54 (293)
419 COG3640 CooC CO dehydrogenase 97.9 8.9E-05 1.9E-09 52.7 7.2 63 65-134 135-198 (255)
420 TIGR00959 ffh signal recogniti 97.8 3.8E-05 8.2E-10 60.1 5.7 22 19-40 99-120 (428)
421 PRK12726 flagellar biosynthesi 97.8 5.2E-05 1.1E-09 58.1 6.1 24 17-40 204-227 (407)
422 PF13555 AAA_29: P-loop contai 97.8 2.2E-05 4.8E-10 44.1 3.0 20 21-40 25-44 (62)
423 cd01129 PulE-GspE PulE/GspE Th 97.8 0.00016 3.4E-09 53.3 8.2 41 2-42 63-103 (264)
424 PF13207 AAA_17: AAA domain; P 97.8 2E-05 4.4E-10 50.8 3.2 21 21-41 1-21 (121)
425 COG3523 IcmF Type VI protein s 97.8 5.9E-05 1.3E-09 65.1 6.7 113 22-136 128-271 (1188)
426 COG1116 TauB ABC-type nitrate/ 97.8 2.5E-05 5.4E-10 56.0 3.8 29 13-41 23-51 (248)
427 COG1162 Predicted GTPases [Gen 97.8 0.00013 2.8E-09 54.0 7.4 89 85-179 77-165 (301)
428 COG1120 FepC ABC-type cobalami 97.8 1.9E-05 4.1E-10 57.3 3.1 29 13-41 22-50 (258)
429 KOG2485 Conserved ATP/GTP bind 97.8 8.6E-05 1.9E-09 54.8 6.4 57 17-74 141-206 (335)
430 cd03238 ABC_UvrA The excision 97.8 2E-05 4.3E-10 54.4 3.0 28 13-40 15-42 (176)
431 PRK06995 flhF flagellar biosyn 97.8 0.00019 4.1E-09 56.9 8.7 24 18-41 255-278 (484)
432 PRK08118 topology modulation p 97.8 2.6E-05 5.6E-10 53.4 3.2 21 21-41 3-23 (167)
433 COG3840 ThiQ ABC-type thiamine 97.8 3.5E-05 7.5E-10 52.8 3.6 26 16-41 22-47 (231)
434 COG4619 ABC-type uncharacteriz 97.7 4E-05 8.6E-10 51.9 3.7 28 13-40 23-50 (223)
435 KOG0781 Signal recognition par 97.7 0.0003 6.5E-09 54.9 8.9 153 17-176 376-585 (587)
436 PRK07261 topology modulation p 97.7 2.9E-05 6.2E-10 53.4 3.2 21 21-41 2-22 (171)
437 PRK05703 flhF flagellar biosyn 97.7 0.0005 1.1E-08 54.0 10.3 22 19-40 221-242 (424)
438 PF00005 ABC_tran: ABC transpo 97.7 2.1E-05 4.5E-10 51.9 2.3 28 14-41 6-33 (137)
439 COG0563 Adk Adenylate kinase a 97.7 3.3E-05 7.1E-10 53.3 3.1 23 20-42 1-23 (178)
440 PRK01889 GTPase RsgA; Reviewed 97.7 0.00011 2.5E-09 56.3 6.2 33 5-42 186-218 (356)
441 cd00009 AAA The AAA+ (ATPases 97.7 0.0013 2.7E-08 43.2 10.6 25 18-42 18-42 (151)
442 cd03264 ABC_drug_resistance_li 97.7 3.2E-05 6.9E-10 54.9 2.8 28 13-41 20-47 (211)
443 PRK04195 replication factor C 97.7 0.00081 1.8E-08 53.8 10.8 37 5-41 24-61 (482)
444 PRK06696 uridine kinase; Valid 97.7 0.00012 2.5E-09 52.6 5.4 38 4-41 7-44 (223)
445 cd00820 PEPCK_HprK Phosphoenol 97.6 5E-05 1.1E-09 47.7 3.0 27 14-40 10-36 (107)
446 COG1134 TagH ABC-type polysacc 97.6 5.5E-05 1.2E-09 54.0 3.5 28 14-41 48-75 (249)
447 COG3842 PotA ABC-type spermidi 97.6 4E-05 8.6E-10 58.1 2.9 29 13-41 25-53 (352)
448 KOG0057 Mitochondrial Fe/S clu 97.6 4.2E-05 9.2E-10 60.4 3.1 28 13-40 372-399 (591)
449 COG0541 Ffh Signal recognition 97.6 0.00018 3.8E-09 55.6 6.3 24 17-40 98-121 (451)
450 cd03110 Fer4_NifH_child This p 97.6 0.0029 6.3E-08 43.6 12.0 67 62-135 91-157 (179)
451 PRK09270 nucleoside triphospha 97.6 0.00012 2.5E-09 52.8 5.0 25 17-41 31-55 (229)
452 COG3638 ABC-type phosphate/pho 97.6 5.1E-05 1.1E-09 54.0 3.1 28 14-41 25-52 (258)
453 PRK14723 flhF flagellar biosyn 97.6 0.00049 1.1E-08 57.3 9.1 23 19-41 185-207 (767)
454 COG1117 PstB ABC-type phosphat 97.6 5.5E-05 1.2E-09 53.1 3.1 27 14-40 28-54 (253)
455 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.6 5E-05 1.1E-09 54.2 3.0 30 13-42 24-53 (218)
456 PF06858 NOG1: Nucleolar GTP-b 97.6 0.0002 4.4E-09 39.3 4.7 48 83-132 9-58 (58)
457 COG0411 LivG ABC-type branched 97.6 1.2E-05 2.6E-10 57.3 -0.3 27 14-40 25-51 (250)
458 cd03259 ABC_Carb_Solutes_like 97.6 5.6E-05 1.2E-09 53.8 3.1 30 13-42 20-49 (213)
459 PRK06731 flhF flagellar biosyn 97.6 0.00092 2E-08 49.3 9.5 112 18-136 74-226 (270)
460 KOG2423 Nucleolar GTPase [Gene 97.6 7.6E-05 1.6E-09 56.9 3.9 60 13-75 301-363 (572)
461 TIGR02673 FtsE cell division A 97.6 5.5E-05 1.2E-09 53.8 3.1 30 13-42 22-51 (214)
462 cd02019 NK Nucleoside/nucleoti 97.6 7.3E-05 1.6E-09 43.3 3.0 20 22-41 2-21 (69)
463 PRK05480 uridine/cytidine kina 97.6 7.8E-05 1.7E-09 52.9 3.8 26 16-41 3-28 (209)
464 TIGR00960 3a0501s02 Type II (G 97.6 5.6E-05 1.2E-09 53.9 3.0 30 13-42 23-52 (216)
465 TIGR00235 udk uridine kinase. 97.6 7.7E-05 1.7E-09 52.9 3.7 26 16-41 3-28 (207)
466 PF13671 AAA_33: AAA domain; P 97.6 6E-05 1.3E-09 49.9 3.0 19 22-40 2-20 (143)
467 cd03261 ABC_Org_Solvent_Resist 97.6 7.8E-05 1.7E-09 53.8 3.7 30 13-42 20-49 (235)
468 cd03225 ABC_cobalt_CbiO_domain 97.6 8.4E-05 1.8E-09 52.7 3.8 30 13-42 21-50 (211)
469 COG3839 MalK ABC-type sugar tr 97.6 7.8E-05 1.7E-09 56.3 3.7 30 14-43 24-53 (338)
470 cd03226 ABC_cobalt_CbiO_domain 97.6 8.3E-05 1.8E-09 52.6 3.7 29 14-42 21-49 (205)
471 TIGR01166 cbiO cobalt transpor 97.6 8.8E-05 1.9E-09 51.8 3.7 30 13-42 12-41 (190)
472 KOG0780 Signal recognition par 97.6 0.00016 3.4E-09 55.1 5.1 42 61-102 181-228 (483)
473 cd03262 ABC_HisP_GlnQ_permease 97.6 6.7E-05 1.4E-09 53.3 3.1 30 13-42 20-49 (213)
474 PF13521 AAA_28: AAA domain; P 97.6 4.8E-05 1E-09 51.8 2.2 22 21-42 1-22 (163)
475 cd03269 ABC_putative_ATPase Th 97.6 7E-05 1.5E-09 53.2 3.1 29 14-42 21-49 (210)
476 cd03224 ABC_TM1139_LivF_branch 97.6 9.7E-05 2.1E-09 52.8 3.8 29 14-42 21-49 (222)
477 cd03222 ABC_RNaseL_inhibitor T 97.6 0.0001 2.2E-09 50.9 3.8 28 15-42 21-48 (177)
478 COG1121 ZnuC ABC-type Mn/Zn tr 97.6 6.8E-05 1.5E-09 54.3 3.0 28 14-41 25-52 (254)
479 PRK13541 cytochrome c biogenes 97.6 9.7E-05 2.1E-09 51.8 3.7 30 13-42 20-49 (195)
480 cd03292 ABC_FtsE_transporter F 97.5 6.8E-05 1.5E-09 53.3 3.0 29 14-42 22-50 (214)
481 PRK15177 Vi polysaccharide exp 97.5 9.6E-05 2.1E-09 52.6 3.7 30 13-42 7-36 (213)
482 cd03265 ABC_DrrA DrrA is the A 97.5 7.4E-05 1.6E-09 53.4 3.1 30 13-42 20-49 (220)
483 TIGR03608 L_ocin_972_ABC putat 97.5 9.5E-05 2.1E-09 52.3 3.7 30 13-42 18-47 (206)
484 PF03266 NTPase_1: NTPase; In 97.5 8E-05 1.7E-09 51.0 3.1 20 21-40 1-20 (168)
485 PRK13540 cytochrome c biogenes 97.5 0.0001 2.2E-09 51.9 3.8 30 13-42 21-50 (200)
486 cd03293 ABC_NrtD_SsuB_transpor 97.5 9.4E-05 2E-09 52.9 3.6 30 13-42 24-53 (220)
487 cd01130 VirB11-like_ATPase Typ 97.5 9.4E-05 2E-09 51.5 3.5 28 14-41 20-47 (186)
488 TIGR02315 ABC_phnC phosphonate 97.5 7.4E-05 1.6E-09 54.2 3.1 30 13-42 22-51 (243)
489 cd03229 ABC_Class3 This class 97.5 7.9E-05 1.7E-09 51.5 3.1 28 14-41 21-48 (178)
490 TIGR01189 ccmA heme ABC export 97.5 0.00011 2.4E-09 51.7 3.9 30 13-42 20-49 (198)
491 COG4598 HisP ABC-type histidin 97.5 0.00018 3.8E-09 49.4 4.5 29 13-41 26-54 (256)
492 TIGR02211 LolD_lipo_ex lipopro 97.5 0.00011 2.3E-09 52.6 3.8 30 13-42 25-54 (221)
493 COG0410 LivF ABC-type branched 97.5 0.00011 2.4E-09 52.1 3.7 29 13-41 23-51 (237)
494 TIGR01978 sufC FeS assembly AT 97.5 8.1E-05 1.8E-09 54.0 3.2 30 13-42 20-49 (243)
495 cd03219 ABC_Mj1267_LivG_branch 97.5 7.6E-05 1.6E-09 53.9 3.0 29 13-41 20-48 (236)
496 cd03216 ABC_Carb_Monos_I This 97.5 0.00012 2.5E-09 49.9 3.7 29 14-42 21-49 (163)
497 cd03260 ABC_PstB_phosphate_tra 97.5 8E-05 1.7E-09 53.5 3.0 30 13-42 20-49 (227)
498 cd03235 ABC_Metallic_Cations A 97.5 0.00011 2.3E-09 52.3 3.6 30 13-42 19-48 (213)
499 cd03263 ABC_subfamily_A The AB 97.5 0.00011 2.4E-09 52.4 3.8 30 13-42 22-51 (220)
500 PRK11248 tauB taurine transpor 97.5 0.00011 2.4E-09 53.8 3.8 30 13-42 21-50 (255)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=6.4e-35 Score=202.40 Aligned_cols=171 Identities=32% Similarity=0.643 Sum_probs=146.1
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
++++.++.++|+++|++|||||||++++..+.+. .+.||.+.....++...+.+.+||+||++.+...+..+++.+|++
T Consensus 10 ~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~i 88 (181)
T PLN00223 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
T ss_pred HHhcCCCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 4445567799999999999999999999987775 467888877777777889999999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+|+++++++.....++..+.......++|+++|+||+|+......+++.+.+++.....+.+.+++|||++|.||++
T Consensus 89 I~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHH
Confidence 99999999999998888877776554446799999999999988777788888887765544556677999999999999
Q ss_pred HHHHHHHHhhhc
Q 029978 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
++++|.+.+.++
T Consensus 169 ~~~~l~~~~~~~ 180 (181)
T PLN00223 169 GLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHhhc
Confidence 999999887754
No 2
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=5.8e-35 Score=202.84 Aligned_cols=178 Identities=33% Similarity=0.622 Sum_probs=147.5
Q ss_pred Cc-hHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchH
Q 029978 1 MG-LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
|| ++..+. .+++.++.++|+++|++|||||||++++..+.+.. +.||.+.....++..++.+.+|||||++.+..
T Consensus 1 ~~~~~~~~~---~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 76 (182)
T PTZ00133 1 MGLWLSSAF---KSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRP 76 (182)
T ss_pred CchHHHHHH---HHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEECCEEEEEEECCCCHhHHH
Confidence 66 344443 44566778999999999999999999998877764 56788877777777889999999999999999
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEE
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCY 159 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+..+++.+|++|+|+|+++++++.....++..+.......+.|+++|+||.|+.+....+++.+.++........+.++
T Consensus 77 ~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~ 156 (182)
T PTZ00133 77 LWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQ 156 (182)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEE
Confidence 99999999999999999999998988888777776543335789999999999977666677777777765555566788
Q ss_pred EeeeCCCCCHHHHHHHHHHHhhh
Q 029978 160 MISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
++||++|.|+++++++|.+.+.+
T Consensus 157 ~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 157 GCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987653
No 3
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-36 Score=204.54 Aligned_cols=157 Identities=25% Similarity=0.466 Sum_probs=136.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+.-+||.++|++|||||+|+.+|..+.+...+..|++.++.. ++...+++++|||+||++|+....++++++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 456999999999999999999999999999999999977754 5567799999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-----HhHHHHHcCCCCcCCCcee-EEEeeeCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-----KEDLMEQMGLKSITDREVC-CYMISCKNS 166 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 166 (184)
+|||+++.+||..+..|+.++.++.. .++|.++||||+|+.+... +++....++ .+ ++++||+++
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~--------~~~f~ETSAK~~ 157 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELG--------IPIFLETSAKDS 157 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHHHHHhcC--------CcceeecccCCc
Confidence 99999999999999999999876644 7799999999999976532 222222222 23 999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.||++.|..+...+++
T Consensus 158 ~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 158 TNVEDAFLTLAKELKQ 173 (205)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-36 Score=200.28 Aligned_cols=163 Identities=22% Similarity=0.378 Sum_probs=144.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.+|++++|+.+|||||||.++..+.|...+.+|++.++.. +....+++++|||+|||+|+.+.++|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 34999999999999999999999999999999999977653 45667999999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|||+++..+|....+|+.+........++-+++||||.||.+. +++....+....+..++.|+++||+.|.||.++|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 9999999999999999999998877667899999999999765 5555555555555666789999999999999999
Q ss_pred HHHHHHhhhc
Q 029978 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~~~~~ 183 (184)
..|..++..+
T Consensus 178 rrIaa~l~~~ 187 (221)
T KOG0094|consen 178 RRIAAALPGM 187 (221)
T ss_pred HHHHHhccCc
Confidence 9999887653
No 5
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-36 Score=199.62 Aligned_cols=160 Identities=23% Similarity=0.406 Sum_probs=134.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--E--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+|++++|+.++|||||+.|+..+.|.+...+|++..+.. + +...+++.||||+|+++|..+.++|+|+++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 457899999999999999999999999999999999965544 3 334589999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|||+++.+||..++.|..++.+... +++-+.+||||+|+.+.. ..++...- .......|+++||+++.||+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~y-----Ae~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAY-----AESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHH-----HHhcCCEEEEEecccccCHH
Confidence 99999999999999999999987766 888999999999998732 22222111 11234469999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|..|.+.+..
T Consensus 157 ~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 157 EIFQAIAEKLPC 168 (200)
T ss_pred HHHHHHHHhccC
Confidence 999999988764
No 6
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=6.5e-34 Score=196.52 Aligned_cols=165 Identities=33% Similarity=0.637 Sum_probs=141.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..+.++|+++|++|||||||++++..+.+. .+.||++..........+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 10 ~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 10 GNKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 356799999999999999999999877774 4667888777666677899999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|+++++++.....++..+.......++|+++|+||+|+.+....+++.+.++......+.+.++++||++|.|+++++++
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 168 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTW 168 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHH
Confidence 99999999998888888876544467999999999999876666778777776655556677889999999999999999
Q ss_pred HHHHhh
Q 029978 176 LVKHSK 181 (184)
Q Consensus 176 i~~~~~ 181 (184)
|.+.+.
T Consensus 169 l~~~~~ 174 (175)
T smart00177 169 LSNNLK 174 (175)
T ss_pred HHHHhc
Confidence 987754
No 7
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=4.5e-34 Score=196.06 Aligned_cols=162 Identities=33% Similarity=0.637 Sum_probs=137.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..+.++|+++|++|||||||++++..+.+.. +.||.+.....+...++.+.+|||||++++...+..+++.+|++++|+
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 3567999999999999999999998777653 567877776666677899999999999999989999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|++++.++.....++.++.......++|+++|+||+|+......+++.+.+++........+++++||++|.|++++|++
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~ 164 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 164 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHH
Confidence 99999999998888888876544467899999999999766666777777766555555567999999999999999999
Q ss_pred HHH
Q 029978 176 LVK 178 (184)
Q Consensus 176 i~~ 178 (184)
|.+
T Consensus 165 l~~ 167 (168)
T cd04149 165 LSS 167 (168)
T ss_pred Hhc
Confidence 864
No 8
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=185.45 Aligned_cols=183 Identities=75% Similarity=1.187 Sum_probs=175.6
Q ss_pred CchHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHh
Q 029978 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
++.+++.+.|+++.+-..++.+.++|-.++|||||++....+.+.....||+++....++.+++.+.+||.+|++.++..
T Consensus 2 ~~~~~k~L~wi~~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsm 81 (186)
T KOG0075|consen 2 CAKLRKKLVWICNSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 81 (186)
T ss_pred hhHHHHHHHHHHHHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEE
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|..|.++++++++|+|+.+++.....+..+..++......++|+.+.|||.|+.+.....++.+++++.....+-+.+|.
T Consensus 82 WerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~s 161 (186)
T KOG0075|consen 82 WERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFS 161 (186)
T ss_pred HHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEE
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999899999
Q ss_pred eeeCCCCCHHHHHHHHHHHhhhc
Q 029978 161 ISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
+||++..|++.+.+++.++.+..
T Consensus 162 iScke~~Nid~~~~Wli~hsk~~ 184 (186)
T KOG0075|consen 162 ISCKEKVNIDITLDWLIEHSKSL 184 (186)
T ss_pred EEEcCCccHHHHHHHHHHHhhhh
Confidence 99999999999999999987643
No 9
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=1.6e-33 Score=191.79 Aligned_cols=158 Identities=31% Similarity=0.648 Sum_probs=133.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+||+++|.+|||||||++++..+.+. .+.||.+.....+....+.+.+||+||++++...+..+++.+|++++|+|+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~ 79 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC
Confidence 48999999999999999999888776 46788887766666778999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 100 YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
++++.....++..+.........|+++|+||+|+.+....+++.+.++........+.++++||++|.|++++|++|.+
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 80 RERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 9999998888887765544456899999999999765555666666665544455667889999999999999999864
No 10
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.9e-35 Score=190.10 Aligned_cols=162 Identities=25% Similarity=0.370 Sum_probs=143.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||.++|++|+|||||+.+|..+.|.+....|++.++. .++...+++.+|||+||++|+.+..+|++++.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 3599999999999999999999999999998888986664 467778999999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|||++.+++|..+.-|..++-.+...+++-.++|+||+|...+ +.+.++.++...+.+.+-+++|||++..||+..|
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~---R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE---RVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc---ccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 9999999999999888888877766688999999999998654 5666666777777788889999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.++..+.+
T Consensus 167 eelveKIi~ 175 (209)
T KOG0080|consen 167 EELVEKIIE 175 (209)
T ss_pred HHHHHHHhc
Confidence 999877653
No 11
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=7.7e-35 Score=193.25 Aligned_cols=166 Identities=23% Similarity=0.386 Sum_probs=135.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..-+||.++|++|+|||||++++....|...+..|++.++.. ++..-+.+++|||+|+++|.++...+++++|+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 445999999999999999999999999999999999976654 5556689999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCC---CCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSL---NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++||++++++|..+..|..+++.+... ...|.+++|||+|+........-.++....-.....+|+|++|||+..||
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV 166 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence 999999999999999999988876442 46799999999999764221111111111111233668999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
++.|+.+.+.+..
T Consensus 167 ~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 167 DEAFEEIARRALA 179 (210)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 12
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=6.1e-34 Score=196.14 Aligned_cols=159 Identities=17% Similarity=0.277 Sum_probs=128.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.++|+++|.+|||||||++++.++.++..+.+|.+..+. .++...+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 479999999999999999999999998888888875443 23444578999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|++++++|..+..|+..+.+.....++|+++|+||+|+.+... .++..+. .....+++++|||++|.||+++|
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~-----a~~~~~~~~e~Sa~~~~~v~~~f 156 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNL-----AREFNCPFFETSAALRHYIDDAF 156 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHH-----HHHhCCEEEEEecCCCCCHHHHH
Confidence 9999999999987766665443346799999999999865422 2222111 11234579999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+++.+.+.+
T Consensus 157 ~~l~~~~~~ 165 (172)
T cd04141 157 HGLVREIRR 165 (172)
T ss_pred HHHHHHHHH
Confidence 999987654
No 13
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=6.6e-34 Score=199.82 Aligned_cols=157 Identities=22% Similarity=0.353 Sum_probs=125.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+.|+++|+.|||||||++++..+.|...+.+|++..+. .+. ...+.+++|||+|++++..++..+++.+|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999999888888875543 233 33488999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|++++++|..+..|+..+... ...+.|+++|+||+|+..... .++.. .+... ...+.+++|||++|.||+++|
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~-~~a~~---~~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGE-KFAQQ---ITGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHH-HHHHh---cCCCEEEEecCCCCCCHHHHH
Confidence 999999999998887765433 346799999999999965322 12211 11100 113469999999999999999
Q ss_pred HHHHHHhh
Q 029978 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
+++.+.+.
T Consensus 156 ~~l~~~~~ 163 (202)
T cd04120 156 LKLVDDIL 163 (202)
T ss_pred HHHHHHHH
Confidence 99998764
No 14
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.2e-33 Score=196.82 Aligned_cols=158 Identities=18% Similarity=0.311 Sum_probs=128.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..+||+++|+.|||||||+.++..+.+...+.+|.+..+. .++...+.+++|||+|++++..++..+++.+|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35689999999999999999999998888777777765442 23344588999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|||++++++|..+..|+.++.... ++.|+++|+||+|+.... ..++..+.. ....+++++|||++|.||+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a-----~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYA-----ERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence 9999999999999999888886543 589999999999996532 222222222 1223479999999999999
Q ss_pred HHHHHHHHHhh
Q 029978 171 TVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
++|+++.+.+.
T Consensus 157 ~~F~~l~~~i~ 167 (189)
T cd04121 157 ESFTELARIVL 167 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999998664
No 15
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=3.4e-32 Score=187.81 Aligned_cols=161 Identities=30% Similarity=0.580 Sum_probs=136.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|++|+|||||++++..+.+.. ..+|.+............+.+||+||++.+...+..+++.+|++++|+|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID 91 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence 457899999999999999999999887764 5678777776777778999999999999999899999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++.+++.....++..+.+.....++|+++++||+|+......+++.+.++........+++++|||++|.|+++++++|
T Consensus 92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 99998888888878777665444679999999999997765667777777755544556789999999999999999998
Q ss_pred HH
Q 029978 177 VK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 172 ~~ 173 (174)
T cd04153 172 AS 173 (174)
T ss_pred hc
Confidence 64
No 16
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=2.6e-32 Score=187.62 Aligned_cols=161 Identities=30% Similarity=0.569 Sum_probs=134.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
||+++|++|||||||++++.++.+.. +.+|.+.....++..++.+.+|||||++.+...+..+++.+|++++|+|++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~ 79 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHR 79 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcH
Confidence 58999999999999999999887654 77888877777777889999999999999988999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc-CCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 101 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
+++.....++..+.......+.|+++|+||+|+.+....+++.+.+..... ....+.+++|||++|.||+++|+++.+.
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 80 DRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred HHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 999999888888876544466899999999999766565666655543322 1234578899999999999999999987
Q ss_pred hhh
Q 029978 180 SKS 182 (184)
Q Consensus 180 ~~~ 182 (184)
+.+
T Consensus 160 ~~~ 162 (169)
T cd04158 160 LVA 162 (169)
T ss_pred Hhh
Confidence 654
No 17
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=6.2e-32 Score=188.05 Aligned_cols=175 Identities=32% Similarity=0.557 Sum_probs=143.2
Q ss_pred chHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhH
Q 029978 2 GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 81 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 81 (184)
.||.++..++. ..++.++|+++|++|+|||||++++.++.+. .+.+|.+.....+...++.+.+||+||++.+...+
T Consensus 2 ~~~~~~~~~~~--~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 78 (184)
T smart00178 2 DWFYDILASLG--LWNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLW 78 (184)
T ss_pred hHHHHHHHHhc--cccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEECCEEEEEEECCCCHHHHHHH
Confidence 36777765321 1267799999999999999999999977654 34566666666666778999999999999999999
Q ss_pred HHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcC-------CC
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT-------DR 154 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~ 154 (184)
..++..+|++++|+|+++++++.....++..+.+.....++|+++|+||+|+......+++.+.+++.... ..
T Consensus 79 ~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~ 158 (184)
T smart00178 79 KDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVR 158 (184)
T ss_pred HHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCc
Confidence 99999999999999999988888888788777765445689999999999998777778888888765422 24
Q ss_pred ceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 155 EVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
...+++|||+++.|+++++++|.+.
T Consensus 159 ~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 159 PLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eeEEEEeecccCCChHHHHHHHHhh
Confidence 5679999999999999999999764
No 18
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-33 Score=192.27 Aligned_cols=163 Identities=21% Similarity=0.387 Sum_probs=136.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
....++|+++|++|||||+++.+|..+.|...+..|++.++.. .+...+.+++|||+||++++.+..+|+++|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 3567999999999999999999999999999999999966643 456678999999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|||+++..+|.++..|+..+-.+ ...++|.++||||+|+... +++..+.+........+.++|+||++|.||++
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEK---RQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeecccccccc---ccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 9999999999999999976666544 4469999999999999763 22322223333333455799999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
.|-.+.+.+.+
T Consensus 165 aF~~La~~i~~ 175 (207)
T KOG0078|consen 165 AFLSLARDILQ 175 (207)
T ss_pred HHHHHHHHHHh
Confidence 99999888763
No 19
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=3.7e-32 Score=187.48 Aligned_cols=161 Identities=33% Similarity=0.615 Sum_probs=133.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
...++|+++|++|||||||++++.+..+ ..+.+|.++....+....+.+.+|||||++.+...+..+++.+|++++|+|
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVD 90 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 4568999999999999999999987644 456778776666666678899999999999988888999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++..++.....++..+.......++|+++|+||+|+.+....+++.+.++........++++++||++|.|++++++++
T Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 91 SSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 99998888888888777665445689999999999997765666666666554334456789999999999999999998
Q ss_pred HH
Q 029978 177 VK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 171 ~~ 172 (173)
T cd04154 171 VD 172 (173)
T ss_pred hc
Confidence 64
No 20
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.9e-33 Score=194.83 Aligned_cols=163 Identities=18% Similarity=0.269 Sum_probs=126.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+..+||+++|++|+|||||++++..+.+...+.||++..+. .++...+.+.+|||+|++.+...+..+++.+|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 45789999999999999999999999999999999875443 234455889999999999999999999999999999
Q ss_pred EEeCCCCCChHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---------HhHHHHHcCCCCcCCCc-eeEEEee
Q 029978 94 VVDAADYDNLPVS-RSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---------KEDLMEQMGLKSITDRE-VCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~S 162 (184)
|||++++++|..+ ..|...+.... ++.|+++|+||+|+.+... ...+..+.+........ +++++||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999997 56666665432 5799999999999864210 00011111111112223 3799999
Q ss_pred eCCCCC-HHHHHHHHHHHhh
Q 029978 163 CKNSTN-IDTVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~-v~~l~~~i~~~~~ 181 (184)
|++|.| |+++|+.+.+++.
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 161 ALQSENSVRDIFHVATLACV 180 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 999998 9999999998654
No 21
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.4e-32 Score=192.34 Aligned_cols=163 Identities=20% Similarity=0.272 Sum_probs=126.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.+||+++|++|||||||+.++..+.++..+.||++..+. .++...+.+.+|||+|++++..++..+++.+|++++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 3589999999999999999999999999999999875443 2444558899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC---------cCCC-ceeEEEeee
Q 029978 95 VDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS---------ITDR-EVCCYMISC 163 (184)
Q Consensus 95 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~Sa 163 (184)
||++++++|..+.. |...+... ..++|+++|+||.|+.+.....+......... .... .+++++|||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999975 54545433 25799999999999965422111111111110 1112 257999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 029978 164 KNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~~ 182 (184)
++|.||+++|+.+.+.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987653
No 22
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2.7e-33 Score=193.01 Aligned_cols=156 Identities=20% Similarity=0.294 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||+.++..+.|...+.+|++..+. .++...+.+.+|||+|++++...+..+++.++++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999999999999875443 233455889999999999999999999999999999999
Q ss_pred CCCCCChHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCccCcC------------CHhHHHHHcCCCCcCCCce-eEEEee
Q 029978 97 AADYDNLPVS-RSELHDLLSKPSLNGIPLLVLGNKIDKPEAL------------SKEDLMEQMGLKSITDREV-CCYMIS 162 (184)
Q Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~S 162 (184)
++++++|..+ ..|+..+.... .+.|+++||||+|+.+.. ..++..+ + ...... ++++||
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~----a~~~~~~~~~E~S 154 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE-L----RKQIGAAAYIECS 154 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHH-H----HHHcCCCEEEECC
Confidence 9999999998 56777765432 479999999999996531 1111111 1 111223 599999
Q ss_pred eCCCCCHHHHHHHHHHHhhh
Q 029978 163 CKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~ 182 (184)
|++|.||+++|+.+.+.+.+
T Consensus 155 Ak~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 155 SKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred CCcccCHHHHHHHHHHHHhc
Confidence 99999999999999987654
No 23
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=6.7e-32 Score=184.14 Aligned_cols=158 Identities=32% Similarity=0.673 Sum_probs=130.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC-CCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+|+++|++|||||||++++.+.. +...+.||.+.....+....+.+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 48999999999999999999875 35667888887766677788999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHH
Q 029978 100 YDNLPVSRSELHDLLSKP--SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
..++.....++..+.+.. ...++|+++|+||+|+.+....+++.+.++.........+++++||++|.|+++++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 888887777777665532 235799999999999977655566666655543333455799999999999999999986
Q ss_pred H
Q 029978 178 K 178 (184)
Q Consensus 178 ~ 178 (184)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 4
No 24
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-33 Score=187.11 Aligned_cols=161 Identities=19% Similarity=0.284 Sum_probs=140.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee----eEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+|+.++|+.|||||+|+.+++...|.+....|++.++ .+++...+++++|||+|++.++....++++.+.+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 3568999999999999999999999999999999998655 357788899999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|||++++++|..+..|+.++.+.. ..++.+++++||+|+... +++.++.+..+...+...++++||+++.||++.
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 9999999999999999999997764 489999999999999776 455555555555566667999999999999999
Q ss_pred HHHHHHHhh
Q 029978 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
|..+...+.
T Consensus 160 F~nta~~Iy 168 (216)
T KOG0098|consen 160 FINTAKEIY 168 (216)
T ss_pred HHHHHHHHH
Confidence 987766543
No 25
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=7.6e-33 Score=188.99 Aligned_cols=157 Identities=21% Similarity=0.336 Sum_probs=125.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|||||||++++..+.+...+.+|....+. .++...+.+.+|||||++++...+..+++.+|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 379999999999999999999999888888787763322 23334477899999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++.....|+..+.......++|+++|+||+|+.+... .++. ..+.. ....+++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEG-QALAR----QWGCPFYETSAKSKINVDEVF 155 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHH-HHHHH----HcCCeEEEecCCCCCCHHHHH
Confidence 9999999999988888877655556899999999999865321 1221 11111 112579999999999999999
Q ss_pred HHHHHHh
Q 029978 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+++.+.+
T Consensus 156 ~~l~~~~ 162 (163)
T cd04136 156 ADLVRQI 162 (163)
T ss_pred HHHHHhc
Confidence 9998764
No 26
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=8e-32 Score=184.26 Aligned_cols=155 Identities=32% Similarity=0.617 Sum_probs=132.6
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC
Q 029978 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 101 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 101 (184)
|+++|++|||||||++++.++.+...+.||.+.....++..++.+.+||++|++.+...+..+++.+|++++|+|++++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 78999999999999999999888888889998877777888899999999999999999999999999999999999988
Q ss_pred ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc-CCCceeEEEeeeCC------CCCHHHHHH
Q 029978 102 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKN------STNIDTVID 174 (184)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~v~~l~~ 174 (184)
++...+.++..+.... .++|+++|+||+|+......+++.+.++.... ....+++++|||++ +.||+++|+
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 8888888888776443 68999999999999877666666655544333 34467889898888 999999999
Q ss_pred HHHH
Q 029978 175 WLVK 178 (184)
Q Consensus 175 ~i~~ 178 (184)
.++.
T Consensus 160 ~~~~ 163 (164)
T cd04162 160 QLIN 163 (164)
T ss_pred HHhc
Confidence 8864
No 27
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1e-32 Score=192.78 Aligned_cols=161 Identities=19% Similarity=0.285 Sum_probs=130.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...+||+++|++|+|||||++++.++.+...+.+|.+..+. .++...+.+++|||||++++..++..+++.++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 45799999999999999999999999888888888875553 244555789999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||+++.++|..+..|+..+.......+.|+++|+||+|+.+.. ...+..+... ....+++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK-----SFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HhCCEEEEeeCCCCCCHHH
Confidence 99999999999998888877765555689999999999986532 2222222111 1124699999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+++.+.+.+
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999877653
No 28
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-33 Score=179.55 Aligned_cols=159 Identities=23% Similarity=0.380 Sum_probs=139.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.-+||+++|..|+|||+|++++..+-|++....|++.++.. ++..++++++|||+|+++|+....++++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 45899999999999999999999999999999999976643 45677999999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
++|++...+|.-+.+|+.++.++.. .++--|+|+||+|+.+. +++.++++..........++++||+...||+.||
T Consensus 86 vydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 9999999999999999999876644 56777999999999776 6666777766666667779999999999999999
Q ss_pred HHHHHHh
Q 029978 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
..+...+
T Consensus 162 ~~~a~rl 168 (213)
T KOG0095|consen 162 LDLACRL 168 (213)
T ss_pred HHHHHHH
Confidence 8887554
No 29
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.3e-32 Score=188.57 Aligned_cols=157 Identities=20% Similarity=0.306 Sum_probs=127.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+...+.+|.+.... ..+...+.+.+|||||++.+...+..+++.++++++||
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 79999999999999999999999998888888775543 23344578999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|++++++|..+..|+..+... ...+.|+++|+||+|+.... ..++..+... ...++++++||++|.|++++|
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFAD-----ENGLLFLECSAKTGENVEDAF 156 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 999999999998888776543 23678999999999996542 2233322221 123479999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.+.+.+.+
T Consensus 157 ~~l~~~~~~ 165 (166)
T cd04122 157 LETAKKIYQ 165 (166)
T ss_pred HHHHHHHhh
Confidence 999877654
No 30
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=1.4e-31 Score=182.07 Aligned_cols=157 Identities=39% Similarity=0.725 Sum_probs=128.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
||+++|++++|||||++++..+.+. ...+|.+.....++..+..+.+|||||++.+...+..+++.++++++|+|++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 79 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDR 79 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 5899999999999999999877665 346777766666777789999999999999999999999999999999999988
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 101 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
.++.....++..+.+.....++|+++|+||+|+.+.....++.+.++.........+++++||+++.|++++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 80 DRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 777766666666655444467999999999999765555666666654444444568999999999999999999875
No 31
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.1e-32 Score=188.45 Aligned_cols=158 Identities=20% Similarity=0.317 Sum_probs=126.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
++||+++|.+|||||||++++..+.+...+.+|.+.... ......+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 468999999999999999999988888888888774432 23334578899999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++..++..+..|+..+.......+.|+++|+||+|+.+... .++. +.+.. ...++++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNLAR----QWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHHHH----HhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999988888887655557899999999999965422 1221 11111 112479999999999999999
Q ss_pred HHHHHHhh
Q 029978 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
+++.+.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99987664
No 32
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.4e-32 Score=189.54 Aligned_cols=160 Identities=21% Similarity=0.366 Sum_probs=128.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--Ee------------eCCEEEEEEeCCCcccchHhHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VT------------KGNVTIKLWDLGGQPRFRSMWER 83 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~------------~~~~~~~~~D~~g~~~~~~~~~~ 83 (184)
..+||+++|++|||||||++++.++.+...+.+|++.+... +. ...+.+.+|||||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999999998888888755432 21 23478999999999999999999
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEe
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++.+|++++|||+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++..+... ...++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD-----KYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH-----HcCCeEEEE
Confidence 999999999999999999999999988887665444678999999999996532 2222211111 112469999
Q ss_pred eeCCCCCHHHHHHHHHHHhhh
Q 029978 162 SCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
||++|.|++++++.+.+.+.+
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999986643
No 33
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.3e-31 Score=188.90 Aligned_cols=159 Identities=28% Similarity=0.386 Sum_probs=127.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--Ee-eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VT-KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+||+++|++|||||||++++.++.+...+.+|.+.++. . ++ ...+.+.+|||||++.+...+..+++.++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999999998888899875543 2 23 4468899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcC---CCCCCCcEEEEeeCCCccC--cCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 95 VDAADYDNLPVSRSELHDLLSK---PSLNGIPLLVLGNKIDKPE--ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~---~~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
||++++++|..+..|+..+... ....++|+++|+||+|+.+ ....++..+..... ...+++++||++|.||
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCH
Confidence 9999999999998887766432 2236789999999999963 22333333222211 1246999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++|+++.+.+.+
T Consensus 157 ~e~f~~l~~~l~~ 169 (201)
T cd04107 157 EEAMRFLVKNILA 169 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
No 34
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=3.4e-32 Score=193.21 Aligned_cols=160 Identities=24% Similarity=0.432 Sum_probs=126.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+||+++|.+|+|||||++++..+.+.. ..+|++..+.......+.+.+|||+|++.+...+..+++.+|++|+|||+++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~ 79 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN 79 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCC
Confidence 589999999999999999999998875 5778877666555667889999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc---------------------CCHhHH---HHHcCC------C
Q 029978 100 YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA---------------------LSKEDL---MEQMGL------K 149 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~---------------------~~~~~~---~~~~~~------~ 149 (184)
+++|..+..|+..+... ...++|+++|+||+|+.+. ...++. .+..+. .
T Consensus 80 ~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~ 158 (220)
T cd04126 80 VQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDED 158 (220)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccccc
Confidence 99999999888887654 3367999999999998651 011221 112110 0
Q ss_pred CcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 150 SITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
.......+|++|||++|.||+++|+.+++.+.
T Consensus 159 ~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 159 LSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 00111357999999999999999999998765
No 35
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.4e-32 Score=190.09 Aligned_cols=161 Identities=19% Similarity=0.254 Sum_probs=123.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|||||||++++.++.++..+.||.+..+. .++...+.+.+|||+|++.+......+++.+|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 368999999999999999999999999999898865443 23445588999999999999988899999999999999
Q ss_pred eCCCCCChHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-H--------hHHHHHcCCCCcCCCc-eeEEEeeeC
Q 029978 96 DAADYDNLPVS-RSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-K--------EDLMEQMGLKSITDRE-VCCYMISCK 164 (184)
Q Consensus 96 d~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~--------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 164 (184)
|++++++|..+ ..|...+.... ++.|+++|+||+|+.+... . ..+..+.+........ .++++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 56766665442 5799999999999854200 0 0010011111111223 369999999
Q ss_pred CCCC-HHHHHHHHHHHhh
Q 029978 165 NSTN-IDTVIDWLVKHSK 181 (184)
Q Consensus 165 ~~~~-v~~l~~~i~~~~~ 181 (184)
+|.| |+++|+.+.+...
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998643
No 36
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.4e-31 Score=184.75 Aligned_cols=159 Identities=18% Similarity=0.231 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||++++..+.++..+.||.+..+. .+ ....+.+.+|||+|++++...+..+++.+|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 68999999999999999999999998889999875443 22 3334889999999999998888889999999999999
Q ss_pred CCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC---------CCCcCC-CceeEEEeeeCC
Q 029978 97 AADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG---------LKSITD-REVCCYMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~Sa~~ 165 (184)
++++++|..+.. |...+... . .++|+++|+||+|+.+.....+...... ...... ..+.+++|||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~-~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH-C-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999875 55555433 2 5799999999999865422111111100 000111 235799999999
Q ss_pred CCCHHHHHHHHHHHh
Q 029978 166 STNIDTVIDWLVKHS 180 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~ 180 (184)
|.|++++|+.+++.+
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998753
No 37
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=186.87 Aligned_cols=162 Identities=20% Similarity=0.340 Sum_probs=135.2
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
.+..+||+++|++++|||-|+.++..++|..+...|++....+ ++.+.++.+||||+||++|+.....+++++.++
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA 90 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 90 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence 3567999999999999999999999999999999999976654 567779999999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|||++...+|..+..|+.+++.+.. .++++++||||+|+.... .+..+-+..........++++||+++.||+.
T Consensus 91 llVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lr---aV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~ 166 (222)
T KOG0087|consen 91 LLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLR---AVPTEDGKAFAEKEGLFFLETSALDATNVEK 166 (222)
T ss_pred EEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhcc---ccchhhhHhHHHhcCceEEEecccccccHHH
Confidence 999999999999999999999987654 799999999999997631 1111111111111233599999999999999
Q ss_pred HHHHHHHHhh
Q 029978 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
.|+.++..+.
T Consensus 167 aF~~~l~~I~ 176 (222)
T KOG0087|consen 167 AFERVLTEIY 176 (222)
T ss_pred HHHHHHHHHH
Confidence 9998887664
No 38
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=4.4e-31 Score=181.10 Aligned_cols=157 Identities=33% Similarity=0.575 Sum_probs=135.1
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
+|+++|++|||||||++++.+. +...+.+|.+.....+...++.+++||+||++.+...+..+++.+|++++|+|+++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~ 79 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDD 79 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCch
Confidence 4799999999999999999865 777788898877777778889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcC---CCceeEEEeeeCCC------CCHHH
Q 029978 101 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT---DREVCCYMISCKNS------TNIDT 171 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~~v~~ 171 (184)
+++.....++..+.......++|+++|+||+|+.......++.+.+.+.... ...+++++|||++| .|+++
T Consensus 80 ~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 80 DRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred hHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHH
Confidence 9999998888888766555689999999999998877777777776655432 23467888999998 89999
Q ss_pred HHHHHHH
Q 029978 172 VIDWLVK 178 (184)
Q Consensus 172 l~~~i~~ 178 (184)
.|+||.+
T Consensus 160 ~~~wl~~ 166 (167)
T cd04161 160 GLRWLLA 166 (167)
T ss_pred HHHHHhc
Confidence 9999975
No 39
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=2.8e-31 Score=183.19 Aligned_cols=172 Identities=35% Similarity=0.734 Sum_probs=151.3
Q ss_pred HHHHHhhcc-CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhcc
Q 029978 8 LNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR 86 (184)
Q Consensus 8 ~~~~~~~~~-~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (184)
++.++++.. ++..+|+++|+.||||||+++++..+... ...||.++....+...++.+.+||.+|+..++..|..++.
T Consensus 2 ~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 2 SSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred HHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 344556555 78899999999999999999999876443 4788999999888899999999999999999999999999
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcC-CCceeEEEeeeCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT-DREVCCYMISCKN 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 165 (184)
.++++|+|+|+++.+.+.+....+..++......++|+++++||.|+.+....+++.+.+.+.... .+.+.++.|||++
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 999999999999998899999888888887666789999999999999888888888888776655 5678899999999
Q ss_pred CCCHHHHHHHHHHHh
Q 029978 166 STNIDTVIDWLVKHS 180 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~ 180 (184)
|.|+++.+++|.+.+
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999998764
No 40
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=5.9e-31 Score=183.00 Aligned_cols=164 Identities=28% Similarity=0.558 Sum_probs=129.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE-----eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV-----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+.++|+++|++|||||||++++..+.+... .+|.+...... +...+.+.+|||||++.+...+..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998777644 56665444332 225689999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcC-CCceeEEEeeeCCCCCHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT-DREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|+++.+++.....++..+.......++|+++|+||+|+......++....++..... ...++++++||++|.|+++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 999999988888877777777665444679999999999997655555555555433322 2235789999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
++++|.+.+.+
T Consensus 161 l~~~l~~~l~~ 171 (183)
T cd04152 161 GLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999987753
No 41
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=4.1e-32 Score=185.18 Aligned_cols=155 Identities=21% Similarity=0.372 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
++|+++|++|+|||||++++.++.+...+.+|.+.... .+. ...+.+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888886543 233 33478999999999999988899999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH-hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|++++++|..+..|+..+.... ..+.|+++|+||.|+...... .+....+. ....+++++|||++|.||+++|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLA----KEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999988887776442 357999999999998654321 11122211 11224699999999999999999
Q ss_pred HHHHH
Q 029978 175 WLVKH 179 (184)
Q Consensus 175 ~i~~~ 179 (184)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99875
No 42
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.9e-31 Score=182.79 Aligned_cols=156 Identities=22% Similarity=0.425 Sum_probs=126.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE----eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||+++++.+.+...+.+|.+...... +...+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999998888888888887655442 234578999999999998888888999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|+++.+++..+..|...+..... ++|+++|+||+|+.......+..+.. ....++++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQITFH-----RKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHHHHH-----HHcCCEEEEEeCCCCCChHHHHHH
Confidence 99999999999888887765432 89999999999997443222222211 123457999999999999999999
Q ss_pred HHHHhhh
Q 029978 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~~~~ 182 (184)
+.+.+.+
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9987754
No 43
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.6e-31 Score=182.10 Aligned_cols=157 Identities=16% Similarity=0.266 Sum_probs=125.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|||||||++++.++.+...+.+|.+.... .++...+.+.+|||+|++++...+..+++.++++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 368999999999999999999998888888887764432 23333467889999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++..++..+..|+..+.+.....+.|+++|+||+|+.+... ..+..+... ....+++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK-----SYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH-----HhCCeEEEecCCCCCCHHHHHH
Confidence 9999999998888888777655556899999999999975322 222222211 1234699999999999999999
Q ss_pred HHHHHh
Q 029978 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~~ 180 (184)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998764
No 44
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.2e-32 Score=193.74 Aligned_cols=163 Identities=20% Similarity=0.286 Sum_probs=125.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
..+||+++|++|||||||+.++..+.|...+.||++..+. .++...+.+.+|||+|++.+......+++.+|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 4589999999999999999999999999999999875543 2344568899999999999999999999999999999
Q ss_pred EeCCCCCChHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---------HhHHHHHcCCCCcCCCce-eEEEeee
Q 029978 95 VDAADYDNLPVS-RSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---------KEDLMEQMGLKSITDREV-CCYMISC 163 (184)
Q Consensus 95 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa 163 (184)
||++++++|..+ ..|+..+.... .+.|+++|+||+|+..... ...+..+.+........+ ++++|||
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 999999999985 56766665432 4789999999999864210 000111111111122233 5899999
Q ss_pred CCCC-CHHHHHHHHHHHhhh
Q 029978 164 KNST-NIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~-~v~~l~~~i~~~~~~ 182 (184)
++|. ||+++|+.++..+.+
T Consensus 170 ktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHH
Confidence 9997 899999999887643
No 45
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=2e-30 Score=181.40 Aligned_cols=162 Identities=35% Similarity=0.632 Sum_probs=135.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+..+|+++|++|||||||++++.++.+. .+.+|.+.....+......+.+||+||++.+...+..+++.++++++|+|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 45799999999999999999999977664 56677776666666777899999999999988888899999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc-----------CCCceeEEEeeeCC
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-----------TDREVCCYMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~ 165 (184)
+++.+++.....++..+.+.....+.|+++|+||+|+......+++.+.++.... ....+++++|||++
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK 175 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence 9998888888888888876655567999999999999776666777776654322 12346799999999
Q ss_pred CCCHHHHHHHHHHH
Q 029978 166 STNIDTVIDWLVKH 179 (184)
Q Consensus 166 ~~~v~~l~~~i~~~ 179 (184)
|.|++++|+++.+.
T Consensus 176 ~~gv~e~~~~l~~~ 189 (190)
T cd00879 176 RQGYGEAFRWLSQY 189 (190)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999875
No 46
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=5.6e-32 Score=184.88 Aligned_cols=157 Identities=21% Similarity=0.291 Sum_probs=125.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|+|||||++++.++.+...+.+|....+.. ++...+.+.+|||||++++...+..+++.+|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5799999999999999999999888877777776643332 3333478999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++..++..+..|+..+.+.....+.|+++|+||+|+..... .++..+... ...++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-----KLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-----HcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999988888877655556899999999999865421 122212111 122468999999999999999
Q ss_pred HHHHHHh
Q 029978 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+.+.+.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998765
No 47
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=7e-32 Score=185.12 Aligned_cols=159 Identities=24% Similarity=0.396 Sum_probs=128.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|++|+|||||++++.++.+...+.+|.+.... .+ +...+.+.+|||||++++...+..+++.+|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 3589999999999999999999999999888888875443 22 3334789999999999998888899999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||++++++|..+..|+..+... ...+.|+++|+||+|+.+.. ..++..+... ....+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALAD-----EYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 99999999999998887777654 33679999999999997532 2222222211 1234699999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+++.+.+..
T Consensus 156 ~~~~i~~~~~~ 166 (167)
T cd01867 156 AFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 48
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.98 E-value=5.7e-32 Score=184.90 Aligned_cols=158 Identities=22% Similarity=0.320 Sum_probs=125.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|||||||++++.++.+...+.+|....+. ..+...+.+.+|||||++++...+..+++.++++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 48999999999999999999998888777777663322 233345789999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++..+.... ...+++++||++|.|++++++
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ-----WGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH-----cCCEEEEeecCCCCCHHHHHH
Confidence 99999999998888777665555689999999999996532 22222221111 124799999999999999999
Q ss_pred HHHHHhhh
Q 029978 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
++.+.+..
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99987653
No 49
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.98 E-value=9.2e-32 Score=186.69 Aligned_cols=160 Identities=25% Similarity=0.423 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+...+.+|.+..+. . .+...+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999889999986553 2 3334588999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+++++++..+..|+..+..... ...| ++|+||+|+..... .+...++ .........+++++|||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~-~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITKQ-ARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHHH-HHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999888887765432 4567 68899999963211 1111111 11111122357999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+.+
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 50
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.98 E-value=3e-32 Score=190.62 Aligned_cols=157 Identities=18% Similarity=0.264 Sum_probs=124.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+|+++|.+|||||||++++..+.+...+.+|.+..+. .++...+.+.+|||||++++...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 5899999999999999999999888888888764432 2334446799999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 98 ADYDNLPVSRSELHDLLSKPS--LNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
++.++|..+..|+..+..... ..+.|+++|+||+|+..... ..+..+ .. ....++++++||++|.|+++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAA-LA----RRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHH-HH----HHhCCEEEEecCCCCCCHHHHH
Confidence 999999999888877754322 36789999999999964322 122111 11 1123469999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+++.+.+.+
T Consensus 156 ~~l~~~l~~ 164 (190)
T cd04144 156 YTLVRALRQ 164 (190)
T ss_pred HHHHHHHHH
Confidence 999987764
No 51
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.98 E-value=1e-30 Score=177.22 Aligned_cols=157 Identities=76% Similarity=1.229 Sum_probs=135.8
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC
Q 029978 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 101 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 101 (184)
|+++|++|+|||||++++.+..+.....+|.+.....++.+...+.+||+||++.+...+..++..+|++++|+|+++.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 79999999999999999999999988899998887777777899999999999999999999999999999999999988
Q ss_pred ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 102 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
++.....++..+.......++|+++|+||+|+.+....+++.+..++.......++++++||++|.|++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88887777777766555568999999999999876555666666665544445678999999999999999999875
No 52
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.98 E-value=6.7e-32 Score=184.99 Aligned_cols=157 Identities=17% Similarity=0.338 Sum_probs=126.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+...+.+|.+..+. ..+...+.+++|||||++.+...+..+++.++++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888898876543 23345688999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCC----CCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSL----NGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~----~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
|+++++++..+..|...+...... .+.|+++|+||+|+.+.. ..++...... ....+++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-----SKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-----HcCCeEEEEECCCCCCH
Confidence 999999999988888877665432 579999999999996321 2222222111 11246999999999999
Q ss_pred HHHHHHHHHHhh
Q 029978 170 DTVIDWLVKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~~~ 181 (184)
+++++.+.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 53
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.98 E-value=4.8e-32 Score=185.15 Aligned_cols=158 Identities=16% Similarity=0.272 Sum_probs=124.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee---eEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+++|+++|.+|+|||||++++.++.+...+.+|..... ..++...+.+.+|||||++++...+..+++.+|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47899999999999999999999999888878765222 223344567899999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh-HHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++.+++..+..|+..+.......++|+++|+||+|+....... +....+.. ....+++++||+++.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE----EWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH----HhCCEEEEecCCCCCCHHHHHH
Confidence 999999999998888877765445789999999999986532211 11111111 1124689999999999999999
Q ss_pred HHHHHh
Q 029978 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~~ 180 (184)
++.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998764
No 54
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.98 E-value=1.1e-31 Score=184.64 Aligned_cols=158 Identities=22% Similarity=0.367 Sum_probs=126.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
||+++|++|||||||++++.++.+...+.+|.+..+.. +....+.+++|||||++++...+..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999999998765532 23335789999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH---hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+++++++.....|+..+.+.....+.|+++|+||+|+.+.... ++...... .....+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA----AEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH----HHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999888888765544346789999999998654221 11111111 1112468999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.+.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999988754
No 55
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.98 E-value=1.3e-30 Score=177.13 Aligned_cols=157 Identities=36% Similarity=0.722 Sum_probs=135.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
||+++|.+|||||||++++.++. .....+|.+............+.+||+||++.+...+..+++.+|++++|+|++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~ 79 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDR 79 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999876 44567777777777777789999999999999998999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 101 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
+++.....++..+.......+.|+++|+||+|+......+++.+.++........++++++||++|.|++++++.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 80 ERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 889988888888877655578999999999999877666777777766544455678999999999999999999875
No 56
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.98 E-value=4.1e-31 Score=182.31 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=120.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|||||||+.++..+.+...+.+|....+. .++...+.+.+|||+|++.+...+..+++.+|++++|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 68999999999999999999999998888888764322 233445789999999999999988999999999999999
Q ss_pred CCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCC--------CCcC-CCceeEEEeeeCC
Q 029978 97 AADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGL--------KSIT-DREVCCYMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~--------~~~~-~~~~~~~~~Sa~~ 165 (184)
++++++|..+.. |+..+... . .+.|+++|+||+|+.+... .+...+.... .... ....++++|||++
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~-~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999865 54444432 2 5799999999999964311 1111110000 0001 1124799999999
Q ss_pred CCCHHHHHHHHHHH
Q 029978 166 STNIDTVIDWLVKH 179 (184)
Q Consensus 166 ~~~v~~l~~~i~~~ 179 (184)
|.|++++|+.+.+.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999864
No 57
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.98 E-value=1.3e-31 Score=183.45 Aligned_cols=157 Identities=20% Similarity=0.369 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+...+.+|.+..+. . .+...+.+.+|||+|++++...+..+++.++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 68999999999999999999999988888888764332 2 2234478999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++.+++..+..|...+.... ..+.|+++|+||+|+.+... .++..+... ....+++++||++|.|+++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLAD-----QLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 9999999999988887775432 35789999999999965422 222221111 112369999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.+.+.+-.
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987653
No 58
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.98 E-value=5e-31 Score=187.96 Aligned_cols=157 Identities=21% Similarity=0.362 Sum_probs=129.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE----eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|||||||++++..+.+...+.+|++...... +...+.+.+|||+|++++...+..+++.++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 5569999999999999999999999999999999988665442 234589999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|||+++.+++..+..|+..+.... .++|+++|+||+|+..... .+++ +.. ....+++++|||++|.|+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~-----~~~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TFH-----RKKNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HHH-----HhcCCEEEEcCCCCCCCHHH
Confidence 9999999999999988888776542 5799999999999864322 2222 111 12345799999999999999
Q ss_pred HHHHHHHHhh
Q 029978 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
+|+++.+.+.
T Consensus 163 ~f~~l~~~~~ 172 (219)
T PLN03071 163 PFLYLARKLA 172 (219)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 59
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.98 E-value=1.3e-31 Score=190.32 Aligned_cols=161 Identities=18% Similarity=0.282 Sum_probs=124.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|||||||+.++.++.++..+.||++..+. .++...+.+.+|||+|++.+...+..+++.+|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 68999999999999999999999999999999875553 244456889999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH-hH--------HHHHcCCCCcCCCc-eeEEEeeeCCC
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-ED--------LMEQMGLKSITDRE-VCCYMISCKNS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~~ 166 (184)
++++++|..+..+|....... ..+.|+++|+||+|+...... ++ +..+.+........ .+|+||||+++
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~ 160 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS 160 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 999999999966555443332 267999999999999653110 00 00111111111223 47999999998
Q ss_pred CC-HHHHHHHHHHHhh
Q 029978 167 TN-IDTVIDWLVKHSK 181 (184)
Q Consensus 167 ~~-v~~l~~~i~~~~~ 181 (184)
.| |+++|+.+..++.
T Consensus 161 ~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 161 ERSVRDVFHVATVASL 176 (222)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 85 9999999988654
No 60
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.98 E-value=1.1e-31 Score=183.86 Aligned_cols=155 Identities=21% Similarity=0.305 Sum_probs=121.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
++|+++|++|||||||++++.++.+...+.+|.+..+.. .+...+.+.+|||||++++...+..+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 789999999999999999999999888877877644432 23345789999999999999888888999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKP--SLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+++.+++..+..|+..+.... ...++|+++|+||+|+.+... .++.. ... ....+++++|||++|.|++++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGA-ACA----TEWNCAFMETSAKTNHNVQEL 156 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHH-HHH----HHhCCcEEEeecCCCCCHHHH
Confidence 999999998888776554322 226799999999999965322 12211 111 112346999999999999999
Q ss_pred HHHHHHH
Q 029978 173 IDWLVKH 179 (184)
Q Consensus 173 ~~~i~~~ 179 (184)
|++|.+.
T Consensus 157 f~~l~~~ 163 (165)
T cd04140 157 FQELLNL 163 (165)
T ss_pred HHHHHhc
Confidence 9999864
No 61
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.9e-31 Score=189.14 Aligned_cols=159 Identities=23% Similarity=0.401 Sum_probs=127.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--Ee---eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+||+++|++|||||||++++.++.+.....+|++.+... +. ...+.+++|||+|++.+...+..+++.+|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 4899999999999999999999998888888888755432 22 235789999999999999989999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||++++++|..+..|+..+.........|+++|+||+|+.+... .++. ..+. .....+++++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLA----KDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHH----HHhCCEEEEEeCCCCCCHHH
Confidence 999999999999999888877654445688999999999965322 2222 2211 11225799999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+.|.+.+.+
T Consensus 157 ~f~~l~~~~~~ 167 (211)
T cd04111 157 AFELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 62
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=2.5e-31 Score=182.11 Aligned_cols=158 Identities=25% Similarity=0.415 Sum_probs=125.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|||||||++++.++.+...+.+|.+.... .+ ....+.+++||+||++++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 379999999999999999999998888777777764432 22 23347899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
||+++++++..+..|+..+.... ..+.|+++|+||+|+..... .++...... ...++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-----ELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCCcCHHHH
Confidence 99999999999998887775543 35789999999999865422 222222111 12347999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
++.+.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999987753
No 63
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=5.3e-31 Score=184.12 Aligned_cols=161 Identities=22% Similarity=0.284 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.||+++|++|||||||++++.++.++..+.+|.+..+.. .+...+.+.+|||+|++.+...+..+++.++++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 379999999999999999999999988888887655432 33344789999999999998888888999999999999
Q ss_pred CCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC---------CCCc-CCCceeEEEeeeCC
Q 029978 97 AADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG---------LKSI-TDREVCCYMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~Sa~~ 165 (184)
++++++|..+.. |+..+... ..+.|+++|+||+|+.......+...... .... ....+++++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999998864 55555543 25799999999999976532222111110 0011 11235799999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 029978 166 STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~~ 182 (184)
|.||+++|+++.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999987764
No 64
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=3.4e-31 Score=188.54 Aligned_cols=158 Identities=20% Similarity=0.307 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--Ee---eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+||+++|++|||||||+++|.++.+...+.+|.+.+... +. ...+.+.+|||+|++.+...+..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999999999999998865432 22 2358899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPS--LNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
||++++++|..+..|...+..... ..+.|+++|+||+|+.... ..++..+... ....+++++||++|.|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~-----~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQ-----ANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECCCCCCHH
Confidence 999999999999888777765432 2457899999999996432 1122111111 112468999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|+++.+.+..
T Consensus 156 ~lf~~l~~~l~~ 167 (215)
T cd04109 156 LLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHHh
Confidence 999999987753
No 65
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.97 E-value=2.9e-30 Score=176.95 Aligned_cols=158 Identities=38% Similarity=0.695 Sum_probs=127.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC------CCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGG------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+|+++|++|+|||||++++.+.. ....+.+|.+.....+...+..+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 58999999999999999997532 234556777777766777789999999999999998889999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC--cCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS--ITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++.+++.....++..+.+.....++|+++|+||+|+......++..+.+.... ......+++++||++|.|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888888888888877665557899999999999977655555555443322 2234568999999999999999
Q ss_pred HHHHHH
Q 029978 173 IDWLVK 178 (184)
Q Consensus 173 ~~~i~~ 178 (184)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999864
No 66
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.97 E-value=3e-30 Score=175.74 Aligned_cols=157 Identities=31% Similarity=0.601 Sum_probs=127.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEee-CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+|+++|++|||||||++++.++.+.. ..+|.++....+.. ..+.+.+||+||++.+...+..++..+|++++|+|+++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~ 79 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSD 79 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc
Confidence 58999999999999999999887754 45777665554443 45789999999999988888999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc-CCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 100 YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
+.++.....++..+.......+.|+++|+||+|+......+++...++.... ....+++++|||++|.|+++++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 80 EARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 8888888888887776544468999999999999765556666666554322 224567999999999999999999864
No 67
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=1.2e-30 Score=177.93 Aligned_cols=157 Identities=22% Similarity=0.368 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+.+...++.+.... .++...+.+++|||+|++.+...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888777776654432 23445578999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|++++.++..+..|+..+... ..++|+++|+||+|+.+.. .++..+ .. ....++++++||++|.|++++++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKFN-FA----EKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999998888887777543 2478999999999985321 111111 11 112347999999999999999999
Q ss_pred HHHHhhhcC
Q 029978 176 LVKHSKSKS 184 (184)
Q Consensus 176 i~~~~~~~~ 184 (184)
+.+.+.+++
T Consensus 153 l~~~~~~~~ 161 (161)
T cd04124 153 AIKLAVSYK 161 (161)
T ss_pred HHHHHHhcC
Confidence 999887654
No 68
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=4.4e-30 Score=175.83 Aligned_cols=158 Identities=23% Similarity=0.365 Sum_probs=124.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eEEeeCC--EEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|++|+|||||++++.++.+...+.+|.+... ..+...+ +.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999999988888777776433 2333333 689999999999998888999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||+++++++..+..|+..+.... ..++|+++|+||+|+..... .++..+... ......++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcEEEEEECCCCCCHHH
Confidence 999999999998888887776532 36799999999999965422 122222111 11123589999999999999
Q ss_pred HHHHHHHHh
Q 029978 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+++.+.+.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998753
No 69
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=4.5e-32 Score=174.05 Aligned_cols=159 Identities=23% Similarity=0.422 Sum_probs=131.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-++.+|+|++|+|||+|+.+|..+.|...+..|++.+.. .+++..++++||||+|+++|+.+...++++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 367789999999999999999999999999999997664 2456668999999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
||+++.+||.+..+|++++.++.. .+|-++||||.|.++....+. +-+........+.+|++||+.+.|++.+|.
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncd--sv~~vLVGNK~d~~~RrvV~t---~dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCD--SVPKVLVGNKNDDPERRVVDT---EDARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCc--cccceecccCCCCccceeeeh---HHHHHHHHhcCchheehhhhhcccchHHHH
Confidence 999999999999999999977643 899999999999977532111 111111222334599999999999999999
Q ss_pred HHHHHhhh
Q 029978 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
-|.+.+.+
T Consensus 163 cit~qvl~ 170 (198)
T KOG0079|consen 163 CITKQVLQ 170 (198)
T ss_pred HHHHHHHH
Confidence 88877653
No 70
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-31 Score=171.81 Aligned_cols=156 Identities=22% Similarity=0.435 Sum_probs=131.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--E--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+|+.|+|+..+|||||+.++.+.+|.+.+-.|.+.+... + ..+.+++++|||+|+|+++.+.-.++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 34799999999999999999999999999988888866543 1 2345899999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-----CHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-----SKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+||++|.++|..++.|.-.+... +-.+.|+|+|+||+|+.++. ....+.++++. .+|++||+.|.|
T Consensus 100 myDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf--------efFEtSaK~Nin 170 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF--------EFFETSAKENIN 170 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhCh--------HHhhhccccccc
Confidence 99999999999999887777544 44799999999999997752 22344455554 599999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029978 169 IDTVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~~~~ 182 (184)
|+++|+.++..+..
T Consensus 171 Vk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 171 VKQVFERLVDIICD 184 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
No 71
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=9.3e-31 Score=177.78 Aligned_cols=152 Identities=20% Similarity=0.334 Sum_probs=114.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+||+++|++|||||||+.++..+.+...+.|+.+..... ++...+.+.+|||+|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 489999999999999999999888877666654432222 333447899999999975 3456789999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--CC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 98 ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+++++|+.+..|+..+.......++|+++|+||.|+... .. ..+..+.+.. ....+++++|||++|.||+++|+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~---~~~~~~~~e~SAk~~~~i~~~f~ 152 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA---DMKRCSYYETCATYGLNVERVFQ 152 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH---HhCCCcEEEEecCCCCCHHHHHH
Confidence 999999999988888876654567999999999998431 11 1111111111 11235799999999999999999
Q ss_pred HHHHH
Q 029978 175 WLVKH 179 (184)
Q Consensus 175 ~i~~~ 179 (184)
.+.+.
T Consensus 153 ~~~~~ 157 (158)
T cd04103 153 EAAQK 157 (158)
T ss_pred HHHhh
Confidence 98864
No 72
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=9.9e-31 Score=184.14 Aligned_cols=158 Identities=24% Similarity=0.439 Sum_probs=127.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|||||||++++.++.+...+.+|.+..+. .+. ...+.+.+||+||++.+...+..+++.+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35689999999999999999999999888888888875543 232 33468999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|||++++++|..+..|+..+.... ...|+++|+||+|+.+... .++..+... ....+++++||++|.||+
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAG-----QMGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECCCCcCHH
Confidence 9999999999999988887765432 5789999999999975422 222222211 112469999999999999
Q ss_pred HHHHHHHHHhh
Q 029978 171 TVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
++|+++.+.+.
T Consensus 157 ~lf~~l~~~~~ 167 (199)
T cd04110 157 EMFNCITELVL 167 (199)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 73
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=9.7e-31 Score=179.61 Aligned_cols=158 Identities=20% Similarity=0.285 Sum_probs=126.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-+||+++|++|+|||||++++.++.+.....+|.+.... ..+.....+.+||+||++.+......+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 479999999999999999999998888877777664432 2333447899999999999998889999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+.... .+++|+++|+||+|+.... ..++...... ....+++++||+++.|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAK-----EHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHH
Confidence 99999999999988887776543 3679999999999997432 2233222221 12346999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+.+.+.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 74
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=7.9e-31 Score=183.56 Aligned_cols=158 Identities=26% Similarity=0.425 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC-CCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSE-DMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~-~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+||+++|++|||||||++++.++.+.. .+.+|.+.... .++...+.+.+|||||++++......+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888754 56667664442 2334457899999999999988888999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
||+++.+++..+..|+..+.... ..++|+++|+||+|+.... ..++... +.. ....+++++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~-l~~----~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGER-LAK----EYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHH-HHH----HcCCeEEEEeCCCCCCHHHH
Confidence 99999999999988877776543 2578999999999996432 2222222 111 11247999999999999999
Q ss_pred HHHHHHHhhhc
Q 029978 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
+++|.+.+.+.
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999887643
No 75
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=7.1e-31 Score=179.11 Aligned_cols=153 Identities=21% Similarity=0.406 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----Ee--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+||+++|++|+|||||++++.++.+...+.+|.+..+.. +. ...+.+.+|||||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999998888888888765532 22 345789999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|...+.... .++|+++|+||+|+..... .++..+.... ..++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAKR-----LQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHHH-----cCCeEEEEECCCCCCHHH
Confidence 999999999999888877765432 5799999999999865322 2222222111 123699999999999999
Q ss_pred HHHHHHHH
Q 029978 172 VIDWLVKH 179 (184)
Q Consensus 172 l~~~i~~~ 179 (184)
+++.+.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99998764
No 76
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=1.4e-30 Score=179.03 Aligned_cols=158 Identities=25% Similarity=0.400 Sum_probs=125.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..++|+++|++|||||||++++.++.+...+.+|.+.... .++...+.+.+||+||++++...+..+++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 4589999999999999999999999998888888775543 234455789999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCC---CCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPS---LNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
|||+++.+++..+..|...+..... ..++|+++|+||+|+.... ..++..+.... ....+++++||++|.|+
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v 159 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATNV 159 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCCH
Confidence 9999999999998888776654322 2578999999999986432 23333322211 11236899999999999
Q ss_pred HHHHHHHHHH
Q 029978 170 DTVIDWLVKH 179 (184)
Q Consensus 170 ~~l~~~i~~~ 179 (184)
+++|+.+++.
T Consensus 160 ~~~~~~~~~~ 169 (170)
T cd04116 160 AAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 77
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.97 E-value=1.8e-29 Score=174.05 Aligned_cols=162 Identities=32% Similarity=0.631 Sum_probs=135.2
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..+.++|+++|++|+|||||++++.+..+. ...+|.+.....+...+..+.+||+||+..+...+..+++.++++++|+
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 355899999999999999999999976553 4566777666666667789999999999988888888899999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|+++..++.....++..+.......++|+++++||+|+......+++.+.++........++++++||++|.|+++++++
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 169 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNW 169 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHH
Confidence 99988878777777777766544567999999999999877667788888777665556667899999999999999999
Q ss_pred HHH
Q 029978 176 LVK 178 (184)
Q Consensus 176 i~~ 178 (184)
|.+
T Consensus 170 l~~ 172 (173)
T cd04155 170 VCK 172 (173)
T ss_pred Hhc
Confidence 875
No 78
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=9.4e-31 Score=180.02 Aligned_cols=159 Identities=27% Similarity=0.468 Sum_probs=125.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--EeeCCEEEEEEeCCCcccch-HhHHHhccCCCEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFR-SMWERYCRAVSAIVY 93 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~ 93 (184)
.++|+++|++|+|||||++++..+.++..+.+|.+.... . .+...+.+.+|||+|++.+. ..+..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 479999999999999999999999988888888764433 2 33445789999999999886 467888899999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH-hHHHHHcCCCCcCCCceeEEEeeeCC---CCCH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKN---STNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v 169 (184)
|||+++++++..+..|...+.......++|+++|+||+|+...... .+....+.. ...++++++||++ +.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD----AHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH----HcCCcEEEEeccCCcCCCCH
Confidence 9999999999999888877766554568999999999998654321 122222221 1235699999999 8999
Q ss_pred HHHHHHHHHHhh
Q 029978 170 DTVIDWLVKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~~~ 181 (184)
+++|..+.+.++
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999987664
No 79
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=1.1e-30 Score=178.72 Aligned_cols=156 Identities=20% Similarity=0.342 Sum_probs=124.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.++|+++|++|||||||++++.++.+...+.+|.+.... .+. ...+.+.+||+||++.+...+..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999999888777787775443 233 2336799999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+.... ..+.|+++|+||+|+.... ..++...... ....+++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 99999999999988887776543 2468999999999986532 2222222221 12347999999999999999
Q ss_pred HHHHHHHh
Q 029978 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
++.+.+.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
No 80
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=1.3e-30 Score=185.58 Aligned_cols=161 Identities=19% Similarity=0.307 Sum_probs=128.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..+||+++|++|||||||++++.++.+...+.+|.+.... .+ +...+.+.+|||+|++++...+..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 35689999999999999999999999888788888775543 23 333478999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH-hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|||++++++|..+..|+..+... ...++|+++|+||+|+...... .+....+.. ...++++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~----~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAE----KEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCHHH
Confidence 999999999999988887776554 3367999999999998654221 222222221 1245799999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+.+.+.+.+
T Consensus 165 lf~~l~~~i~~ 175 (216)
T PLN03110 165 AFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999887754
No 81
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=9.6e-31 Score=178.36 Aligned_cols=154 Identities=21% Similarity=0.327 Sum_probs=123.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.++.+.....++.+.... .++...+.+++||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888877777764433 23334478999999999999988999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++.+++..+..|+..+... ..+++|+++|+||+|+.+.. ..++....... ..++++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQE-----NGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHHH
Confidence 999999999988887766433 34789999999999996532 22232222221 12579999999999999999
Q ss_pred HHHHHH
Q 029978 174 DWLVKH 179 (184)
Q Consensus 174 ~~i~~~ 179 (184)
+++.+.
T Consensus 155 ~~~~~~ 160 (161)
T cd04113 155 LKCARS 160 (161)
T ss_pred HHHHHh
Confidence 999875
No 82
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=7.9e-30 Score=184.27 Aligned_cols=158 Identities=18% Similarity=0.305 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee---eEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
++|+++|++|||||||++++.++.++..+.+|++... ..++...+.+.+|||+|++.+...+..++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 4899999999999999999999999888888886222 2233345789999999999988888888899999999999
Q ss_pred CCCCCChHHHHHHHHHHhcC--------CCCCCCcEEEEeeCCCccC--cCCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 97 AADYDNLPVSRSELHDLLSK--------PSLNGIPLLVLGNKIDKPE--ALSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+++.++|..+..|+..+... ....++|+++|+||+|+.. ....+++.+.++.. ..++++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----ENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----CCCEEEEEeCCCC
Confidence 99999999998887777543 1235799999999999964 23445554444321 2456999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 029978 167 TNIDTVIDWLVKHSK 181 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~ 181 (184)
.|++++|+.|.+...
T Consensus 157 ~gI~elf~~L~~~~~ 171 (247)
T cd04143 157 SNLDEMFRALFSLAK 171 (247)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999998653
No 83
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.5e-30 Score=181.70 Aligned_cols=157 Identities=21% Similarity=0.333 Sum_probs=124.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+...+.+|.+..+. .++...+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998878888774442 23334578999999999999989999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... .++... +.. ...++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~-~~~----~~~~~~~evSa~~~~~i~~~f 154 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKS-FCD----SLNIPFFETSAKQSINVEEAF 154 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHH-HHH----HcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999988877776543 24689999999999874322 222211 111 123369999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.+.+.+..
T Consensus 155 ~~l~~~~~~ 163 (188)
T cd04125 155 ILLVKLIIK 163 (188)
T ss_pred HHHHHHHHH
Confidence 999987654
No 84
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-30 Score=167.74 Aligned_cols=160 Identities=21% Similarity=0.316 Sum_probs=132.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+.-+|++++|+.|.|||+|+++|....|..+..+|++..+. .+-.+.+++++|||+||++|+...+++++++.+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 34589999999999999999999999999999999996654 24455689999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|||++++++|..+..|+.+.... ..+++-+++++||.|+.+. +++.-..+..+..+....++++||++|.||++.
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~---R~VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPE---REVTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChh---hhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 999999999999999988877654 4488999999999999766 333333333333444446899999999999999
Q ss_pred HHHHHHHh
Q 029978 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
|-...+.+
T Consensus 163 Fl~c~~tI 170 (214)
T KOG0086|consen 163 FLKCARTI 170 (214)
T ss_pred HHHHHHHH
Confidence 87666554
No 85
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=3.7e-30 Score=180.55 Aligned_cols=151 Identities=22% Similarity=0.403 Sum_probs=122.9
Q ss_pred EcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC
Q 029978 25 IGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 25 iG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
+|++|||||||++++..+.+...+.+|++..... ++...+.+.+|||+|++++..++..+++.++++++|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 6999999999999999999988889998765543 234568999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 101 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
++|..+..|...+.+.. .++|+++|+||+|+.......+.... .....+++++|||++|.||+++|+++.+.+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~~-----~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSITF-----HRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHHH-----HHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999988887776543 57999999999998643221111111 122345799999999999999999999876
Q ss_pred hh
Q 029978 181 KS 182 (184)
Q Consensus 181 ~~ 182 (184)
.+
T Consensus 154 ~~ 155 (200)
T smart00176 154 IG 155 (200)
T ss_pred Hh
Confidence 53
No 86
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=7.9e-30 Score=177.93 Aligned_cols=156 Identities=19% Similarity=0.288 Sum_probs=121.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE-Ee---eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~-~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.++.++..+.+|.+..+.. +. ...+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999999988888887655432 22 33578999999999999988899999999999999
Q ss_pred eCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcC------CHhHHHHHcCCCCcCCCce-eEEEeeeCCCC
Q 029978 96 DAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEAL------SKEDLMEQMGLKSITDREV-CCYMISCKNST 167 (184)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 167 (184)
|+++.++|..+.. |+..+... ..+.|+++|+||+|+.+.. ..++..+... .... +++++||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK-----KQGAFAYLECSAKTME 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH-----HcCCcEEEEccCCCCC
Confidence 9999999998875 44444332 2579999999999986532 1122111111 1112 68999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
|++++|+.+.+.+..
T Consensus 154 ~v~~~f~~l~~~~~~ 168 (187)
T cd04132 154 NVEEVFDTAIEEALK 168 (187)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987654
No 87
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=1.9e-30 Score=178.17 Aligned_cols=158 Identities=22% Similarity=0.319 Sum_probs=125.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.++|+++|++|+|||||++++.++.+...+.+|.+..+.. .+...+.+.+|||||++.+..++..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 3689999999999999999999999888888877644322 3334478999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++.....|...+.......+.|+++|+||+|+..... .++..+.. . .....+++++||+++.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~-~---~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLS-Q---QWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHH-H---HcCCceEEEeeCCCCCCHHHHH
Confidence 9999999999988877776544456899999999999865422 12221111 1 1112579999999999999999
Q ss_pred HHHHHHh
Q 029978 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+++.+.+
T Consensus 157 ~~i~~~~ 163 (168)
T cd04177 157 IDLVRQI 163 (168)
T ss_pred HHHHHHH
Confidence 9998754
No 88
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.4e-30 Score=170.16 Aligned_cols=170 Identities=33% Similarity=0.676 Sum_probs=159.6
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.++.+++.+|+++|-.++||||++.++..++.... .||+++....+..+++.+.+||..|+++++..|..|++..+++|
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 46788999999999999999999999998887666 99999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
||+|.++++.+.+.++.+..++......+.|+++.+||.|++...++.++.+.+++.....+.+.+-.|+|.+|.|+.+-
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHH
Confidence 99999999999999999998888777789999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHhhhc
Q 029978 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
++++.+.+..+
T Consensus 170 l~wl~~~~~~~ 180 (181)
T KOG0070|consen 170 LDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHhcc
Confidence 99999988765
No 89
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=3.2e-30 Score=176.27 Aligned_cols=155 Identities=16% Similarity=0.309 Sum_probs=121.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC--CCCCCCCCCccceeeE----Ee-eCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATG--GYSEDMIPTVGFNMRK----VT-KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~--~~~~~~~~t~~~~~~~----~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+||+++|++|||||||++++..+ .++..+.+|.+..+.. ++ ...+.+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 6778888888755432 22 34589999999999999888899999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH-HHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED-LMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|+++.+++..+..|+..+.... .+.|+++|+||+|+.+...... ..+.+. .....+++++||+++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999988888877765542 5689999999999965432111 111111 11234699999999999999
Q ss_pred HHHHHHHHh
Q 029978 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+++.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998865
No 90
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=3.2e-30 Score=175.71 Aligned_cols=155 Identities=23% Similarity=0.379 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--Ee--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.+..+...+.++.+.++.. +. ...+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999988887777777654432 32 23467999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++..+..|+..+..... .+.|+++|+||+|+.... ..++...... ...++++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-----ELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEEeCCCCCCHHHHH
Confidence 99999999999888887765433 479999999999994322 2222222211 123579999999999999999
Q ss_pred HHHHHHh
Q 029978 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+++.+.+
T Consensus 155 ~~i~~~l 161 (161)
T cd01861 155 RKIASAL 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 91
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=2.3e-30 Score=178.67 Aligned_cols=159 Identities=19% Similarity=0.269 Sum_probs=119.2
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCC
Q 029978 22 LSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
|+++|++|||||||++++.++.+...+.+|....+. ..+...+.+.+|||||++.+...+..+++.+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 589999999999999999999998887777654432 23334568999999999999888888999999999999999
Q ss_pred CCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCCH-hHHHH--------HcCCCCcCCCc-eeEEEeeeCCCC
Q 029978 99 DYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-EDLME--------QMGLKSITDRE-VCCYMISCKNST 167 (184)
Q Consensus 99 ~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~~~Sa~~~~ 167 (184)
+.++|..+.. |+..+.... .++|+++|+||+|+...... ++..+ ........... .++++|||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999998865 555554432 57999999999999653210 00100 00000011122 369999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
|++++|+.+.+.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999987654
No 92
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=8.9e-31 Score=178.65 Aligned_cols=155 Identities=28% Similarity=0.519 Sum_probs=127.4
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
||+++|++|||||||++++.++.++..+.+|.+..... .+...+.+.+||++|++.+.......++.+|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998655543 33455789999999999999989999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--CCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+++++++..+..|+..+..... .+.|+++|+||.|+.+. ...++..+... ....+++++||+++.||.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-----ELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-----HTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-----HhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999988887765544 67999999999999863 22233222221 1124799999999999999999
Q ss_pred HHHHHhh
Q 029978 175 WLVKHSK 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 93
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=1.6e-29 Score=174.40 Aligned_cols=160 Identities=18% Similarity=0.230 Sum_probs=119.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||++++.++.+...+.+|...... ..+...+.+.+|||||++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999888777777653321 233334678999999999998888889999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCC---------CcC-CCceeEEEeeeCCC
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK---------SIT-DREVCCYMISCKNS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~Sa~~~ 166 (184)
++++++|......|...+... ..+.|+++|+||+|+.+.....+........ ... ....++++|||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999988875444333332 4689999999999986542211111111100 001 12236999999999
Q ss_pred CCHHHHHHHHHHHh
Q 029978 167 TNIDTVIDWLVKHS 180 (184)
Q Consensus 167 ~~v~~l~~~i~~~~ 180 (184)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
No 94
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=3.7e-29 Score=172.19 Aligned_cols=159 Identities=25% Similarity=0.413 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+.....+|.+..... .....+.+.+||+||++.+...+..+++.+|+++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999998887777777654432 2334477889999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCC---CCCCcEEEEeeCCCccCc--CCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPS---LNGIPLLVLGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~---~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
|+++++++.....|...+..... ..++|+++|+||+|+... ...++..+.... ....+++++||++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS----NGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH----cCCceEEEEECCCCCCHH
Confidence 99999888888777666544322 347999999999999732 223333222221 113479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++.+.+.+.+
T Consensus 157 ~l~~~i~~~~~~ 168 (172)
T cd01862 157 QAFETIARKALE 168 (172)
T ss_pred HHHHHHHHHHHh
Confidence 999999987764
No 95
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=7.8e-30 Score=174.12 Aligned_cols=156 Identities=26% Similarity=0.400 Sum_probs=124.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee----eEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|+|||||++++.++.+.....+|.+... ..++...+.+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999988776777766433 22344457899999999999888888899999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++.+++.....|+..+..... .++|+++++||+|+.... ..++..+.... ...+++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYADE-----NGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHH
Confidence 999999999998888887766543 689999999999987422 22332222111 1246999999999999999
Q ss_pred HHHHHHHh
Q 029978 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
++++.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99998875
No 96
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=6.7e-30 Score=174.46 Aligned_cols=158 Identities=21% Similarity=0.335 Sum_probs=126.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||++++.++.+...+.++....+. ..+...+.+.+||+||++.+...+..+++.++++++++|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999998888777777654332 233445789999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--CCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
++++.++.....++..+.......++|+++|+||+|+... ....+...... ....+++++||++|.|++++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-----QWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999888888876655568999999999999762 12222111111 1124699999999999999999
Q ss_pred HHHHHhhh
Q 029978 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
.+.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99987764
No 97
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=9.6e-30 Score=178.64 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccch--------HhHHHhccC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFR--------SMWERYCRA 87 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~~ 87 (184)
++|+++|.+|||||||++++.++.++..+.||.+.... ..+...+.+.+|||||.+.+. ......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998888888764332 233444789999999965431 113345789
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKP--SLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+|++++|||+++++++..+..|+..+.... ...++|+++|+||+|+..... ..+..+.+. .....+++++|||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV---RKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH---HHhcCCcEEEecCC
Confidence 999999999999999999988887776543 246799999999999965321 111122111 01124579999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 029978 165 NSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~ 181 (184)
+|.||+++|+.+++.+.
T Consensus 158 ~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 158 YNWHILLLFKELLISAT 174 (198)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999997654
No 98
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=8e-30 Score=174.13 Aligned_cols=157 Identities=24% Similarity=0.439 Sum_probs=124.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEee--CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.+..+.....++.+.... .+.. ....+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988887777777765432 2333 3378999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++..+..|+..+..... .++|+++|+||+|+.... ..++..+... ...++++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAE-----EHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHH
Confidence 99999999888887777655433 589999999999987532 2222222211 123469999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.+.+.+.+
T Consensus 155 ~~i~~~~~~ 163 (164)
T smart00175 155 EELAREILK 163 (164)
T ss_pred HHHHHHHhh
Confidence 999988754
No 99
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=4e-30 Score=176.00 Aligned_cols=156 Identities=18% Similarity=0.233 Sum_probs=118.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee---eEEeeCCEEEEEEeCCCccc-chHhHHHhccCCCEEEEEEe
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPR-FRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~i~v~d 96 (184)
+|+++|++|+|||||++++..+.+...+.+|..... ..++...+.+++||+||++. .......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 589999999999999999998888777777664322 23444557899999999985 34456778899999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCC-CHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNST-NIDTV 172 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~l 172 (184)
++++++|..+..|+..+..... ..+.|+++|+||+|+.... ..++..+... ....+++++||+++. ||+++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLAS-----ELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHH-----HcCCEEEEeCCCCCchhHHHH
Confidence 9999999988887766654432 4579999999999985432 2222222111 112469999999995 99999
Q ss_pred HHHHHHHhh
Q 029978 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
|+.+.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
No 100
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=6.9e-29 Score=170.52 Aligned_cols=156 Identities=16% Similarity=0.204 Sum_probs=123.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC-CCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS-EDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~-~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
++.+||+++|.+|||||||++++.++.+. ..+.+|.+..+. .++...+.+.+||++|++.+...+..+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 45789999999999999999999999998 888888875432 2334447899999999999888888889999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-----CHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-----SKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
++|+|++++.++..+..|+..+... .++|+++|+||+|+.+.. ..+++.+.++. ..++++||+++
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL-------PPPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCC-------CCCEEEEeccC
Confidence 9999999988888877776654322 479999999999986432 12333333222 13589999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.|++++|+.+.+.+.+
T Consensus 152 ~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 152 DSSNELFTKLATAAQY 167 (169)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 9999999999987653
No 101
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=1.4e-29 Score=179.59 Aligned_cols=159 Identities=19% Similarity=0.275 Sum_probs=126.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|+|||||++++.++.+...+.+|++.... .++...+.+.+|||+|++.+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 34589999999999999999999999888887788775542 23334478999999999999888899999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.... ..++..+... ...++++++||+++.|++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE 157 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999999999888877665432 3579999999999996532 2222222221 123469999999999999
Q ss_pred HHHHHHHHHhh
Q 029978 171 TVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
++|+++.+.+.
T Consensus 158 e~f~~l~~~~~ 168 (210)
T PLN03108 158 EAFIKTAAKIY 168 (210)
T ss_pred HHHHHHHHHHH
Confidence 99999987764
No 102
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=1.3e-29 Score=177.66 Aligned_cols=156 Identities=21% Similarity=0.296 Sum_probs=121.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC-CCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSE-DMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~-~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+||+++|++|+|||||++++.++.+.. .+.+|.+..+. .++...+.+.+||++|++++...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988874 57777764432 2334457788999999999988888899999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC------HhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS------KEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
||+++.+++..+..|+..+... ..+.|+++|+||+|+.+... .++..+.. ....++++++||+++.|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 153 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFA-----DEIKAQHFETSSKTGQN 153 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHH-----HHcCCeEEEEeCCCCCC
Confidence 9999999998887777766543 24789999999999864321 11111111 11234689999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029978 169 IDTVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~~~~ 182 (184)
++++++.+.+.+.+
T Consensus 154 v~~l~~~i~~~~~~ 167 (193)
T cd04118 154 VDELFQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987643
No 103
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=4.4e-29 Score=170.10 Aligned_cols=155 Identities=25% Similarity=0.440 Sum_probs=124.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.++.+.....++.+..... .....+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999888877677777654432 2334478999999999999888889999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++.+++..+..|+..+.......+.|+++|+||+|+.... ..++..+... ...++++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-----KHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-----HcCCEEEEEecCCCCCHHHHHH
Confidence 999999999888877777666556789999999999997332 2333222221 1245799999999999999999
Q ss_pred HHHHH
Q 029978 175 WLVKH 179 (184)
Q Consensus 175 ~i~~~ 179 (184)
.+.+.
T Consensus 156 ~~~~~ 160 (161)
T cd01863 156 ELVEK 160 (161)
T ss_pred HHHHh
Confidence 98875
No 104
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=4.6e-30 Score=177.06 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=116.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee---eEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+|++++|++|+|||||+.++.++.+...+.+|....+ ..++...+.+.+|||||++.+...+..+++.+|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999999999888888764222 2233445789999999999998888889999999999999
Q ss_pred CCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCCH---------hHHHHHcCCCCcCC-CceeEEEeeeCC
Q 029978 97 AADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---------EDLMEQMGLKSITD-REVCCYMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~Sa~~ 165 (184)
++++++|..... |+..+... ..+.|+++|+||+|+...... +.+..+........ ...++++|||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999988754 55455432 246899999999998643210 00000000000111 123799999999
Q ss_pred CCCHHHHHHHHHH
Q 029978 166 STNIDTVIDWLVK 178 (184)
Q Consensus 166 ~~~v~~l~~~i~~ 178 (184)
|.||+++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998864
No 105
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=5.7e-30 Score=167.02 Aligned_cols=161 Identities=23% Similarity=0.358 Sum_probs=133.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE-----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~-----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+++.++|++-+|||+|++.++.+.+..-..||++.++.. -++..+++++|||+||++++....++++.+-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 46889999999999999999999999999999999977642 2345589999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCC-CCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLN-GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|||.+|+++|..+..|..+..-....+ ++-..+||+|+|+... +++..+.+......+...++++||++|.||++
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq---RqVt~EEaEklAa~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ---RQVTAEEAEKLAASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh---ccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence 9999999999999999988765554434 4445779999999765 34433334444445556799999999999999
Q ss_pred HHHHHHHHhh
Q 029978 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
-|..+.+.+.
T Consensus 164 AF~mlaqeIf 173 (213)
T KOG0091|consen 164 AFDMLAQEIF 173 (213)
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 106
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=3.3e-29 Score=171.70 Aligned_cols=159 Identities=21% Similarity=0.264 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+||+++|++|+|||||++++.++.++..+.++...... .++...+.+.+|||||++.+...+..++..+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999998887665444332222 2334668999999999988877777778999999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH---hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 98 ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
++++++..+..+|........ .+.|+++|+||+|+.+.... ++....+... .....++++|||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE--FREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHH--HhcccEEEEeccccccCHHHHHH
Confidence 999999987655544333323 47999999999999765432 1111111000 00112699999999999999999
Q ss_pred HHHHHhh
Q 029978 175 WLVKHSK 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
.+.+.+.
T Consensus 158 ~~~~~~~ 164 (166)
T cd01893 158 YAQKAVL 164 (166)
T ss_pred HHHHHhc
Confidence 9988764
No 107
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=1.3e-29 Score=180.86 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=117.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC-CCCCCCcc--cee--eEEeeCCEEEEEEeCCCcccchHhHHHhcc-CCCEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS-EDMIPTVG--FNM--RKVTKGNVTIKLWDLGGQPRFRSMWERYCR-AVSAIVY 93 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~-~~~~~t~~--~~~--~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~~~~i~ 93 (184)
+||+++|++|+|||||++++..+.+. ..+.++.+ ... ..++.....+.+|||||++. .....+++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 66666664 222 23344567899999999982 23344556 8999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||++++.+|.....|+..+.......++|+|+|+||+|+.+... .++. .... ....++++++||+++.||++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~a----~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RACA----VVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHHH----HHcCCeEEEecCCCCCCHHH
Confidence 999999999998888888776654446899999999999865422 1211 1111 11234699999999999999
Q ss_pred HHHHHHHHhh
Q 029978 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
+++.+.+.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 108
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=7.6e-30 Score=178.58 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=112.5
Q ss_pred ceEEEEEcCCCCChHHHHH-HHHcC-----CCCCCCCCCccc-e-ee-----------EEeeCCEEEEEEeCCCcccchH
Q 029978 19 EMELSLIGLQNAGKTSLVN-VIATG-----GYSEDMIPTVGF-N-MR-----------KVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~-~l~~~-----~~~~~~~~t~~~-~-~~-----------~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
.+||+++|++|||||||+. ++.++ .+...+.||++. . +. .++...+.+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 56543 345667788742 1 11 23455689999999999753
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCC----------------HhHH
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALS----------------KEDL 142 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~----------------~~~~ 142 (184)
....+++.+|++++|||++++++|..+.. |...+.... .+.|+++|+||+|+.+... .+.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 34567899999999999999999999974 656554432 4789999999999864200 0111
Q ss_pred HHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 143 MEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
....+........+++++|||++|.||+++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 1111111222234579999999999999999999864
No 109
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=2.3e-29 Score=178.78 Aligned_cols=161 Identities=21% Similarity=0.371 Sum_probs=122.9
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--EeeCCEEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
..+..+||+++|++|+|||||++++.++.+. .+.+|.+.... . ++...+.+.+|||||++++...+..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 3455799999999999999999999987663 55666664432 2 23345789999999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcC-CCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSK-PSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+++|||++++++|..+...|...... ....+.|+++|+||+|+..... .++...... ...++++++||+++.
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~SAk~~~ 163 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK-----EHGCLFLECSAKTRE 163 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCEEEEEeCCCCC
Confidence 99999999999999988765544332 2235689999999999965422 222222111 123469999999999
Q ss_pred CHHHHHHHHHHHhh
Q 029978 168 NIDTVIDWLVKHSK 181 (184)
Q Consensus 168 ~v~~l~~~i~~~~~ 181 (184)
|++++++.+.+.+.
T Consensus 164 ~v~~l~~~l~~~~~ 177 (211)
T PLN03118 164 NVEQCFEELALKIM 177 (211)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 110
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.96 E-value=3.6e-28 Score=158.59 Aligned_cols=166 Identities=31% Similarity=0.589 Sum_probs=148.5
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..++++|.++|..|+||||++++|.+ .......||.++.......+.+.+++||.+||...+..|..|+...|++|+|+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~-~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvv 91 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLG-EDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVV 91 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcC-CCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEE
Confidence 35689999999999999999999974 44778899999999999999999999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc-CCCceeEEEeeeCCCCCHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|++++-.+++-...+.+++......+.|++++.||.|+......+++....++... +.+.++++-|||.+|.++.+-++
T Consensus 92 DssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gid 171 (185)
T KOG0073|consen 92 DSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGID 171 (185)
T ss_pred ECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHH
Confidence 99998888888888887777666678999999999999988888899888887776 67788999999999999999999
Q ss_pred HHHHHhhh
Q 029978 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
++..-+.+
T Consensus 172 WL~~~l~~ 179 (185)
T KOG0073|consen 172 WLCDDLMS 179 (185)
T ss_pred HHHHHHHH
Confidence 98876653
No 111
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=8.2e-29 Score=171.01 Aligned_cols=159 Identities=19% Similarity=0.262 Sum_probs=118.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.||+++|++|||||||++++.++.++..+.+|...... .++...+.+.+|||+|++.+...+...++.+|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999998888888764432 233445789999999999888877788899999999999
Q ss_pred CCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC---------c-CCCceeEEEeeeCC
Q 029978 97 AADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS---------I-TDREVCCYMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~Sa~~ 165 (184)
+++.+++..+.. |...+... ..+.|+++|+||+|+.+.....+......... . .....++++|||++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999988888765 44444332 24789999999999865422111111100000 0 01134799999999
Q ss_pred CCCHHHHHHHHHHHh
Q 029978 166 STNIDTVIDWLVKHS 180 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~ 180 (184)
|.|++++|+.+.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 112
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=4.5e-29 Score=169.96 Aligned_cols=155 Identities=24% Similarity=0.350 Sum_probs=120.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.++.+.....++...... . .....+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999988887666666543332 2 2234467999999999999888888999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++.+++.....|...+..... .++|+++|+||+|+..... .++..+... ....+++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHH
Confidence 99999998888887777765543 3799999999999975322 222222211 123468999999999999999
Q ss_pred HHHHHHh
Q 029978 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998765
No 113
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=3.2e-30 Score=167.41 Aligned_cols=160 Identities=24% Similarity=0.341 Sum_probs=128.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..||++++|+.++|||||+-++..+.|..+...|....+. .+......+.+|||+||++|..+=+-|+++++++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 4699999999999999999999999998887777663332 233445679999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|||++++++|+....|..++..... ..+-+++|+||+|+.++ +.+..+.++.......+.++++||+++.||.++|
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEee---R~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elF 167 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEE---RQVTRQEAEAYAESVGALYMETSAKDNVGISELF 167 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHh---hhhhHHHHHHHHHhhchhheecccccccCHHHHH
Confidence 9999999999999999888876644 67889999999999765 2222222222222234459999999999999999
Q ss_pred HHHHHHhh
Q 029978 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
+.+.+...
T Consensus 168 e~Lt~~Mi 175 (218)
T KOG0088|consen 168 ESLTAKMI 175 (218)
T ss_pred HHHHHHHH
Confidence 99887644
No 114
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.2e-28 Score=169.28 Aligned_cols=159 Identities=23% Similarity=0.365 Sum_probs=122.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+...+|+++|++|+|||||++++.++.+.....+|.+.... .+....+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 34589999999999999999999988887777777664332 22333467899999999999888889999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH-hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|+++.+++.....|...+... ...+.|+++|+||+|+.+.... .+..+.+... ...+++++||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~----~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSDA----QDMYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHH----cCCeEEEeeCCCCCCHHH
Confidence 999999988888887776655433 2357999999999998654221 2222222211 124699999999999999
Q ss_pred HHHHHHHHh
Q 029978 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+++.|.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998764
No 115
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=8e-29 Score=171.87 Aligned_cols=158 Identities=17% Similarity=0.324 Sum_probs=125.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.||+++|++|+|||||++++.++.+...+.+|...... ... ...+.+.+|||||++++...+..++..+++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999988887777777654322 222 234678999999999998888899999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+++..++..+..++..+.+.....+.|+++|+||+|+.... ..++...... ....+++++||+++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-----SWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999998888876655788999999999986432 2222211111 1124699999999999999999
Q ss_pred HHHHHhhh
Q 029978 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
++.+.+..
T Consensus 157 ~l~~~~~~ 164 (180)
T cd04137 157 LLIEEIEK 164 (180)
T ss_pred HHHHHHHH
Confidence 99987754
No 116
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=3.9e-28 Score=170.83 Aligned_cols=157 Identities=21% Similarity=0.295 Sum_probs=122.9
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccc-eeeEEeeC--CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGF-NMRKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~-~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
||+++|++|+|||||+++++++.+...+.+|... ....+... .+.+++||+||+..+..++..++..+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 5899999999999999999999888777777642 22223333 37899999999999888888899999999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 98 ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
++.+++..+..++..+.......++|+++|+||+|+..... .++..+.... ....+++++||++|.|++++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVEL----DWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHh----hcCCcEEEecCCCCCCHHHHHH
Confidence 99999999888877777665556899999999999865311 1222211111 1224689999999999999999
Q ss_pred HHHHHhh
Q 029978 175 WLVKHSK 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998764
No 117
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=1.4e-28 Score=169.10 Aligned_cols=158 Identities=17% Similarity=0.285 Sum_probs=116.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||++++.++.+...+.++...... ..+...+.+.+||+||++.+.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999998887666666543222 223345789999999999887777888899999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH--------HHHHcCCCCcC-CCceeEEEeeeCCCC
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED--------LMEQMGLKSIT-DREVCCYMISCKNST 167 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 167 (184)
++++.++......|........ .+.|+++|+||+|+.+...... +.......... ....+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9998888887765554443322 4799999999999976543211 00111111111 122379999999999
Q ss_pred CHHHHHHHHHH
Q 029978 168 NIDTVIDWLVK 178 (184)
Q Consensus 168 ~v~~l~~~i~~ 178 (184)
|++++++.|.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999876
No 118
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=3.6e-28 Score=165.19 Aligned_cols=155 Identities=23% Similarity=0.357 Sum_probs=122.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEeeC--CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
||+++|++|||||||++++.+..+...+.++...... ..... .+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 5899999999999999999988887777777663322 23233 47899999999999888889999999999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 98 ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
++++++.....++..+.........|+++|+||+|+.... ..++...... ....+++++||+++.|++++++.
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999888888888766554689999999999997632 1222222211 11146999999999999999999
Q ss_pred HHHHh
Q 029978 176 LVKHS 180 (184)
Q Consensus 176 i~~~~ 180 (184)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
No 119
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.6e-27 Score=149.31 Aligned_cols=170 Identities=32% Similarity=0.631 Sum_probs=157.0
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
...+..++++|+.+|-.++||||++.++.- .-+....||+++....+...++.+++||.+|+.+.+..|..|+.+..++
T Consensus 10 ~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl-~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqgl 88 (180)
T KOG0071|consen 10 SKIFGNKEMRILMLGLDAAGKTTILYKLKL-GQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 88 (180)
T ss_pred HHHhCcccceEEEEecccCCceehhhHHhc-CCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceE
Confidence 456788899999999999999999999974 4456677899999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||+|+.+.+.+.+.+..+..+++....++.|+.+.+||.|+++...++|+.+.+.+...+.+.+.+.+++|.+|.|+.+
T Consensus 89 IFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 89 IFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 99999999999999999999998888888999999999999999999999999999998888888899999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
-+.++...++.
T Consensus 169 glswlsnn~~~ 179 (180)
T KOG0071|consen 169 GLSWLSNNLKE 179 (180)
T ss_pred HHHHHHhhccC
Confidence 99999987764
No 120
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.95 E-value=4e-27 Score=159.48 Aligned_cols=153 Identities=26% Similarity=0.473 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--Ee--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
++|+++|++|+|||||++++.+..+...+.+|.+..... +. .....+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999999998888877777755543 22 23478999999999999889999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc--CcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP--EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++..+..|+..+..... .+.|+++++||+|+. .....++..+.... ...+++++||+++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-----NGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHH
Confidence 99998888888887776665432 579999999999995 22233333332221 34579999999999999999
Q ss_pred HHHHH
Q 029978 174 DWLVK 178 (184)
Q Consensus 174 ~~i~~ 178 (184)
++|.+
T Consensus 155 ~~i~~ 159 (159)
T cd00154 155 QSLAE 159 (159)
T ss_pred HHHhC
Confidence 98863
No 121
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=2.3e-27 Score=165.53 Aligned_cols=156 Identities=21% Similarity=0.265 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.|++++|++|+|||||++++..+.++..+.+|....+.. .+.....+.+||++|++.+.......++.++++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 589999999999999999999888887777776544332 23334678999999998887766677889999999999
Q ss_pred CCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCC------------HhHHHHHcCCCCcCCCceeEEEeee
Q 029978 97 AADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALS------------KEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++.+++..+.. |...+.... .++|+++|+||+|+.+... .++. ..... .....++++|||
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~e~Sa 155 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQG-KRVAK---EIGAKKYMECSA 155 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHH-HHHHH---HhCCcEEEEccC
Confidence 999999998875 445444332 4699999999999854211 0111 11110 011236999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
++|.|++++|+.+.+.+.
T Consensus 156 ~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 156 LTGEGVDDVFEAATRAAL 173 (187)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999997654
No 122
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=5.3e-28 Score=168.52 Aligned_cols=162 Identities=23% Similarity=0.337 Sum_probs=135.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
...+|+++|.+|+|||+|..++..+.|...+.||++..+. .++...+.+.++||+|++.+..+...+++..|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 4679999999999999999999999999999999985443 3566678999999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++.||..+...+..+.+......+|+++||||+|+.... ++..+.+........++++++||+.+.||+++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R---~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERER---QVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcc---ccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 9999999999999999998666666778999999999998741 1111112111333455699999999999999999
Q ss_pred HHHHHhhh
Q 029978 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
.+.+.+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99987654
No 123
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=1.3e-26 Score=165.10 Aligned_cols=160 Identities=23% Similarity=0.414 Sum_probs=128.2
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE----eeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
....+||+++|++|||||||++++..+.+...+.+|.+...... +.+.+.+.+|||+|++.+...+..+++.++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 34569999999999999999999988889888889988666542 34568999999999999988888899999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|+|+++..++..+..|+..+.... .++|+++|+||+|+.+.....+..... ......++++||++|.|+++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFH-----RKKNLQYYDISAKSNYNFEK 158 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999888877775432 578999999999986532212222111 11234689999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
.+.+|.+.+..
T Consensus 159 ~f~~ia~~l~~ 169 (215)
T PTZ00132 159 PFLWLARRLTN 169 (215)
T ss_pred HHHHHHHHHhh
Confidence 99999887653
No 124
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.5e-29 Score=163.42 Aligned_cols=160 Identities=21% Similarity=0.367 Sum_probs=130.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----Ee---------eCCEEEEEEeCCCcccchHhHHHhcc
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VT---------KGNVTIKLWDLGGQPRFRSMWERYCR 86 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~---------~~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (184)
++...+|++|+||||++.++..+.|.++...|++.++.. ++ ...+.+++|||+||++|+++.-.+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 455789999999999999999999999999998866543 11 12378999999999999999999999
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.+=+++++||+++.+||-+.+.|+..+..+.+..+.-|++++||+|+++... +.+.........-..|++++||-+|
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~---Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRV---VSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhh---hhHHHHHHHHHHhCCCeeeeccccC
Confidence 9999999999999999999999999998777777888999999999977532 2221111111222447999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.||++-.+.+++.+.+
T Consensus 167 ~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 167 TNVEKAVELLLDLVMK 182 (219)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999998888877653
No 125
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=7.9e-27 Score=163.71 Aligned_cols=117 Identities=27% Similarity=0.401 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe-------eCCEEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT-------KGNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~-------~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
+||+++|++|||||||++++.++.+...+.+|++.... ... ...+.+++|||+|++.+...+..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999999888899874432 121 245789999999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcCC------------------CCCCCcEEEEeeCCCccCc
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSKP------------------SLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~piilv~nK~D~~~~ 136 (184)
+|+|||++++++|..+..|+.++.... ...++|+++|+||+|+.+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 999999999999999999988876531 2357899999999999654
No 126
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=1.3e-25 Score=154.27 Aligned_cols=157 Identities=20% Similarity=0.198 Sum_probs=107.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCCE-EEEEEeCCCccc----c---hHhHHHhccCCCE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGNV-TIKLWDLGGQPR----F---RSMWERYCRAVSA 90 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~----~---~~~~~~~~~~~~~ 90 (184)
+|+++|.+|||||||++++.+.... ..+..|.......+..... .+.+|||||+.. . .......+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 5899999999999999999865432 1122343333333444444 899999999632 1 1122233456999
Q ss_pred EEEEEeCCCC-CChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 91 IVYVVDAADY-DNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 91 ~i~v~d~~~~-~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|+++. +++.....+...+..... ..++|+++|+||+|+.+.....+......... ...+++++||+++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL---WGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC---CCCCEEEEecCCCCC
Confidence 9999999998 788887777666654322 24789999999999976544333322221110 234689999999999
Q ss_pred HHHHHHHHHHHh
Q 029978 169 IDTVIDWLVKHS 180 (184)
Q Consensus 169 v~~l~~~i~~~~ 180 (184)
++++++++.+++
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=2.1e-25 Score=152.94 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=104.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCC--CCCCccceeeEEeeCCEEEEEEeCCCcccc----h-----HhHHHhccCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF----R-----SMWERYCRAVS 89 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~----~-----~~~~~~~~~~~ 89 (184)
+|+++|++|+|||||++++.+..+... ...|...........+..+.+|||||+... . .........+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 689999999999999999998766422 223444444444556689999999997421 0 11111123468
Q ss_pred EEEEEEeCCCCCCh--HHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 90 AIVYVVDAADYDNL--PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 90 ~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|+|+++..++ .....++..+.... .+.|+++|+||+|+.......+. +.. ......++++|||++|.
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEI-EEE----EELEGEEVLKISTLTEE 154 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHH-HHh----hhhccCceEEEEecccC
Confidence 99999999987654 44444555543322 47999999999999765332321 111 11234579999999999
Q ss_pred CHHHHHHHHHHHh
Q 029978 168 NIDTVIDWLVKHS 180 (184)
Q Consensus 168 ~v~~l~~~i~~~~ 180 (184)
|++++++++.+.+
T Consensus 155 gi~~l~~~l~~~~ 167 (168)
T cd01897 155 GVDEVKNKACELL 167 (168)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998875
No 128
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.94 E-value=5.6e-27 Score=160.36 Aligned_cols=163 Identities=18% Similarity=0.322 Sum_probs=127.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEe-eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVT-KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+|++++|+..+|||+|+..+..+.|+..+.||+...+. .++ +..+.+.+|||+||++|..++...+..+|++++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 4689999999999999999999999999999999974442 353 677899999999999998888788999999999
Q ss_pred EEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc---------CC-CceeEEEee
Q 029978 94 VVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI---------TD-REVCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~S 162 (184)
||++.++++|.++.. |+.++..+ + +++|+|+||+|.|+.+.....+.....+.... .. ....+++||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~-c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHH-C-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhh-C-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 999999999999774 55555443 4 79999999999999854211111111111111 11 125699999
Q ss_pred eCCCCCHHHHHHHHHHHhhh
Q 029978 163 CKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~ 182 (184)
|++..|++++|+..+.++..
T Consensus 161 a~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhc
Confidence 99999999999999887643
No 129
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=1.1e-28 Score=156.01 Aligned_cols=151 Identities=27% Similarity=0.436 Sum_probs=123.4
Q ss_pred EEEcCCCCChHHHHHHHHcCCCCC-CCCCCcccee----eEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeC
Q 029978 23 SLIGLQNAGKTSLVNVIATGGYSE-DMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 23 ~iiG~~g~GKStli~~l~~~~~~~-~~~~t~~~~~----~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+++|++++|||+|+-++..+-|-. ....|++.++ ..++..++++++|||+||++|++....+++.+|++++++|+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 368999999999999888776643 3445666444 34567789999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc-----CCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 98 ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA-----LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
.+..||.+.+.|+.++-.+.. ..+.+++++||+|+.++ ++-+.+.+.++ +|++++||++|.||+-.
T Consensus 81 ankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~--------ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYG--------IPFMETSAKTGFNVDLA 151 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHHHHC--------CCceeccccccccHhHH
Confidence 999999999999988866543 67889999999999664 22344444444 36999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|-.|.+.+++
T Consensus 152 f~~ia~~l~k 161 (192)
T KOG0083|consen 152 FLAIAEELKK 161 (192)
T ss_pred HHHHHHHHHH
Confidence 9988877664
No 130
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.7e-26 Score=146.72 Aligned_cols=155 Identities=21% Similarity=0.304 Sum_probs=128.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee----eEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.-++-.|+|+-|+|||+|+.++....|..+-.+|++..+ ..+...++++++|||+|+++|+...+++++++...++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 347889999999999999999999999988888888554 3466778999999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH-----hHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|+|++.+..+..+-.|+.+..... .++..+++++||.|+....++ .+..++- ...++++||++|.|
T Consensus 90 vyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeeak~faeen--------gl~fle~saktg~n 160 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAKEFAEEN--------GLMFLEASAKTGQN 160 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHHHHHhhc--------CeEEEEecccccCc
Confidence 999999999999988887775543 388899999999999765331 2222222 33589999999999
Q ss_pred HHHHHHHHHHHhh
Q 029978 169 IDTVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~~~ 181 (184)
|++.|-...+.+.
T Consensus 161 vedafle~akkiy 173 (215)
T KOG0097|consen 161 VEDAFLETAKKIY 173 (215)
T ss_pred HHHHHHHHHHHHH
Confidence 9998866655544
No 131
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.94 E-value=1.5e-25 Score=152.96 Aligned_cols=152 Identities=17% Similarity=0.162 Sum_probs=101.9
Q ss_pred EEEEEcCCCCChHHHHHHHHcC---CCCCCC--CCCccceeeEEeeC-CEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATG---GYSEDM--IPTVGFNMRKVTKG-NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~---~~~~~~--~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.|+++|++|+|||||++++.+. .++... ..|........... ...+.+|||||++++......+++.+|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 5899999999999999999853 233222 23444444444443 67899999999998877777788899999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC----HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS----KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+++... ......+.. .... ...|+++|+||+|+.+... .+++.+.+... .....+++++||+++.|++
T Consensus 82 ~d~~~~~~-~~~~~~~~~-~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 82 VAADEGIM-PQTREHLEI-LELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EECCCCcc-HhHHHHHHH-HHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCcCHH
Confidence 99986221 111122221 1111 1249999999999975421 12222222211 0124579999999999999
Q ss_pred HHHHHHHH
Q 029978 171 TVIDWLVK 178 (184)
Q Consensus 171 ~l~~~i~~ 178 (184)
++++.+.+
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99998864
No 132
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=6.4e-25 Score=152.07 Aligned_cols=151 Identities=19% Similarity=0.290 Sum_probs=107.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC-------CCCCCCCCc------cce----eeEE-----eeCCEEEEEEeCCCcccch
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGG-------YSEDMIPTV------GFN----MRKV-----TKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~-------~~~~~~~t~------~~~----~~~~-----~~~~~~~~~~D~~g~~~~~ 78 (184)
+|+++|++++|||||++++++.. +...+.++. +.. .... +...+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998631 111222221 111 1112 3456889999999999999
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH---hHHHHHcCCCCcCCCc
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---EDLMEQMGLKSITDRE 155 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 155 (184)
..+..+++.+|++++|+|+++..++.....+.. ... .++|+++|+||+|+.+.... +++.+.++.. .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----P 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----c
Confidence 999999999999999999998766555544432 221 46899999999998653221 2232332221 1
Q ss_pred eeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 156 VCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 156 ~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
..++++||++|.|++++++++.+.+.
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 24899999999999999999998764
No 133
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=2.1e-24 Score=152.53 Aligned_cols=154 Identities=23% Similarity=0.256 Sum_probs=106.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCCccceeeEEeeCC-EEEEEEeCCCcccc---------hHhHHHh
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSE--DMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRF---------RSMWERY 84 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~---------~~~~~~~ 84 (184)
+..++|+++|++|||||||++++.+..+.. .+.+|.......+...+ ..+.+|||||.... ... ...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRST-LEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHH-HHH
Confidence 345899999999999999999999876432 23445444444443333 48999999997321 111 123
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+..+|++++|+|++++.++.....+...+ ......++|+++|+||+|+.+..... .. ......+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcC
Confidence 56899999999999887776654444333 33333578999999999997653222 11 11234469999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 029978 165 NSTNIDTVIDWLVKHS 180 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~ 180 (184)
++.|+++++++|.+.+
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998754
No 134
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=2.1e-25 Score=157.35 Aligned_cols=161 Identities=25% Similarity=0.311 Sum_probs=104.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCC-----------cccchHhHHHhc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG-----------QPRFRSMWERYC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~ 85 (184)
...++|+++|.+|+|||||++++.+..+.....++.......+... .+.+||||| ++.++..+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 3468999999999999999999998776655555444433344333 589999999 455555544444
Q ss_pred ----cCCCEEEEEEeCCCCCChHH---------HHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCC
Q 029978 86 ----RAVSAIVYVVDAADYDNLPV---------SRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKS 150 (184)
Q Consensus 86 ----~~~~~~i~v~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~ 150 (184)
..++++++|+|.+....+.. ....+...+. ..++|+++|+||+|+.+.. ..+++.+.++...
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 34578888888865322100 0111122222 2479999999999996543 2334444444321
Q ss_pred cC-CCceeEEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 151 IT-DREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 151 ~~-~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
.. ....+++++||++| |+++++++|.+.+.+.
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 11 11235899999999 9999999999887653
No 135
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=4.8e-24 Score=144.11 Aligned_cols=153 Identities=20% Similarity=0.332 Sum_probs=115.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--EeeCC--EEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++....++..+.++....... +...+ +.+.+||+||++.+...+....+.++.++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 689999999999999999999888776766666655543 44455 78999999999999888888889999999999
Q ss_pred eCCCC-CChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADY-DNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~-~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|.... .++.... .+...+..... .+.|+++|+||+|+......++........ ...+++++||+++.|+++++
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~sa~~~~gv~~~~ 156 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKL----NGEPIIPLSAETGKNIDSAF 156 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhc----cCCceEEeecCCCCCHHHHH
Confidence 99876 5665555 44444443332 288999999999997653233333332221 22359999999999999999
Q ss_pred HHHH
Q 029978 174 DWLV 177 (184)
Q Consensus 174 ~~i~ 177 (184)
+.|.
T Consensus 157 ~~l~ 160 (161)
T TIGR00231 157 KIVE 160 (161)
T ss_pred HHhh
Confidence 9864
No 136
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=3e-24 Score=161.82 Aligned_cols=156 Identities=20% Similarity=0.241 Sum_probs=109.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccc-hH-------hHHHhcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-RS-------MWERYCR 86 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-~~-------~~~~~~~ 86 (184)
+..+|+++|.+|||||||++++.+..+. +.+.+|.......+...+..+.+|||||.... .. .....+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~ 130 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLH 130 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhh
Confidence 4569999999999999999999987653 44555655544555667788999999997432 11 1223467
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.+|++++|+|..+ ++.....++...... .+.|.++|+||+|+.+. ...+..+.+... .....++++||++|
T Consensus 131 ~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAktg 201 (339)
T PRK15494 131 SADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALSG 201 (339)
T ss_pred hCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccCc
Confidence 8999999999765 455554444433332 34678899999998653 233444433221 12346999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.|++++++++.+.+.+
T Consensus 202 ~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 202 KNIDGLLEYITSKAKI 217 (339)
T ss_pred cCHHHHHHHHHHhCCC
Confidence 9999999999987653
No 137
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=2.1e-24 Score=161.76 Aligned_cols=159 Identities=17% Similarity=0.201 Sum_probs=112.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEee-CCEEEEEEeCCCccc-------chHhHHHhccCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR-------FRSMWERYCRAVS 89 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~~ 89 (184)
..|+++|.||||||||++++.+.... ..+.+|.......+.. ....+.+||+||... ........+..++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 45899999999999999999864422 2234455555555554 446799999999632 2233444567899
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccCcCCHh-HHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|+|+++.+++.....|..++..+.. ..++|+++|+||+|+.+..... +..+... .....+++++||+++.
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~----~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL----AALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH----HhcCCCEEEEEcCCCC
Confidence 99999999988888888777777754422 2478999999999997543222 1111110 1122469999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
|++++++++.+.+.+
T Consensus 315 GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 315 GLDELLRALWELLEE 329 (335)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988764
No 138
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.6e-25 Score=147.62 Aligned_cols=172 Identities=32% Similarity=0.617 Sum_probs=146.1
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHc-------CCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHh
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIAT-------GGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY 84 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~-------~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 84 (184)
...+.+..+.++|+|..++|||||+.+... +-.+.+..+|++....+++..+-.+.+||..|++..+++|..+
T Consensus 10 ~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 10 KYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred HHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHH
Confidence 345667789999999999999999998863 2224566788888888887778899999999999999999999
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCC-CCcCCCceeEEEeee
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL-KSITDREVCCYMISC 163 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa 163 (184)
+..+|++++++|+++++.|+.....+..+..+....++|+++.+||.|+.+...+.++..-.+. .....+..++.++||
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchh
Confidence 9999999999999999999998888888887777789999999999999988777777666553 233445678999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 029978 164 KNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~~~ 183 (184)
.+|.||++-.+++.+.+..+
T Consensus 170 l~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcccHHHHHHHHHHHHhhc
Confidence 99999999999999887654
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=4.7e-24 Score=146.16 Aligned_cols=156 Identities=22% Similarity=0.260 Sum_probs=108.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEee---CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.|+++|.+|+|||||++++..+.+.....+ |.......... ....+.+|||||++.+...+...++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998776554322 32222233333 3678999999999988888888889999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHH---HcCCCC--cCCCceeEEEeeeCCCCCHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLME---QMGLKS--ITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~Sa~~~~~v~ 170 (184)
|+++...-.. ...+..+ .. .++|+++|+||+|+.... .+...+ .+.... .....++++++||+++.|++
T Consensus 82 d~~~~~~~~~-~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQT-IEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHH-HHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 9987542221 1122222 21 468999999999987532 222222 222111 12234679999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+...+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T cd01887 156 DLLEAILLLAEK 167 (168)
T ss_pred HHHHHHHHhhhc
Confidence 999999987653
No 140
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=4.3e-24 Score=156.85 Aligned_cols=153 Identities=18% Similarity=0.159 Sum_probs=103.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccch--------HhHHHhccCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR--------SMWERYCRAVS 89 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~~~~ 89 (184)
+|+++|.+|+|||||+|++++.... +.+..|...........+..+.+|||||..... ......+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999986542 333344433223334456789999999965321 12345678999
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+.....+....+... ....+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL---EDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh---cCCCceEEEecCCCCCH
Confidence 999999999866553 222332222 468999999999996432211112121111 11226899999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++++.+.+.+.+
T Consensus 153 ~~L~~~l~~~l~~ 165 (270)
T TIGR00436 153 SFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999987753
No 141
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=2.5e-23 Score=140.79 Aligned_cols=145 Identities=18% Similarity=0.160 Sum_probs=104.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccchH--------hHHHhccC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS--------MWERYCRA 87 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~ 87 (184)
+++|+++|++|+|||||++++.+.... .....+.......+......+.+|||||...+.. .....+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 468999999999999999999976532 2222233333334555677899999999754422 23345678
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~ 143 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGE 143 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCC
Confidence 999999999998776655433222 357999999999999765332 122234579999999999
Q ss_pred CHHHHHHHHHHHh
Q 029978 168 NIDTVIDWLVKHS 180 (184)
Q Consensus 168 ~v~~l~~~i~~~~ 180 (184)
|+++++++|.+.+
T Consensus 144 ~v~~l~~~l~~~~ 156 (157)
T cd04164 144 GLDELKEALLELA 156 (157)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998765
No 142
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=1.5e-23 Score=164.60 Aligned_cols=160 Identities=22% Similarity=0.170 Sum_probs=109.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcc----------cchHhH-HH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP----------RFRSMW-ER 83 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~-~~ 83 (184)
...+|+++|.+|+|||||++++++.... .....|.......+...+..+.+|||||.. .+.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 3589999999999999999999977542 223333333333445566778999999953 222221 23
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++.+|++++|+|+++..+++... ++..+.. .++|+++|+||+|+.+..........+.........++++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 568999999999999987777653 3333322 46899999999999754322222222221112223457899999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 029978 164 KNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~~ 182 (184)
++|.||+++++.+.+.+.+
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987753
No 143
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.92 E-value=2e-23 Score=145.50 Aligned_cols=156 Identities=21% Similarity=0.210 Sum_probs=112.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCC------------------CCccceeeEEeeCCEEEEEEeCCCcccchHhHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMI------------------PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~------------------~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (184)
+|+++|.+|+|||||++.+.+........ .+..............+.+|||||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999999765544331 222233334555678899999999998888888
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh----HHHHHcCCCCc-------
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE----DLMEQMGLKSI------- 151 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~----~~~~~~~~~~~------- 151 (184)
.+++.+|++++|+|+........ ...+..... .+.|+++|+||+|+....... ++.+.++....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 88999999999999987554322 222222222 579999999999998643322 23233322111
Q ss_pred --CCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 152 --TDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 152 --~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
.....+++++||++|.|++++++++.+.+.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 124568999999999999999999998775
No 144
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=1.1e-23 Score=150.48 Aligned_cols=163 Identities=25% Similarity=0.392 Sum_probs=123.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEe----eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.++|+++|++|+|||||++++.++.+...+.+|++..+.... ...+++.+|||+|++.++..+..+..++++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 489999999999999999999999999999988775554322 1257799999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHH-HHH----------cCCCCcC-CCceeEEEee
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDL-MEQ----------MGLKSIT-DREVCCYMIS 162 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~-~~~----------~~~~~~~-~~~~~~~~~S 162 (184)
+|..+..++.+....|..........+.|+++|+||+|+......... ... ....... .....++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 999996666666655554444433357999999999999876432111 111 0000001 1122389999
Q ss_pred eC--CCCCHHHHHHHHHHHhh
Q 029978 163 CK--NSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 163 a~--~~~~v~~l~~~i~~~~~ 181 (184)
++ .+.++++++..+...+.
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHH
Confidence 99 99999999999988774
No 145
>PLN00023 GTP-binding protein; Provisional
Probab=99.92 E-value=4.8e-24 Score=156.83 Aligned_cols=122 Identities=20% Similarity=0.365 Sum_probs=102.9
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEee---------------CCEEEEEEeCCCcccc
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTK---------------GNVTIKLWDLGGQPRF 77 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~---------------~~~~~~~~D~~g~~~~ 77 (184)
.....+||+++|+.|||||||++++.++.+...+.+|++.... .+.. ..+.+++|||+|++++
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 3445699999999999999999999999998888999886542 2221 3478999999999999
Q ss_pred hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-----------CCCCcEEEEeeCCCccCc
Q 029978 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-----------LNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~D~~~~ 136 (184)
..++..+++.++++|+|||+++.+++..+..|+..+..... ..++|++||+||+|+...
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 99999999999999999999999999999999888865421 135899999999999653
No 146
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.92 E-value=4.8e-24 Score=147.11 Aligned_cols=153 Identities=24% Similarity=0.233 Sum_probs=104.3
Q ss_pred EEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEeeC-CEEEEEEeCCCcccc-------hHhHHHhccCCCEEEE
Q 029978 24 LIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPRF-------RSMWERYCRAVSAIVY 93 (184)
Q Consensus 24 iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~-------~~~~~~~~~~~~~~i~ 93 (184)
++|++|||||||++++.+... ......|........... ...+.+|||||.... .......++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998754 222334444444444455 678999999996321 1123445678999999
Q ss_pred EEeCCCC------CChHHHHHHHHHHhcCCC------CCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEe
Q 029978 94 VVDAADY------DNLPVSRSELHDLLSKPS------LNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 94 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
|+|+.+. .++.....+...+..... ..++|+++|+||+|+.......+.. ..........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999987 456665555555543322 1479999999999997653323221 111112234469999
Q ss_pred eeCCCCCHHHHHHHHHHH
Q 029978 162 SCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~ 179 (184)
||+++.|++++++.+...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998765
No 147
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=4.2e-24 Score=142.73 Aligned_cols=134 Identities=20% Similarity=0.229 Sum_probs=91.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcc-----cchHhHHHhccCCCEEEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP-----RFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~~~i~v~ 95 (184)
||+++|++|+|||||++++.+..+. +.+|.+ .+... .+|||||+. .+.... ..++.+|++++|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-----~~~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~ 70 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-----VEYND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQ 70 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-----EEEcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEe
Confidence 7999999999999999999876542 233332 22222 689999973 223332 3478999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|++++.++... . +.... ..|+++|+||+|+.+.. ..++..+..... ...+++++||++|.|++++++
T Consensus 71 d~~~~~s~~~~-~-~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 71 SATDPESRFPP-G-FASIF------VKPVIGLVTKIDLAEADVDIERAKELLETA----GAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred cCCCCCcCCCh-h-HHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCCcEEEEecCCCCCHHHHHH
Confidence 99999887652 2 22221 24999999999986532 222222211110 122689999999999999999
Q ss_pred HHH
Q 029978 175 WLV 177 (184)
Q Consensus 175 ~i~ 177 (184)
.+.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 148
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=3e-23 Score=145.60 Aligned_cols=146 Identities=25% Similarity=0.330 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHc--CCCCCCC----------------CCCccceeeEEeeCCEEEEEEeCCCcccchHhH
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT--GGYSEDM----------------IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 81 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~--~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 81 (184)
.+|+++|.+++|||||++++++ +.+.... ..|.......+......+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999996 4443332 112222333466778899999999999999999
Q ss_pred HHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcC-CCC-cCCCce
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMG-LKS-ITDREV 156 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~-~~~-~~~~~~ 156 (184)
..+++.+|++++|+|+++.. ......++..... .++|+++|+||+|+..... .+++.+.+. ... .....+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998742 2222333333322 4689999999999965322 122222211 111 122355
Q ss_pred eEEEeeeCCCCCHH
Q 029978 157 CCYMISCKNSTNID 170 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~ 170 (184)
+++++||++|.|+.
T Consensus 158 ~iv~~Sa~~g~~~~ 171 (194)
T cd01891 158 PVLYASAKNGWASL 171 (194)
T ss_pred CEEEeehhcccccc
Confidence 79999999997763
No 149
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.9e-24 Score=136.97 Aligned_cols=171 Identities=33% Similarity=0.605 Sum_probs=150.1
Q ss_pred HhhccC-CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 12 RSLFFK-QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 12 ~~~~~~-~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
+.++.. .+.++.++|-.|+||||++.++.-++. ....||+++....+..++.++++||..|+...+..|+-|+...++
T Consensus 10 ~~L~g~e~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~a 88 (182)
T KOG0072|consen 10 KALQGPEREMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDA 88 (182)
T ss_pred HHhcCCccceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccce
Confidence 444554 789999999999999999998864433 345678888888888899999999999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+|.++.+.+.-....+..+++........++++.||.|........|+...+++...+++.+.++++||..|.|++
T Consensus 89 vIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 89 VIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 99999999999888777777888877777788899999999999888889999999998888888999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 029978 171 TVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
+.++|+.+-+++.
T Consensus 169 ~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 169 PAMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988764
No 150
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=5.2e-23 Score=155.40 Aligned_cols=151 Identities=23% Similarity=0.300 Sum_probs=107.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEee-CCEEEEEEeCCCccc---------chHhHHHhc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR---------FRSMWERYC 85 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~---------~~~~~~~~~ 85 (184)
..++|+++|.+|+|||||+|++++..+. ..+.+|.......+.. ....+.+|||+|..+ +... ...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~t-le~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRAT-LEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHH-HHHH
Confidence 3489999999999999999999987643 3345666665555554 456899999999721 2221 2246
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
..+|++++|+|++++.+......+ ..++......++|+++|+||+|+.+. +++..... ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~-~~~L~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAV-EKVLEELGAEDIPQLLVYNKIDLLDE---PRIERLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHH-HHHHHHhccCCCCEEEEEEeecCCCh---HhHHHHHh------CCCCEEEEEccC
Confidence 789999999999998776655433 33333333357899999999999654 22221111 113589999999
Q ss_pred CCCHHHHHHHHHHH
Q 029978 166 STNIDTVIDWLVKH 179 (184)
Q Consensus 166 ~~~v~~l~~~i~~~ 179 (184)
|.|++++++.|.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998765
No 151
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.91 E-value=3.8e-23 Score=160.99 Aligned_cols=147 Identities=18% Similarity=0.218 Sum_probs=108.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHh--------HHHhc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM--------WERYC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 85 (184)
+.+++|+++|.+|+|||||++++++... ...+..|.......+...+..+.+|||||...+... ....+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 5679999999999999999999997653 223334444444556667788999999998654321 23457
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+.+|++++|+|++++.++.... .+.. ..+.|+++|+||+|+.+..... .....+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~-~l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDE-ILEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHH-HHHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 8899999999999887665432 2222 2578999999999997542211 11234689999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 029978 166 STNIDTVIDWLVKHSK 181 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~ 181 (184)
|.|++++++++.+.+.
T Consensus 355 g~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 355 GEGIDELREAIKELAF 370 (449)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998765
No 152
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.91 E-value=3.8e-23 Score=144.31 Aligned_cols=158 Identities=25% Similarity=0.289 Sum_probs=112.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC--------------------CCCCCCccceeeEEe--eCCEEEEEEeCCCcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS--------------------EDMIPTVGFNMRKVT--KGNVTIKLWDLGGQP 75 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~--------------------~~~~~t~~~~~~~~~--~~~~~~~~~D~~g~~ 75 (184)
+-.+|+++|+.++|||||+++|+...-. .....|.......+. .....+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4578999999999999999999843211 113345555566666 788999999999999
Q ss_pred cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC-----CCC
Q 029978 76 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG-----LKS 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~-----~~~ 150 (184)
++.......+..+|++++|+|+.+.-. .........+.. .++|+++|+||+|+... ..++..+++. ...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~--~~~~~~l~~~~~---~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQ--PQTEEHLKILRE---LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBST--HHHHHHHHHHHH---TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeecccccc--cccccccccccc---cccceEEeeeeccchhh-hHHHHHHHHHHHhccccc
Confidence 999888888999999999999986532 222222222222 47899999999999832 2222222221 111
Q ss_pred cCC-CceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 151 ITD-REVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 151 ~~~-~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
... ..++++++||++|.|+++|++.+.+++.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 122 4678999999999999999999998874
No 153
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=2.8e-23 Score=145.49 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC----CCC-----CCCCCCccceeeEEee--------------CCEEEEEEeCCCccc
Q 029978 20 MELSLIGLQNAGKTSLVNVIATG----GYS-----EDMIPTVGFNMRKVTK--------------GNVTIKLWDLGGQPR 76 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~----~~~-----~~~~~t~~~~~~~~~~--------------~~~~~~~~D~~g~~~ 76 (184)
++|+++|++++|||||++++... .+. .....|.+.....+.. ....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 57999999999999999999862 111 1123344433332222 267899999999977
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh----HHHHHcCCC--C
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE----DLMEQMGLK--S 150 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~----~~~~~~~~~--~ 150 (184)
+........+.+|++++|+|+++.........+ . +... .+.|+++|+||+|+......+ +..+.++.. .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~-~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECL-V-IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHH-H-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 655555556778999999999875433332211 1 1221 257999999999997533222 222211100 0
Q ss_pred cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 151 ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
......+++++||++|.|+++|++++.+.+.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1123457999999999999999999987654
No 154
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=7.8e-23 Score=159.45 Aligned_cols=159 Identities=19% Similarity=0.154 Sum_probs=109.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchH-----------hHHHh
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS-----------MWERY 84 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~~ 84 (184)
.++|+++|.+|+|||||++++++... ......|.......+...+..+.+|||||..+... .....
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~ 251 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKA 251 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999997653 22233343333344455566899999999654321 12346
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc-CcCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP-EALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++.+|++++|+|+++..+.+... .+..+.. .+.|+++|+||+|+. +....++..+.+.........++++++||
T Consensus 252 ~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA 326 (429)
T TIGR03594 252 IERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISA 326 (429)
T ss_pred HHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeC
Confidence 78899999999999866554432 2222222 468999999999997 32223344444433222334568999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 029978 164 KNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~~ 182 (184)
++|.|++++++.+.+...+
T Consensus 327 ~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 327 LTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887653
No 155
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.91 E-value=5.5e-26 Score=150.69 Aligned_cols=159 Identities=23% Similarity=0.355 Sum_probs=132.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+|++|+|..++||||++++++.+.|..++..|++.++.. +...+.++.+|||+|++.+......+++++++.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 346999999999999999999999999999999999977653 5556678899999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+||+-+++.+|.....|...+.... .++|.++|-||+|+.+.. ...++...... ....++.+|++...||.
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~-----l~~RlyRtSvked~NV~ 170 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKK-----LHKRLYRTSVKEDFNVM 170 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHH-----hhhhhhhhhhhhhhhhH
Confidence 9999999999999999998886543 489999999999997653 22233222221 12247889999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
.+|.++...+.+
T Consensus 171 ~vF~YLaeK~~q 182 (246)
T KOG4252|consen 171 HVFAYLAEKLTQ 182 (246)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 156
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.91 E-value=1.7e-23 Score=133.74 Aligned_cols=176 Identities=28% Similarity=0.516 Sum_probs=153.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeC-CEEEEEEeCCCcccchHhHH
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~ 82 (184)
|+.++.-.++.. .++++++++|-.++||||++..+. ++.+....||.++....+... .+++++||.+|+...+..|.
T Consensus 3 l~til~~~ks~t-~rEirilllGldnAGKTT~LKqL~-sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWs 80 (185)
T KOG0074|consen 3 LETILCCCKSRT-RREIRILLLGLDNAGKTTFLKQLK-SEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWS 80 (185)
T ss_pred HHHHHHHhcCCC-cceEEEEEEecCCCcchhHHHHHc-cCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhh
Confidence 555555554443 788999999999999999999885 566777889999988887654 49999999999999999999
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEee
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.|+...|.+|+|+|.++...|.++-..+.+++...+...+|+.+..||.|+.-....+++...+.+.....+.+++-+||
T Consensus 81 NYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~cs 160 (185)
T KOG0074|consen 81 NYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECS 160 (185)
T ss_pred hhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCc
Confidence 99999999999999999988998888888998888888999999999999988778899999998888888888999999
Q ss_pred eCCCCCHHHHHHHHHHHhh
Q 029978 163 CKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~ 181 (184)
|.++.|+.+-.+++.+..+
T Consensus 161 als~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 161 ALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred cccccCccCcchhhhcCCC
Confidence 9999999999988876544
No 157
>PTZ00099 rab6; Provisional
Probab=99.91 E-value=4e-24 Score=147.40 Aligned_cols=135 Identities=22% Similarity=0.400 Sum_probs=106.6
Q ss_pred CCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCC
Q 029978 42 GGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP 117 (184)
Q Consensus 42 ~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 117 (184)
+.|...+.+|++..+.. ++...+.+.+|||+|++++...+..+++.+|++++|||++++++|..+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 46778888999866642 33456899999999999999999999999999999999999999999988888776543
Q ss_pred CCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 118 SLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 118 ~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
. .+.|+++|+||+|+.... ..++...... .....+++|||++|.||+++|++|.+.+.+
T Consensus 83 ~-~~~piilVgNK~DL~~~~~v~~~e~~~~~~-----~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 G-KDVIIALVGNKTDLGDLRKVTYEEGMQKAQ-----EYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred C-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2 578999999999996432 2233322211 123468999999999999999999988764
No 158
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=1.7e-22 Score=156.60 Aligned_cols=153 Identities=22% Similarity=0.240 Sum_probs=107.3
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCCC--CCC-CCCCccceeeEEeeCCEEEEEEeCCCcccchH--------hHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGY--SED-MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS--------MWE 82 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~~--~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~ 82 (184)
...+.+++|+++|++|+|||||++++++... ... +..|.......+...+..+.+|||||...... ...
T Consensus 198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 3446789999999999999999999997643 222 22233333344556678899999999855432 123
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEee
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.+++.+|++++|+|++++.++... ++..+. ..++|+++|+||+|+... ..++..+. ...+++++|
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV~NK~Dl~~~-~~~~~~~~--------~~~~~~~vS 342 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILVLNKIDLKIN-SLEFFVSS--------KVLNSSNLS 342 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEEEECccCCCc-chhhhhhh--------cCCceEEEE
Confidence 567899999999999988776553 444332 246899999999999643 22222111 123588999
Q ss_pred eCCCCCHHHHHHHHHHHhhh
Q 029978 163 CKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~ 182 (184)
|++ .||+++++.+.+.+.+
T Consensus 343 ak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 343 AKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred Eec-CCHHHHHHHHHHHHHH
Confidence 998 6999999988887653
No 159
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=5.5e-23 Score=154.02 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=110.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCC-EEEEEEeCCCccc-------chHhHHHhccCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPR-------FRSMWERYCRAVS 89 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~~ 89 (184)
..|+++|.++||||||++++.+.... ..+.+|.......+...+ ..+.+||+||... ........+..++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 56899999999999999999975432 222345444444455444 7899999999642 1223334456799
Q ss_pred EEEEEEeCCCC---CChHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 90 AIVYVVDAADY---DNLPVSRSELHDLLSKP-SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 90 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++++|+|+++. +++.....+..++.... ...+.|+++|+||+|+.+....++..+.+... ...+++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~----~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKA----LGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHH----cCCcEEEEEccC
Confidence 99999999986 56666666666554432 22578999999999997653333333333211 124699999999
Q ss_pred CCCHHHHHHHHHHHh
Q 029978 166 STNIDTVIDWLVKHS 180 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~ 180 (184)
+.|++++++.+.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998865
No 160
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.91 E-value=2.3e-23 Score=147.03 Aligned_cols=160 Identities=17% Similarity=0.163 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---C--CCCCCCccceeeEEee---------------------------------
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY---S--EDMIPTVGFNMRKVTK--------------------------------- 61 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~---~--~~~~~t~~~~~~~~~~--------------------------------- 61 (184)
++|+++|+.|+|||||+..+.+-.. + .....|....+....+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4789999999999999999974311 1 1111122211111111
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 141 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 141 (184)
....+.+|||||++.+.......+..+|++++|+|++++.........+..+... ...|+++|+||+|+.......+
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 1268999999999998888888888999999999998742111212222222111 1247999999999975322222
Q ss_pred HHHHcCC--CCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 142 LMEQMGL--KSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 142 ~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
..+.+.. ........+++++||++|.|++++++.+.+.+.+
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 2222211 1111234579999999999999999999987754
No 161
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1e-22 Score=159.92 Aligned_cols=153 Identities=19% Similarity=0.180 Sum_probs=104.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCccc--------chHhHHHhcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCR 86 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 86 (184)
...+|+|+|.+|||||||++++++.... ..+..|...........+..+.+|||||.+. +......+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 3468999999999999999999976532 2222233333344556677899999999762 3334556788
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.+|++++|+|+++..+... ..+..++.. .++|+++|+||+|+..... +..+..... .. ..+++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g----~~-~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSLG----LG-EPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhcC----CC-CeEEEEcCCC
Confidence 9999999999998765432 223333332 4799999999999864321 111111111 11 2468999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.|++++++.+.+.+.+
T Consensus 185 ~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 185 RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcHHHHHHHHhhccc
Confidence 9999999999987753
No 162
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=1.8e-23 Score=140.12 Aligned_cols=150 Identities=28% Similarity=0.461 Sum_probs=111.6
Q ss_pred EEcCCCCChHHHHHHHHcCCC-CCCCCCCccceeeEEee----CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCC
Q 029978 24 LIGLQNAGKTSLVNVIATGGY-SEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 24 iiG~~g~GKStli~~l~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
++|++|+|||||++++.+... .....+|. ........ ....+.+||+||+..+.......++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 45555555 43333222 3678999999999888877788889999999999999
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHH-HHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHH
Q 029978 99 DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLM-EQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 177 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
+..+......++..........++|+++|+||+|+......+... ... .......+++++|++++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQ---LAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHH---HHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 987777776663333334445789999999999997664433321 111 1112345799999999999999999875
No 163
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=1e-22 Score=137.86 Aligned_cols=145 Identities=20% Similarity=0.200 Sum_probs=99.5
Q ss_pred EEEcCCCCChHHHHHHHHcCCC--C-CCCCCCccceeeEEeeCCEEEEEEeCCCcccchH--------hHHHhccCCCEE
Q 029978 23 SLIGLQNAGKTSLVNVIATGGY--S-EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS--------MWERYCRAVSAI 91 (184)
Q Consensus 23 ~iiG~~g~GKStli~~l~~~~~--~-~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~~~ 91 (184)
+++|.+|+|||||++++.+... . .....|...........+..+.+|||||...+.. .....++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4799999999999999997642 1 2222233344444556678899999999876433 344567889999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|+|..+..+... ..+..++.. .+.|+++|+||+|+.+.....+....++ ..+++++|++++.|+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLG-------FGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcC-------CCCeEEEecccCCCHHH
Confidence 99999987543332 223333322 3599999999999976532211111111 11478999999999999
Q ss_pred HHHHHHHH
Q 029978 172 VIDWLVKH 179 (184)
Q Consensus 172 l~~~i~~~ 179 (184)
+++++.+.
T Consensus 149 l~~~l~~~ 156 (157)
T cd01894 149 LLDAILEL 156 (157)
T ss_pred HHHHHHhh
Confidence 99999875
No 164
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=4.7e-22 Score=136.60 Aligned_cols=156 Identities=19% Similarity=0.120 Sum_probs=103.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccch-----------HhHHHh
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR-----------SMWERY 84 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-----------~~~~~~ 84 (184)
.++|+++|++|+|||||++++.+.... .....+..............+.+|||||..... ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 578999999999999999999876532 112222222223344455678999999964321 112234
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--CCHhHHHHHcCCCCcCCCceeEEEee
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
++.+|++++|+|+.++.+.... ..+..+.. .+.|+++++||+|+.+. ...++..+.+..........+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 6789999999999987665432 22222221 36899999999999765 23333333333222222345799999
Q ss_pred eCCCCCHHHHHHHHHHH
Q 029978 163 CKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~ 179 (184)
|+++.|++++++.+.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 165
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.90 E-value=8.2e-23 Score=143.49 Aligned_cols=163 Identities=20% Similarity=0.253 Sum_probs=104.7
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEeeCCEEEEEEeCCCcc----------cchHhHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGGQP----------RFRSMWE 82 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g~~----------~~~~~~~ 82 (184)
.+.+...+|+++|++|+|||||++++.+..+.....++.+.... .....+..+.+|||||.. .+.....
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 34455689999999999999999999987655555555442221 111224689999999942 2333344
Q ss_pred HhccC---CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEE
Q 029978 83 RYCRA---VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCY 159 (184)
Q Consensus 83 ~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+++. .+++++++|.+...... ..+....+.. .++|+++++||+|+.+....++..+.+...... ...+++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~--~~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~-~~~~~~ 172 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKEL--DLQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKF-GDDEVI 172 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHH--HHHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh-cCCceE
Confidence 44443 46788888887644322 2222223222 468999999999997643333322222111111 134689
Q ss_pred EeeeCCCCCHHHHHHHHHHHhhh
Q 029978 160 MISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
++||+++.|++++++.|.+++++
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999988865
No 166
>COG1159 Era GTPase [General function prediction only]
Probab=99.90 E-value=7.3e-23 Score=146.98 Aligned_cols=157 Identities=22% Similarity=0.194 Sum_probs=114.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccc--------hHhHHHhcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF--------RSMWERYCR 86 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~ 86 (184)
+.-.|+|+|.||+|||||+|++.+... ++.++.|.......+..++..+.++||||.... .......+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 445689999999999999999998654 566667776666667778899999999995432 223455678
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+|++++|+|++.... ....+..+.+.. .+.|+++++||+|...... .....+.+.... .+..++++||++
T Consensus 85 dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~---~f~~ivpiSA~~ 156 (298)
T COG1159 85 DVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL---PFKEIVPISALK 156 (298)
T ss_pred cCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhC---CcceEEEeeccc
Confidence 9999999999987432 223333333222 4689999999999987644 233333333222 233699999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 029978 166 STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~~ 182 (184)
|.|++.|.+.+..++.+
T Consensus 157 g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 157 GDNVDTLLEIIKEYLPE 173 (298)
T ss_pred cCCHHHHHHHHHHhCCC
Confidence 99999999999998764
No 167
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=1.5e-22 Score=137.36 Aligned_cols=147 Identities=24% Similarity=0.248 Sum_probs=100.4
Q ss_pred EEcCCCCChHHHHHHHHcCCCCCCC--CCCccceeeEEeeCCEEEEEEeCCCcccchH------hHHHhc--cCCCEEEE
Q 029978 24 LIGLQNAGKTSLVNVIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYC--RAVSAIVY 93 (184)
Q Consensus 24 iiG~~g~GKStli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~~~~i~ 93 (184)
++|.+|+|||||++++.+..+.... ..|.......+...+..+.+|||||+..+.. ....++ ..+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999977544332 2344444444555567899999999876542 344555 48999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|+.+.+... .++..+.. .++|+++|+||+|+.+........+.+.. ....+++++||+++.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSE----LLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHH----hhCCCeEEEEccCCCCHHHHH
Confidence 99998754322 23333322 36899999999999764322211111111 112469999999999999999
Q ss_pred HHHHHHhh
Q 029978 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
+.+.+++.
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988754
No 168
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.90 E-value=1.5e-22 Score=137.38 Aligned_cols=142 Identities=19% Similarity=0.247 Sum_probs=93.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcc----cchHhHHHhccCCCEEEEEEe
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP----RFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i~v~d 96 (184)
+|+++|.+|+|||||++++.+. +.. ..+|... .+... .+|||||.. ++.......++.+|++++|+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~-~~~-~~~~~~v---~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d 73 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGN-YTL-ARKTQAV---EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHG 73 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCC-Ccc-CccceEE---EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEe
Confidence 7999999999999999998743 211 1122111 11111 269999973 222222344789999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++.+++.. .+...+ ..+.|+++++||+|+.+. ..++..+.+... ....+++++||+++.|++++++.+
T Consensus 74 ~~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 74 ANDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLET---GFEEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred CCCcccccC--HHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHHHHH
Confidence 998776532 233332 135799999999998653 333333322111 112479999999999999999999
Q ss_pred HHHhhh
Q 029978 177 VKHSKS 182 (184)
Q Consensus 177 ~~~~~~ 182 (184)
.+.+.+
T Consensus 143 ~~~~~~ 148 (158)
T PRK15467 143 ASLTKQ 148 (158)
T ss_pred HHhchh
Confidence 988753
No 169
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=3e-22 Score=155.63 Aligned_cols=160 Identities=22% Similarity=0.249 Sum_probs=109.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCCEEEEEEeCCCcccc-------hHhHHHhccCCC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVS 89 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~~ 89 (184)
-..|+|+|.||||||||++++.+.... ..+.+|.......+...+..+.+||+||.... .......+..++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 367999999999999999999865432 23455666666667777789999999995321 122334567799
Q ss_pred EEEEEEeCCCC----CChHHHHHHHHHHhcCC----------CCCCCcEEEEeeCCCccCcCCHhHH-HHHcCCCCcCCC
Q 029978 90 AIVYVVDAADY----DNLPVSRSELHDLLSKP----------SLNGIPLLVLGNKIDKPEALSKEDL-MEQMGLKSITDR 154 (184)
Q Consensus 90 ~~i~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~piilv~nK~D~~~~~~~~~~-~~~~~~~~~~~~ 154 (184)
++++|+|+++. +.+.....+..++..+. ...+.|+++|+||+|+.+.....+. .+.+. ..
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~-----~~ 313 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE-----AR 313 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH-----Hc
Confidence 99999999753 34444443333443322 2357899999999999754222221 11211 12
Q ss_pred ceeEEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 155 EVCCYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
.++++++||+++.|+++|++++.+.+...
T Consensus 314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 314 GWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 34799999999999999999999887653
No 170
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=9.3e-22 Score=151.06 Aligned_cols=155 Identities=22% Similarity=0.276 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeC-CEEEEEEeCCCccc----c---hHhHHHhccCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPR----F---RSMWERYCRAVS 89 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~----~---~~~~~~~~~~~~ 89 (184)
..|+++|.|+||||||++++++.... ..+..|.......+... ...+.+||+||... . .......+..++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 37999999999999999999965432 22344544444444444 57899999999632 1 122334456799
Q ss_pred EEEEEEeCCCC---CChHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 90 AIVYVVDAADY---DNLPVSRSELHDLLSKP-SLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 90 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++++|+|+++. +++.....+..++..+. ...++|+++|+||+|+..... .+++.+.+. .+++++||+
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~ 310 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISAL 310 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCC
Confidence 99999999864 56666655555554432 225789999999999843311 112222222 368999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 029978 165 NSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~~ 182 (184)
++.|++++++++.+.+.+
T Consensus 311 tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 311 TGQGLDELLYAVAELLEE 328 (424)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 171
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=1e-21 Score=157.13 Aligned_cols=153 Identities=22% Similarity=0.286 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC-------CCCCCCC----------CccceeeEEe-----eCCEEEEEEeCCCcccc
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGG-------YSEDMIP----------TVGFNMRKVT-----KGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~-------~~~~~~~----------t~~~~~~~~~-----~~~~~~~~~D~~g~~~~ 77 (184)
-+++++|+.++|||||+++++... +...+.+ |+......+. ...+.+++|||||+.++
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 478999999999999999998532 2222222 2222222222 23488999999999999
Q ss_pred hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH---hHHHHHcCCCCcCCC
Q 029978 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---EDLMEQMGLKSITDR 154 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~ 154 (184)
...+..+++.+|++++|+|+++....+....++... . .++|+++|+||+|+...... +++.+.++..
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~----- 153 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD----- 153 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC-----
Confidence 999999999999999999999876666555444332 2 36899999999998653211 2232332221
Q ss_pred ceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 155 EVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
..+++++||++|.|++++++.|.+.+..
T Consensus 154 ~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 154 ASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 1248999999999999999999987653
No 172
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.89 E-value=2.3e-22 Score=134.42 Aligned_cols=142 Identities=27% Similarity=0.355 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCCEEEEEEeCCCcccc------hHhHHHhc--cCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF------RSMWERYC--RAVS 89 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~--~~~~ 89 (184)
++|+++|.||+|||||+|++++.... .-++.|+......+...+..+.++|+||.... ......++ ...|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 58999999999999999999987643 33455666666667778899999999994322 22233333 6899
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC----CHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++++|+|+++.+ .......++.. .++|+++|+||+|..... +.+.+.+.++. |++++||++
T Consensus 81 ~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~--------pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV--------PVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS---------EEEEBTTT
T ss_pred EEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC--------CEEEEEeCC
Confidence 999999998632 22222233332 479999999999987643 34566666553 699999999
Q ss_pred CCCHHHHHHHH
Q 029978 166 STNIDTVIDWL 176 (184)
Q Consensus 166 ~~~v~~l~~~i 176 (184)
+.|+++|++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
No 173
>PRK00089 era GTPase Era; Reviewed
Probab=99.89 E-value=8.4e-22 Score=146.41 Aligned_cols=156 Identities=21% Similarity=0.197 Sum_probs=104.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccch--------HhHHHhcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR--------SMWERYCR 86 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~ 86 (184)
+.-.|+++|++|||||||+|++++.... ..+..|..........++..+.++||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 3456899999999999999999976542 222223222222233455789999999964322 23344568
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc-CCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA-LSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+|++++|+|+++. +.....+....+.. .+.|+++|+||+|+... ....+..+.+... ....+++++||++
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCC
Confidence 89999999999872 23333333333332 46899999999999732 2222333333221 1245699999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 029978 166 STNIDTVIDWLVKHSK 181 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~ 181 (184)
+.|++++++.+.+.+.
T Consensus 156 ~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 156 GDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCHHHHHHHHHHhCC
Confidence 9999999999998764
No 174
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=1.2e-21 Score=160.32 Aligned_cols=159 Identities=16% Similarity=0.092 Sum_probs=110.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCccc----------chHh-HHHh
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR----------FRSM-WERY 84 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~-~~~~ 84 (184)
..+|+++|.+|||||||++++++... ......|.......+...+..+.+|||||..+ +... ....
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~ 529 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAA 529 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHH
Confidence 48999999999999999999998763 22233344433334445566788999999532 1111 1234
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++.+|++++|+|+++..+.+... .+..+.. .++|+++|+||+|+.+....+...+.+..........+++++||+
T Consensus 530 i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAk 604 (712)
T PRK09518 530 IERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAK 604 (712)
T ss_pred hhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence 68899999999999887766543 3333322 468999999999997643333333333322222234578999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 029978 165 NSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~~ 182 (184)
+|.|++++++.+.+...+
T Consensus 605 tg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 605 TGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988764
No 175
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.89 E-value=4.4e-22 Score=158.64 Aligned_cols=156 Identities=24% Similarity=0.320 Sum_probs=109.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEeeCCE-EEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNV-TIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+..+|+++|++++|||||++++.+..+.....+ |.......+...+. .+.+|||||++.|..++.+.+..+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4568899999999999999999998776554332 33333333444333 89999999999999988888999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHc---CCCC-cCCCceeEEEeeeCCCCCH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM---GLKS-ITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~Sa~~~~~v 169 (184)
|+|+++...-+.. ..+. .....++|+++++||+|+... ..+++.+.+ +... ......+++++||++|.|+
T Consensus 165 VVda~dgv~~qT~-e~i~----~~~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVMPQTI-EAIS----HAKAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCCHhHH-HHHH----HHHHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 9999864322221 1122 122257899999999999653 233333332 2111 1122357999999999999
Q ss_pred HHHHHHHHH
Q 029978 170 DTVIDWLVK 178 (184)
Q Consensus 170 ~~l~~~i~~ 178 (184)
+++++.+..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999864
No 176
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.89 E-value=1.7e-21 Score=137.33 Aligned_cols=157 Identities=27% Similarity=0.369 Sum_probs=111.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEe----eCCEEEEEEeCCCcccchHhHHHhccCC-CEEEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAV-SAIVYVV 95 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~-~~~i~v~ 95 (184)
+|+++|++|||||||+++|..+.+...+.++.. ...... .....+.+||+||+++++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~-~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEP-NVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEee-cceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999998877665544322 222221 2357899999999999998888889998 9999999
Q ss_pred eCCCC-CChHHHHHHHHHHhcC--CCCCCCcEEEEeeCCCccCcCCHhHHHHHcC-------------C-----------
Q 029978 96 DAADY-DNLPVSRSELHDLLSK--PSLNGIPLLVLGNKIDKPEALSKEDLMEQMG-------------L----------- 148 (184)
Q Consensus 96 d~~~~-~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~~~~~~~~~-------------~----------- 148 (184)
|+.+. .++.....++..++.. ....++|+++|+||+|+......+.+.+.+. +
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~ 160 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE 160 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99987 5666666666555432 1225899999999999876543222211110 0
Q ss_pred ----------CCc-CCCceeEEEeeeCCCC-CHHHHHHHHHH
Q 029978 149 ----------KSI-TDREVCCYMISCKNST-NIDTVIDWLVK 178 (184)
Q Consensus 149 ----------~~~-~~~~~~~~~~Sa~~~~-~v~~l~~~i~~ 178 (184)
... ....+.+.++|++.+. |++.+.++|.+
T Consensus 161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 000 0125678899999876 69999988864
No 177
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=1.7e-21 Score=151.98 Aligned_cols=149 Identities=21% Similarity=0.253 Sum_probs=105.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCc--------ccchHhHHHhccCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ--------PRFRSMWERYCRAVS 89 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~~~ 89 (184)
+|+++|.+|||||||++++.+.... ..+..|...........+..+.+|||||. +.+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 4899999999999999999976531 22333444455556677788999999996 334455666788999
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++++|+|+.+... .....+..+++. .++|+++|+||+|+............++ ..+++++||++|.|+
T Consensus 81 ~vl~vvD~~~~~~--~~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg-------~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLT--PEDEEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLG-------FGEPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCC--HHHHHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcC-------CCCeEEEeCCcCCCh
Confidence 9999999987433 222233333332 4689999999999875432111111222 124899999999999
Q ss_pred HHHHHHHHHHhh
Q 029978 170 DTVIDWLVKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~~~ 181 (184)
+++++.+.+.+.
T Consensus 149 ~~ll~~i~~~l~ 160 (429)
T TIGR03594 149 GDLLDAILELLP 160 (429)
T ss_pred HHHHHHHHHhcC
Confidence 999999998764
No 178
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=2e-21 Score=151.82 Aligned_cols=148 Identities=22% Similarity=0.254 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCccc--------chHhHHHhccCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCRAV 88 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~ 88 (184)
.+|+++|.+|||||||++++.+... ...+..|...........+..+.+|||||.+. +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 4799999999999999999997653 22233344444455566678999999999876 233345567899
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|+.+..+. .......++.. .+.|+++|+||+|+.+.. +...+...+. ...++++||++|.|
T Consensus 82 d~il~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~lg-----~~~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLTP--ADEEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYSLG-----LGEPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCCH--HHHHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHhcC-----CCCCEEEEeeCCCC
Confidence 999999999874332 22222333322 368999999999975421 2222221111 11378999999999
Q ss_pred HHHHHHHHHHH
Q 029978 169 IDTVIDWLVKH 179 (184)
Q Consensus 169 v~~l~~~i~~~ 179 (184)
++++++.+.+.
T Consensus 150 v~~l~~~I~~~ 160 (435)
T PRK00093 150 IGDLLDAILEE 160 (435)
T ss_pred HHHHHHHHHhh
Confidence 99999999873
No 179
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=1.8e-21 Score=132.78 Aligned_cols=153 Identities=22% Similarity=0.204 Sum_probs=102.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCC---CCCCccceeeEEeeCCEEEEEEeCCCcccch--------HhHHHhccC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR--------SMWERYCRA 87 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~~ 87 (184)
..+|+++|++|+|||||++++.+...... ...+..............+.+|||||..... ......+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999987653211 1112212222344556789999999965432 233455788
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC-cCCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE-ALSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+|++++|+|++++. .....++...... .+.|+++|+||+|+.. .....+..+.+... ....+++++|++++
T Consensus 83 ~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~ 154 (168)
T cd04163 83 VDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALKG 154 (168)
T ss_pred CCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEeccC
Confidence 99999999999862 2222233232222 2689999999999973 32333333333222 22346899999999
Q ss_pred CCHHHHHHHHHHH
Q 029978 167 TNIDTVIDWLVKH 179 (184)
Q Consensus 167 ~~v~~l~~~i~~~ 179 (184)
.|++++++.|.+.
T Consensus 155 ~~~~~l~~~l~~~ 167 (168)
T cd04163 155 ENVDELLEEIVKY 167 (168)
T ss_pred CChHHHHHHHHhh
Confidence 9999999999765
No 180
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=2.1e-21 Score=151.69 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=108.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCC-C--CCCCCCccceeeEEeeCCEEEEEEeCCCcccch-----------HhHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGY-S--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR-----------SMWER 83 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-----------~~~~~ 83 (184)
..++|+++|.+|+|||||++++++... . .....|.......+...+..+.+|||||..+.. .....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 469999999999999999999996542 1 222223322223344566789999999964321 11234
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
.++.+|++++|+|+++..+.+.. ..+..+.. .+.|+++|+||+|+.+....++..+.+.........++++++||
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDL-RIAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 57889999999999987655443 22222222 46899999999999754333444444433222334568999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
++|.|++++++.+.+...
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887654
No 181
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=4.3e-21 Score=148.13 Aligned_cols=154 Identities=22% Similarity=0.273 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCC-EEEEEEeCCCcccc--hHhH------HHhccCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRF--RSMW------ERYCRAV 88 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~--~~~~------~~~~~~~ 88 (184)
.+|+++|.+|+|||||+|++++.... ..+..|.......+...+ ..+.+|||+|..+. ...+ ....+.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 58999999999999999999976543 234455555554554444 37889999997431 2222 2336789
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|++++.++.....+ ..++......++|+++|+||+|+.+... ... ..... ....++++||++|.|
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v-~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~-~~~~~-----~~~~~v~ISAktG~G 349 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAV-NTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRI-DRDEE-----NKPIRVWLSAQTGAG 349 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHH-HHHHHHhccCCCCEEEEEEcccCCCchh-HHH-HHHhc-----CCCceEEEeCCCCCC
Confidence 999999999998766665332 2222222335789999999999964311 111 11100 011258899999999
Q ss_pred HHHHHHHHHHHhh
Q 029978 169 IDTVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~~~ 181 (184)
++++++.|.+.+.
T Consensus 350 IdeL~e~I~~~l~ 362 (426)
T PRK11058 350 IPLLFQALTERLS 362 (426)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998874
No 182
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.88 E-value=6.9e-22 Score=136.98 Aligned_cols=150 Identities=21% Similarity=0.278 Sum_probs=95.2
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eEEeeCCEEEEEEeCCCcc----------cchH
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQP----------RFRS 79 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~----------~~~~ 79 (184)
..++..+..+|+++|++|+|||||++++.+..+.....++.+... ..+... -.+.+|||||.. .+..
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHH
Confidence 345567789999999999999999999998764444444433221 112222 268999999942 2233
Q ss_pred hHHHhcc---CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH----hHHHHHcCCCCcC
Q 029978 80 MWERYCR---AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK----EDLMEQMGLKSIT 152 (184)
Q Consensus 80 ~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~~~~~~ 152 (184)
....+++ .++++++|+|+++.-+.... .+..++.. .++|+++|+||+|+...... +++.+.++..
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~--- 161 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD--- 161 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---
Confidence 3334444 35799999999875433332 22233322 46899999999999754322 2232333221
Q ss_pred CCceeEEEeeeCCCCCHH
Q 029978 153 DREVCCYMISCKNSTNID 170 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~ 170 (184)
....+++++||++|.|++
T Consensus 162 ~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCceEEEECCCCCCCC
Confidence 123469999999999974
No 183
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.88 E-value=1.5e-21 Score=131.94 Aligned_cols=152 Identities=24% Similarity=0.206 Sum_probs=103.9
Q ss_pred EEcCCCCChHHHHHHHHcCCCC-CCCC--CCccceeeEEeeC-CEEEEEEeCCCcccch-------HhHHHhccCCCEEE
Q 029978 24 LIGLQNAGKTSLVNVIATGGYS-EDMI--PTVGFNMRKVTKG-NVTIKLWDLGGQPRFR-------SMWERYCRAVSAIV 92 (184)
Q Consensus 24 iiG~~g~GKStli~~l~~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~-------~~~~~~~~~~~~~i 92 (184)
++|++|+|||||++++.+.... .... .+........... ...+.+||+||..... ......++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999875443 1111 1222222222322 5689999999976543 34455778999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+++|..+........ +.... ...+.|+++|+||+|+.......+..+...........++++++||+++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999877655543 12222 2257999999999999876544443321222233345668999999999999999
Q ss_pred HHHHHHHh
Q 029978 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
++.+.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
No 184
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=1.4e-21 Score=159.28 Aligned_cols=158 Identities=23% Similarity=0.321 Sum_probs=111.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+...|+++|+.++|||||+++|.+..+.....+ |.......+...+..+.+|||||++.|..++.+.++.+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 35668899999999999999999987665433222 3333334455567889999999999999999888999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHc---CCC-CcCCCceeEEEeeeCCCCCH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM---GLK-SITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~Sa~~~~~v 169 (184)
|+|+++...-+. ...+. .....++|+|+|+||+|+... +.+++...+ +.. ......++++++||++|.|+
T Consensus 367 VVdAddGv~~qT-~e~i~----~a~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVMPQT-IEAIN----HAKAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCCHhH-HHHHH----HHHhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999987432111 11122 222357999999999999653 223333322 111 11122468999999999999
Q ss_pred HHHHHHHHHH
Q 029978 170 DTVIDWLVKH 179 (184)
Q Consensus 170 ~~l~~~i~~~ 179 (184)
+++++.|...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998753
No 185
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=2.3e-21 Score=146.42 Aligned_cols=149 Identities=20% Similarity=0.214 Sum_probs=112.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccc---------hHhHHHhccC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF---------RSMWERYCRA 87 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~ 87 (184)
..|+|+|.||||||||.|+|++... ...++-|....+....+.+..+.++||+|-+.. ..+....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 5699999999999999999997654 456677777888888888889999999995521 2345556789
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
||+++||+|... ......+....++.. .++|+++|+||+|....+........+++. ..+++||.+|.
T Consensus 84 ADvilfvVD~~~--Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~~~~efyslG~g-------~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGRE--GITPADEEIAKILRR---SKKPVILVVNKIDNLKAEELAYEFYSLGFG-------EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCC--CCCHHHHHHHHHHHh---cCCCEEEEEEcccCchhhhhHHHHHhcCCC-------CceEeehhhcc
Confidence 999999999976 334444455555443 569999999999987442222222233333 48999999999
Q ss_pred CHHHHHHHHHHHh
Q 029978 168 NIDTVIDWLVKHS 180 (184)
Q Consensus 168 ~v~~l~~~i~~~~ 180 (184)
|+.+|++.+++.+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999986
No 186
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=1.6e-21 Score=155.91 Aligned_cols=158 Identities=20% Similarity=0.177 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC---CCCCCC--CCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATG---GYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~---~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.|+++|++++|||||+++|.+. .++.+. ..|+...+..+...+..+.+||+||+++|.......+..+|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 46899999999999999999852 333332 3344444445566668999999999999988888888999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCCHhHHHHHcCC---CCcCCCceeEEEeeeCCCCCHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALSKEDLMEQMGL---KSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+++... ......+ .++.. .++| +++|+||+|+.+....++..+++.. .......++++++||++|.|++
T Consensus 81 VDa~~G~~-~qT~ehl-~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 81 VDADEGVM-TQTGEHL-AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EECCCCCc-HHHHHHH-HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 99987421 1111222 22222 3577 9999999999764322222221110 0001124679999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++.+.+.+..
T Consensus 156 eL~~~L~~l~~~ 167 (581)
T TIGR00475 156 ELKKELKNLLES 167 (581)
T ss_pred hHHHHHHHHHHh
Confidence 999998877653
No 187
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=6.4e-21 Score=145.65 Aligned_cols=160 Identities=18% Similarity=0.202 Sum_probs=108.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEeeCC-EEEEEEeCCCcccc-------hHhHHHhccCCCE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRF-------RSMWERYCRAVSA 90 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~~~ 90 (184)
.|+|+|.||||||||++++++... ...+..|.......+...+ ..+.++||||.... .......+..+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 689999999999999999996543 2334455555555555554 46999999996431 1222345788999
Q ss_pred EEEEEeCC---CCCChHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 91 IVYVVDAA---DYDNLPVSRSELHDLLSKP-SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 91 ~i~v~d~~---~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+++|+|++ ..+.+.....+..++.... ...+.|+++|+||+|+.......+..+.+... .....+++++||+++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAASG 318 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCCC
Confidence 99999998 4455555555555554431 12468999999999997543333333222111 011125899999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.|++++++.|.+.+.+
T Consensus 319 ~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 319 LGVKELCWDLMTFIEE 334 (390)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999988754
No 188
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.87 E-value=4.6e-21 Score=134.02 Aligned_cols=156 Identities=18% Similarity=0.106 Sum_probs=102.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCC------------------CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHh
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGY------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
.++|+++|+.++|||||+++|+.... +.....|.......++..+..+.++||||+.++...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999984310 012222333333445566788999999999998888
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCCH-h----HHHHHcCCCCcCCC
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALSK-E----DLMEQMGLKSITDR 154 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 154 (184)
....+..+|++++|+|+...- .........++.. .++| +|+|+||+|+...... + ++.+.+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~--~~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGP--MPQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 888889999999999997632 2222222222222 3566 7899999999643221 1 12222211111223
Q ss_pred ceeEEEeeeCCCCCH----------HHHHHHHHHH
Q 029978 155 EVCCYMISCKNSTNI----------DTVIDWLVKH 179 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v----------~~l~~~i~~~ 179 (184)
.++++++||++|.|+ ..|++.|.+.
T Consensus 157 ~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~ 191 (195)
T cd01884 157 NTPIVRGSALKALEGDDPNKWVKKILELLDALDSY 191 (195)
T ss_pred CCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhC
Confidence 578999999999984 4666666544
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=8.7e-21 Score=155.40 Aligned_cols=152 Identities=24% Similarity=0.224 Sum_probs=103.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCccc--------chHhHHHhccC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCRA 87 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~ 87 (184)
..+|+|+|.+|||||||++++++... ...++.|...........+..+.+|||||.+. +......+++.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 36799999999999999999997543 12222233333334456678899999999653 23445567889
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|+++. +......+...+.. .++|+++|+||+|+..... ...+...+.. . ..+++||++|.
T Consensus 355 aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg~----~-~~~~iSA~~g~ 422 (712)
T PRK09518 355 ADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLGL----G-EPYPISAMHGR 422 (712)
T ss_pred CCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcCC----C-CeEEEECCCCC
Confidence 9999999999763 33333334443332 5799999999999865321 1122211111 1 25789999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
||+++++.+.+.+.+
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999987643
No 190
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.87 E-value=1.8e-22 Score=130.86 Aligned_cols=110 Identities=26% Similarity=0.507 Sum_probs=78.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC--CCCCC----CccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS--EDMIP----TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~--~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
||+++|++|||||||++++.+..+. ..+.+ +..............+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7899999999999999999987776 11112 22222223333334599999999988877767778999999999
Q ss_pred EeCCCCCChHHHHHH---HHHHhcCCCCCCCcEEEEeeCCC
Q 029978 95 VDAADYDNLPVSRSE---LHDLLSKPSLNGIPLLVLGNKID 132 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~piilv~nK~D 132 (184)
||+++++++..+..+ +..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999888887544 4444332 24699999999998
No 191
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=1.2e-20 Score=152.71 Aligned_cols=159 Identities=21% Similarity=0.263 Sum_probs=111.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCC--CCccceeeE--Ee--eCCEEEEEEeCCCcccchHhHHHhccCCC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMI--PTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVS 89 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~--~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (184)
..+...|+++|++++|||||++++....+..... .|....... .. .....+.+|||||++.|..++.+.+..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3456789999999999999999998766543322 222222222 22 24589999999999999999999999999
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCC----CcCCCceeEEEeeeCC
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK----SITDREVCCYMISCKN 165 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~ 165 (184)
++++|+|+++....+.. ..+..+ ...++|+|+|+||+|+.... .+++.+.+... ......++++++||++
T Consensus 321 iaILVVDA~dGv~~QT~-E~I~~~----k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 321 IAILIIAADDGVKPQTI-EAINYI----QAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEEECcCCCChhhH-HHHHHH----HhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 99999999874332222 112222 22578999999999997532 23333332211 1112246899999999
Q ss_pred CCCHHHHHHHHHHHh
Q 029978 166 STNIDTVIDWLVKHS 180 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~ 180 (184)
|.|+++|++.+....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999998754
No 192
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.87 E-value=1.7e-20 Score=150.42 Aligned_cols=155 Identities=20% Similarity=0.249 Sum_probs=108.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC--CCC-----C----------CCCCCccceeeEE-----eeCCEEEEEEeCCCcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG--GYS-----E----------DMIPTVGFNMRKV-----TKGNVTIKLWDLGGQP 75 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~--~~~-----~----------~~~~t~~~~~~~~-----~~~~~~~~~~D~~g~~ 75 (184)
+-.+++|+|+.++|||||+.+++.. ... . +...|+......+ +...+.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 3458999999999999999999852 111 1 1122332222223 2336899999999999
Q ss_pred cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH---hHHHHHcCCCCcC
Q 029978 76 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---EDLMEQMGLKSIT 152 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~~~~~ 152 (184)
++...+..+++.+|++++|+|+++....+....+.. ... .++|+++|+||+|+...... +++.+.++..
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 157 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID--- 157 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC---
Confidence 999989999999999999999998655554433322 221 46899999999998653221 2232222221
Q ss_pred CCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 153 DREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
...++++||++|.|++++++.|.+.+..
T Consensus 158 --~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 158 --ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred --cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 1248999999999999999999987653
No 193
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.87 E-value=6.2e-21 Score=148.38 Aligned_cols=153 Identities=19% Similarity=0.166 Sum_probs=102.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--C-------------------------------CCCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--Y-------------------------------SEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|++++|||||+++|+... . +.+...|+......++..+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 567999999999999999999998321 0 1123445555556677778
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--H--
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--K-- 139 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~-- 139 (184)
+.+.+|||||++++.......+..+|++++|+|+++..++.....+...+.... ...|+++|+||+|+.+... .
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHH
Confidence 999999999999887666666788999999999987323322222222332221 1246999999999975211 1
Q ss_pred --hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 140 --EDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 140 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+++.+.+.........++++++||++|.|+++
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 12222221111112245799999999999986
No 194
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.86 E-value=1.7e-20 Score=135.00 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=108.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC--------C------------CCCCCCccceeeEEeeCCEEEEEEeCCCcccchHh
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGY--------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~--------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
+|+++|++|+|||||+++++...- . .....|+......+.+.+.++++|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999984210 0 01112233344556788899999999999999888
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---H------------------
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---K------------------ 139 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~------------------ 139 (184)
+..+++.+|++++|+|+.+.... ....++..+.. .++|+++++||+|+..... .
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 89999999999999999875432 22333333322 4689999999999875310 0
Q ss_pred -----------------------hHHHHHcC---------------CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 140 -----------------------EDLMEQMG---------------LKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 140 -----------------------~~~~~~~~---------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+++++.+- ........+|++..||.++.|++.|++.+.+++.
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 11111111 0111234568888899999999999999998764
No 195
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=8.9e-22 Score=131.79 Aligned_cols=157 Identities=21% Similarity=0.373 Sum_probs=132.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE----eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..++++++|..|.||||++.+.+.++|+..+.+|++...... +.+.+++..|||.|+|.+......++-...+.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 368999999999999999999999999999999999777653 2445999999999999999988888889999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+||++.+-.+.+...|..++.+.. .++||+++|||.|..... .+...+......++.++++||+++.|.+.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccch
Confidence 999999989999999999887654 469999999999976542 2222344455567789999999999999999
Q ss_pred HHHHHHhh
Q 029978 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
-++.+.+.
T Consensus 162 l~LarKl~ 169 (216)
T KOG0096|consen 162 LWLARKLT 169 (216)
T ss_pred HHHhhhhc
Confidence 99887754
No 196
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.86 E-value=5.9e-22 Score=128.61 Aligned_cols=161 Identities=22% Similarity=0.385 Sum_probs=128.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.++|+++|++..|||||+-++.++++...+..+.+..... +....+.+.+||..|++++..+.+....++-+++++
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 4899999999999999999999998888888888765543 345568899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH--hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
||++.++....+..|+.+.....+ .-+| |+||||.|..-...+ ++.....+....+.-.++.++||+.++.||+.+
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 999999999999999998876544 5567 577999987543322 222222233333444567999999999999999
Q ss_pred HHHHHHHhh
Q 029978 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
|..++..+-
T Consensus 178 FK~vlAklF 186 (205)
T KOG1673|consen 178 FKIVLAKLF 186 (205)
T ss_pred HHHHHHHHh
Confidence 999887764
No 197
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=4.8e-20 Score=123.35 Aligned_cols=156 Identities=24% Similarity=0.349 Sum_probs=120.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC------------CCCCCCCccceeeEEeeCC-EEEEEEeCCCcccchHhHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY------------SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRFRSMWER 83 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~------------~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~ 83 (184)
....||+++|+.++||||+++++..... ..+...|+..++....... ..+.+++||||+++..+|.-
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~ 87 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEI 87 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHH
Confidence 4568999999999999999999985432 1112244555555544433 78999999999999999999
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+.+++.++++++|.+....+ .....+ .+..... .+|+++++||.|+.....++++.+.+.... ...++++++|
T Consensus 88 l~~ga~gaivlVDss~~~~~-~a~~ii-~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~a 160 (187)
T COG2229 88 LSRGAVGAIVLVDSSRPITF-HAEEII-DFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEIDA 160 (187)
T ss_pred HhCCcceEEEEEecCCCcch-HHHHHH-HHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeeec
Confidence 99999999999999998877 332322 2222211 299999999999999988888888776653 3457999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 029978 164 KNSTNIDTVIDWLVKH 179 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~ 179 (184)
.++.++.+.++.+...
T Consensus 161 ~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 161 TEGEGARDQLDVLLLK 176 (187)
T ss_pred ccchhHHHHHHHHHhh
Confidence 9999999999888765
No 198
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.86 E-value=6.6e-21 Score=148.19 Aligned_cols=153 Identities=19% Similarity=0.144 Sum_probs=101.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc--CCCC-------------------------------CCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT--GGYS-------------------------------EDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~--~~~~-------------------------------~~~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|+.++|||||+.+|+. +... .+...|.......+...+
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 5668999999999999999999984 2111 112334444445566778
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCcCC--H-
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALS--K- 139 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~- 139 (184)
+.+.+|||||++++.......+..+|++++|+|+++.+++...+. ....+.... ...|+++|+||+|+.+... .
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHHH
Confidence 899999999999887777777889999999999998753322111 112222221 2357999999999974211 1
Q ss_pred ---hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 140 ---EDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 140 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+++.+.+.........++++++||++|.|+++
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12222221111112346899999999999986
No 199
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=4.6e-20 Score=139.48 Aligned_cols=159 Identities=18% Similarity=0.191 Sum_probs=120.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCccc----------ch-HhHHHh
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR----------FR-SMWERY 84 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~-~~~~~~ 84 (184)
.++|+|+|.|++|||||+|++++.+. .+..+.|.......++.....+.++||+|..+ |. ......
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 59999999999999999999997653 45566677777777777888999999999432 21 122345
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--CCHhHHHHHcCCCCcCCCceeEEEee
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
+..++++++|+|++.+-+ ........+... .+.++++|+||+|+.+. ...++..+.+......-..++++++|
T Consensus 258 I~~a~vvllviDa~~~~~--~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 258 IERADVVLLVIDATEGIS--EQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred HhhcCEEEEEEECCCCch--HHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence 678999999999997543 333333333333 57899999999999775 44556666666655566678999999
Q ss_pred eCCCCCHHHHHHHHHHHhhh
Q 029978 163 CKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~ 182 (184)
|+++.+++++++.+.++.+.
T Consensus 333 A~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred ecCCCChHHHHHHHHHHHHH
Confidence 99999999999999887553
No 200
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.85 E-value=3.4e-20 Score=148.25 Aligned_cols=157 Identities=22% Similarity=0.329 Sum_probs=112.2
Q ss_pred EEEEEcCCCCChHHHHHHHHc--CCCCC----------------CCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT--GGYSE----------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~--~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (184)
+|+|+|+.++|||||+++++. +.+.. +...|+......+.+.++++++|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 789999999999999999985 22221 122344344455778889999999999999999999
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCC-CC-cCCCcee
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGL-KS-ITDREVC 157 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~-~~-~~~~~~~ 157 (184)
.+++.+|++++|+|+.+. .......++..+.. .++|+++|+||+|+..... .+++.+.+.. .. .....++
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 999999999999999863 23334445554443 4689999999999865422 1222222211 00 1123467
Q ss_pred EEEeeeCCCC----------CHHHHHHHHHHHhhh
Q 029978 158 CYMISCKNST----------NIDTVIDWLVKHSKS 182 (184)
Q Consensus 158 ~~~~Sa~~~~----------~v~~l~~~i~~~~~~ 182 (184)
++++||++|. |++.+++.|.+.+..
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 9999999996 799999999988753
No 201
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.85 E-value=1.9e-20 Score=144.51 Aligned_cols=162 Identities=16% Similarity=0.173 Sum_probs=103.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC---C--CCCCCccceeeE-------------------E-ee------CCEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS---E--DMIPTVGFNMRK-------------------V-TK------GNVT 65 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~---~--~~~~t~~~~~~~-------------------~-~~------~~~~ 65 (184)
++.++|+++|++++|||||++.+.+.... . +...|+...+.. . +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 46789999999999999999999742110 0 111122111100 0 01 1467
Q ss_pred EEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHH
Q 029978 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQ 145 (184)
Q Consensus 66 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~ 145 (184)
+.+|||||+++|...+......+|++++|+|+++..........+..+ ... ...|+++|+||+|+.+.....+..++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999888888888999999999998643112222222222 211 12478999999999764322222222
Q ss_pred cCC--CCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 146 MGL--KSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 146 ~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+.. .......++++++||++|.|++++++.|.+.+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 211 111123467999999999999999999988653
No 202
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.85 E-value=2.8e-20 Score=131.74 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=92.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC-CC--------------------------------CCCCCccceeeEEeeCCEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGY-SE--------------------------------DMIPTVGFNMRKVTKGNVTIK 67 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~-~~--------------------------------~~~~t~~~~~~~~~~~~~~~~ 67 (184)
+|+++|++|+|||||+++|+...- .. +...|.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999974211 00 122233333444556677899
Q ss_pred EEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHH
Q 029978 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQ 145 (184)
Q Consensus 68 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~ 145 (184)
+|||||++++.......++.+|++++|+|+++... ........+.... ...++|+|+||+|+.+... .+++...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~--~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL--EQTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc--HhHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998887666777889999999999987432 1111122222221 1245788999999975321 1122222
Q ss_pred cCC--CCcCCCceeEEEeeeCCCCCHHH
Q 029978 146 MGL--KSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 146 ~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+.. ........+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 110 00111234699999999999875
No 203
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.85 E-value=1.8e-20 Score=133.71 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=95.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcC--CC-------------------------------CCCCCCCccceeeEEeeCCEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATG--GY-------------------------------SEDMIPTVGFNMRKVTKGNVTIK 67 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~--~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 67 (184)
+|+++|++++|||||+.+|+.. .. ..+...|.......+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999721 00 01112233334445667788999
Q ss_pred EEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCC---h---HHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc----C
Q 029978 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN---L---PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA----L 137 (184)
Q Consensus 68 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~ 137 (184)
+|||||+..+.......++.+|++++|+|+++... + ......+... ... ...|+++|+||+|+... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEccccccccccHH
Confidence 99999998887777777888999999999987421 1 1112222222 111 23689999999999742 1
Q ss_pred CHhHHHHHcC----CCCcCCCceeEEEeeeCCCCCHH
Q 029978 138 SKEDLMEQMG----LKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 138 ~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
..+++.+.+. ........++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1223333221 11122235789999999999986
No 204
>PRK10218 GTP-binding protein; Provisional
Probab=99.85 E-value=1e-19 Score=145.49 Aligned_cols=160 Identities=20% Similarity=0.256 Sum_probs=111.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc--CCCCCC----------------CCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT--GGYSED----------------MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~--~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
.+-.+|+|+|+.++|||||+++++. +.+... ...|+......+.+.++.+++|||||+.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 3456899999999999999999996 333221 1112222333456778999999999999999
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCC-CCc-CC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGL-KSI-TD 153 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~-~~~-~~ 153 (184)
..+..+++.+|++++|+|+.+.... .....+..... .++|.++|+||+|+..... .+++.+.+.. ... ..
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 9999999999999999999874322 22333333322 4689999999999875432 2223332211 111 12
Q ss_pred CceeEEEeeeCCCC----------CHHHHHHHHHHHhh
Q 029978 154 REVCCYMISCKNST----------NIDTVIDWLVKHSK 181 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~----------~v~~l~~~i~~~~~ 181 (184)
..+|++++||++|. |+..|++.|.+.+.
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 34689999999998 58999999988765
No 205
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.84 E-value=3.9e-20 Score=148.52 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHc---CCCCCC--CCCCccceeeEEee-CCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT---GGYSED--MIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~---~~~~~~--~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.|+++|++++|||||++++.+ +.++.+ ...|+...+..+.. .+..+.+|||||+++|.......+..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 3589999999999999999985 233323 35555544444432 34568999999999998877788899999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCCHhHHHHHcCCC--CcCCCceeEEEeeeCCCCCHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALSKEDLMEQMGLK--SITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
|+|+++.. .........++.. .++| +++|+||+|+.+....++..+++... .......+++++||++|.|++
T Consensus 81 VVda~eg~--~~qT~ehl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 81 VVACDDGV--MAQTREHLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 99998632 2222222233322 2355 57999999997643333333322211 111123579999999999999
Q ss_pred HHHHHHHHHhh
Q 029978 171 TVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
+|++.|.+...
T Consensus 156 ~L~~~L~~~~~ 166 (614)
T PRK10512 156 ALREHLLQLPE 166 (614)
T ss_pred HHHHHHHHhhc
Confidence 99999987654
No 206
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.84 E-value=2e-19 Score=129.21 Aligned_cols=151 Identities=21% Similarity=0.217 Sum_probs=99.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC--CCCCCccceeeEEeeCCEEEEEEeCCCcccch-------HhHHHhccCCCEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR-------SMWERYCRAVSAI 91 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~~~~ 91 (184)
+|+++|++|+|||||++++.+..... ....|.......+...+..+++||+||..... ......++.+|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 68999999999999999999754321 12334444444455677899999999974322 2334578899999
Q ss_pred EEEEeCCCCCC-hHHHHHHHHH----------------------------------------HhcCC-------------
Q 029978 92 VYVVDAADYDN-LPVSRSELHD----------------------------------------LLSKP------------- 117 (184)
Q Consensus 92 i~v~d~~~~~~-~~~~~~~~~~----------------------------------------~~~~~------------- 117 (184)
++|+|+++.+. ...+...+.. ++...
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999987542 1111111110 00000
Q ss_pred -----------CCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 118 -----------SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 118 -----------~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
...-+|+++|+||+|+.+. ++...... ..+++++||+++.|++++++.+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~~~~-------~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELDLLAR-------QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHHHHhc-------CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0122599999999999654 33332111 124899999999999999999998764
No 207
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.84 E-value=7.6e-20 Score=145.76 Aligned_cols=156 Identities=18% Similarity=0.238 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCC----CCCCccceeeEEeeC----------------CEEEEEEeCCCcccchH
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSED----MIPTVGFNMRKVTKG----------------NVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~----~~~t~~~~~~~~~~~----------------~~~~~~~D~~g~~~~~~ 79 (184)
-.|+++|++++|||||++++.+..+... ..++++......+.. ...+.+|||||++.+..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 3589999999999999999997765432 222333333222110 01388999999999999
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--------------HhHH---
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--------------KEDL--- 142 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--------------~~~~--- 142 (184)
++...++.+|++++|+|+++...-+.. ..+ .++.. .++|+++|+||+|+.+... .+++
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~-e~i-~~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~ 159 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQ-EAL-NILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQN 159 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHH-HHH-HHHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHH
Confidence 989999999999999999874322221 111 12222 4689999999999964210 0001
Q ss_pred -----------HHHcCCCC-------cCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 143 -----------MEQMGLKS-------ITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 143 -----------~~~~~~~~-------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
....++.. ......+++++||++|.|+++|++++....
T Consensus 160 ~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 160 LDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 11122211 123357899999999999999999887543
No 208
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=3.5e-19 Score=135.06 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=113.4
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchH--------hH
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS--------MW 81 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~ 81 (184)
....+.+++++|+|.||+|||||+|.|++.+. ..-++.|...-...++...+.+.+.||+|...-.. ..
T Consensus 211 g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs 290 (454)
T COG0486 211 GKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERA 290 (454)
T ss_pred hhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHH
Confidence 34457789999999999999999999997653 45566677777777888999999999999543222 23
Q ss_pred HHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEe
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
...+..+|.+++|+|.+.+.+-.. ..... ....++|+++|.||.|+......... +. ....+++.+
T Consensus 291 ~~~i~~ADlvL~v~D~~~~~~~~d--~~~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~--~~------~~~~~~i~i 356 (454)
T COG0486 291 KKAIEEADLVLFVLDASQPLDKED--LALIE----LLPKKKPIIVVLNKADLVSKIELESE--KL------ANGDAIISI 356 (454)
T ss_pred HHHHHhCCEEEEEEeCCCCCchhh--HHHHH----hcccCCCEEEEEechhcccccccchh--hc------cCCCceEEE
Confidence 445788999999999998522111 11111 22367999999999999876442222 11 112258999
Q ss_pred eeCCCCCHHHHHHHHHHHhh
Q 029978 162 SCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~~~ 181 (184)
||+++.|++.|.+.|.+...
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred EecCccCHHHHHHHHHHHHh
Confidence 99999999999999988765
No 209
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.84 E-value=6.8e-20 Score=141.47 Aligned_cols=162 Identities=18% Similarity=0.177 Sum_probs=102.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC---CCC--CCCCCccceeeE--------------E------e------eCCEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG---YSE--DMIPTVGFNMRK--------------V------T------KGNVT 65 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~---~~~--~~~~t~~~~~~~--------------~------~------~~~~~ 65 (184)
++.++|+++|+.++|||||+.+|.+.- .+. +...|+...+.. + + .....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 567999999999999999999996421 111 122232221100 0 0 00368
Q ss_pred EEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHH
Q 029978 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQ 145 (184)
Q Consensus 66 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~ 145 (184)
+.+|||||++++..........+|++++|+|+++..........+..+ ... ...|+++|+||+|+.+.....+..+.
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHHHH
Confidence 999999999998877666677889999999998643111112222222 111 12468999999999764332221222
Q ss_pred cCC--CCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 146 MGL--KSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 146 ~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+.. ........+++++||++|.|+++|++.|.+.+.
T Consensus 164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 111 011123467999999999999999999988654
No 210
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.84 E-value=1.3e-19 Score=129.33 Aligned_cols=153 Identities=22% Similarity=0.234 Sum_probs=99.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCC----------------CCc-------ccee-----------------eEEe
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMI----------------PTV-------GFNM-----------------RKVT 60 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~----------------~t~-------~~~~-----------------~~~~ 60 (184)
+|+++|+.++|||||+.++..+.+..... .|. +++. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999999655432211 111 0110 1122
Q ss_pred eCCEEEEEEeCCCcccchHhHHHhcc--CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 61 KGNVTIKLWDLGGQPRFRSMWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
.....+.++||||++++.......+. .+|++++|+|+.... ......+..++.. .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--~~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--IGMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 33568999999999988765555553 689999999987643 2222223333322 4689999999999875433
Q ss_pred HhHHHH----HcCCC---------------------CcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 139 KEDLME----QMGLK---------------------SITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 139 ~~~~~~----~~~~~---------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
..+..+ .+... ......+|++.+||.+|.|+++|.+.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 333222 22210 11223458999999999999999988754
No 211
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.84 E-value=9.7e-20 Score=119.24 Aligned_cols=135 Identities=19% Similarity=0.238 Sum_probs=92.1
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCC----cccchHhHHHhccCCCEEEEEEe
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----QPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
||+++|+.|+|||||+++|.+....-.. |. .+... =.++|||| ...++.........+|.++++.|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~K--Tq-----~i~~~---~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKK--TQ-----AIEYY---DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCc--cc-----eeEec---ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 7899999999999999999864432221 11 11111 23479999 33455555666678999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc-CcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP-EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
++++.+.... . .....+.|+|=|+||+|+. +..+.+...+.+...... .+|++|+.+|.|+++|.++
T Consensus 73 at~~~~~~pP-----~---fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 73 ATEPRSVFPP-----G---FASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred CCCCCccCCc-----h---hhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHH
Confidence 9986543221 1 1222568999999999998 333444444444433222 3799999999999999998
Q ss_pred HH
Q 029978 176 LV 177 (184)
Q Consensus 176 i~ 177 (184)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 212
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.83 E-value=1.4e-19 Score=123.66 Aligned_cols=154 Identities=21% Similarity=0.247 Sum_probs=96.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeCCEEEEEEeCCCccc----------chHhHHHhcc--
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKGNVTIKLWDLGGQPR----------FRSMWERYCR-- 86 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~-- 86 (184)
.|+++|++|+|||||++.+.++.......++.+.... ..... ..+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 3799999999999999999966665555555443222 12222 2899999999432 3333334443
Q ss_pred -CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc-CCCceeEEEeeeC
Q 029978 87 -AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCK 164 (184)
Q Consensus 87 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 164 (184)
..+.+++++|......... ......+.. .+.|+++|+||+|+.................. .....+++++||+
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 3567889999876532221 111222222 35899999999999654332222222211111 2334578999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 029978 165 NSTNIDTVIDWLVKHS 180 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~ 180 (184)
++.|++++++.+.+++
T Consensus 155 ~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 155 KGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998764
No 213
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.83 E-value=3e-19 Score=146.35 Aligned_cols=152 Identities=20% Similarity=0.218 Sum_probs=104.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCCccceeeEEeeCCEEEEEEeCCCcccchH----------hHHHh-
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS----------MWERY- 84 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~- 84 (184)
+.++|+++|++|||||||+|++++..... .+..|.......+...+.++.+|||||...+.. ....+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 35789999999999999999998765432 233344444445667778999999999865431 11223
Q ss_pred -ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 85 -CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 85 -~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
...+|++++|+|+++.+.. ..++.++.+ .++|+++|+||+|+.+........+.+.. ...++++++||
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~----~LG~pVvpiSA 150 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSA----RLGCPVIPLVS 150 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHH----HhCCCEEEEEe
Confidence 2478999999999875432 223333332 46899999999998644322222222211 12346999999
Q ss_pred CCCCCHHHHHHHHHHHh
Q 029978 164 KNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~ 180 (184)
+++.|++++.+.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999998764
No 214
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.83 E-value=2.7e-19 Score=130.76 Aligned_cols=112 Identities=26% Similarity=0.308 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC-CCCC-----------------------CCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGG-YSED-----------------------MIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~-~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
-+|+++|++|+|||||+++++... .... ...++......+++.++++++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999998321 1000 0112222334577888999999999999
Q ss_pred cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 76 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
+|.......++.+|++++|+|+++..... ...++. ... ..++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~-~~~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFE-VCR---LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHH-HHH---hcCCCEEEEEECCccCCC
Confidence 98887778889999999999998743222 222232 222 247899999999998543
No 215
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.8e-19 Score=118.32 Aligned_cols=175 Identities=34% Similarity=0.564 Sum_probs=139.8
Q ss_pred hHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHH
Q 029978 3 LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (184)
||.+.++++- ..++.-|++++|-.|+|||||++.+. ++.-.+..||..........++.++.-+|..|+..-+..+.
T Consensus 6 wF~~VLq~Lg--L~kK~gKllFlGLDNAGKTTLLHMLK-dDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wk 82 (193)
T KOG0077|consen 6 WFSSVLQFLG--LYKKFGKLLFLGLDNAGKTTLLHMLK-DDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWK 82 (193)
T ss_pred HHHHHHHHHH--HhccCceEEEEeecCCchhhHHHHHc-cccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHH
Confidence 5666776665 33778899999999999999999886 44455667777777777778899999999999999999999
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCC------------CC
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL------------KS 150 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~------------~~ 150 (184)
.++..+|++++++|+-+.+.|.+.+..+..++......+.|+++.+||+|.+.....++.....++ ..
T Consensus 83 dyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~ 162 (193)
T KOG0077|consen 83 DYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTD 162 (193)
T ss_pred HHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccC
Confidence 999999999999999999999999988888877666678999999999999887665555544432 12
Q ss_pred cCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 151 ITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
...+...++.||...+.+-.+-+.++.+++
T Consensus 163 ~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 163 SNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred CCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 223456788899988888777776665543
No 216
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.82 E-value=2.2e-19 Score=143.88 Aligned_cols=140 Identities=26% Similarity=0.306 Sum_probs=96.2
Q ss_pred cCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEeeCCEEEEEEeCCCcccchHh------HHHhc--cCCCEEEEEE
Q 029978 26 GLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFRSM------WERYC--RAVSAIVYVV 95 (184)
Q Consensus 26 G~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~i~v~ 95 (184)
|.+|+|||||+|++.+..+...+.+ |.......++..+..+++|||||+..+... ...++ +.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 8999999999999998765444333 333333345556678999999998765432 23332 4789999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC----HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS----KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+++.+. ......++.+ .++|+++|+||+|+.+... .++..+.+ +.+++++||++|.|+++
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l--------g~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL--------GVPVVPTSATEGRGIER 145 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc--------CCCEEEEECCCCCCHHH
Confidence 9987442 1222233322 4689999999999864322 12222222 24699999999999999
Q ss_pred HHHHHHHHh
Q 029978 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+++.+.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998754
No 217
>PRK12736 elongation factor Tu; Reviewed
Probab=99.82 E-value=5.7e-19 Score=135.92 Aligned_cols=161 Identities=17% Similarity=0.143 Sum_probs=105.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCC------------------CCCCCCccceeeEEeeCCEEEEEEeCCCcccc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (184)
.++.++|+++|++++|||||+++|++.... .....|.......+...+..+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 356799999999999999999999852110 12222333333344455678999999999998
Q ss_pred hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCCHh-----HHHHHcCCCCc
Q 029978 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALSKE-----DLMEQMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~-----~~~~~~~~~~~ 151 (184)
.......+..+|++++|+|+.....-+ ....+. +... .++| +|+|+||+|+.+..... ++.+.+.....
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~-~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHIL-LARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHH-HHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 877777778999999999998632211 122222 2222 3577 67899999997432211 11122111111
Q ss_pred CCCceeEEEeeeCCCC--------CHHHHHHHHHHHhh
Q 029978 152 TDREVCCYMISCKNST--------NIDTVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~~~ 181 (184)
....++++++||++|. ++++|++.+.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 1234689999999983 68888888887654
No 218
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=1.4e-18 Score=118.86 Aligned_cols=164 Identities=22% Similarity=0.306 Sum_probs=110.0
Q ss_pred HHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCC----CCCCCCCccceeeEEeeCCEEEEEEeCCC----------cc
Q 029978 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGY----SEDMIPTVGFNMRKVTKGNVTIKLWDLGG----------QP 75 (184)
Q Consensus 10 ~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----------~~ 75 (184)
++..++.+....|+++|.+|||||||||++++... ...++.|....+..++. .+.+.|.|| .+
T Consensus 15 ~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 15 DIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred CHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHH
Confidence 34556677788999999999999999999998553 33344444334443333 388899998 23
Q ss_pred cchHhHHHhccC---CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh----HHHHHcCC
Q 029978 76 RFRSMWERYCRA---VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE----DLMEQMGL 148 (184)
Q Consensus 76 ~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~----~~~~~~~~ 148 (184)
........|+.. ..++++++|+..+-. .....+.+++.. .++|+++|+||+|+....... .+.+.+..
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~ 166 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKK 166 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcC
Confidence 334455556543 467888999876432 333333333333 679999999999998864443 33334443
Q ss_pred CCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 149 KSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 149 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
......+ ++..|+..+.|++++.+.|.+.+...
T Consensus 167 ~~~~~~~--~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 167 PPPDDQW--VVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred CCCccce--EEEEecccccCHHHHHHHHHHHhhcc
Confidence 3333222 77889999999999999999887653
No 219
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.82 E-value=7.9e-19 Score=140.39 Aligned_cols=155 Identities=18% Similarity=0.300 Sum_probs=101.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCC----CCCCccceeeEEee------CC-----E-----EEEEEeCCCcccc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSED----MIPTVGFNMRKVTK------GN-----V-----TIKLWDLGGQPRF 77 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~----~~~t~~~~~~~~~~------~~-----~-----~~~~~D~~g~~~~ 77 (184)
+...|+++|++++|||||++++.+...... ..++++......+. .. . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 445799999999999999999975433211 12233322222110 00 1 2689999999999
Q ss_pred hHhHHHhccCCCEEEEEEeCCCC---CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--------------Hh
Q 029978 78 RSMWERYCRAVSAIVYVVDAADY---DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--------------KE 140 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--------------~~ 140 (184)
...+...++.+|++++|+|+++. +++..+ . +... .++|+++|+||+|+.+... ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~-~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAI----N-ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH----H-HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 98888888999999999999873 222222 1 2222 4789999999999853110 00
Q ss_pred -----------HH---HHHcCCCC-------cCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 141 -----------DL---MEQMGLKS-------ITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 141 -----------~~---~~~~~~~~-------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
++ ....++.. ......+++++||++|.|++++++.+...+
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 01 11112211 112357899999999999999999887543
No 220
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.80 E-value=1.4e-19 Score=139.54 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=125.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+.++|+++|+.|+||||||-+++..+|++...+-......+.+ -..+...+.|++..++-+......++.+|++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 457799999999999999999999999998887776665555433 233558899998777767777888899999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCccCcCCH--hH-HHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPS--LNGIPLLVLGNKIDKPEALSK--ED-LMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
++++++++++..+...|..+.++.. ..++|||+||||+|....... +. ....+..... --.+++|||++-.|
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E---iEtciecSA~~~~n 162 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE---IETCIECSALTLAN 162 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH---HHHHHhhhhhhhhh
Confidence 9999999999999987777765533 368999999999999765443 22 2222211111 11489999999999
Q ss_pred HHHHHHHHHHHhh
Q 029978 169 IDTVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~~~ 181 (184)
+.++|....+++.
T Consensus 163 ~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 163 VSELFYYAQKAVI 175 (625)
T ss_pred hHhhhhhhhheee
Confidence 9999998877653
No 221
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.80 E-value=5.8e-18 Score=124.37 Aligned_cols=111 Identities=22% Similarity=0.234 Sum_probs=80.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC-C-------------------CCCCCccceeeEEeeCCEEEEEEeCCCcccchHh
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS-E-------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~-~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
+|+++|++|+|||||+++++...-. . ....++......+.+.++.+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999742110 0 0122233334456677889999999999988888
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
....++.+|++++|+|++....... ...+..+. ..++|.++|+||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~----~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFAD----EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHH----HcCCCEEEEEECCccCCC
Confidence 8889999999999999987654332 22233222 246899999999998753
No 222
>PRK12735 elongation factor Tu; Reviewed
Probab=99.80 E-value=1.4e-18 Score=133.78 Aligned_cols=159 Identities=19% Similarity=0.158 Sum_probs=103.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC-------CC-----------CCCCCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG-------GY-----------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~-------~~-----------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
++.++|+++|++++|||||+++|++. .+ +.....|.......+...+..+.++||||+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 56799999999999999999999852 10 0012223333333344566789999999999888
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCccCcCCH-h----HHHHHcCCCCcC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPEALSK-E----DLMEQMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+.....-+ ....+. ++.. .++|.+ +|+||+|+.+.... + ++.+.+......
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~-~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQ-TREHIL-LARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchh-HHHHHH-HHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 77777788999999999998643211 122222 2222 457865 57999999743221 1 121121111111
Q ss_pred CCceeEEEeeeCCCC----------CHHHHHHHHHHHh
Q 029978 153 DREVCCYMISCKNST----------NIDTVIDWLVKHS 180 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~----------~v~~l~~~i~~~~ 180 (184)
....+++++||++|. ++.+|++.+.+.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 134689999999984 6788888887764
No 223
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.80 E-value=1.8e-18 Score=136.81 Aligned_cols=115 Identities=23% Similarity=0.293 Sum_probs=81.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc-CCCCC-----------------------CCCCCccceeeEEeeCCEEEEEEeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT-GGYSE-----------------------DMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~-~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+..+|+|+|++++|||||+++++. ..... +...|+......+++.++.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999973 11100 00111222334467788999999999
Q ss_pred CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
|+.++.......++.+|++++|+|+++.... .....+. .. ...++|+++++||+|+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~-~~---~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLME-VC---RLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHH-HH---HhcCCCEEEEEECCccccc
Confidence 9999988888888999999999999874322 1223332 22 2257999999999998654
No 224
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.80 E-value=2.2e-18 Score=126.13 Aligned_cols=138 Identities=20% Similarity=0.152 Sum_probs=92.2
Q ss_pred EEEEEcCCCCChHHHHHHHHc--CCC------------------CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHh
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT--GGY------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~--~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
+|+++|++|+|||||+++++. +.. ..+...|+......+.+.++++.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999973 110 112233444445567788899999999999998888
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEE
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+...++.+|++++|+|+.+...-+. ...+..+.. .++|+++++||+|+... +.++..+++............++
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~a-~~~~~~~~l~~~l~~~~~~~~~P 154 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR----YNVPRIAFVNKMDRTGA-DFFRVVEQIREKLGANPVPLQLP 154 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCCC-CHHHHHHHHHHHhCCCceEEEec
Confidence 8999999999999999987432221 222332222 46899999999998753 22333333322222223334666
Q ss_pred eeeC
Q 029978 161 ISCK 164 (184)
Q Consensus 161 ~Sa~ 164 (184)
+|+.
T Consensus 155 isa~ 158 (270)
T cd01886 155 IGEE 158 (270)
T ss_pred cccC
Confidence 7665
No 225
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.80 E-value=1.8e-18 Score=133.34 Aligned_cols=158 Identities=19% Similarity=0.161 Sum_probs=100.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC-----C--C-----------CCCCCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG-----G--Y-----------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~-----~--~-----------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
++.++|+++|+.++|||||+++|++. . + +.+...|+......++..+..+.+|||||+++|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 56799999999999999999999732 0 0 1113334444444555567789999999999988
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCccCcCC-Hh----HHHHHcCCCCcC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPEALS-KE----DLMEQMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 152 (184)
.........+|++++|+|+.....-+ ..+.+..+ .. .++|.+ +|+||+|+.+... .+ ++.+.+......
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQ-TREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHH-HH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 77777778899999999998642222 12222222 22 357755 6899999975322 11 122222211111
Q ss_pred CCceeEEEeeeCCCC--------CHHHHHHHHHHH
Q 029978 153 DREVCCYMISCKNST--------NIDTVIDWLVKH 179 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~ 179 (184)
...++++++||+++. ++.++++.+.+.
T Consensus 165 ~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 165 GDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred ccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 234689999999875 345566655543
No 226
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.79 E-value=1.7e-18 Score=121.67 Aligned_cols=157 Identities=15% Similarity=0.238 Sum_probs=95.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccc-----eeeEEee-CCEEEEEEeCCCcccchH-----hHHHhccC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGF-----NMRKVTK-GNVTIKLWDLGGQPRFRS-----MWERYCRA 87 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~-----~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~ 87 (184)
.++|+++|++|+|||||+|.+.+...+.....+.+. ....+.. ....+.+|||||...... .....+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 368999999999999999999976554322222221 0011111 123689999999753221 11223567
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---------HhHHHHHcCCC------CcC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---------KEDLMEQMGLK------SIT 152 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---------~~~~~~~~~~~------~~~ 152 (184)
+|.++++.+. .+......+...+.. .+.|+++|+||+|+..... .+++.+.+... ...
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8888887432 344555444444443 2589999999999843211 12323222211 111
Q ss_pred CCceeEEEeeeC--CCCCHHHHHHHHHHHhhh
Q 029978 153 DREVCCYMISCK--NSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 153 ~~~~~~~~~Sa~--~~~~v~~l~~~i~~~~~~ 182 (184)
...+++|.+|+. .++++..|.+.+...+.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 234579999999 579999999999988764
No 227
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=1.2e-17 Score=121.40 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=121.8
Q ss_pred hHHHHHHHHHhhccC--CceEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEeeCCEEEEEEeCCCccc--
Q 029978 3 LWEAFLNWLRSLFFK--QEMELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-- 76 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-- 76 (184)
++++...+++.++.- ....|+|.|.||||||||++.+++... .+-+..|.+....+++.+..+++++||||.-+
T Consensus 150 fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP 229 (346)
T COG1084 150 FLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP 229 (346)
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCC
Confidence 466777788887764 358899999999999999999997543 45566788888889999999999999999321
Q ss_pred ----c---hHhHHHhccCCCEEEEEEeCCCCCChHHH--HHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC
Q 029978 77 ----F---RSMWERYCRAVSAIVYVVDAADYDNLPVS--RSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG 147 (184)
Q Consensus 77 ----~---~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~ 147 (184)
. +......-+-.++++|++|.+....+.-. ...+.++... .+.|+++|.||+|....+..+++.....
T Consensus 230 l~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~ 306 (346)
T COG1084 230 LEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVL 306 (346)
T ss_pred hHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHH
Confidence 1 11122233557899999999886655433 3345555444 4589999999999987655555544432
Q ss_pred CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 148 LKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
... ......+++..+.+++.+.+.+....
T Consensus 307 ~~~----~~~~~~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 307 EEG----GEEPLKISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred hhc----cccccceeeeehhhHHHHHHHHHHHh
Confidence 221 11256788999999998888887763
No 228
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.79 E-value=1.6e-18 Score=123.30 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=98.1
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCC---------------------CCCccceeeEE-----eeCCEEEEEEeCCCc
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDM---------------------IPTVGFNMRKV-----TKGNVTIKLWDLGGQ 74 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~---------------------~~t~~~~~~~~-----~~~~~~~~~~D~~g~ 74 (184)
+|+++|++|+|||||+++++........ ..+.......+ +...+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999854322110 01111111111 123578999999999
Q ss_pred ccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc-------C---CHhHHHH
Q 029978 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA-------L---SKEDLME 144 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-------~---~~~~~~~ 144 (184)
.++.......+..+|++++|+|+.+..+... ..++..... .++|+++|+||+|+... + ...+..+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~ 156 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIID 156 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHH
Confidence 9998888888999999999999987665432 223333222 35899999999998521 1 0111111
Q ss_pred Hc-------CCCCc---CCCceeEEEeeeCCCCCHH--------HHHHHHHHHhh
Q 029978 145 QM-------GLKSI---TDREVCCYMISCKNSTNID--------TVIDWLVKHSK 181 (184)
Q Consensus 145 ~~-------~~~~~---~~~~~~~~~~Sa~~~~~v~--------~l~~~i~~~~~ 181 (184)
.+ ..... ......+++.|++.++++. +|++.|.+.+.
T Consensus 157 ~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 157 EVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 11 11100 0012237789999998877 67777666543
No 229
>CHL00071 tufA elongation factor Tu
Probab=99.79 E-value=2.8e-18 Score=132.67 Aligned_cols=147 Identities=19% Similarity=0.143 Sum_probs=95.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC----------------C--CCCCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY----------------S--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~----------------~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
++.++|+++|++++|||||+++|++..- . .+...|.......+...+..+.+.||||+.++.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 5569999999999999999999985311 0 012222222233344566788999999999888
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCCH-h----HHHHHcCCCCcC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALSK-E----DLMEQMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+.... .........++.. .++| +|+|+||+|+.+.... + ++.+.+......
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~--~~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGP--MPQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 87778888999999999998632 2222222222222 4578 7789999999753221 1 222222211112
Q ss_pred CCceeEEEeeeCCCCC
Q 029978 153 DREVCCYMISCKNSTN 168 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~ 168 (184)
....+++++||.+|.|
T Consensus 165 ~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 165 GDDIPIVSGSALLALE 180 (409)
T ss_pred CCcceEEEcchhhccc
Confidence 2347899999998864
No 230
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.79 E-value=5e-18 Score=122.19 Aligned_cols=161 Identities=21% Similarity=0.233 Sum_probs=109.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCccc------c------hHhH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR------F------RSMW 81 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~------~------~~~~ 81 (184)
.+.+.|+++|.||+|||||.|.+.+... ..+...|.......+..+...+.|+||||... + ....
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 4458999999999999999999998765 34455666666777888899999999999321 1 1122
Q ss_pred HHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-----------------HhHHHH
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-----------------KEDLME 144 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-----------------~~~~~~ 144 (184)
...+..+|++++++|+++....... ..+..+..+ ..+|-++|.||+|...... ..++.+
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 3446779999999999963322222 122222222 4689999999999876421 112222
Q ss_pred HcCCCC---------cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 145 QMGLKS---------ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 145 ~~~~~~---------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
...... -+..+-.+|.+||++|.||+++-+++...+.
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 222111 0112335899999999999999999987654
No 231
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.78 E-value=4.6e-18 Score=132.35 Aligned_cols=149 Identities=14% Similarity=0.146 Sum_probs=98.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--C-------------------------------CCCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--Y-------------------------------SEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~~ 63 (184)
++.++++++|+.++|||||+.+|+... . +.+...|+......+...+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 567899999999999999999987311 0 0111223333344456677
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChH-------HHHHHHHHHhcCCCCCCC-cEEEEeeCCCccC
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP-------VSRSELHDLLSKPSLNGI-PLLVLGNKIDKPE 135 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~-piilv~nK~D~~~ 135 (184)
..++++|+||+++|.......+..+|++++|+|+.+. .|. ..+..+. ++.. .++ ++|+++||+|+.+
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHH---cCCCcEEEEEEcccCCc
Confidence 8999999999999999889999999999999999862 221 2222222 2222 356 4788999999862
Q ss_pred c----CC----HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 136 A----LS----KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 136 ~----~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
. .. .+++...+.........++++++||++|.|+.
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 1 11 12222222211122234689999999999985
No 232
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.78 E-value=8.1e-18 Score=119.64 Aligned_cols=109 Identities=23% Similarity=0.231 Sum_probs=77.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC--CC----------------CCCCCccceeeE--Ee--------eCCEEEEEEeCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGY--SE----------------DMIPTVGFNMRK--VT--------KGNVTIKLWDLG 72 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~--~~----------------~~~~t~~~~~~~--~~--------~~~~~~~~~D~~ 72 (184)
+|+++|+.++|||||+.+|+...- .. +...|+...... +. ...+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999984221 10 111122222111 22 226889999999
Q ss_pred CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
|+++|.......++.+|++++|+|+.+....+. ...+..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999987654443 222222222 358999999999986
No 233
>PRK00049 elongation factor Tu; Reviewed
Probab=99.78 E-value=7.2e-18 Score=129.85 Aligned_cols=159 Identities=18% Similarity=0.115 Sum_probs=104.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC------------------CCCCCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
++.++|+++|+.++|||||+++|++... +.....|+......+...+..+.+.||||+.++.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 5679999999999999999999985210 0122223333333444566789999999999888
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCccCcCC-Hh----HHHHHcCCCCcC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPEALS-KE----DLMEQMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+..... .....+..++.. .++|.+ +++||+|+.+... .+ ++.+.+......
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~--~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM--PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc--hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777788899999999999976422 222222222222 457876 5899999974321 11 222222211112
Q ss_pred CCceeEEEeeeCCCC----------CHHHHHHHHHHHh
Q 029978 153 DREVCCYMISCKNST----------NIDTVIDWLVKHS 180 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~----------~v~~l~~~i~~~~ 180 (184)
....+++++||+++. ++.++++.|.+.+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 245789999999875 5678888887654
No 234
>PRK13351 elongation factor G; Reviewed
Probab=99.78 E-value=1.4e-17 Score=136.42 Aligned_cols=115 Identities=25% Similarity=0.220 Sum_probs=88.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC-------------CC-------CCCCCCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG-------------YS-------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~-------------~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
.+-.+|+|+|+.|+|||||+++++... +. .+...|+......+.+.+..+++|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 456799999999999999999998421 00 0234455555566778889999999999999
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
+...+..+++.+|++++|+|+++....+.. ..+..+.. .++|+++|+||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 988889999999999999999886655443 33333322 46899999999998764
No 235
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.78 E-value=6.7e-18 Score=132.42 Aligned_cols=154 Identities=14% Similarity=0.072 Sum_probs=98.0
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCC--CC---------------------------------CCCCCccceeeEE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGY--SE---------------------------------DMIPTVGFNMRKV 59 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~--~~---------------------------------~~~~t~~~~~~~~ 59 (184)
..+..++|+++|++++|||||+.+|+...- .. +...|+......+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 346779999999999999999999983211 00 0111223333345
Q ss_pred eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-
Q 029978 60 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS- 138 (184)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~- 138 (184)
...+..+.++||||+++|.......+..+|++++|+|+.....-+. .....+..... ..|+|+|+||+|+.+...
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt--~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT--RRHSFIATLLG--IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc--hHHHHHHHHhC--CCceEEEEEeeccccchhH
Confidence 5667889999999999887666666799999999999976421111 11111222111 247899999999974321
Q ss_pred -HhHHHHHcCC---CCcCCCceeEEEeeeCCCCCHHHH
Q 029978 139 -KEDLMEQMGL---KSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 139 -~~~~~~~~~~---~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
.+++.+.+.. ........+++++||++|.|++++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2223222211 000023467999999999999764
No 236
>PLN03126 Elongation factor Tu; Provisional
Probab=99.77 E-value=1.1e-17 Score=130.78 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=96.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC------CC------------CCCCCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG------GY------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~------~~------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
++.++|+++|++++|||||+++|+.. .. ......|+......++..+..+.++|+||+++|.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 55799999999999999999999841 11 1112223333333455667789999999999998
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCC-Hh----HHHHHcCCCCcC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALS-KE----DLMEQMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+.+...-+ .+..+. +... .++| +++++||+|+.+.+. .+ ++.+.+......
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~-~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMPQ-TKEHIL-LAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHH-HHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 88888888999999999998643212 122222 2222 3678 778999999975321 11 122222111112
Q ss_pred CCceeEEEeeeCCCCC
Q 029978 153 DREVCCYMISCKNSTN 168 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~ 168 (184)
....+++++||.++.|
T Consensus 234 ~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 234 GDDIPIISGSALLALE 249 (478)
T ss_pred cCcceEEEEEcccccc
Confidence 2467899999998753
No 237
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.77 E-value=9.7e-18 Score=136.12 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=103.1
Q ss_pred HHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCC-C------------CC----------------------CC
Q 029978 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYS-E------------DM----------------------IP 50 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~-~------------~~----------------------~~ 50 (184)
++..|+.....++.++|+++|++++|||||+++++...-. . .. ..
T Consensus 11 ~~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~ 90 (632)
T PRK05506 11 DILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGI 90 (632)
T ss_pred cHHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCc
Confidence 4566777777788899999999999999999999842210 0 01 11
Q ss_pred CccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 029978 51 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 130 (184)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 130 (184)
|+......+...+..+.++||||++++.......+..+|++++|+|+.....-+. ... ..+.... ...|+++|+||
T Consensus 91 Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~-~~~~~~~--~~~~iivvvNK 166 (632)
T PRK05506 91 TIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRH-SFIASLL--GIRHVVLAVNK 166 (632)
T ss_pred CceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHH-HHHHHHh--CCCeEEEEEEe
Confidence 2222333455566789999999999887666667889999999999976422111 111 1122211 12578999999
Q ss_pred CCccCcCC--HhHHHHHcCC--CCcCCCceeEEEeeeCCCCCHHH
Q 029978 131 IDKPEALS--KEDLMEQMGL--KSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 131 ~D~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+.+... .+++..++.. ........+++++||++|.|+++
T Consensus 167 ~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 167 MDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 99974211 1222222210 01111235699999999999874
No 238
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.77 E-value=2.9e-17 Score=129.99 Aligned_cols=115 Identities=20% Similarity=0.284 Sum_probs=81.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc-CCCCCC-----------------------CCCCccceeeEEeeCCEEEEEEeC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT-GGYSED-----------------------MIPTVGFNMRKVTKGNVTIKLWDL 71 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~-~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~D~ 71 (184)
..+..+|+|+|++++|||||+++++. ...... ...|+......+++.++.+++|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 35667999999999999999999862 111100 011112233446778899999999
Q ss_pred CCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 72 GGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 72 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
||+.++.......++.+|++++|+|+.+. +......+...... .++|+++++||+|+..
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 99998888778888999999999999863 22222222233332 5689999999999864
No 239
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.77 E-value=7.3e-18 Score=131.27 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=99.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc--CCCC-------------------------------CCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT--GGYS-------------------------------EDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~--~~~~-------------------------------~~~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|+.++|||||+.+++. +... .+...|+......+...+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 5678999999999999999999974 1100 111223333444566677
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC---Ch---HHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccC-
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NL---PVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPE- 135 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~- 135 (184)
..+.++||||+++|.......+..+|++++|+|+.... .+ ...++.+.. +.. .++| +|+++||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~-~~~---~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALL-AFT---LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHH-HHH---cCCCeEEEEEEccccccc
Confidence 89999999999999888888889999999999998632 11 122222222 222 3566 678999999532
Q ss_pred ---cCCHhHHHHHc----CCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 136 ---ALSKEDLMEQM----GLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 136 ---~~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
....+++.+++ .........++++++||.+|.|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11222333322 2212222357899999999999863
No 240
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.1e-17 Score=128.74 Aligned_cols=158 Identities=22% Similarity=0.300 Sum_probs=111.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCC--CCccceeeEEee---CCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMI--PTVGFNMRKVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~--~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..-|+++|+...|||||+..+........-. -|-....+.+.. ..-.+.|+|||||+-|..++.+-..-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 34568999999999999999998655432221 122222233333 2357999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC---CC-CcCCCceeEEEeeeCCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG---LK-SITDREVCCYMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+++++.- + ....+-.++.+..++|++++.||+|+++. +++.+..++. +. ..+.....++++||++|.|
T Consensus 84 LVVa~dDGv--~---pQTiEAI~hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 84 LVVAADDGV--M---PQTIEAINHAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEccCCc--c---hhHHHHHHHHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 999999732 2 22222233344478999999999999854 3344333332 22 2233457899999999999
Q ss_pred HHHHHHHHHHHhh
Q 029978 169 IDTVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~~~ 181 (184)
+++|++.++-...
T Consensus 158 i~eLL~~ill~ae 170 (509)
T COG0532 158 IDELLELILLLAE 170 (509)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876543
No 241
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.76 E-value=3.1e-17 Score=106.53 Aligned_cols=165 Identities=15% Similarity=0.235 Sum_probs=121.4
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeE-Ee---eCCEEEEEEeCCCcccc-hHhHHHhccC
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRK-VT---KGNVTIKLWDLGGQPRF-RSMWERYCRA 87 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~-~~---~~~~~~~~~D~~g~~~~-~~~~~~~~~~ 87 (184)
...+..+|+++|.-++|||.++.+++-+.. ..+..||+.-.+.- ++ +..=.+.++||.|-... ..+...++.-
T Consensus 5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 346789999999999999999999985543 45566777644432 22 12236889999997666 5677788899
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++||+..+++||+.......++-.......+||++.+||.|+.+... .....+....+...+..+++++.+..
T Consensus 85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~---vd~d~A~~Wa~rEkvkl~eVta~dR~ 161 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE---VDMDVAQIWAKREKVKLWEVTAMDRP 161 (198)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchh---cCHHHHHHHHhhhheeEEEEEeccch
Confidence 999999999999999998876555555555557899999999999965422 11111222233344568999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
.+-+.|..+...+.+
T Consensus 162 sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 162 SLYEPFTYLASRLHQ 176 (198)
T ss_pred hhhhHHHHHHHhccC
Confidence 999999988877654
No 242
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.76 E-value=7.1e-18 Score=130.29 Aligned_cols=148 Identities=14% Similarity=0.098 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC--CC---------------------------------CCCCCCccceeeEEeeCCE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGG--YS---------------------------------EDMIPTVGFNMRKVTKGNV 64 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~--~~---------------------------------~~~~~t~~~~~~~~~~~~~ 64 (184)
++|+++|+.++|||||+.+++... .. .+...|+......+...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999997211 00 0111223333444556678
Q ss_pred EEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHH
Q 029978 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDL 142 (184)
Q Consensus 65 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~ 142 (184)
.+.++||||+++|.......+..+|++++|+|+.....-+. .....+..... ..++++|+||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt--~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT--RRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc--HHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHH
Confidence 99999999999987777777899999999999976432111 11122222211 236889999999975321 1122
Q ss_pred HHHcCC--CCcCCCceeEEEeeeCCCCCHHH
Q 029978 143 MEQMGL--KSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 143 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
.+.+.. ........+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222210 00111245799999999999885
No 243
>PLN03127 Elongation factor Tu; Provisional
Probab=99.76 E-value=2.7e-17 Score=127.99 Aligned_cols=161 Identities=20% Similarity=0.139 Sum_probs=104.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcC------C------------CCCCCCCCccceeeEEeeCCEEEEEEeCCCcccc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATG------G------------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~------~------------~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (184)
.++.++|+++|+.++|||||+++|.+. . .+.+...|+......++..+..+.++||||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 356799999999999999999999621 1 0111333555445556666788999999999998
Q ss_pred hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCCH-hHHH----HHcCCCCc
Q 029978 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALSK-EDLM----EQMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-~~~~----~~~~~~~~ 151 (184)
.......+..+|++++|+|+.... .........++.. .++| +|+|+||+|+.+.... +.+. +.+.....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 777777777899999999987642 2222222222222 4688 5788999999753211 1111 11111111
Q ss_pred CCCceeEEEeeeC---CCCC-------HHHHHHHHHHHhh
Q 029978 152 TDREVCCYMISCK---NSTN-------IDTVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~---~~~~-------v~~l~~~i~~~~~ 181 (184)
....++++++||. ++.| +.+|++.+.+.+.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 1235688888876 4555 7888888887653
No 244
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.2e-17 Score=128.17 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=112.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC-----------------CCCCCCCCccceeeEE---eeCCEEEEEEeCCCccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG-----------------YSEDMIPTVGFNMRKV---TKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~-----------------~~~~~~~t~~~~~~~~---~~~~~~~~~~D~~g~~~ 76 (184)
++--+++|+-+...|||||..+++... .+.+.+-|+......+ +...+.++++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 445678999999999999999998311 1222333333222222 24459999999999999
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCce
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREV 156 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
|.....+.+.-|+++++|+|++..---+..-..+..+. .+..+|.|+||+|++.. +++++..++...+ .....
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~a-dpe~V~~q~~~lF-~~~~~ 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSA-DPERVENQLFELF-DIPPA 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCC-CHHHHHHHHHHHh-cCCcc
Confidence 99999999999999999999986433233222333332 46889999999999875 4455555443211 11233
Q ss_pred eEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 157 CCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+++.+||+.|.|+++++++|++.+.
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhCC
Confidence 6899999999999999999998875
No 245
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.75 E-value=4.2e-17 Score=126.85 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=104.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC---C--CCCCCCccceeeE-----------------Eee-------------
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY---S--EDMIPTVGFNMRK-----------------VTK------------- 61 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~---~--~~~~~t~~~~~~~-----------------~~~------------- 61 (184)
+..++|+++|+..+|||||+..|++-.. . .+..-|+...+.. ...
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 5579999999999999999999985321 1 1122232211110 000
Q ss_pred ---CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 62 ---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 62 ---~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
....+.++|+||+++|.......+..+|++++|+|+.....-...++.+ .++.... -.|+|+|+||+|+.+...
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~lg--i~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIMK--LKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHcC--CCcEEEEEecccccCHHH
Confidence 0236899999999999888778888999999999998631111112222 2222211 246899999999975433
Q ss_pred HhHHHHHcCCC--CcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 139 KEDLMEQMGLK--SITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 139 ~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
.++..+++... .......+++++||++|.|++.|++.|.+.+.
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 33333322210 11124568999999999999999999986554
No 246
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.75 E-value=7.2e-17 Score=127.45 Aligned_cols=149 Identities=23% Similarity=0.316 Sum_probs=108.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEeeCCEEEEEEeCCCcccc------hHhHHHhc--cC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRF------RSMWERYC--RA 87 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~--~~ 87 (184)
+..+|+++|+||+|||||.|++++....-...| |++.....+.....++++.|+||.... ......++ ..
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 356799999999999999999998766555444 555555556677778999999994432 22233333 45
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc----CCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA----LSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
.|+++-|+|++|.+. ++ ....++.+ .+.|++++.|.+|..+. .+.++..+.++. |++++||
T Consensus 82 ~D~ivnVvDAtnLeR--nL-yltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------PVv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLER--NL-YLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------PVVPTVA 146 (653)
T ss_pred CCEEEEEcccchHHH--HH-HHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC--------CEEEEEe
Confidence 799999999997542 11 12233333 47899999999998664 355666666665 6999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
+.|.|++++.+.+.+...
T Consensus 147 ~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 147 KRGEGLEELKRAIIELAE 164 (653)
T ss_pred ecCCCHHHHHHHHHHhcc
Confidence 999999999999987554
No 247
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.74 E-value=6.6e-17 Score=117.38 Aligned_cols=152 Identities=22% Similarity=0.225 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEeeCCEEEEEEeCCCcccc-------hHhHHHhccCCCE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~~~ 90 (184)
..++++|+|++|||||++.+++... ..-...|.......+...+..+++.|+||.-.- ....-+..+.||.
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADl 143 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADL 143 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCE
Confidence 6799999999999999999996433 233445555555667788899999999983221 2455677899999
Q ss_pred EEEEEeCCCCCC-hHHHHHHHHHHhc--CCCCCCC---------------------------------------------
Q 029978 91 IVYVVDAADYDN-LPVSRSELHDLLS--KPSLNGI--------------------------------------------- 122 (184)
Q Consensus 91 ~i~v~d~~~~~~-~~~~~~~~~~~~~--~~~~~~~--------------------------------------------- 122 (184)
+++|+|+..... ...+...+...-- ....+++
T Consensus 144 IiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~d 223 (365)
T COG1163 144 IIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRED 223 (365)
T ss_pred EEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecC
Confidence 999999987554 2233332222100 0000111
Q ss_pred -----------------cEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 123 -----------------PLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 123 -----------------piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
|.+.|.||+|+...+..+.+.+.. ..+++||+.+.|+++|.+.|.+.+.
T Consensus 224 vTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 224 VTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred CcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 999999999998754434333332 4899999999999999999998764
No 248
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.74 E-value=5.4e-17 Score=117.42 Aligned_cols=155 Identities=21% Similarity=0.302 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEeeCCE-EEEEEeCCCcccc-------hHhHHHhccCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVTKGNV-TIKLWDLGGQPRF-------RSMWERYCRAVS 89 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~-------~~~~~~~~~~~~ 89 (184)
..++++|.|++|||||++.+....- ..-..+|.......+...++ .+.+-|.||.-+- ....-..+..++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 4578999999999999999985332 11122333333334444443 3899999994321 223345567899
Q ss_pred EEEEEEeCCCC---CChHHHHHHHHHHhcC-CCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 90 AIVYVVDAADY---DNLPVSRSELHDLLSK-PSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 90 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+++|+|++.. ..++.++..+.++..+ ....+.|.++|+||+|+++.+ +...+++..... ...++++||++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~lq---~~~V~pvsA~~ 351 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRLQ---NPHVVPVSAKS 351 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHcC---CCcEEEeeecc
Confidence 99999999988 7777776666665433 334688999999999996331 222233222111 12599999999
Q ss_pred CCCHHHHHHHHHHH
Q 029978 166 STNIDTVIDWLVKH 179 (184)
Q Consensus 166 ~~~v~~l~~~i~~~ 179 (184)
+.|+.++++.+...
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999887653
No 249
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=9.4e-17 Score=123.46 Aligned_cols=158 Identities=21% Similarity=0.298 Sum_probs=116.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCC----CCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSED----MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+++--|-|.|+...|||||+..|.+...... ..+.++-....++.+ -.+.|.||||+.-|..++.+-.+..|.++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 3456688999999999999999986554322 222333333344433 58999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCC---CC-cCCCceeEEEeeeCCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL---KS-ITDREVCCYMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+.+.+. ++....+..++.+..++|+++++||+|++.. +++.+.+++.. .. ...-..+++++||++|.|
T Consensus 230 LVVAadDG-----VmpQT~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 230 LVVAADDG-----VMPQTLEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEEccCC-----ccHhHHHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 99999873 3344455555666689999999999998764 44555554432 21 223467899999999999
Q ss_pred HHHHHHHHHHHhh
Q 029978 169 IDTVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~~~ 181 (184)
++.|-+.++-...
T Consensus 304 l~~L~eaill~Ae 316 (683)
T KOG1145|consen 304 LDLLEEAILLLAE 316 (683)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999876543
No 250
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.4e-16 Score=107.32 Aligned_cols=167 Identities=28% Similarity=0.355 Sum_probs=109.4
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhcc---CC
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR---AV 88 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~ 88 (184)
+.+.....-.|.++|+.+||||+|.-++..+.....+....+ ....+..+.-.+.++|.||+++.+.....++. .+
T Consensus 31 ~~~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep-n~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~a 109 (238)
T KOG0090|consen 31 KLFRRSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP-NEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSA 109 (238)
T ss_pred HHHhhccCCcEEEEecCCCCceeeeeehhcCCccCeeeeecc-ceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccc
Confidence 333344557899999999999999999998855544332222 11222223334889999999998876666665 78
Q ss_pred CEEEEEEeCCCCC-ChHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCccCcCCHhHHHHHcC------------------
Q 029978 89 SAIVYVVDAADYD-NLPVSRSELHDLLSKP--SLNGIPLLVLGNKIDKPEALSKEDLMEQMG------------------ 147 (184)
Q Consensus 89 ~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~~~~~~~~~~~~------------------ 147 (184)
-+++||+|+.... .....-+.+-+++... +...+|+.+++||.|+.-...++.+.+.+.
T Consensus 110 kaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ 189 (238)
T KOG0090|consen 110 KAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISD 189 (238)
T ss_pred eeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 8999999996533 3333334444444332 457889999999999965544332222110
Q ss_pred -------------CCC----cCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 148 -------------LKS----ITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 148 -------------~~~----~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
..+ .......+.++|++++ +++++-+|+.+++
T Consensus 190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 010 1113467889999999 8999999998764
No 251
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.72 E-value=3.3e-16 Score=116.78 Aligned_cols=155 Identities=24% Similarity=0.325 Sum_probs=95.9
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCC------CCCCCCccceeeEE-------------------e-eCCEEEEEEeCCCc-
Q 029978 22 LSLIGLQNAGKTSLVNVIATGGYS------EDMIPTVGFNMRKV-------------------T-KGNVTIKLWDLGGQ- 74 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~~~~------~~~~~t~~~~~~~~-------------------~-~~~~~~~~~D~~g~- 74 (184)
|+++|.|++|||||++++++.... ....|+.+...... + ...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999977643 12223333222210 1 13367999999997
Q ss_pred ---ccchHhHH---HhccCCCEEEEEEeCCCC-------------CChHHHH-------HH--------HHHH-------
Q 029978 75 ---PRFRSMWE---RYCRAVSAIVYVVDAADY-------------DNLPVSR-------SE--------LHDL------- 113 (184)
Q Consensus 75 ---~~~~~~~~---~~~~~~~~~i~v~d~~~~-------------~~~~~~~-------~~--------~~~~------- 113 (184)
++...+-. ..++.+|++++|+|++.. +....+. .| +..+
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333323 358999999999999731 1111110 00 0000
Q ss_pred -------------------------hcC-C--------------------CCCCCcEEEEeeCCCccCcCCHhHHHHHcC
Q 029978 114 -------------------------LSK-P--------------------SLNGIPLLVLGNKIDKPEALSKEDLMEQMG 147 (184)
Q Consensus 114 -------------------------~~~-~--------------------~~~~~piilv~nK~D~~~~~~~~~~~~~~~ 147 (184)
+.. . ....+|+|+|+||+|+... ++..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~---~~~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA---ENNISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh---HHHHHHHH
Confidence 000 0 0234699999999997543 33333222
Q ss_pred CCCcCCCceeEEEeeeCCCCCHHHHHH-HHHHHhhh
Q 029978 148 LKSITDREVCCYMISCKNSTNIDTVID-WLVKHSKS 182 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~-~i~~~~~~ 182 (184)
.. ....+++++||+.+.+++++.+ .+.+++.+
T Consensus 238 ~~---~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 238 LK---YPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred hh---CCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 11 1244699999999999999998 68888753
No 252
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.72 E-value=3.1e-16 Score=128.47 Aligned_cols=144 Identities=18% Similarity=0.134 Sum_probs=95.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--C------CC------------CCCCCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--Y------SE------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--~------~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
.+-.+|+|+|++++|||||+++|+... . .. ....|+......+.+.+..+.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 344689999999999999999997311 1 00 122333444556777889999999999998
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCce
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREV 156 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+.......++.+|++++|+|+.+....+. ...+..+ .. .++|+++|+||+|+.... .++..+.+..........
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~ 161 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQA-NR---YEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLGANAVP 161 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHH-HH---cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCcee
Confidence 88888889999999999999987544332 2223322 22 468999999999998643 233333332211112222
Q ss_pred eEEEeeeCCC
Q 029978 157 CCYMISCKNS 166 (184)
Q Consensus 157 ~~~~~Sa~~~ 166 (184)
..+++|+..+
T Consensus 162 ~~ipis~~~~ 171 (689)
T TIGR00484 162 IQLPIGAEDN 171 (689)
T ss_pred EEeccccCCC
Confidence 3556666554
No 253
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=9.1e-17 Score=120.16 Aligned_cols=153 Identities=20% Similarity=0.168 Sum_probs=103.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc---------------------C------------CCCCCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT---------------------G------------GYSEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~---------------------~------------~~~~~~~~t~~~~~~~~~~~~ 63 (184)
+..++++++|+..+|||||+-+|+- . ....+.+-|+......+....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 5679999999999999999999981 0 112233345555555677777
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC---C--hHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---N--LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
+.+.++|+||+.+|-...-.-...+|+.|+|+|+.+.+ + .....+....+..... -..+|+++||+|..+-..
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~wde 162 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEcccccccCH
Confidence 89999999999999888888889999999999998763 1 1111122222222211 346889999999986321
Q ss_pred ------HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 139 ------KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 139 ------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
..++...+.........++|+++|+..|.|+.+
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 122222222222233357899999999999754
No 254
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.70 E-value=3.5e-19 Score=119.11 Aligned_cols=161 Identities=24% Similarity=0.284 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--Ee---eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+++.++|..|+|||+++.++....+..-+..|++..... .. ..-+++++||.+||+++..+..-+++.+++..+|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 789999999999999999999888887788888755432 22 2336789999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhc---CCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLS---KPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~---~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
||+++.-.|....+|..++-. ......+|+++..||+|+..... .+....+.....-+....++++|+|.+.|+++
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~-~~~~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK-NEATRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhh-hhhHHHHHHHHhccCccceeeeccccccChhH
Confidence 999999999999899887743 34556789999999999876422 11112222211222334689999999999999
Q ss_pred HHHHHHHHhh
Q 029978 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
.-+.+++.+.
T Consensus 185 a~r~lVe~~l 194 (229)
T KOG4423|consen 185 AQRELVEKIL 194 (229)
T ss_pred HHHHHHHHHH
Confidence 9999887764
No 255
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=1.9e-16 Score=120.10 Aligned_cols=154 Identities=20% Similarity=0.240 Sum_probs=113.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcC-----------------CCCCCCCCCccceeeE-----EeeCCEEEEEEeCCCccc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATG-----------------GYSEDMIPTVGFNMRK-----VTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~-----------------~~~~~~~~t~~~~~~~-----~~~~~~~~~~~D~~g~~~ 76 (184)
--+.+|+-+-..|||||..+++.. ....+.+-|+...... .++..+.++++|||||.+
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 356789999999999999999831 1223333444422222 233569999999999999
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCCCCcCC
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLKSITD 153 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~~ 153 (184)
|.-...+.+..|.++++++|++..-.-+.+-..+..+- .+.-+|-|+||+|++..+. .+++.+.+++...
T Consensus 89 FsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~-- 161 (603)
T COG0481 89 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS-- 161 (603)
T ss_pred eEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc--
Confidence 98888888899999999999997544444444444443 4678999999999987643 3456666666543
Q ss_pred CceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 154 REVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
..+.+|||+|.||+++++.|++.+..
T Consensus 162 ---dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 162 ---DAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred ---hheeEecccCCCHHHHHHHHHhhCCC
Confidence 37889999999999999999988753
No 256
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.70 E-value=3.4e-16 Score=100.89 Aligned_cols=103 Identities=23% Similarity=0.273 Sum_probs=69.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccc---------hHhHHHhccCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF---------RSMWERYCRAV 88 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~~ 88 (184)
+|+++|.+|+|||||++++++... ......|.......+...+..+.++||||.... .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 689999999999999999997432 233344444444455667788899999995321 11233344889
Q ss_pred CEEEEEEeCCCCCChHHHHHHH-HHHhcCCCCCCCcEEEEeeC
Q 029978 89 SAIVYVVDAADYDNLPVSRSEL-HDLLSKPSLNGIPLLVLGNK 130 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~piilv~nK 130 (184)
|++++|+|..++ .......+ ..+ . .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~--~~~~~~~~~~~l----~-~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNP--ITEDDKNILREL----K-NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSH--SHHHHHHHHHHH----H-TTSEEEEEEES
T ss_pred CEEEEEEECCCC--CCHHHHHHHHHH----h-cCCCEEEEEcC
Confidence 999999997762 12222222 333 2 57999999998
No 257
>COG2262 HflX GTPases [General function prediction only]
Probab=99.70 E-value=3e-15 Score=112.09 Aligned_cols=155 Identities=23% Similarity=0.319 Sum_probs=108.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEeeC-CEEEEEEeCCCcccc--hHhHH------Hhcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPRF--RSMWE------RYCR 86 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~--~~~~~------~~~~ 86 (184)
.-..|+++|=.|+|||||+|.+++... ......|........... ...+.+-||.|.-+. ..+.. .-..
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~ 270 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK 270 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence 347899999999999999999996554 344566777667666555 478899999994321 11111 2246
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.+|.++.|+|++++.....+... ..++.......+|+|+|.||+|+..... ....+.... ...+.+||++|
T Consensus 271 ~aDlllhVVDaSdp~~~~~~~~v-~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~~-----~~~v~iSA~~~ 341 (411)
T COG2262 271 EADLLLHVVDASDPEILEKLEAV-EDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERGS-----PNPVFISAKTG 341 (411)
T ss_pred cCCEEEEEeecCChhHHHHHHHH-HHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhhcC-----CCeEEEEeccC
Confidence 78999999999998544444333 3344444446699999999999876533 222221111 14788999999
Q ss_pred CCHHHHHHHHHHHhh
Q 029978 167 TNIDTVIDWLVKHSK 181 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~ 181 (184)
.|++.|.+.|...+.
T Consensus 342 ~gl~~L~~~i~~~l~ 356 (411)
T COG2262 342 EGLDLLRERIIELLS 356 (411)
T ss_pred cCHHHHHHHHHHHhh
Confidence 999999999998876
No 258
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.69 E-value=9.3e-16 Score=114.91 Aligned_cols=130 Identities=22% Similarity=0.321 Sum_probs=96.7
Q ss_pred cceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC----------CChHHHHHHHHHHhcCCCCCCC
Q 029978 53 GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY----------DNLPVSRSELHDLLSKPSLNGI 122 (184)
Q Consensus 53 ~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 122 (184)
+.....+..+++.+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....+..++......++
T Consensus 150 Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~ 229 (317)
T cd00066 150 GIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANT 229 (317)
T ss_pred CeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCC
Confidence 333444556678899999999999999999999999999999999985 3456666777788877666889
Q ss_pred cEEEEeeCCCccCc------------------CCHhHHHHHcC-----CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 123 PLLVLGNKIDKPEA------------------LSKEDLMEQMG-----LKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 123 piilv~nK~D~~~~------------------~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
|+++++||.|+..+ .+.++..+-+. ......+.+..+.++|.+-.+++.+|+.+.+.
T Consensus 230 pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~ 309 (317)
T cd00066 230 SIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDI 309 (317)
T ss_pred CEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHH
Confidence 99999999996542 11222222111 11112355677789999999999999999888
Q ss_pred hhh
Q 029978 180 SKS 182 (184)
Q Consensus 180 ~~~ 182 (184)
+.+
T Consensus 310 i~~ 312 (317)
T cd00066 310 ILQ 312 (317)
T ss_pred HHH
Confidence 764
No 259
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.69 E-value=5e-17 Score=111.07 Aligned_cols=121 Identities=26% Similarity=0.305 Sum_probs=70.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE-eeCCEEEEEEeCCCcccchHhHHHh---ccCCCEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV-TKGNVTIKLWDLGGQPRFRSMWERY---CRAVSAIVYV 94 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~---~~~~~~~i~v 94 (184)
.-.|+++|++|+|||+|..+|..+................+ ......+.++|+||+++.+...... ...+.++|||
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfv 82 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFV 82 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEE
Confidence 44689999999999999999998855443332211111111 1233468999999999987655544 7889999999
Q ss_pred EeCCCC-CChHHHHHHHHHHhcC--CCCCCCcEEEEeeCCCccCcCCH
Q 029978 95 VDAADY-DNLPVSRSELHDLLSK--PSLNGIPLLVLGNKIDKPEALSK 139 (184)
Q Consensus 95 ~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~ 139 (184)
+|++.. ..+...-+.+..++.. .....+|+++++||.|+.....+
T Consensus 83 vDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~ 130 (181)
T PF09439_consen 83 VDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPP 130 (181)
T ss_dssp EETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---H
T ss_pred EeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCH
Confidence 999741 2223333333333221 22368999999999999776443
No 260
>PRK12739 elongation factor G; Reviewed
Probab=99.69 E-value=6.8e-16 Score=126.47 Aligned_cols=145 Identities=19% Similarity=0.126 Sum_probs=96.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcC--CC------C------------CCCCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATG--GY------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~--~~------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
..+-.+|+|+|++++|||||+++++.. .. . .+...|+......+.+.+..+.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 345578999999999999999999731 10 1 123345555556677888999999999999
Q ss_pred cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCc
Q 029978 76 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDRE 155 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
++.......++.+|++++|+|+.....-+. ...+..+.. .++|+|+++||+|+.... .++..+++.........
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~----~~~p~iv~iNK~D~~~~~-~~~~~~~i~~~l~~~~~ 158 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK----YGVPRIVFVNKMDRIGAD-FFRSVEQIKDRLGANAV 158 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCce
Confidence 888888899999999999999987532221 122222222 468999999999998643 33343433222111122
Q ss_pred eeEEEeeeCCC
Q 029978 156 VCCYMISCKNS 166 (184)
Q Consensus 156 ~~~~~~Sa~~~ 166 (184)
...+++|+..+
T Consensus 159 ~~~iPis~~~~ 169 (691)
T PRK12739 159 PIQLPIGAEDD 169 (691)
T ss_pred eEEeccccccc
Confidence 23455666543
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.68 E-value=2.5e-15 Score=105.60 Aligned_cols=162 Identities=15% Similarity=0.062 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC-CC---CCCCccceeeEEeeCCEEEEEEeCCCcccc-------hHh----HHHh
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS-ED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSM----WERY 84 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~-~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~----~~~~ 84 (184)
++|+++|.+|+|||||+|.+++.... .. ...|...........+..+.++||||.... ... ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 47999999999999999999976432 22 233444444455567789999999994332 111 1222
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccCcCCHhHHHHHcCC--CCc-CCCceeEEE
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEALSKEDLMEQMGL--KSI-TDREVCCYM 160 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~ 160 (184)
..+.|++++|+++.... ......+..+..... ..-.++++|.|+.|.......++....... ... ....-.++.
T Consensus 81 ~~g~~~illVi~~~~~t--~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFT--EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcC--HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 46789999999987622 111222222222111 122588999999998765443333222210 000 000111222
Q ss_pred e-----eeCCCCCHHHHHHHHHHHhhhc
Q 029978 161 I-----SCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 161 ~-----Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
. |+.++.++++|++.|.+.+.++
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 2 3567889999999999988763
No 262
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=4.6e-15 Score=113.03 Aligned_cols=166 Identities=17% Similarity=0.145 Sum_probs=109.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCccc-c--------hHhHHH
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-F--------RSMWER 83 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-~--------~~~~~~ 83 (184)
.+.+++|+|+|+||+|||||+|.|.+.+. .+..+.|.+.....++...+.+.+.||+|..+ - ......
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 36679999999999999999999997654 46666677666666778889999999999543 1 122344
Q ss_pred hccCCCEEEEEEeCC--CCCChHHHHHHHHHHhcC-----CCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCc
Q 029978 84 YCRAVSAIVYVVDAA--DYDNLPVSRSELHDLLSK-----PSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDRE 155 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~--~~~~~~~~~~~~~~~~~~-----~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~ 155 (184)
.+..+|++++|+|+. ..++-..+...+...... .+....|+|++.||+|+..... .......+-...-....
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF 424 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence 577899999999993 333333333333332211 2224579999999999976411 11100000000111122
Q ss_pred eeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 156 VCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 156 ~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
....++||+++.|++.|.+.+.+.+.
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHH
Confidence 34556999999999999999987754
No 263
>PRK12740 elongation factor G; Reviewed
Probab=99.67 E-value=2.9e-15 Score=122.72 Aligned_cols=107 Identities=23% Similarity=0.224 Sum_probs=78.5
Q ss_pred EcCCCCChHHHHHHHHcCCC--------------------CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHh
Q 029978 25 IGLQNAGKTSLVNVIATGGY--------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY 84 (184)
Q Consensus 25 iG~~g~GKStli~~l~~~~~--------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 84 (184)
+|++++|||||+++|+...- ..+...|+......+.+.++.+.+|||||+.++.......
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 69999999999999963210 0112334444555677788999999999999888888888
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
++.+|++++++|++........ ..+..+.. .++|+++|+||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 9999999999999876544332 22232222 46899999999998754
No 264
>PRK09866 hypothetical protein; Provisional
Probab=99.67 E-value=6e-15 Score=116.67 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=72.1
Q ss_pred EEEEEeCCCcccc-----hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-
Q 029978 65 TIKLWDLGGQPRF-----RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS- 138 (184)
Q Consensus 65 ~~~~~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~- 138 (184)
.+.+.||||.... .......+..+|++++|+|.....+... ......+.... ...|+++|+||+|+.+...
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCcccc
Confidence 5778999996431 2234457899999999999987433222 22233332211 2359999999999864322
Q ss_pred -HhHHHHHcCCC--CcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 139 -KEDLMEQMGLK--SITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 139 -~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
.+.+.+.+... ........++++||+.|.|++.+++.|.+
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 34444432211 11223457999999999999999999986
No 265
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.67 E-value=1.6e-15 Score=114.56 Aligned_cols=128 Identities=19% Similarity=0.288 Sum_probs=95.2
Q ss_pred eeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC----------ChHHHHHHHHHHhcCCCCCCCcE
Q 029978 55 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD----------NLPVSRSELHDLLSKPSLNGIPL 124 (184)
Q Consensus 55 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~pi 124 (184)
....+...+..+.+||.+|+...+..|..++..++++++|+|+++.+ .+......+..++......++|+
T Consensus 175 ~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~pi 254 (342)
T smart00275 175 QETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSI 254 (342)
T ss_pred EEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcE
Confidence 33345556678999999999999999999999999999999999753 46666677888887777788999
Q ss_pred EEEeeCCCccCcC-----------------CHhHHHHHcC-----CCCc-CCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 125 LVLGNKIDKPEAL-----------------SKEDLMEQMG-----LKSI-TDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 125 ilv~nK~D~~~~~-----------------~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
++++||.|+.... +.++..+-+. .... ..+.+..+.++|.+-.++..+|+.+.+.+.
T Consensus 255 il~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~ 334 (342)
T smart00275 255 ILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIIL 334 (342)
T ss_pred EEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHH
Confidence 9999999985431 1222222111 1111 234567778999999999999999888765
Q ss_pred h
Q 029978 182 S 182 (184)
Q Consensus 182 ~ 182 (184)
+
T Consensus 335 ~ 335 (342)
T smart00275 335 Q 335 (342)
T ss_pred H
Confidence 4
No 266
>PRK00007 elongation factor G; Reviewed
Probab=99.66 E-value=1.5e-15 Score=124.36 Aligned_cols=144 Identities=18% Similarity=0.132 Sum_probs=95.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc--CCC------C------------CCCCCCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT--GGY------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~--~~~------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
.+-.+|+|+|++++|||||+++|+. +.. . .+...|+......+.+.+..++++||||+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 3446899999999999999999973 211 1 1222344444455677889999999999998
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCce
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREV 156 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+.......++.+|++++|+|+...-..+. ...+..+.. .++|+|+++||+|+.... ..+..+.+..........
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~~~~~~ 161 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLGANPVP 161 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCeee
Confidence 88888888899999999999876432222 222232222 468999999999998643 344444443222222233
Q ss_pred eEEEeeeCCC
Q 029978 157 CCYMISCKNS 166 (184)
Q Consensus 157 ~~~~~Sa~~~ 166 (184)
..+++|+..+
T Consensus 162 ~~ipisa~~~ 171 (693)
T PRK00007 162 IQLPIGAEDD 171 (693)
T ss_pred EEecCccCCc
Confidence 4566666655
No 267
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.66 E-value=2.7e-15 Score=109.80 Aligned_cols=159 Identities=23% Similarity=0.283 Sum_probs=103.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEe-eCCEEEEEEeCCCccc-------chHhHHHhccCCCE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVT-KGNVTIKLWDLGGQPR-------FRSMWERYCRAVSA 90 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~~~ 90 (184)
.|+++|.|++|||||++.+....- ..-+..|.......+. ...-.+.+-|.||.-. .....-..+..+.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 478999999999999999985432 2223344444443333 3445689999998322 12233455677899
Q ss_pred EEEEEeCCCCCC---hHHHHHHHHHHhcC-CCCCCCcEEEEeeCCCccCc-CCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 91 IVYVVDAADYDN---LPVSRSELHDLLSK-PSLNGIPLLVLGNKIDKPEA-LSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 91 ~i~v~d~~~~~~---~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++.|+|++..+. .........++..+ ....++|.++|+||+|+... +..++..+.+.....+ ...++ +||.+
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~--~~~~~-ISa~t 317 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGW--EVFYL-ISALT 317 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCC--Cccee-eehhc
Confidence 999999986653 44444444555443 44468999999999996543 3333333333322111 11222 99999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 029978 166 STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~~ 182 (184)
+.|+++|...+.+++.+
T Consensus 318 ~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 318 REGLDELLRALAELLEE 334 (369)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 99999999999988765
No 268
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.65 E-value=5.5e-16 Score=110.37 Aligned_cols=157 Identities=21% Similarity=0.333 Sum_probs=94.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCC---CCCCccceeeEEe-eCCEEEEEEeCCCcccchH-----hHHHhccCCCEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSED---MIPTVGFNMRKVT-KGNVTIKLWDLGGQPRFRS-----MWERYCRAVSAI 91 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~---~~~t~~~~~~~~~-~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~~~~ 91 (184)
||+++|+.||||||+.+.+..+-.+.+ ..+|......++. .+.+.+++||.||+..+.. .....++.++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 789999999999999999986554433 3467666666664 5678999999999976543 467778999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcC--CCCCCCcEEEEeeCCCccCcCCHhHHHHHcCC------CCcCCCceeEEEeee
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSK--PSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL------KSITDREVCCYMISC 163 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~Sa 163 (184)
|+|+|+...+ +......+...... ...+++.+.+.++|+|+..+...++..+.... .......+.++.||.
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999998654 33333443332211 12368999999999999775433332222110 001111467999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 029978 164 KNSTNIDTVIDWLVKH 179 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~ 179 (184)
.+. .+-+-+..|++.
T Consensus 160 ~D~-Sly~A~S~Ivq~ 174 (232)
T PF04670_consen 160 WDE-SLYEAWSKIVQK 174 (232)
T ss_dssp TST-HHHHHHHHHHHT
T ss_pred cCc-HHHHHHHHHHHH
Confidence 884 455555555544
No 269
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.63 E-value=9.9e-16 Score=116.83 Aligned_cols=177 Identities=18% Similarity=0.157 Sum_probs=121.1
Q ss_pred hHHHHHHHHHhhc--cCCceEEEEEcCCCCChHHHHHHHHcCCCCCC--CCCCccceeeEEeeCCEEEEEEeCCCcccc-
Q 029978 3 LWEAFLNWLRSLF--FKQEMELSLIGLQNAGKTSLVNVIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF- 77 (184)
Q Consensus 3 ~~~~~~~~~~~~~--~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~- 77 (184)
+|+...+++.+++ ..+.-.++++|-|++|||||++.+........ ..+|...-..+++.....++++||||.-+.
T Consensus 150 yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~p 229 (620)
T KOG1490|consen 150 YLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRP 229 (620)
T ss_pred HHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcc
Confidence 6788889998888 45668899999999999999999987655433 344555555667777789999999994321
Q ss_pred ---hH-----hHHHhccCCCEEEEEEeCCCCCChHHHH--HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC
Q 029978 78 ---RS-----MWERYCRAVSAIVYVVDAADYDNLPVSR--SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG 147 (184)
Q Consensus 78 ---~~-----~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~ 147 (184)
++ .+....+--.+++++.|++....+.-.. +.+..+. ....+.|.|+|+||+|....++.++-.+++-
T Consensus 230 lEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIK--pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll 307 (620)
T KOG1490|consen 230 EEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIK--PLFANKVTILVLNKIDAMRPEDLDQKNQELL 307 (620)
T ss_pred hhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhH--HHhcCCceEEEeecccccCccccCHHHHHHH
Confidence 11 1223345556899999998766544333 3344442 2235899999999999987655433332222
Q ss_pred CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 148 LKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
........++++++|+.+..||-++.......+.
T Consensus 308 ~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 308 QTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred HHHHhccCceEEEecccchhceeeHHHHHHHHHH
Confidence 1122223467999999999999887766665543
No 270
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.62 E-value=5.1e-15 Score=110.63 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=69.2
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh-
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE- 140 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~- 140 (184)
..+.+.++||+|....... ....+|.++++.+....+.++... ..++. +..++|+||+|+......+
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHH
Confidence 3568999999997643322 355699999997644433333322 22222 2348999999987654333
Q ss_pred ---HHHHHcCCCCcC--CCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 141 ---DLMEQMGLKSIT--DREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 141 ---~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
++.+.+.+.... ....+++.+||+++.|+++|++.|.++..
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 333333332211 12357999999999999999999998754
No 271
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1.1e-14 Score=103.92 Aligned_cols=166 Identities=17% Similarity=0.221 Sum_probs=106.3
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCC--CCCcc-ceeeEEeeCCEEEEEEeCCCccc-------chHhHH
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDM--IPTVG-FNMRKVTKGNVTIKLWDLGGQPR-------FRSMWE 82 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~ 82 (184)
.+..++++++.+.|..|+|||||+|++..+...+.. ..+.. ..........-.+.+||+||-++ ++....
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHH
Confidence 344567899999999999999999999965443222 21111 11111222334699999999554 566777
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC------------CHhHHHHHcCC--
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL------------SKEDLMEQMGL-- 148 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~------------~~~~~~~~~~~-- 148 (184)
.++...|.++++.++.+++--.. ...+.++.... -+.|+++++|.+|....- ..++..+....
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred HHhhhccEEEEeccCCCccccCC-HHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 88899999999999988652222 23344443322 248999999999985431 11111111110
Q ss_pred CCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 149 KSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 149 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
......--|++..|...++|++.+...++..+.
T Consensus 190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 000111236888889999999999999998764
No 272
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.62 E-value=1.4e-14 Score=111.08 Aligned_cols=79 Identities=25% Similarity=0.409 Sum_probs=53.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC-CC-CCC----ccceeeEE-------------------e-eCCEEEEEEeCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSE-DM-IPT----VGFNMRKV-------------------T-KGNVTIKLWDLGG 73 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~-~~-~~t----~~~~~~~~-------------------~-~~~~~~~~~D~~g 73 (184)
++|+|+|.|++|||||++++++..+.. .+ ..| .+...... + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999776542 22 222 22211100 0 1236789999999
Q ss_pred c----ccchHh---HHHhccCCCEEEEEEeCC
Q 029978 74 Q----PRFRSM---WERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 74 ~----~~~~~~---~~~~~~~~~~~i~v~d~~ 98 (184)
. +....+ ....++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 222222 333488999999999997
No 273
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.60 E-value=1.4e-14 Score=109.82 Aligned_cols=159 Identities=24% Similarity=0.332 Sum_probs=108.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCC--CCC----------------CCCCCccceeeEEeeCCEEEEEEeCCCcccchHh
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGG--YSE----------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
--+|+|+-+...|||||+..++..+ |.. +..-|+-..-.-+.+.+.++++.||||+.+|.-.
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3579999999999999999999432 211 1111111111125677899999999999999999
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC----CCC-cCCCc
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG----LKS-ITDRE 155 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~----~~~-~~~~~ 155 (184)
..+.+.=.|.+++++|+.+.. ...-+..+...+. .+.+-|+|+||+|.+.....+-+.+-.. +.. ..+..
T Consensus 85 VERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 999999999999999998642 2223333343333 3567789999999987643222222111 111 11245
Q ss_pred eeEEEeeeCCCC----------CHHHHHHHHHHHhhh
Q 029978 156 VCCYMISCKNST----------NIDTVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~~~~----------~v~~l~~~i~~~~~~ 182 (184)
+|++..|+++|. ++..||+.|++++..
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 789999999863 689999999998764
No 274
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.60 E-value=1.2e-14 Score=91.53 Aligned_cols=138 Identities=15% Similarity=0.157 Sum_probs=90.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCC----cccchHhHHHhccCCCEEEEEEe
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----QPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+++++|..|+|||||.+++.+.....+..+. +++.. =..+|||| +..+++........+|+++++-+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQA-------ve~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQA-------VEFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccce-------eeccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 7899999999999999999854322211111 11110 11459998 33444445555678899999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
++++++--.. . .......|+|=|+||.|+.+..+.+...+.+.+... -++|++|+.++.|++++++.+
T Consensus 74 and~~s~f~p-----~---f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa----~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 74 ANDPESRFPP-----G---FLDIGVKKVIGVVTKADLAEDADISLVKRWLREAGA----EPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred ccCccccCCc-----c---cccccccceEEEEecccccchHhHHHHHHHHHHcCC----cceEEEeccCcccHHHHHHHH
Confidence 9987642211 1 112245679999999999865444433333332221 159999999999999999988
Q ss_pred HHH
Q 029978 177 VKH 179 (184)
Q Consensus 177 ~~~ 179 (184)
...
T Consensus 142 ~~~ 144 (148)
T COG4917 142 ASL 144 (148)
T ss_pred Hhh
Confidence 653
No 275
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=4.3e-15 Score=107.88 Aligned_cols=161 Identities=18% Similarity=0.194 Sum_probs=109.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC---CC--CCCCCCccceeeE--------------------E--e----eCCEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG---YS--EDMIPTVGFNMRK--------------------V--T----KGNVT 65 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~---~~--~~~~~t~~~~~~~--------------------~--~----~~~~~ 65 (184)
+..++|+.+|+...|||||...+.+-- +. -+..-|+...+.. . . .--.+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 678999999999999999999998311 11 1111122111100 0 0 01146
Q ss_pred EEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHH--HHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHH
Q 029978 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSEL--HDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLM 143 (184)
Q Consensus 66 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~ 143 (184)
+.|.|.||++-......+-..-.|++++|++++.+..=..-.+.+ .++.. -..+++|-||+|+...+.+.+..
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig-----ik~iiIvQNKIDlV~~E~AlE~y 162 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG-----IKNIIIVQNKIDLVSRERALENY 162 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc-----cceEEEEecccceecHHHHHHHH
Confidence 899999999988877666667779999999998765433323322 23332 25689999999998875555555
Q ss_pred HHcCC--CCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 144 EQMGL--KSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 144 ~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+++.. +.....+.|++++||..+.|++.|++.|.+.+..
T Consensus 163 ~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 163 EQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 54432 2334557799999999999999999999998763
No 276
>PRK13768 GTPase; Provisional
Probab=99.59 E-value=3.8e-15 Score=108.29 Aligned_cols=116 Identities=20% Similarity=0.102 Sum_probs=72.9
Q ss_pred EEEEEeCCCcccch---HhHHHh---ccC--CCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 65 TIKLWDLGGQPRFR---SMWERY---CRA--VSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 65 ~~~~~D~~g~~~~~---~~~~~~---~~~--~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
.+.+||+||+.... .....+ +.. .+++++++|+........... ++....... ..++|+++|+||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 68899999976532 222222 222 789999999976443333222 222211111 14789999999999987
Q ss_pred cCCHhHHHHHcCC--------CC-----------------cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 136 ALSKEDLMEQMGL--------KS-----------------ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 136 ~~~~~~~~~~~~~--------~~-----------------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
....++..+.+.. .. ......+++++|++++.|+++++++|.+.+.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 6554444333321 00 0112346899999999999999999988764
No 277
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.58 E-value=1.6e-14 Score=106.13 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=101.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC-----------------------------------CCCCCCCCccceeeEEee
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG-----------------------------------YSEDMIPTVGFNMRKVTK 61 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~-----------------------------------~~~~~~~t~~~~~~~~~~ 61 (184)
+..++.+-+|...-||||||-+|+.+. .+.+.+-|+...+..+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 456889999999999999999998221 123334455566666667
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--H
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--K 139 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~ 139 (184)
.+.++.+.||||+++|-..+..-...||++|+++|+.. .....-+....+..... =..+++++||+|+.+... -
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLG--IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLG--IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhC--CcEEEEEEeeecccccCHHHH
Confidence 78899999999999998888888899999999999964 33322222222222211 246899999999987533 2
Q ss_pred hHHHHHcCCC--CcCCCceeEEEeeeCCCCCHH
Q 029978 140 EDLMEQMGLK--SITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 140 ~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+++.+++... ........++|+||+.|.||-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 2332222100 011123369999999999874
No 278
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.58 E-value=3e-14 Score=104.79 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=68.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCC----------CCCCccceee--EEeeC--CEEEEEEeCCCcccchH----
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSED----------MIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRS---- 79 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~----------~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~---- 79 (184)
..++|+++|++|+|||||++++.+..+... ..+|...... .+... .+.+.+|||||..+...
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 358999999999999999999998765433 2333332222 22222 36799999999432210
Q ss_pred -----------------hHH-----Hhcc--CCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 80 -----------------MWE-----RYCR--AVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 80 -----------------~~~-----~~~~--~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
... ..+. .+|+++++++.+.. ...... ..+..+. ..+|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcC
Confidence 000 1222 46778888887642 222221 2222222 258999999999996
Q ss_pred C
Q 029978 135 E 135 (184)
Q Consensus 135 ~ 135 (184)
.
T Consensus 157 ~ 157 (276)
T cd01850 157 T 157 (276)
T ss_pred C
Confidence 5
No 279
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.56 E-value=5.9e-14 Score=115.54 Aligned_cols=113 Identities=21% Similarity=0.229 Sum_probs=79.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC---------------CCCC---CCCCCccceee----EEeeCCEEEEEEeCCCcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG---------------GYSE---DMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~---------------~~~~---~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~ 75 (184)
.-.+|+++|+.++|||||+++++.. .+.. +...|+..... .+++.++.+++|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 3479999999999999999999742 1111 12234433222 245677999999999999
Q ss_pred cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 76 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
++.......++.+|++++|+|+......+. ...+..... .+.|+++|+||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 998888889999999999999976422221 122222222 4578899999999864
No 280
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.56 E-value=9.4e-14 Score=99.45 Aligned_cols=143 Identities=11% Similarity=0.128 Sum_probs=84.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..++..|+++|++|+|||||++.+.+...........+. .......+..+.++||||.. .........+|++++++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllvi 111 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI---NAMIDIAKVADLVLLLI 111 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH---HHHHHHHHhcCEEEEEE
Confidence 355688999999999999999999854222111111111 11122356788999999864 22234467899999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCccCcCC-HhHHHHHcCCCCc--CCCceeEEEeeeCCCC
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDKPEALS-KEDLMEQMGLKSI--TDREVCCYMISCKNST 167 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~ 167 (184)
|++...... ...+..+... .+.|. ++|+||+|+.+... .++..+.+..... .....+++++||++..
T Consensus 112 Da~~~~~~~--~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 112 DASFGFEME--TFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred ecCcCCCHH--HHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 997643322 2222333222 34675 45999999974321 2233322221111 1234579999999863
No 281
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.55 E-value=2.2e-13 Score=114.31 Aligned_cols=145 Identities=19% Similarity=0.202 Sum_probs=90.8
Q ss_pred ChHHHHHHHHcCCCCCCC----CCCccceeeEEeeC-----------C-----EEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 31 GKTSLVNVIATGGYSEDM----IPTVGFNMRKVTKG-----------N-----VTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 31 GKStli~~l~~~~~~~~~----~~t~~~~~~~~~~~-----------~-----~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
+||||+.++.+......- .+.++....+.+.. . -.+.+|||||++.+..+.......+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 599999999865543221 12222222222210 0 138999999999998888888889999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC------------------HhHHH---------
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS------------------KEDLM--------- 143 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~------------------~~~~~--------- 143 (184)
+++|+|+++.- .........++.. .++|+++|+||+|+.+... .+++.
T Consensus 553 vlLVVDa~~Gi--~~qT~e~I~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~ 627 (1049)
T PRK14845 553 AVLVVDINEGF--KPQTIEAINILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK 627 (1049)
T ss_pred EEEEEECcccC--CHhHHHHHHHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence 99999998632 1111111122222 3689999999999964211 01111
Q ss_pred -HHcCCCC-------cCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 144 -EQMGLKS-------ITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 144 -~~~~~~~-------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
...+... ......+++++||++|.|+++|++.+....
T Consensus 628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 1112111 123467899999999999999999886543
No 282
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.55 E-value=1.3e-13 Score=113.66 Aligned_cols=126 Identities=23% Similarity=0.245 Sum_probs=83.5
Q ss_pred HHHHHHHHhhccC--CceEEEEEcCCCCChHHHHHHHHcCC-C-CCC----------------CCCCccceeeEE----e
Q 029978 5 EAFLNWLRSLFFK--QEMELSLIGLQNAGKTSLVNVIATGG-Y-SED----------------MIPTVGFNMRKV----T 60 (184)
Q Consensus 5 ~~~~~~~~~~~~~--~~~~i~iiG~~g~GKStli~~l~~~~-~-~~~----------------~~~t~~~~~~~~----~ 60 (184)
++..+++.++..+ +-.+|+++|+.++|||||+.+++... . ... ..-|+......+ +
T Consensus 4 ~~~~~~~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~ 83 (731)
T PRK07560 4 KKMVEKILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYE 83 (731)
T ss_pred hHHHHHHHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEec
Confidence 4455566555444 23579999999999999999998421 1 100 011222222222 2
Q ss_pred eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
..++.++++||||+.++.......++.+|++++|+|+......+ ....+..... .+.|.|+++||+|...
T Consensus 84 ~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 84 GKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred CCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhhc
Confidence 24688999999999999888889999999999999987643222 2223333222 2468899999999863
No 283
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.55 E-value=1.3e-13 Score=102.71 Aligned_cols=134 Identities=19% Similarity=0.349 Sum_probs=99.6
Q ss_pred CCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCC----------hHHHHHHHHHHhcCCC
Q 029978 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN----------LPVSRSELHDLLSKPS 118 (184)
Q Consensus 49 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------~~~~~~~~~~~~~~~~ 118 (184)
.+|.|.....+..++..+.++|.+||..-+..|...+.++++++||+++++.+- +.+....+..+.+...
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 345555666677788899999999999889999999999999999999997642 3344456778888888
Q ss_pred CCCCcEEEEeeCCCccCcC-----------------CHhHHHHHcC-----CCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 119 LNGIPLLVLGNKIDKPEAL-----------------SKEDLMEQMG-----LKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 119 ~~~~piilv~nK~D~~~~~-----------------~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
..+.++|++.||.|+..+. ..++..+-+. +.....+.+.+..+.|.+-.+|+.+|+.+
T Consensus 260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV 339 (354)
T ss_pred cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence 8899999999999986641 1222222211 11112245567778999999999999999
Q ss_pred HHHhhh
Q 029978 177 VKHSKS 182 (184)
Q Consensus 177 ~~~~~~ 182 (184)
.+.+.+
T Consensus 340 ~d~Ii~ 345 (354)
T KOG0082|consen 340 TDTIIQ 345 (354)
T ss_pred HHHHHH
Confidence 888764
No 284
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.52 E-value=6.2e-13 Score=93.35 Aligned_cols=103 Identities=19% Similarity=0.202 Sum_probs=64.2
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--CCHhH
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LSKED 141 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~ 141 (184)
....++++.|..-..... ...++.++.|+|+.+.+.... .... + ....-++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~---~~l~~~~i~vvD~~~~~~~~~---~~~~---q---i~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS---PELADLTIFVIDVAAGDKIPR---KGGP---G---ITRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccc---hhhhCcEEEEEEcchhhhhhh---hhHh---H---hhhccEEEEEhhhccccccccHHH
Confidence 456677888842211111 122577999999987554221 1111 1 12234899999999853 23333
Q ss_pred HHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 142 LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+.+.+... +...+++++||++|.|++++++++.+.+.
T Consensus 160 ~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 160 MERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34333322 23467999999999999999999998764
No 285
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.52 E-value=1.5e-14 Score=103.05 Aligned_cols=108 Identities=15% Similarity=0.158 Sum_probs=71.3
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-Hh
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KE 140 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~ 140 (184)
..+.+.+++|.|.-+.. -....-+|.+++|....-.+..+.+..-..++ +-++|+||.|...... ..
T Consensus 120 aG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vVNKaD~~gA~~~~~ 187 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVVNKADRPGADRTVR 187 (266)
T ss_dssp TT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE--SHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEEeCCChHHHHHHHH
Confidence 35678899998744322 23456699999999998888888776666665 3489999999765532 23
Q ss_pred HHHHHcCCCC--cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 141 DLMEQMGLKS--ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 141 ~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
++...+.+.. .....++++.+||.++.|+++|++.|.++..
T Consensus 188 ~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 188 DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3333333322 2234578999999999999999999987643
No 286
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=2.1e-13 Score=103.08 Aligned_cols=155 Identities=16% Similarity=0.111 Sum_probs=115.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC-----CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGY-----SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.|+-.|+--.|||||+..+.+... ..+...|+...+...+.++..+.|+|.||++++....-..+...|++++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 578889999999999999986543 344566777777777778889999999999999988888888999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
+.++.- +........++.... ....++|+||+|..+....++..+++..... ....+++.+|+++|.||++|.+.
T Consensus 82 ~~deGl--~~qtgEhL~iLdllg--i~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEGL--MAQTGEHLLILDLLG--IKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccCc--chhhHHHHHHHHhcC--CCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 996522 222222222222211 2345999999999876555555544432222 45567899999999999999999
Q ss_pred HHHHh
Q 029978 176 LVKHS 180 (184)
Q Consensus 176 i~~~~ 180 (184)
|.++.
T Consensus 157 l~~L~ 161 (447)
T COG3276 157 LIDLL 161 (447)
T ss_pred HHHhh
Confidence 99887
No 287
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.51 E-value=4.2e-14 Score=101.73 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=58.2
Q ss_pred EEEEEeCCCcccchHhHHHhc--------cCCCEEEEEEeCCCCCChHHHHHH-HHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 65 TIKLWDLGGQPRFRSMWERYC--------RAVSAIVYVVDAADYDNLPVSRSE-LHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 65 ~~~~~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
.+.++|||||.++...+.... ...-++++++|+.....-...... +..+.-. ...+.|.+.|.||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence 688999999987644333322 334578999999866542222222 1111111 114689999999999987
Q ss_pred cC---------CH-----------hHHHHHcCCCCcCCCce-eEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 136 AL---------SK-----------EDLMEQMGLKSITDREV-CCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 136 ~~---------~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
.. +. ....+.+.......... .++++|+.++.|+++|+..|-++.
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 21 00 11111111111111122 699999999999999999987765
No 288
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.51 E-value=1.1e-13 Score=100.10 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=74.5
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhH
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KED 141 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~ 141 (184)
.+.+.|++|.|.-+.. -....-+|.++++.-..-.+..+.+..-..++. -++|+||.|....+. ..+
T Consensus 143 G~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia---------Di~vINKaD~~~A~~a~r~ 210 (323)
T COG1703 143 GYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA---------DIIVINKADRKGAEKAARE 210 (323)
T ss_pred CCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh---------heeeEeccChhhHHHHHHH
Confidence 4679999999754433 233455898888887777777777666555553 389999999755422 234
Q ss_pred HHHHcCCCC----cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 142 LMEQMGLKS----ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 142 ~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+...+.+.. .....++++.+||..|.|+++|++.|.++.+
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 444444332 2234678999999999999999999998765
No 289
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.50 E-value=2.9e-13 Score=113.10 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=78.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC--CC----------------CCCCCccceeeEEee----------------C
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY--SE----------------DMIPTVGFNMRKVTK----------------G 62 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~--~~----------------~~~~t~~~~~~~~~~----------------~ 62 (184)
.+-.+|+|+|+.++|||||+++++...- .. +...|+......+.+ .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 3447899999999999999999984221 00 011122211112222 2
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
++.++++||||+.+|.......++.+|++++|+|+...-..+. +..+..... .++|+++++||+|+.
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 5789999999999999888898999999999999986433232 223333332 578999999999997
No 290
>PTZ00416 elongation factor 2; Provisional
Probab=99.49 E-value=1.4e-13 Score=114.71 Aligned_cols=113 Identities=21% Similarity=0.210 Sum_probs=78.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--CCC-C---------------CCCCccceeeEEeeC----------CEEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--YSE-D---------------MIPTVGFNMRKVTKG----------NVTIKL 68 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--~~~-~---------------~~~t~~~~~~~~~~~----------~~~~~~ 68 (184)
++-.+|+++|+.++|||||+++|+... ... . ...|+........+. ++.+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 445699999999999999999998521 100 0 111111111122222 578999
Q ss_pred EeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
+||||+.++.......++.+|++++|+|+...-..+. ...+..+.. .++|+|+++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence 9999999998888899999999999999987433222 233333332 468999999999997
No 291
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.2e-13 Score=104.18 Aligned_cols=115 Identities=24% Similarity=0.312 Sum_probs=85.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc-CCC-----------------------CCCCCCCccceeeEEeeCCEEEEEEeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT-GGY-----------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~-~~~-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+.-..+||.+|.+|||||-.+++- +.. ..+.+-++......++..++.+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 4456779999999999999999881 110 1112222233445677889999999999
Q ss_pred CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
|+++|..-.++.+..+|.+++|+|+... +......+..-+..+++||+=++||+|....
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG-----iE~qT~KLfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG-----IEPQTLKLFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC-----ccHHHHHHHHHHhhcCCceEEEeeccccccC
Confidence 9999999889999999999999999852 2333333333344488999999999998654
No 292
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.48 E-value=5.3e-13 Score=100.69 Aligned_cols=159 Identities=15% Similarity=0.249 Sum_probs=78.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccc-----eeeEEeeCC-EEEEEEeCCCcccchHhHHH-----hc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGF-----NMRKVTKGN-VTIKLWDLGGQPRFRSMWER-----YC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~-----~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~-----~~ 85 (184)
+..++|+|+|++|+|||||||.+.+-+-..+....++. ....+...+ -.+.+||.||.......... -+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 46799999999999999999999753322221111111 111122222 24999999996433332232 35
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCc--cCc-------CCHhHHHHHcC------CCC
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK--PEA-------LSKEDLMEQMG------LKS 150 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~--~~~-------~~~~~~~~~~~------~~~ 150 (184)
...|.+|++.+-. |....-++...++. .++|+.+|-||+|. ..+ -..+++.+.+. +..
T Consensus 113 ~~yD~fiii~s~r----f~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISSER----FTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEESSS------HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeCCC----CchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 6678777766633 33333333333333 47899999999996 111 11223322221 111
Q ss_pred cCCCceeEEEeeeCC--CCCHHHHHHHHHHHhhh
Q 029978 151 ITDREVCCYMISCKN--STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~--~~~v~~l~~~i~~~~~~ 182 (184)
..-..+++|.+|+.+ ......|.+.+.+-+..
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 222345789999987 45688888888876554
No 293
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.48 E-value=2e-13 Score=97.41 Aligned_cols=120 Identities=19% Similarity=0.147 Sum_probs=76.2
Q ss_pred EEEEEEeCCCccc-ch-----Hh-HHHhc-cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 64 VTIKLWDLGGQPR-FR-----SM-WERYC-RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 64 ~~~~~~D~~g~~~-~~-----~~-~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
+...++|||||-. |. .. ...+. ...-++++++|.....+-..........+...+..+.|.|+|.||+|..+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence 4688999999743 21 12 22222 23456888998865444344444444444444457899999999999988
Q ss_pred cCCHhHHHHHc-------CC--C--------------CcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 136 ALSKEDLMEQM-------GL--K--------------SITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 136 ~~~~~~~~~~~-------~~--~--------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
...+.+++... .. . .........+-+|+.+|.|.+++|..+.+.+.++
T Consensus 196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 75443333221 10 0 0112345688899999999999999998887653
No 294
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=4.6e-13 Score=104.04 Aligned_cols=153 Identities=20% Similarity=0.155 Sum_probs=101.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC---------------------------------CCCCCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG---------------------------------GYSEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~---------------------------------~~~~~~~~t~~~~~~~~~~~~ 63 (184)
+..++++++|+..+|||||+.+++.. ..+.+.+-|.......++...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 34588999999999999999999810 011122223333344466667
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC---ChH--HHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NLP--VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA-- 136 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~--~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-- 136 (184)
..+.+.|+||+.+|....-+-...+|+.++|+|++... +|. +..+....+++... -..+|+++||+|+.+=
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCccH
Confidence 88999999999999888888888999999999997532 121 11122222333322 3568999999999763
Q ss_pred CCHhHHHHHcC-----CCCcCCCceeEEEeeeCCCCCHHH
Q 029978 137 LSKEDLMEQMG-----LKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 137 ~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+..+++...+. ........+.|++||+..|.|+-.
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 22334433332 233445566899999999999643
No 295
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.47 E-value=2.7e-12 Score=92.98 Aligned_cols=121 Identities=15% Similarity=0.108 Sum_probs=72.8
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCC---CCCCccceeeEEeeCCEEEEEEeCCCcccch----------HhH
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR----------SMW 81 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~ 81 (184)
.....++|+++|.+|+|||||+|++++...... ...|..............+.++||||..... ...
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 335679999999999999999999997654221 1233333334445567889999999965331 012
Q ss_pred HHhcc--CCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCC-CCCCcEEEEeeCCCccCc
Q 029978 82 ERYCR--AVSAIVYVVDAADYDNLPVSR-SELHDLLSKPS-LNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 82 ~~~~~--~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~piilv~nK~D~~~~ 136 (184)
..++. ..++++++..++... +.... ..+..+..... ..-.++++|.||+|....
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 22332 567888887665422 11221 22222222111 112479999999998654
No 296
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.46 E-value=7.8e-12 Score=92.16 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=69.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC--CCC-CCCccceeeEEeeCCEEEEEEeCCCcccchH-------hHHHhc-
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS--EDM-IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS-------MWERYC- 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~--~~~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~- 85 (184)
...++|+++|.+|+||||++|++++.... ... ..+..............+.++||||..+... ....++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 35689999999999999999999976532 111 1122222223334678999999999654321 112222
Q ss_pred -cCCCEEEEEEeCCCCCChHHH-HHHHHHHhcCC-CCCCCcEEEEeeCCCccC
Q 029978 86 -RAVSAIVYVVDAADYDNLPVS-RSELHDLLSKP-SLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 86 -~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~-~~~~~piilv~nK~D~~~ 135 (184)
...|++++|.+++... +... ...+..+.... ...-.+.|+|.|+.|..+
T Consensus 116 ~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred cCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 2689999996654321 2222 12222222211 112247899999999764
No 297
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.45 E-value=7.4e-13 Score=93.79 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=83.3
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcC-CCC-------CCCCCCcc--------ceeeEEee-----------------
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATG-GYS-------EDMIPTVG--------FNMRKVTK----------------- 61 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~-~~~-------~~~~~t~~--------~~~~~~~~----------------- 61 (184)
.......|+++|+.|+|||||+++++.. ... .+...... ........
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 3344577899999999999999999742 100 00000000 00011110
Q ss_pred ---CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 62 ---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 62 ---~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
.+..+.++||.|.-... ..+....+..+.++|+.+.+... . ..... ...|.++++||+|+.+...
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~-~~~~~------~~~a~iiv~NK~Dl~~~~~ 165 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--L-KYPGM------FKEADLIVINKADLAEAVG 165 (207)
T ss_pred hccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--h-hhHhH------HhhCCEEEEEHHHccccch
Confidence 12356667777721000 11112334556677776543211 1 11111 3467899999999975422
Q ss_pred --HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 139 --KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
..+..+.+... ....+++++||+++.|++++++++.+..
T Consensus 166 ~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 166 FDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 23333332211 2345799999999999999999998764
No 298
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.44 E-value=7.1e-12 Score=93.50 Aligned_cols=107 Identities=13% Similarity=0.027 Sum_probs=65.0
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHH
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDL 142 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~ 142 (184)
.+.+.++||+|.-... ......+|.++++.... +-..+......+ ..+|.++|+||+|+.+.......
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence 5788999999854222 22455677777774433 223333333333 34778999999999765432211
Q ss_pred HHHc----C-CCC-cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 143 MEQM----G-LKS-ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 143 ~~~~----~-~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
...+ . +.. ......+++++||+++.|++++++++.+...
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 1111 1 111 1112246899999999999999999988643
No 299
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.44 E-value=8.1e-13 Score=96.43 Aligned_cols=163 Identities=19% Similarity=0.250 Sum_probs=105.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCC----EEEEEEeCCCcccchHhHHHhccCC----
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGN----VTIKLWDLGGQPRFRSMWERYCRAV---- 88 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~~D~~g~~~~~~~~~~~~~~~---- 88 (184)
+.+-+|.++|+.|+||||||.++.+.+ ..+.....++.+..+.... .++.+|-+.|+..+..+....+...
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e-~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSE-TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhccc-ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 356889999999999999999997554 4455555566666554322 4688999999877766666555432
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcC----CC----------------------------------------------
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSK----PS---------------------------------------------- 118 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~----~~---------------------------------------------- 118 (184)
-.+|+++|+++++...+....|...+.. ..
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 3588899999986544333322211100 00
Q ss_pred -----------CCCCcEEEEeeCCCccCcCCH-----hHHHHHcC---CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 119 -----------LNGIPLLVLGNKIDKPEALSK-----EDLMEQMG---LKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 119 -----------~~~~piilv~nK~D~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
..++|+++|+||+|....... ++....+. ..+........+.+|++...|++-|..+|...
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 012389999999998543221 11111111 12223345678999999999999999999876
Q ss_pred h
Q 029978 180 S 180 (184)
Q Consensus 180 ~ 180 (184)
+
T Consensus 289 ~ 289 (473)
T KOG3905|consen 289 S 289 (473)
T ss_pred h
Confidence 4
No 300
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=5.1e-13 Score=108.30 Aligned_cols=116 Identities=23% Similarity=0.238 Sum_probs=85.2
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcC--CCC------------------CCCCCCccceeeEEeeC-CEEEEEEeCCCc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATG--GYS------------------EDMIPTVGFNMRKVTKG-NVTIKLWDLGGQ 74 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~--~~~------------------~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~ 74 (184)
..+-.+|+|+|+..+|||||..+++-. ... .+..-|+........+. ++.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 345678999999999999999999821 111 11122333333456677 499999999999
Q ss_pred ccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
.+|.....+.++-+|++++|+|+...-..+. ...|... ...++|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa----~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQA----DKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHH----hhcCCCeEEEEECcccccc
Confidence 9999999999999999999999986432222 2333333 3358999999999998765
No 301
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.40 E-value=2.1e-12 Score=91.78 Aligned_cols=162 Identities=14% Similarity=0.100 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCC----CCCccceeeEEeeCCEEEEEEeCCCcccc-------hHhHH----Hh
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDM----IPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWE----RY 84 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~----~~ 84 (184)
++|+++|..|+||||++|.+++....... .-|..............+.++||||--+. ...+. ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 58999999999999999999976643222 22444444445677889999999993211 11111 23
Q ss_pred ccCCCEEEEEEeCCCCCC-hHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC---CCC-cCCCceeEE
Q 029978 85 CRAVSAIVYVVDAADYDN-LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG---LKS-ITDREVCCY 159 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---~~~-~~~~~~~~~ 159 (184)
..+.|++++|+++..... -......+..+... ..-..+|||.|..|.......++..+... +.. .....-.+.
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~--~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGE--EIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCG--GGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccH--HHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 467899999999984321 11111222333221 12246899999998877655443333110 000 000011244
Q ss_pred EeeeC------CCCCHHHHHHHHHHHhhhc
Q 029978 160 MISCK------NSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 160 ~~Sa~------~~~~v~~l~~~i~~~~~~~ 183 (184)
..+.+ +...+.+|++.|-+.+.++
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 44443 3356888999888887754
No 302
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.40 E-value=1.1e-12 Score=96.03 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=41.4
Q ss_pred CCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 120 NGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 120 ~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
...+.++|+||+|+.+.. +.++..+.+.. .....+++++||++|.|++++.++|.+.
T Consensus 229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 229 FAAASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hhcCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 346789999999997632 23444444322 2245679999999999999999999874
No 303
>PTZ00258 GTP-binding protein; Provisional
Probab=99.40 E-value=9.2e-12 Score=94.96 Aligned_cols=82 Identities=22% Similarity=0.339 Sum_probs=56.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCC--CCCCccceeeEEeeC-----------------CEEEEEEeCCCccc-
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSED--MIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPR- 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~--~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~- 76 (184)
...++|+|+|.||+|||||++.+++...... +..|.......+... +..+.++||||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 4568999999999999999999986554322 333444333333222 33589999999432
Q ss_pred ------chHhHHHhccCCCEEEEEEeCC
Q 029978 77 ------FRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 77 ------~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
........++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1223344568899999999984
No 304
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=8.7e-12 Score=91.85 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=97.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCC----CCCCC-----CCCcc--ceeeEE-------eeCCEEEEEEeCCCcccchH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGG----YSEDM-----IPTVG--FNMRKV-------TKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~----~~~~~-----~~t~~--~~~~~~-------~~~~~~~~~~D~~g~~~~~~ 79 (184)
-.++++++|+..||||||.+++..-. |...+ .-|.+ +....+ ......+.++|.||+.....
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 35899999999999999999998422 11111 11222 111111 23346789999999987766
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH----hHHHHHcC--CCC-cC
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK----EDLMEQMG--LKS-IT 152 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~--~~~-~~ 152 (184)
.+.....-.|..++|+|+....--+...- .-+.+. .-...++|+||+|..++... ++.....+ +.. ..
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEc--Liig~~---~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAEC--LIIGEL---LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchh--hhhhhh---hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 66666677789999999975322121111 111111 12457888999998765321 22222221 111 22
Q ss_pred CCceeEEEeeeCCC----CCHHHHHHHHHHHhh
Q 029978 153 DREVCCYMISCKNS----TNIDTVIDWLVKHSK 181 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~----~~v~~l~~~i~~~~~ 181 (184)
..+.|++++||++| .++.+|.+.+.+.+-
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 34578999999999 677777777776654
No 305
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.39 E-value=2.9e-13 Score=87.95 Aligned_cols=114 Identities=15% Similarity=0.108 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCC-CCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
+|++++|..|+|||+|+.++....+...+. +|.+ +......+.+.++.++.|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 489999999999999999998777765544 4443 2222234556789999999999
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 99 DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+.+++... |...+.... ..+.|.++++||.|+.... +..+.. ...++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~---~~~~~~--------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEER---QVATEE--------GLEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhC---cCCHHH--------HHHHHHHhCCCcchhh
Confidence 88877654 444444332 3578999999999984321 111111 1136678999999885
No 306
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.32 E-value=3.8e-12 Score=98.26 Aligned_cols=122 Identities=23% Similarity=0.386 Sum_probs=88.6
Q ss_pred Eee-CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC----------ChHHHHHHHHHHhcCCCCCCCcEEEE
Q 029978 59 VTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD----------NLPVSRSELHDLLSKPSLNGIPLLVL 127 (184)
Q Consensus 59 ~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~piilv 127 (184)
+.. +...+.++|++|+...+..|..++.+.++++||+++++.+ .+.+....+..+.......++|+||+
T Consensus 230 f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~ 309 (389)
T PF00503_consen 230 FNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILF 309 (389)
T ss_dssp EEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEE
T ss_pred EEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEe
Confidence 444 6678899999999988999999999999999999998643 24555667788888777779999999
Q ss_pred eeCCCccCc--------------------CCHhHHHHHcC-----CCCcCC--CceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 128 GNKIDKPEA--------------------LSKEDLMEQMG-----LKSITD--REVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 128 ~nK~D~~~~--------------------~~~~~~~~~~~-----~~~~~~--~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
.||.|+..+ .+.+...+.+. ...... +.+.++.++|.+..+++.+|+.+.+.+
T Consensus 310 lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 310 LNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp EE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 999997432 12222222221 111111 556777899999999999999988754
No 307
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=6.5e-12 Score=100.17 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCC----CCCccceeeEEe----------------eCCEEEEEEeCCCcccchH
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDM----IPTVGFNMRKVT----------------KGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~----~~t~~~~~~~~~----------------~~~~~~~~~D~~g~~~~~~ 79 (184)
.-|||+|+..+|||-|+..+.+......- ...++.++.+.. ..--.+.++||||++.|.+
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn 555 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN 555 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence 55899999999999999999864332211 111222222111 1112477899999999999
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc------CCH------------hH
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA------LSK------------ED 141 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~------~~~------------~~ 141 (184)
++.+....||.+|+|+|+...-.-+.+ +-++....++.|+|++.||+|..-. ... .+
T Consensus 556 lRsrgsslC~~aIlvvdImhGlepqti-----ESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~E 630 (1064)
T KOG1144|consen 556 LRSRGSSLCDLAILVVDIMHGLEPQTI-----ESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNE 630 (1064)
T ss_pred hhhccccccceEEEEeehhccCCcchh-----HHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHH
Confidence 999999999999999999752111111 1111222368999999999997532 000 11
Q ss_pred HHH----------HcCCCC---cC----CCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 142 LME----------QMGLKS---IT----DREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 142 ~~~----------~~~~~~---~~----~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+.. +.++.. +. ...+.++++||.+|.||-+|+-+|++...
T Consensus 631 F~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 631 FKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 111 111111 11 23578999999999999999999987644
No 308
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.30 E-value=3.3e-11 Score=94.08 Aligned_cols=178 Identities=20% Similarity=0.284 Sum_probs=107.6
Q ss_pred hHHHHHHHHHhh---ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeC----CEEEEEEeCCCcc
Q 029978 3 LWEAFLNWLRSL---FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKG----NVTIKLWDLGGQP 75 (184)
Q Consensus 3 ~~~~~~~~~~~~---~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~D~~g~~ 75 (184)
+|..++.-.... -....-.|.|+|..++|||||+.+|.+.+. .......+|.+..+... ..++.+|...|..
T Consensus 6 lW~siL~ev~~~~~~~~~~~k~vlvlG~~~~GKttli~~L~~~e~-~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~ 84 (472)
T PF05783_consen 6 LWSSILSEVSNSSSTKLPSEKSVLVLGDKGSGKTTLIARLQGIED-PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDP 84 (472)
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEeCCCCchHHHHHHhhccCC-CCCCcccceEEEeeccCcCCcCceeeEEEcCCCc
Confidence 455555554321 123457899999999999999999875432 22223333444443221 2578999998877
Q ss_pred cchHhHHHhccCC----CEEEEEEeCCCCCChHHHH-HH----------------------------HHHHhc---CC--
Q 029978 76 RFRSMWERYCRAV----SAIVYVVDAADYDNLPVSR-SE----------------------------LHDLLS---KP-- 117 (184)
Q Consensus 76 ~~~~~~~~~~~~~----~~~i~v~d~~~~~~~~~~~-~~----------------------------~~~~~~---~~-- 117 (184)
.+..+....+... -.+++|+|.+.+..+.... .| |.+..+ ..
T Consensus 85 ~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~ 164 (472)
T PF05783_consen 85 SHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDS 164 (472)
T ss_pred chHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 7766666555432 3588999999986544221 11 111000 00
Q ss_pred -------------C---------------CCCCcEEEEeeCCCccCcCCH-----hH---HHHHcCCCCcCCCceeEEEe
Q 029978 118 -------------S---------------LNGIPLLVLGNKIDKPEALSK-----ED---LMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 118 -------------~---------------~~~~piilv~nK~D~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~ 161 (184)
. ..++|++||++|+|....... ++ ...+.-+.......+..+.|
T Consensus 165 ~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yt 244 (472)
T PF05783_consen 165 GSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYT 244 (472)
T ss_pred cCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEe
Confidence 0 013599999999998543211 11 11111122233446678999
Q ss_pred eeCCCCCHHHHHHHHHHHhh
Q 029978 162 SCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~~~ 181 (184)
|++...|++.|+.+|...+.
T Consensus 245 s~~~~~n~~~L~~yi~h~l~ 264 (472)
T PF05783_consen 245 SVKEEKNLDLLYKYILHRLY 264 (472)
T ss_pred eccccccHHHHHHHHHHHhc
Confidence 99999999999999887654
No 309
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.27 E-value=9.9e-11 Score=82.90 Aligned_cols=152 Identities=21% Similarity=0.245 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC-CCCC-CCCccceeeEEeeCCEEEEEEeCCCcccc-------hHhHHHhccCCCE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY-SEDM-IPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~-~~~~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~~~ 90 (184)
-+|+++|.|.+|||||+..+..-.. ...+ ..|.......+...+..+++.|.||.-.- ..+.-+..+.+|.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDl 142 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADL 142 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecccE
Confidence 6899999999999999999973211 1111 11222222224455668999999984322 2334456788999
Q ss_pred EEEEEeCCCCCChHHHH-HHHHHHhc--CCCCCCC---------------------------------------------
Q 029978 91 IVYVVDAADYDNLPVSR-SELHDLLS--KPSLNGI--------------------------------------------- 122 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~-~~~~~~~~--~~~~~~~--------------------------------------------- 122 (184)
+++|.|++..+.-..+. +.++.+-- ....+++
T Consensus 143 ilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ReD 222 (364)
T KOG1486|consen 143 ILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFRED 222 (364)
T ss_pred EEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEecC
Confidence 99999998765433222 22332211 1111222
Q ss_pred -----------------cEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 123 -----------------PLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 123 -----------------piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+++.|.||+|...- +++....... .-+-+||.-+.|++.+++.++..+.
T Consensus 223 ~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~---eevdrlAr~P-------nsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 223 CTVDDFIDVIEGNRVYIKCLYVYNKIDQVSI---EEVDRLARQP-------NSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred CChHHHHHHHhccceEEEEEEEeeccceecH---HHHHHHhcCC-------CcEEEEeccccCHHHHHHHHHHHhc
Confidence 78889999998665 4443332221 2466999999999999999998764
No 310
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.26 E-value=1.7e-11 Score=88.80 Aligned_cols=95 Identities=20% Similarity=0.160 Sum_probs=70.6
Q ss_pred ccchHhHHHhccCCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh-HHHHHcCCCCcC
Q 029978 75 PRFRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE-DLMEQMGLKSIT 152 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-~~~~~~~~~~~~ 152 (184)
+++..+.+.+++.+|.+++|+|+++++ ++..+..|+..+.. .++|+++|+||+|+.+..... +..+.+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~----- 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR----- 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-----
Confidence 455666677899999999999999877 78888777765432 579999999999996542221 2222221
Q ss_pred CCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 153 DREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
....+++++||++|.|++++++.+.+
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 12356999999999999999998764
No 311
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.24 E-value=1.4e-10 Score=79.41 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=41.6
Q ss_pred EEEEEeCCCcc----cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 029978 65 TIKLWDLGGQP----RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131 (184)
Q Consensus 65 ~~~~~D~~g~~----~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 131 (184)
.+.++||||.. ........+++.+|++++|.+++....-... ..+...... ....+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTT---TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcC---CCCeEEEEEcCC
Confidence 48899999953 2336677888999999999999874433322 333333333 233489999984
No 312
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.23 E-value=7.1e-11 Score=80.69 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=60.1
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH--hH
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--ED 141 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--~~ 141 (184)
..+-|++..|. .....++--..+.-|+|+|++..+.. .++. ...... .-++|+||.|+.+.... +.
T Consensus 97 ~Dll~iEs~GN---L~~~~sp~L~d~~~v~VidvteGe~~--P~K~------gP~i~~-aDllVInK~DLa~~v~~dlev 164 (202)
T COG0378 97 LDLLFIESVGN---LVCPFSPDLGDHLRVVVIDVTEGEDI--PRKG------GPGIFK-ADLLVINKTDLAPYVGADLEV 164 (202)
T ss_pred CCEEEEecCcc---eecccCcchhhceEEEEEECCCCCCC--cccC------CCceeE-eeEEEEehHHhHHHhCccHHH
Confidence 35666666661 11111222223478888898865421 1111 111122 56899999999876443 33
Q ss_pred HHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 142 LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
..+....- +...+++++|+++|.|++++++++....
T Consensus 165 m~~da~~~---np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 165 MARDAKEV---NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHh---CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 33332211 2345799999999999999999987654
No 313
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2e-10 Score=83.02 Aligned_cols=157 Identities=20% Similarity=0.214 Sum_probs=101.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc----------------CCCCCC--CCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT----------------GGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~----------------~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
+...+|+.+|+...|||||...+.. +..+.+ ..-|+......+...+......|+||+.+|.
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 4569999999999999999888762 111222 2224444444566677889999999999998
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCC--------HhHHHHHcCCC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALS--------KEDLMEQMGLK 149 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~--------~~~~~~~~~~~ 149 (184)
.....-..+.|..|+|+++++..--+ -++. .-+.++ -++| ++++.||+|+.+..+ ..+++..++.
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPq-TrEH-iLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f- 163 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQ-TREH-ILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF- 163 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCc-chhh-hhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC-
Confidence 77777778889999999998743211 1111 122222 3464 566779999987532 2333333333
Q ss_pred CcCCCceeEEEeeeCCCC--------CHHHHHHHHHHHhh
Q 029978 150 SITDREVCCYMISCKNST--------NIDTVIDWLVKHSK 181 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~~~ 181 (184)
.....|++.-||+.-. .|.+|++.+-+++.
T Consensus 164 --~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 164 --PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred --CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 2335578877877422 36777777766654
No 314
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.19 E-value=2.5e-09 Score=81.47 Aligned_cols=152 Identities=14% Similarity=0.148 Sum_probs=84.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC----CCC--------------CCCC---CCcccee--------eEEeeCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG----GYS--------------EDMI---PTVGFNM--------RKVTKGNVTIK 67 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~----~~~--------------~~~~---~t~~~~~--------~~~~~~~~~~~ 67 (184)
.-.+.|+++|+.++|||||+++|.+. ... +..+ .|+...+ ...+.....+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 44688999999999999999999965 211 1122 2333222 11223347899
Q ss_pred EEeCCCccc--------chH-------------------h--HHHhcc-CCCEEEEEE-eCC----CCCChHHHHHHHHH
Q 029978 68 LWDLGGQPR--------FRS-------------------M--WERYCR-AVSAIVYVV-DAA----DYDNLPVSRSELHD 112 (184)
Q Consensus 68 ~~D~~g~~~--------~~~-------------------~--~~~~~~-~~~~~i~v~-d~~----~~~~~~~~~~~~~~ 112 (184)
++||+|... ... . ....+. .++..++|. |.+ .++.+......+..
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999998221 111 0 233455 788888888 664 12334444433333
Q ss_pred HhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC--CHHHHHHHH
Q 029978 113 LLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST--NIDTVIDWL 176 (184)
Q Consensus 113 ~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--~v~~l~~~i 176 (184)
.++. .++|+++|.||.|-..... .+..+.+... ...+++++||.+-. .|..+++.+
T Consensus 175 eLk~---~~kPfiivlN~~dp~~~et-~~l~~~l~ek----y~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHPYHPET-EALRQELEEK----YDVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred HHHh---cCCCEEEEEECcCCCCchh-HHHHHHHHHH----hCCceEEEEHHHcCHHHHHHHHHHH
Confidence 3322 5799999999999432222 3232222111 12357778776533 344444433
No 315
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=2.9e-10 Score=90.07 Aligned_cols=111 Identities=23% Similarity=0.298 Sum_probs=78.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCC---------CCCccc------ee----eE-----EeeCCEEEEEEeCCCc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDM---------IPTVGF------NM----RK-----VTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~---------~~t~~~------~~----~~-----~~~~~~~~~~~D~~g~ 74 (184)
-.+|+++|+-++|||+|+..|....-+.-. ..+... .. .+ .....+-+++.||||+
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH 207 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH 207 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence 367899999999999999999854432221 111110 00 00 1234467999999999
Q ss_pred ccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
..|.......++.+|++++++|+.+.-.++..+.....+ ..+.|+.+|+||+|..
T Consensus 208 VnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai-----q~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 208 VNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI-----QNRLPIVVVINKVDRL 262 (971)
T ss_pred ccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH-----hccCcEEEEEehhHHH
Confidence 999999999999999999999998765555433322222 2478999999999964
No 316
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.9e-11 Score=95.68 Aligned_cols=115 Identities=20% Similarity=0.186 Sum_probs=82.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--------C------------CCCCCCCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--------Y------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--------~------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
++--+|+|.-+-.+||||+-++.+... . .....-|+......+.+.++.++++||||+-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 345678999999999999999987211 0 11112222333344667889999999999999
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
|-....+.++-.|+++++++....-- ......|..+.+ .++|.+..+||+|....
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~r----y~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKR----YNVPRICFINKMDRMGA 171 (721)
T ss_pred EEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHh----cCCCeEEEEehhhhcCC
Confidence 99888999999999999888864321 122344555544 48999999999998764
No 317
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.14 E-value=1.9e-10 Score=85.96 Aligned_cols=159 Identities=17% Similarity=0.176 Sum_probs=102.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcc------------------ceeeEEe-----------------
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG------------------FNMRKVT----------------- 60 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~------------------~~~~~~~----------------- 60 (184)
.+..+.|+..|+...|||||+-.|..+........|.. +..+-++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 35568899999999999999999886554333333221 1111111
Q ss_pred ----eCCEEEEEEeCCCcccchHh--HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 61 ----KGNVTIKLWDLGGQPRFRSM--WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 61 ----~~~~~~~~~D~~g~~~~~~~--~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
..+.-+.+.||.|++.+... ...+-.+.|..++++.+++..+ ..-+... ........|+|+|+||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHL---gi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHL---GIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhh---hhhhhhcCCEEEEEEecccC
Confidence 11235889999999988653 3344578999999999987432 2222222 22233579999999999998
Q ss_pred CcCCHhHHHHHc----C---C----------------CCcCCC-ceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 135 EALSKEDLMEQM----G---L----------------KSITDR-EVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 135 ~~~~~~~~~~~~----~---~----------------~~~~~~-~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
+++..+.+.+++ . . .....+ -.|++.+|+-+|.|++-|.+.+..+
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L 337 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL 337 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC
Confidence 875433332222 1 0 011122 5799999999999998887766543
No 318
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.12 E-value=1.9e-09 Score=86.32 Aligned_cols=119 Identities=14% Similarity=0.094 Sum_probs=70.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC-CCCC--CCCccceeeEEeeCCEEEEEEeCCCcccc----------hHhHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY-SEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRF----------RSMWER 83 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~-~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~~ 83 (184)
...++|+++|.+|+||||++|++++... .... ..|..............+.++||||.... ......
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 4457899999999999999999997653 2221 22322222222345678999999995432 111222
Q ss_pred hcc--CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCC-CCCcEEEEeeCCCccC
Q 029978 84 YCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL-NGIPLLVLGNKIDKPE 135 (184)
Q Consensus 84 ~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~ 135 (184)
++. ..|++++|.++.......+-...+..+...... --..+|||.|+.|..+
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 333 579999998876433322222233332221110 1236899999999875
No 319
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.12 E-value=9.1e-11 Score=91.01 Aligned_cols=158 Identities=23% Similarity=0.403 Sum_probs=113.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccc--eeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGF--NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.++|++|+|..++|||.|+.+++.+.+..+..+.-+. ....++.....+.+.|-+|... ..+....|++||+|
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf 103 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVF 103 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEE
Confidence 4699999999999999999999998887665554442 2233556677788888887544 55667789999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHH-HcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLME-QMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
.+.+..+|+.+......+..+.....+|.++++++ |.......+-+.+ +-.........+.+|++++..|.|+...|.
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtq-d~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~ 182 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQ-DHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ 182 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCc-chhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence 99999999999888888877666678899999987 3322211111111 111112233455699999999999999999
Q ss_pred HHHHHhh
Q 029978 175 WLVKHSK 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
.+...+.
T Consensus 183 ~~~~k~i 189 (749)
T KOG0705|consen 183 EVAQKIV 189 (749)
T ss_pred HHHHHHH
Confidence 8876654
No 320
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.11 E-value=2.9e-08 Score=71.47 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=42.9
Q ss_pred EEEEEEeCCCccc-------------chHhHHHhcc-CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 029978 64 VTIKLWDLGGQPR-------------FRSMWERYCR-AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 129 (184)
Q Consensus 64 ~~~~~~D~~g~~~-------------~~~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 129 (184)
..+.++||||-.. ...+...+++ ..+.+++|+|++..-.-... ..+.+.....+.|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~----l~ia~~ld~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA----LKLAKEVDPQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH----HHHHHHHHHcCCcEEEEEE
Confidence 3688999999532 1234556666 44588889988642211111 1222222335789999999
Q ss_pred CCCccCc
Q 029978 130 KIDKPEA 136 (184)
Q Consensus 130 K~D~~~~ 136 (184)
|.|..+.
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9999764
No 321
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.11 E-value=7.1e-10 Score=78.92 Aligned_cols=152 Identities=18% Similarity=0.123 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCCEEEEEEeCCCcccc-------hHhHHHhccCCCE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~~~ 90 (184)
-+|.++|.|.+||||++..+.+...+ .....|............-++++.|.||.-.- ..+.....+.|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 38999999999999999999843221 11111211111222344567999999984321 2344556788999
Q ss_pred EEEEEeCCCCCChHHHHHHHHH-H--hcCCCCC-----------------------------------------------
Q 029978 91 IVYVVDAADYDNLPVSRSELHD-L--LSKPSLN----------------------------------------------- 120 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~-~--~~~~~~~----------------------------------------------- 120 (184)
+++|.|+..+-+...+.+.-.+ + ......+
T Consensus 140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D 219 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD 219 (358)
T ss_pred EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence 9999999876544443322111 0 0000001
Q ss_pred -----------CCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 121 -----------GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 121 -----------~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
-+|++.+.||+|...- +|.. .....+..+++||-.++|++++++.+++.+.
T Consensus 220 dLIdvVegnr~yVp~iyvLNkIdsISi---EELd-------ii~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 220 DLIDVVEGNRIYVPCIYVLNKIDSISI---EELD-------IIYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhccCceeeeeeeeecccceeee---eccc-------eeeeccceeecccccccchHHHHHHHhhcch
Confidence 1288889999987654 2221 1123346899999999999999999998765
No 322
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.09 E-value=5.2e-09 Score=81.98 Aligned_cols=151 Identities=17% Similarity=0.223 Sum_probs=99.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--e--EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--R--KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++-+.+.++|+.++|||.+++.++++.+...+..+....+ . ........+.+-|.+-.+ ....... -..+|++.
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~-~~~l~~k-e~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDD-QDFLTSK-EAACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCccc-cccccCc-cceeeeEE
Confidence 4458899999999999999999998777664433333221 1 122344455566655331 1111111 16799999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-----CHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-----SKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++||++++.+|......+...... ...|+++|++|+|+.+.. .+++...++++.. -..+|++...
T Consensus 501 ~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~-------P~~~S~~~~~ 570 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP-------PIHISSKTLS 570 (625)
T ss_pred EecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC-------CeeeccCCCC
Confidence 999999999998877665544332 679999999999986532 3466777776653 3446666433
Q ss_pred CHHHHHHHHHHHh
Q 029978 168 NIDTVIDWLVKHS 180 (184)
Q Consensus 168 ~v~~l~~~i~~~~ 180 (184)
. ..+|..|....
T Consensus 571 s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 571 S-NELFIKLATMA 582 (625)
T ss_pred C-chHHHHHHHhh
Confidence 3 78888877654
No 323
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=7.8e-09 Score=77.52 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=57.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEe------------------eCCEEEEEEeCCCcc---
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVT------------------KGNVTIKLWDLGGQP--- 75 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~------------------~~~~~~~~~D~~g~~--- 75 (184)
.++++|+|-||||||||.+.++..... .-+..|+......+. .....++++|.+|--
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999976643 223445553332211 112568999999832
Q ss_pred ----cchHhHHHhccCCCEEEEEEeCCC
Q 029978 76 ----RFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 76 ----~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
-..+..-.-+|.+|+++-|+++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 334556677899999999999973
No 324
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.05 E-value=1.6e-09 Score=79.92 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=61.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCC----------CCCcccee--eEEee--CCEEEEEEeCCCcccc-------
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDM----------IPTVGFNM--RKVTK--GNVTIKLWDLGGQPRF------- 77 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~----------~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~------- 77 (184)
.++|+++|.+|+|||||++.|.+....... ..+..... ..... ..+.+.++||||....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999965432221 01111111 11222 2367889999992210
Q ss_pred -----------hHhHH---------HhccCCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 78 -----------RSMWE---------RYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 78 -----------~~~~~---------~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
..... ..-...|+++++++.+.. ...... ..+..+. ..+++|-|+.|+|..-.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS-----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT-----TTSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc-----ccccEEeEEecccccCH
Confidence 00000 001245889999998653 222222 2333333 35889999999998654
No 325
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=99.03 E-value=4.2e-10 Score=78.89 Aligned_cols=133 Identities=17% Similarity=0.312 Sum_probs=87.8
Q ss_pred CCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC----------CCChHHHHHHHHHHhcCCCC
Q 029978 50 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------YDNLPVSRSELHDLLSKPSL 119 (184)
Q Consensus 50 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~ 119 (184)
||.+...++++..++-+.+.|.+|+..-+..|...+...-.+++++.++. .....+....+..++.+...
T Consensus 185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF 264 (359)
T KOG0085|consen 185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 264 (359)
T ss_pred CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence 34444444455566778899999988777777776666666666665553 23445555667778888888
Q ss_pred CCCcEEEEeeCCCccCcCC------------------Hh---HHHHHc--CCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 120 NGIPLLVLGNKIDKPEALS------------------KE---DLMEQM--GLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 120 ~~~piilv~nK~D~~~~~~------------------~~---~~~~~~--~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
.+.++|+..||.|+.++.. ++ +..-.+ .+..-..+...-.++.|.+-.||..+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 8999999999999976521 11 111111 122223334445678999999999999988
Q ss_pred HHHhhh
Q 029978 177 VKHSKS 182 (184)
Q Consensus 177 ~~~~~~ 182 (184)
.+.+.+
T Consensus 345 kDtiLq 350 (359)
T KOG0085|consen 345 KDTILQ 350 (359)
T ss_pred HHHHHH
Confidence 877654
No 326
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.02 E-value=1.2e-09 Score=76.45 Aligned_cols=146 Identities=22% Similarity=0.340 Sum_probs=92.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCC---CCCCCCCCccceeeEEe-eCCEEEEEEeCCCcccchH-----hHHHhccCCC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGG---YSEDMIPTVGFNMRKVT-KGNVTIKLWDLGGQPRFRS-----MWERYCRAVS 89 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~---~~~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~~ 89 (184)
.-||.+.|.+|+||||+=..+..+. .....+.|+.....++. .++..+++||.+|++.+.. .....++..+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 4689999999999999855554222 13345556655555443 4568999999999986543 3445678899
Q ss_pred EEEEEEeCCCCCC---hHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCC---CCcCCCceeEEEeee
Q 029978 90 AIVYVVDAADYDN---LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL---KSITDREVCCYMISC 163 (184)
Q Consensus 90 ~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Sa 163 (184)
+++++||+...+- +...++-+..+++. .+...+.+..+|+|+.+....+++-++... .......+.++++|-
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 9999999987542 22333334444443 367788999999999887554333322111 111122356777777
Q ss_pred CCC
Q 029978 164 KNS 166 (184)
Q Consensus 164 ~~~ 166 (184)
.+.
T Consensus 162 wDe 164 (295)
T KOG3886|consen 162 WDE 164 (295)
T ss_pred hhH
Confidence 653
No 327
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.02 E-value=1.9e-09 Score=79.00 Aligned_cols=77 Identities=27% Similarity=0.378 Sum_probs=51.4
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCC--CCCCccceeeEEeeC-----------------CEEEEEEeCCCccc------
Q 029978 22 LSLIGLQNAGKTSLVNVIATGGYSED--MIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPR------ 76 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~~~~~~--~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~------ 76 (184)
|+|+|.|++|||||++++++...... +..|+......+... ...+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 58999999999999999997665322 334444333322221 13599999999432
Q ss_pred -chHhHHHhccCCCEEEEEEeCC
Q 029978 77 -FRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 77 -~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
........++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1222334467899999999974
No 328
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.01 E-value=3.7e-09 Score=80.04 Aligned_cols=79 Identities=28% Similarity=0.346 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCCccceeeEEeeC-----------------CEEEEEEeCCCcccc---
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSE--DMIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPRF--- 77 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~~--- 77 (184)
++|+++|.||+|||||++++++..... .+..|+......+... ...+.+.|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999766432 2344444333222211 135899999994321
Q ss_pred ----hHhHHHhccCCCEEEEEEeCC
Q 029978 78 ----RSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 78 ----~~~~~~~~~~~~~~i~v~d~~ 98 (184)
.......++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 123334568899999999985
No 329
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.00 E-value=3.1e-09 Score=74.29 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=63.5
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHc---CCCCcC
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQM---GLKSIT 152 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~---~~~~~~ 152 (184)
+...+..+++.+|++++|+|++++..- +...+... ..+.|+++|+||+|+.+... ..+..... ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 577788889999999999999875421 11111111 14689999999999975432 12121111 101111
Q ss_pred CCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 153 DREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
....+++++||+++.|++++++.+.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11125899999999999999999988653
No 330
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=4.1e-10 Score=81.90 Aligned_cols=159 Identities=18% Similarity=0.242 Sum_probs=100.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCC---CCCC--CCCCccceee-----EEe---------------------------
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGG---YSED--MIPTVGFNMR-----KVT--------------------------- 60 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~---~~~~--~~~t~~~~~~-----~~~--------------------------- 60 (184)
..++|+-+|+.-.||||++..+.+-. |..+ ..-|+...+. ..+
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 45899999999999999999887321 1111 1112211110 000
Q ss_pred -eCC----EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHH--HHHHHhcCCCCCCCcEEEEeeCCCc
Q 029978 61 -KGN----VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS--ELHDLLSKPSLNGIPLLVLGNKIDK 133 (184)
Q Consensus 61 -~~~----~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~piilv~nK~D~ 133 (184)
.++ ..+.|.|.||++-.......-..-.|++++++..+....-..--+ ...++.+ -+.++++-||+|+
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~-----LkhiiilQNKiDl 191 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK-----LKHIIILQNKIDL 191 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh-----hceEEEEechhhh
Confidence 001 357899999998776555544455678888888765322111111 1223332 3578999999999
Q ss_pred cCcCCHhHHHHHcC--CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 134 PEALSKEDLMEQMG--LKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 134 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
..+..+.+..+++. .........|++++||.-.+|++.+.|+|.+.+.
T Consensus 192 i~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 88766555444443 1222345678999999999999999999998764
No 331
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.97 E-value=1.7e-09 Score=73.23 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=61.4
Q ss_pred hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCcee
Q 029978 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVC 157 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
+.+.....+.+|++++|+|++++..... ..+...... .+.|+++|+||+|+.+.....+.. .+. .....+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~-~~~----~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWK-SIK----ESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHH-HHH----HhCCCc
Confidence 3456677788999999999987543222 112222221 368999999999986432111111 111 112246
Q ss_pred EEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 158 CYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 158 ~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
++++||+++.|++++++.+.+.+.
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHh
Confidence 899999999999999999988764
No 332
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.96 E-value=5.4e-09 Score=70.86 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=35.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g 73 (184)
....+|+++|.+|+|||||+|++.+.... ...+.|........ .-.+.++||||
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~liDtPG 156 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MKRIYLIDCPG 156 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CCCEEEEECcC
Confidence 35688999999999999999999864431 22222322222221 12478999998
No 333
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.95 E-value=2.3e-09 Score=80.19 Aligned_cols=153 Identities=19% Similarity=0.257 Sum_probs=95.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCC------------------CCCCCCCCccceeeEEe-----------------e--
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGG------------------YSEDMIPTVGFNMRKVT-----------------K-- 61 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~------------------~~~~~~~t~~~~~~~~~-----------------~-- 61 (184)
+.+|+++|...+|||||+-.+.+++ +......+++.+..-++ |
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 4789999999999999998887432 12222223332222111 1
Q ss_pred ---C-CEEEEEEeCCCcccchHh--HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 62 ---G-NVTIKLWDLGGQPRFRSM--WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 62 ---~-~~~~~~~D~~g~~~~~~~--~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
. .-.+.|+|.+|+++|... ..+.-+-.|...+++-++- .+-...+....+ .....+|+.+|+||+|..+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNa--GIiGmTKEHLgL---ALaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANA--GIIGMTKEHLGL---ALALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccc--cceeccHHhhhh---hhhhcCcEEEEEEeeccCc
Confidence 1 124789999999998753 2333455677777777653 222222222222 2224699999999999987
Q ss_pred cCCHhHHHHHcC-------------------------CCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 136 ALSKEDLMEQMG-------------------------LKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 136 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
....+|.++.+. ..+...+-+|+|.+|.-+|.|++-|.-.+
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 765555554331 12233456899999999999987665443
No 334
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.90 E-value=9.4e-09 Score=70.57 Aligned_cols=55 Identities=24% Similarity=0.340 Sum_probs=37.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC-C--CCCCCCccceeeEEeeCCEEEEEEeCCCc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY-S--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (184)
...++++++|.||+|||||+|++.+... . ..++.|........ . ..+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~--~-~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL--D-KKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe--C-CCEEEEECcCC
Confidence 3458999999999999999999996543 2 22233333222222 2 35889999983
No 335
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.6e-09 Score=87.02 Aligned_cols=110 Identities=22% Similarity=0.273 Sum_probs=75.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCC------------CC--CCCCCCcc----ceeeEEeeCCEEEEEEeCCCcccchHh
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGG------------YS--EDMIPTVG----FNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~------------~~--~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
--+++++-+...|||||+..+.-.. |- .+...+.+ ......-.+++.++++|+||+.+|-..
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se 88 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE 88 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence 3578999999999999999998221 10 01111111 111223347789999999999999999
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCc
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 133 (184)
..+..+-+|.+++++|+...-. .....++++....+...|+|+||+|.
T Consensus 89 vssas~l~d~alvlvdvvegv~-----~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 89 VSSASRLSDGALVLVDVVEGVC-----SQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhcCCcEEEEeeccccc-----hhHHHHHHHHHHccCceEEEEehhhh
Confidence 9999999999999999976322 22222222222245678999999993
No 336
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.89 E-value=3.4e-08 Score=72.60 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=91.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEee-CCEEEEEEeCCCccc--chHhHH------HhccC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR--FRSMWE------RYCRA 87 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~--~~~~~~------~~~~~ 87 (184)
.--|+++|=.|+|||||+++++....- .....|.......... ....+-+.||-|.-. ...+.. .-...
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVae 257 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAE 257 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhh
Confidence 356899999999999999999843321 2233344433322211 123577789998321 112222 22467
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc----EEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP----LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p----iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+|.++-|+|++.++.-......+.-+. ....++.| +|=|-||+|..+.....| .+ ..+.+||
T Consensus 258 adlllHvvDiShP~ae~q~e~Vl~vL~-~igv~~~pkl~~mieVdnkiD~e~~~~e~E----------~n---~~v~isa 323 (410)
T KOG0410|consen 258 ADLLLHVVDISHPNAEEQRETVLHVLN-QIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----------KN---LDVGISA 323 (410)
T ss_pred cceEEEEeecCCccHHHHHHHHHHHHH-hcCCCcHHHHhHHHhhccccccccccCccc----------cC---Ccccccc
Confidence 899999999999875554444444443 32323233 455778888765422111 11 1567999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
++|.|.+++.+.+-..+.
T Consensus 324 ltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 324 LTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccCccHHHHHHHHHHHhh
Confidence 999999999998876654
No 337
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=3.6e-10 Score=85.45 Aligned_cols=124 Identities=23% Similarity=0.213 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC--------C------------CCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchH
Q 029978 20 MELSLIGLQNAGKTSLVNVIATG--------G------------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~--------~------------~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
-+|+|+.+..+||||.-.+++.- . ...+.+-|+......++++.++++++||||+.+|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 67899999999999999998721 0 012233344455567889999999999999999999
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC---CHhHHHHHcCC
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL---SKEDLMEQMGL 148 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~---~~~~~~~~~~~ 148 (184)
...+.++-.|+++.|||.+-.-. ......+++....++|-+..+||+|+.... .++.+.+.++.
T Consensus 118 everclrvldgavav~dasagve-----~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVE-----AQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcc-----cceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 99999999999999999985322 222333445555789999999999997643 34555555553
No 338
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.88 E-value=1e-08 Score=73.20 Aligned_cols=122 Identities=18% Similarity=0.235 Sum_probs=83.1
Q ss_pred eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC----------ChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 029978 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD----------NLPVSRSELHDLLSKPSLNGIPLLVLGNK 130 (184)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~piilv~nK 130 (184)
.....+..+|.+||.+-+..|...+.+..++|+|+..+..+ ..++....+..+.+......+.+|+..||
T Consensus 199 Vdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNK 278 (379)
T KOG0099|consen 199 VDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNK 278 (379)
T ss_pred ccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecH
Confidence 34557889999999999999999999999999999988642 23334445566666666678899999999
Q ss_pred CCccCcC------------------------------CHhHHHHHcC-------C---CCcCCCceeEEEeeeCCCCCHH
Q 029978 131 IDKPEAL------------------------------SKEDLMEQMG-------L---KSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 131 ~D~~~~~------------------------------~~~~~~~~~~-------~---~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
.|+..+. ++.-+...+- . ..-..+-+...++.|.+-.||.
T Consensus 279 qDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIr 358 (379)
T KOG0099|consen 279 QDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIR 358 (379)
T ss_pred HHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHH
Confidence 9986531 0111111100 0 0001123445568899999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
.+|....+++..
T Consensus 359 rVFnDcrdiIqr 370 (379)
T KOG0099|consen 359 RVFNDCRDIIQR 370 (379)
T ss_pred HHHHHHHHHHHH
Confidence 999887777653
No 339
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.6e-08 Score=74.79 Aligned_cols=160 Identities=16% Similarity=0.104 Sum_probs=98.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc----------------CCCCCCC--CCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT----------------GGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~----------------~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
++..+|+-+|+...|||||-..+.. +..+++. .-|+......+...+......|+||+.+|.
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 3458999999999999999887761 1112222 223333333445556677888999999998
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh-----HHHHHcCCCCcCC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE-----DLMEQMGLKSITD 153 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-----~~~~~~~~~~~~~ 153 (184)
.....-...-|+.|+|+.+++.. +..-+...-+.++... ..+++.+||.|+.+..+.- |+.+.+.......
T Consensus 132 KNMItGaaqMDGaILVVaatDG~--MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGP--MPQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCC--CcchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 77777777889999999999853 2222333333444332 3467778999998653321 2222222223334
Q ss_pred CceeEEEeeeCC---CC----C---HHHHHHHHHHHh
Q 029978 154 REVCCYMISCKN---ST----N---IDTVIDWLVKHS 180 (184)
Q Consensus 154 ~~~~~~~~Sa~~---~~----~---v~~l~~~i~~~~ 180 (184)
...|++.-||+. +. | |.+|++.+-+++
T Consensus 208 d~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 208 DNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred CCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 566788877763 32 2 556666555544
No 340
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=7.1e-08 Score=72.18 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=83.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEee----------------CC---------------
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTK----------------GN--------------- 63 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~----------------~~--------------- 63 (184)
.+-.|.++|+-..||||+|+.++...++ ..+.||..+-.....+ ..
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 3466899999999999999999987765 2344555432221110 00
Q ss_pred ----------EEEEEEeCCCcc-----------cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC
Q 029978 64 ----------VTIKLWDLGGQP-----------RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 122 (184)
Q Consensus 64 ----------~~~~~~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (184)
-.++++||||.- +|.....=+...+|.++++||....+--.+....+..+..+ .-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----ED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cc
Confidence 158999999932 23334555678899999999998776555555555555443 44
Q ss_pred cEEEEeeCCCccCcCCHhHHHHHcC
Q 029978 123 PLLVLGNKIDKPEALSKEDLMEQMG 147 (184)
Q Consensus 123 piilv~nK~D~~~~~~~~~~~~~~~ 147 (184)
.+-+|.||.|..+. ++++.-++
T Consensus 213 kiRVVLNKADqVdt---qqLmRVyG 234 (532)
T KOG1954|consen 213 KIRVVLNKADQVDT---QQLMRVYG 234 (532)
T ss_pred eeEEEeccccccCH---HHHHHHHH
Confidence 67889999999776 77777665
No 341
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.85 E-value=2.2e-08 Score=67.86 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=59.4
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEee
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
..+..+|.+++|+|+.++..-. ...+...+... ..++|+++|+||+|+.+.....+....+... .....+++|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~--~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTR--CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCcccc--CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEee
Confidence 4567899999999998863211 12222222221 2458999999999996543223333343321 122368899
Q ss_pred eCCCCCHHHHHHHHHHHh
Q 029978 163 CKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~ 180 (184)
|+++.|++++++.+.+..
T Consensus 77 a~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 77 INNPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999999999999998764
No 342
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.84 E-value=1.4e-08 Score=73.07 Aligned_cols=160 Identities=17% Similarity=0.161 Sum_probs=91.0
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCC-Ccc-ceeeEEeeCCEEEEEEeCCC----------cccchHhHH
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIP-TVG-FNMRKVTKGNVTIKLWDLGG----------QPRFRSMWE 82 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~-t~~-~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~ 82 (184)
+.....++++.|.+++|||+|++.+.+......... +.+ ......-.-.-.+.+.|.|| ..++.....
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHH
Confidence 345568999999999999999999986443322221 111 11111112234688889999 122333444
Q ss_pred HhccC---CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCC------CCc
Q 029978 83 RYCRA---VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGL------KSI 151 (184)
Q Consensus 83 ~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~------~~~ 151 (184)
.|+.. .-.+++++|++. +++...-...+++.. .++|..+|.||+|...... .......+.. ...
T Consensus 212 ~Y~leR~nLv~~FLLvd~sv--~i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~ 286 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVDASV--PIQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV 286 (320)
T ss_pred HHHHhhhhhheeeeeeeccC--CCCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence 44422 234566677664 333333333333333 6799999999999865321 1111111111 011
Q ss_pred CCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 152 TDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
.....|++.+|+.++.|++.|+-.+.+.
T Consensus 287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 287 FLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred eeccCCceeeecccccCceeeeeehhhh
Confidence 1123467789999999999988766554
No 343
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.83 E-value=1.5e-08 Score=70.88 Aligned_cols=67 Identities=25% Similarity=0.344 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCC-----------CCCCCCccceeeEEeeCCEEEEEEeCC
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYS-----------EDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~-----------~~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+.+..++.... +.+..++++|.+|+|||||+|++.+.... ..++.|.......+ .. .+.++|||
T Consensus 113 i~eL~~~l~~~l-~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~~-~~~~~DtP 188 (190)
T cd01855 113 VEELINAIKKLA-KKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL--GN-GKKLYDTP 188 (190)
T ss_pred HHHHHHHHHHHh-hcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec--CC-CCEEEeCc
Confidence 345555555443 35678999999999999999999964321 11122222222222 21 57899999
Q ss_pred Cc
Q 029978 73 GQ 74 (184)
Q Consensus 73 g~ 74 (184)
|.
T Consensus 189 G~ 190 (190)
T cd01855 189 GI 190 (190)
T ss_pred CC
Confidence 83
No 344
>PRK12289 GTPase RsgA; Reviewed
Probab=98.83 E-value=1.5e-08 Score=77.01 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=60.3
Q ss_pred HHhccCCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEE
Q 029978 82 ERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
...+..+|.+++|+|+.+++ ....+..++... . ..++|+++|+||+|+..........+.+. ....++++
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~---~~~ip~ILVlNK~DLv~~~~~~~~~~~~~-----~~g~~v~~ 154 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKA-E---STGLEIVLCLNKADLVSPTEQQQWQDRLQ-----QWGYQPLF 154 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-H---HCCCCEEEEEEchhcCChHHHHHHHHHHH-----hcCCeEEE
Confidence 34578899999999998765 333344444433 2 25799999999999975422223333221 12335899
Q ss_pred eeeCCCCCHHHHHHHHHH
Q 029978 161 ISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~ 178 (184)
+||+++.|+++|++.+..
T Consensus 155 iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 155 ISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEcCCCCCHHHHhhhhcc
Confidence 999999999999998864
No 345
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.80 E-value=2.1e-08 Score=66.77 Aligned_cols=52 Identities=29% Similarity=0.298 Sum_probs=35.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCC---CCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
+++++|.+|+|||||+|++.+...... ...|.......+ .. .+.+|||||..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--TP-TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--CC-CEEEEECCCcC
Confidence 899999999999999999997665321 222222222222 22 57899999953
No 346
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.7e-07 Score=73.83 Aligned_cols=152 Identities=21% Similarity=0.361 Sum_probs=89.3
Q ss_pred HHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCC-CCCCCCCcccee------------------------------
Q 029978 8 LNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGY-SEDMIPTVGFNM------------------------------ 56 (184)
Q Consensus 8 ~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~-~~~~~~t~~~~~------------------------------ 56 (184)
+.-+.+...+...||+|.|..++||||++|+++.... |....+++..-.
T Consensus 98 l~~i~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~ 177 (749)
T KOG0448|consen 98 LDAIDEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLA 177 (749)
T ss_pred HHHHHHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHH
Confidence 3344555567789999999999999999999994332 222333322100
Q ss_pred --------------eEEeeCC-------EEEEEEeCCCc---ccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHH
Q 029978 57 --------------RKVTKGN-------VTIKLWDLGGQ---PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHD 112 (184)
Q Consensus 57 --------------~~~~~~~-------~~~~~~D~~g~---~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 112 (184)
..+-+++ -.+.++|.||- +....-.......+|++|+|+.+.+ .+....+.+..
T Consensus 178 haL~~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~ 255 (749)
T KOG0448|consen 178 HALKPDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFH 255 (749)
T ss_pred HhcCcccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHH
Confidence 0000000 15778899984 3445556677788999999999876 33443343333
Q ss_pred HhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHH---cCCCCcCCCceeEEEeeeC
Q 029978 113 LLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQ---MGLKSITDREVCCYMISCK 164 (184)
Q Consensus 113 ~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~Sa~ 164 (184)
-... .+.-|.++.||.|....+. .+++..+ +.....+.....++++||+
T Consensus 256 ~vs~---~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 256 KVSE---EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred Hhhc---cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 2222 2344566668889865422 3444443 3333333334468889966
No 347
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.78 E-value=4.9e-08 Score=67.09 Aligned_cols=55 Identities=24% Similarity=0.331 Sum_probs=37.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCCccceeeEEeeCCEEEEEEeCCCc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (184)
...++++++|.+|+|||||++++.+..+.. ....|........+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 445899999999999999999999765521 11223222222222 45789999994
No 348
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=2.4e-07 Score=65.59 Aligned_cols=70 Identities=16% Similarity=0.327 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhccCC--ceEEEEEcCCCCChHHHHHHHHcCCCCC---------CCCCCccceee--EEeeC--CEEEEE
Q 029978 4 WEAFLNWLRSLFFKQ--EMELSLIGLQNAGKTSLVNVIATGGYSE---------DMIPTVGFNMR--KVTKG--NVTIKL 68 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~i~iiG~~g~GKStli~~l~~~~~~~---------~~~~t~~~~~~--~~~~~--~~~~~~ 68 (184)
++.+...++....+. .|+|+++|.+|.|||||++.+....... ....|...... .+..+ ..++.+
T Consensus 29 idtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltv 108 (336)
T KOG1547|consen 29 IDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTV 108 (336)
T ss_pred HHHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEE
Confidence 566777776655554 5899999999999999999998432211 11122221111 12223 367889
Q ss_pred EeCCC
Q 029978 69 WDLGG 73 (184)
Q Consensus 69 ~D~~g 73 (184)
+||||
T Consensus 109 iDTPG 113 (336)
T KOG1547|consen 109 IDTPG 113 (336)
T ss_pred ecCCC
Confidence 99999
No 349
>PRK00098 GTPase RsgA; Reviewed
Probab=98.76 E-value=3.1e-08 Score=73.98 Aligned_cols=86 Identities=22% Similarity=0.206 Sum_probs=58.5
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEee
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.+..+|.+++|+|+.+++........+...... .++|+++|+||+|+.+.. ...+..+.+. ....+++++|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-----~~g~~v~~vS 148 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEEARELLALYR-----AIGYDVLELS 148 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 358899999999998887665544444333332 478999999999996321 1111222211 1224689999
Q ss_pred eCCCCCHHHHHHHHH
Q 029978 163 CKNSTNIDTVIDWLV 177 (184)
Q Consensus 163 a~~~~~v~~l~~~i~ 177 (184)
|+++.|++++++.+.
T Consensus 149 A~~g~gi~~L~~~l~ 163 (298)
T PRK00098 149 AKEGEGLDELKPLLA 163 (298)
T ss_pred CCCCccHHHHHhhcc
Confidence 999999999998775
No 350
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.76 E-value=4.4e-08 Score=72.78 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=61.8
Q ss_pred HHhccCCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEE
Q 029978 82 ERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
...+..+|.+++|+|+.++. ++..+.+|+..+.. .++|+++|+||+|+.+........... .....++++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEA-----LALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHH-----HhCCCeEEE
Confidence 34478899999999999887 77777666554433 468999999999996541111111111 112347899
Q ss_pred eeeCCCCCHHHHHHHHHH
Q 029978 161 ISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~ 178 (184)
+||+++.|+++|++.+..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999987753
No 351
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.76 E-value=1.1e-08 Score=78.16 Aligned_cols=99 Identities=28% Similarity=0.410 Sum_probs=64.2
Q ss_pred cccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-CHhHHHHHcC--CCC
Q 029978 74 QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKEDLMEQMG--LKS 150 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~--~~~ 150 (184)
++++......+.+.++++++|+|+.+... .....+.... .+.|+++|+||+|+.+.. ..+++.+.+. ...
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence 56778888888899999999999977542 1112222222 257999999999997543 2222222111 000
Q ss_pred cCCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 151 ITDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
.......++++||+++.|++++++.+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 00011248899999999999999999765
No 352
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=1.2e-07 Score=67.06 Aligned_cols=157 Identities=22% Similarity=0.327 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCC---CCCccceeeEEeeCCEEEEEEeCCCcccch---HhHHHhccCCCEEEE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDM---IPTVGFNMRKVTKGNVTIKLWDLGGQPRFR---SMWERYCRAVSAIVY 93 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---~~~~~~~~~~~~~i~ 93 (184)
-+|.+.|...+||||+-....++.-|.+. ..|......++...-+.+++||.|||..+- .-..+.++++.++++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 55999999999999998877655433321 112222222233455789999999987652 234667899999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcC--CCCCCCcEEEEeeCCCccCcCCH----hHHHHHcC----CCCcCCCceeEEEeee
Q 029978 94 VVDAADYDNLPVSRSELHDLLSK--PSLNGIPLLVLGNKIDKPEALSK----EDLMEQMG----LKSITDREVCCYMISC 163 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~Sa 163 (184)
|+|+.+ .+.+....+.....+ .-.+++.+-+.+.|.|-..++.. .++.++.+ -.........++.+|-
T Consensus 108 vIDaQd--dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 108 VIDAQD--DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEechH--HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 999975 445555554444332 22378888999999998765322 22222211 1111223556777887
Q ss_pred CCCCCHHHHHHHHHHH
Q 029978 164 KNSTNIDTVIDWLVKH 179 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~ 179 (184)
.+.. |=+.|..+++.
T Consensus 186 yDHS-IfEAFSkvVQk 200 (347)
T KOG3887|consen 186 YDHS-IFEAFSKVVQK 200 (347)
T ss_pred cchH-HHHHHHHHHHH
Confidence 7654 55555544443
No 353
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=4e-08 Score=73.62 Aligned_cols=153 Identities=20% Similarity=0.285 Sum_probs=91.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCC-----------------------CCCccceee----E----------Eee
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDM-----------------------IPTVGFNMR----K----------VTK 61 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~-----------------------~~t~~~~~~----~----------~~~ 61 (184)
+++++++|...+|||||+-.+..+...... ..+.+++-. . .+.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 488999999999999999988744321111 111111110 0 111
Q ss_pred CCEEEEEEeCCCcccchHhHHHhc--cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 139 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~ 139 (184)
..--+.++|.+|+.+|....-..+ -..|+..+++++...-. ........+.. .-++|.+++++|+|+.+....
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~--~tTrEHLgl~~---AL~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGIT--WTTREHLGLIA---ALNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCc--cccHHHHHHHH---HhCCCeEEEEEeeccccchhH
Confidence 123588999999998876443333 34688888998875322 22222222221 247999999999999876332
Q ss_pred hH----HHHHcC---C------------------CCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 140 ED----LMEQMG---L------------------KSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 140 ~~----~~~~~~---~------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+. +.+.+. . ......-.|+|.+|+-+|.|++-+...+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 22 222111 0 0111224689999999999988766544
No 354
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.74 E-value=4.1e-07 Score=68.10 Aligned_cols=114 Identities=18% Similarity=0.309 Sum_probs=66.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCC----------CCCCccceeeE--Ee--eCCEEEEEEeCCCcccc-----
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSED----------MIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRF----- 77 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~----------~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~----- 77 (184)
.-.++|+++|++|.|||||+|+|++...... ..+|+...... +. .....++++||||.-++
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 3469999999999999999999996532221 12232222222 22 22367889999993221
Q ss_pred ---------hHhHHHh--------------ccCCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCc
Q 029978 78 ---------RSMWERY--------------CRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDK 133 (184)
Q Consensus 78 ---------~~~~~~~--------------~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~ 133 (184)
..+...+ -...|++++.+..+.. ++..+. ..+..+. ..+-+|-|+-|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh-----cccCeeeeeecccc
Confidence 1111111 1235788888887642 223222 2233333 34667888889998
Q ss_pred cCc
Q 029978 134 PEA 136 (184)
Q Consensus 134 ~~~ 136 (184)
.-.
T Consensus 175 lT~ 177 (373)
T COG5019 175 LTD 177 (373)
T ss_pred CCH
Confidence 654
No 355
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.74 E-value=6.9e-08 Score=65.28 Aligned_cols=82 Identities=20% Similarity=0.198 Sum_probs=53.3
Q ss_pred CEEEEEEeCCCCCChHHHHHHHH-HHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 89 SAIVYVVDAADYDNLPVSRSELH-DLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
|++++|+|+.++.+.... ++. ..... .++|+++|+||+|+.+.....+....+... ....++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRHS----YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHhh----CCceEEEEeccCCc
Confidence 689999999876544321 222 22222 468999999999996542222222222111 12358899999999
Q ss_pred CHHHHHHHHHHH
Q 029978 168 NIDTVIDWLVKH 179 (184)
Q Consensus 168 ~v~~l~~~i~~~ 179 (184)
|++++.+.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988764
No 356
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.73 E-value=9.5e-08 Score=64.63 Aligned_cols=68 Identities=24% Similarity=0.369 Sum_probs=42.5
Q ss_pred HHHHHHHHhhcc--CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEeeCCEEEEEEeCCC
Q 029978 5 EAFLNWLRSLFF--KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGG 73 (184)
Q Consensus 5 ~~~~~~~~~~~~--~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g 73 (184)
+.+...+..... ....+++++|.+|+||||+++++.+.. .....++.+.... .....+..+.+|||||
T Consensus 85 ~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 85 KILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 344444444322 346789999999999999999998543 3333444443221 1112233689999998
No 357
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.72 E-value=7.8e-08 Score=66.11 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=63.2
Q ss_pred CCcc-cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC
Q 029978 72 GGQP-RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS 150 (184)
Q Consensus 72 ~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~ 150 (184)
||+. +........+..+|.+++|+|++++..... ..+.... .+.|+++|+||+|+.+.....+..+.+..
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-- 73 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-- 73 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh--
Confidence 5543 445667788899999999999987543221 1111111 25799999999999643211122121111
Q ss_pred cCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 151 ITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
....++.+||+++.|++++.+.+.+.+
T Consensus 74 ---~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 ---KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 123578999999999999999998864
No 358
>PRK12288 GTPase RsgA; Reviewed
Probab=98.71 E-value=8.2e-08 Score=72.92 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=62.0
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
...+|.+++|++.....++..+..|+.... ..++|.++|+||+|+.+....+...+.... ......+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCC
Confidence 456899999999987778888777765332 256899999999999764321122221111 11123479999999
Q ss_pred CCCCHHHHHHHHHHH
Q 029978 165 NSTNIDTVIDWLVKH 179 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~ 179 (184)
++.|+++|++.+...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999988653
No 359
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.71 E-value=8.6e-08 Score=70.88 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=66.0
Q ss_pred CCcc-cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC
Q 029978 72 GGQP-RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS 150 (184)
Q Consensus 72 ~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~ 150 (184)
|||. +........+..+|++++|+|+..+.+... ..+.... .+.|+++|+||+|+.+.....+..+.+..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-- 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-- 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH--
Confidence 6665 345567788899999999999987543222 1222222 25799999999999643222222222211
Q ss_pred cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 151 ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
...+++.+||+++.|++++.+.+.+.+.
T Consensus 76 ---~~~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 76 ---KGIKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 1235899999999999999999987765
No 360
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1e-07 Score=71.61 Aligned_cols=113 Identities=17% Similarity=0.243 Sum_probs=65.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCC---------CCCCccceeeE--Ee--eCCEEEEEEeCCCcccc-------
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSED---------MIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRF------- 77 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~---------~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~------- 77 (184)
..++++++|++|.|||||+|+|+....... ...|....... +. +-.+.++++||||..+.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 359999999999999999999886543221 22233322222 22 23367889999993221
Q ss_pred -------hHhHHH-----------hcc--CCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 78 -------RSMWER-----------YCR--AVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 78 -------~~~~~~-----------~~~--~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
...... ... ..|++++.+..+.. +...+. ..+..+. ..+.+|-|+-|+|..-.
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~-----~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS-----KKVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh-----ccccccceeeccccCCH
Confidence 011111 122 56889998887652 222222 1222222 35677888889998654
No 361
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.68 E-value=1.5e-07 Score=69.96 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=38.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC-C--CCCCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY-S--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
...++++++|.||+|||||+|++.+... . ..++.|..... +... ..+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~~-~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW--IKLG-KGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE--EEeC-CcEEEEECCCcC
Confidence 3568999999999999999999997543 2 22223333322 2222 258899999953
No 362
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.68 E-value=1.5e-07 Score=69.58 Aligned_cols=54 Identities=24% Similarity=0.325 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (184)
..++++++|.||+|||||+|++.+... ...+..|........ . -.+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL--S-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe--C-CCEEEEECCCc
Confidence 458899999999999999999986543 222333333332222 2 25789999996
No 363
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.63 E-value=3.9e-07 Score=69.28 Aligned_cols=80 Identities=21% Similarity=0.220 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC-CCC--CCCCccceeeEEe--e---------------CCEEEEEEeCCCccc---
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY-SED--MIPTVGFNMRKVT--K---------------GNVTIKLWDLGGQPR--- 76 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~-~~~--~~~t~~~~~~~~~--~---------------~~~~~~~~D~~g~~~--- 76 (184)
++++|+|.|++|||||.+.+++... +.. +..|.......+. . ....+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999997665 322 2233433222211 1 224689999999432
Q ss_pred ----chHhHHHhccCCCEEEEEEeCCC
Q 029978 77 ----FRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 77 ----~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
........++.+|+++.|++..+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 23345566789999999999864
No 364
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.63 E-value=2.5e-07 Score=62.58 Aligned_cols=54 Identities=28% Similarity=0.326 Sum_probs=37.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC-C--CCCCCCccceeeEEeeCCEEEEEEeCCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY-S--EDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g 73 (184)
....+++++|.+|+|||||+|.+.+... . .....|......... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCC
Confidence 4568899999999999999999996542 2 223334443333332 3588999998
No 365
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=3.9e-08 Score=74.18 Aligned_cols=158 Identities=22% Similarity=0.224 Sum_probs=100.1
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHH---------------------------------cCCCCCCCCCCccceeeEEeeC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIA---------------------------------TGGYSEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~---------------------------------~~~~~~~~~~t~~~~~~~~~~~ 62 (184)
.+..++++++|+..+||||+-..+. ......+...|++.....+...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 4567999999999999999987776 1112233445666666667777
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC---ChHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NLPVS-RSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
..++.+.|+||+..|-...-.-..++|..++|+++...+ .|... +..-..++.... .-...|+++||+|-+-..-
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCccCc
Confidence 789999999999988776666677889988888885422 12111 111111111111 2357899999999765321
Q ss_pred ----HhHHHHHcC-----CCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 139 ----KEDLMEQMG-----LKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 139 ----~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
-++..+.+. +.........++++|..+|.++++..+
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 122222211 122223456799999999999987653
No 366
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.59 E-value=9.9e-08 Score=64.31 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~ 42 (184)
-.++++|++|||||||+|.+...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57799999999999999999965
No 367
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.58 E-value=2.8e-07 Score=68.52 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=66.1
Q ss_pred CCCcc-cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCC
Q 029978 71 LGGQP-RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK 149 (184)
Q Consensus 71 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~ 149 (184)
.|||. +-.......+..+|++++|+|+..+.+... ..+..... +.|+++|.||+|+.+....++..+.+..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~~- 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFEE- 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHHH-
Confidence 46765 334567778899999999999987644322 22233322 5799999999999643212222222211
Q ss_pred CcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 150 SITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
...+++.+||+++.|++++.+.+.+.+.
T Consensus 79 ----~~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 79 ----QGIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred ----cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 1235789999999999999999887764
No 368
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=5.6e-07 Score=71.02 Aligned_cols=139 Identities=12% Similarity=0.163 Sum_probs=81.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
++++.++++||||+||||||+.+...-.........+. ...+.....++.+.++|.+ .........-+|.+++++|
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP-iTvvsgK~RRiTflEcp~D---l~~miDvaKIaDLVlLlId 142 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP-ITVVSGKTRRITFLECPSD---LHQMIDVAKIADLVLLLID 142 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc-eEEeecceeEEEEEeChHH---HHHHHhHHHhhheeEEEec
Confidence 46789999999999999999999843222111111111 1223456678999999832 2223445567899999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCC-HhHHHHHcCCCCc--CCCceeEEEeeeC
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALS-KEDLMEQMGLKSI--TDREVCCYMISCK 164 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~ 164 (184)
.+-. |....-.+..++.. .+.| ++-|+|+.|+..... ...+.+.+.-..+ ....+.+|..|.-
T Consensus 143 gnfG--fEMETmEFLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 143 GNFG--FEMETMEFLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred cccC--ceehHHHHHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 8753 22222233444444 3455 455889999986532 3333333332221 2334556666654
No 369
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.56 E-value=2.7e-07 Score=69.55 Aligned_cols=56 Identities=27% Similarity=0.360 Sum_probs=39.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
....+++++|-|+||||||||+|.+... ...++.|.+......+. .+.++||||.-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCcC
Confidence 3458899999999999999999997554 23333344444443333 38899999943
No 370
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.53 E-value=2.4e-06 Score=61.25 Aligned_cols=82 Identities=21% Similarity=0.144 Sum_probs=51.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcC--CCCCC---CCCCccceeeEEee---CCEEEEEEeCCCcccc------hHhHHHh
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATG--GYSED---MIPTVGFNMRKVTK---GNVTIKLWDLGGQPRF------RSMWERY 84 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~--~~~~~---~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~------~~~~~~~ 84 (184)
-.-|+|+|++++|||||+|.+.+. .+... ...|.+.-...... .+..+.++||+|.... .......
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~ 86 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA 86 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence 345789999999999999999987 55422 23344433222222 3578999999995422 1112222
Q ss_pred cc--CCCEEEEEEeCCCC
Q 029978 85 CR--AVSAIVYVVDAADY 100 (184)
Q Consensus 85 ~~--~~~~~i~v~d~~~~ 100 (184)
+. -++++|+..+....
T Consensus 87 l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 87 LATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHhCEEEEeccCccc
Confidence 23 37888888777643
No 371
>PRK12288 GTPase RsgA; Reviewed
Probab=98.53 E-value=3.7e-07 Score=69.42 Aligned_cols=54 Identities=22% Similarity=0.299 Sum_probs=34.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC------CC----CCCCccceeeEEeeCCEEEEEEeCCCcccc
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS------ED----MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~------~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (184)
.++++|.+|||||||+|+|++.... .. ...|.......+..+ ..++||||...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 3789999999999999999854321 11 112333333344333 248999997653
No 372
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.53 E-value=7.9e-07 Score=66.87 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=73.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC------CC---CCCCCC------------CccceeeEE-----------------
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG------GY---SEDMIP------------TVGFNMRKV----------------- 59 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~------~~---~~~~~~------------t~~~~~~~~----------------- 59 (184)
++-.++++|++|+||||++..+... .. ..+... ..+..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999998721 00 000000 000011100
Q ss_pred eeCCEEEEEEeCCCcccch----HhHHHh--------ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 029978 60 TKGNVTIKLWDLGGQPRFR----SMWERY--------CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 127 (184)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~----~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 127 (184)
...++.+.++||||..... ...... ....+..++|+|++... ..+. ........ --+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~-~a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALS-QAKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHH-HHHHHHhh----CCCCEEE
Confidence 1245689999999964321 111111 12467789999998532 2222 22222211 1245688
Q ss_pred eeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 128 GNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 128 ~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
.||.|....- ..-.+.... ..|+.+++ +|.+++++-
T Consensus 266 lTKlD~t~~~G~~l~~~~~~--------~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADEL--------GIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCccHHHHHHHHH--------CCCEEEEe--CCCChhhCc
Confidence 9999954321 122222222 23577777 667777664
No 373
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.52 E-value=9.4e-08 Score=66.71 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=24.5
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...++-.++|+||+|||||||++.+.+
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 34556777899999999999999999974
No 374
>PRK14974 cell division protein FtsY; Provisional
Probab=98.52 E-value=8e-07 Score=67.16 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=50.9
Q ss_pred CEEEEEEeCCCcccc----hHhHHHhc--cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 63 NVTIKLWDLGGQPRF----RSMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
++.+.++||+|.... ........ ...+.+++|+|+..... .......+... . -+--++.||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~---~-~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEA---V-GIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhc---C-CCCEEEEeeecCCCC
Confidence 356899999996532 12222222 34688899999875332 22222222211 1 134678899998543
Q ss_pred CC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 137 LS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 137 ~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
-- .-.+.... ..|+.+++ +|.+++++.
T Consensus 295 ~G~~ls~~~~~--------~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 GGAALSIAYVI--------GKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ccHHHHHHHHH--------CcCEEEEe--CCCChhhcc
Confidence 21 12222222 23567776 678887765
No 375
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.50 E-value=5.2e-07 Score=59.99 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=49.2
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEE
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
....+..+|++++|+|+.++.+... ..+..++.... .++|+++|+||+|+.+.....+..+.+.. ....+++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~-----~~~~ii~ 76 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKK-----EGIVVVF 76 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHh-----cCCeEEE
Confidence 4566788999999999988664332 12222222211 46899999999999654222222222211 1235889
Q ss_pred eeeCCCCC
Q 029978 161 ISCKNSTN 168 (184)
Q Consensus 161 ~Sa~~~~~ 168 (184)
+||+++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99998754
No 376
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.49 E-value=1e-06 Score=65.37 Aligned_cols=82 Identities=23% Similarity=0.376 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCC--CCccceeeEEe-----------------eCCEEEEEEeCCCccc--
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMI--PTVGFNMRKVT-----------------KGNVTIKLWDLGGQPR-- 76 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~--~t~~~~~~~~~-----------------~~~~~~~~~D~~g~~~-- 76 (184)
..++++|+|.|+||||||.|.++......... .|+......+. .....+++.|++|-.+
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 56899999999999999999999776654433 35543333221 1235799999998332
Q ss_pred -----chHhHHHhccCCCEEEEEEeCCC
Q 029978 77 -----FRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 77 -----~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
..+...+.++.+|+++-|+++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 34445566788999999988864
No 377
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.48 E-value=5.1e-07 Score=60.50 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=36.9
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 132 (184)
.+.+.++||+|..... ..++..+|-++++....-.+.+.-+. ..+.. .--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~~------~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK---AGIME------IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh---hhHhh------hcCEEEEeCCC
Confidence 4678899998865322 34778889888888877433333221 12222 33488999988
No 378
>PRK13796 GTPase YqeH; Provisional
Probab=98.48 E-value=6e-07 Score=68.89 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCC--------CCCCCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGY--------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
.+++...+... .++.++.++|.+|||||||+|++..... ...++.|........+.+ ..++||||..
T Consensus 147 I~eL~~~I~~~--~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 147 IDELLEAIEKY--REGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred HHHHHHHHHHh--cCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 34555555443 2456899999999999999999985321 122233333332223222 4789999963
No 379
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.46 E-value=5.6e-07 Score=68.97 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCC--------CCCCCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGY--------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
.+++...+... .++.++.++|.+|+|||||+|++++... ...+..|.... .+... -.+.++||||..
T Consensus 141 v~eL~~~l~~~--~~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~-~~~~l~DtPG~~ 215 (360)
T TIGR03597 141 IDELLDKIKKA--RNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLD-DGHSLYDTPGII 215 (360)
T ss_pred HHHHHHHHHHH--hCCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeC-CCCEEEECCCCC
Confidence 34555555444 2357899999999999999999996422 12222233222 22221 135799999964
Q ss_pred c
Q 029978 76 R 76 (184)
Q Consensus 76 ~ 76 (184)
.
T Consensus 216 ~ 216 (360)
T TIGR03597 216 N 216 (360)
T ss_pred C
Confidence 3
No 380
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.45 E-value=1.2e-06 Score=59.37 Aligned_cols=21 Identities=48% Similarity=0.585 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 029978 22 LSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~ 42 (184)
+.++|+.|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999998854
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=98.44 E-value=7.5e-07 Score=67.80 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=33.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC---CCC-------CCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSE---DMI-------PTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~---~~~-------~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
.++|+|++|||||||+|.|....... ... .|..........+ ..++||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 47999999999999999998543211 111 2333333333222 26889999643
No 382
>PRK13796 GTPase YqeH; Provisional
Probab=98.42 E-value=1e-06 Score=67.60 Aligned_cols=99 Identities=23% Similarity=0.310 Sum_probs=57.8
Q ss_pred ccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCC--CCc
Q 029978 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGL--KSI 151 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~--~~~ 151 (184)
+.+.............+++|+|+.+... .....+..+. .+.|+++|+||+|+.+... .+++.+.... ...
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 3455544444333448999999987542 1122222222 2579999999999975322 2222211110 000
Q ss_pred CCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 152 TDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
......++.+||+++.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 00112488999999999999999997754
No 383
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.41 E-value=1.8e-05 Score=52.90 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+..++|+|.|+|||||||++.++.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHH
Confidence 457899999999999999999887
No 384
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.38 E-value=4.4e-06 Score=72.98 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=66.5
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCCC----CCCccc-eeeEEee-CCEEEEEEeCCCcc--------cchHhHHHh---
Q 029978 22 LSLIGLQNAGKTSLVNVIATGGYSEDM----IPTVGF-NMRKVTK-GNVTIKLWDLGGQP--------RFRSMWERY--- 84 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~~~~~~~----~~t~~~-~~~~~~~-~~~~~~~~D~~g~~--------~~~~~~~~~--- 84 (184)
.+++|++|+||||++..- +..++-.. ..+.+. ...++++ -.-...++||+|.. .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~ 192 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL 192 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence 589999999999999986 44443221 111111 0111111 11245688999921 122233333
Q ss_pred ------ccCCCEEEEEEeCCCCCC--h-------HHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 85 ------CRAVSAIVYVVDAADYDN--L-------PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 85 ------~~~~~~~i~v~d~~~~~~--~-------~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
-+..+++|+++|+.+.-. - ..++..+.++..... ...||.+++||+|+...
T Consensus 193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhcC
Confidence 234799999999976421 1 233444555554444 68999999999999753
No 385
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.37 E-value=1.1e-05 Score=60.61 Aligned_cols=91 Identities=18% Similarity=0.087 Sum_probs=50.8
Q ss_pred EEEEEEeCCCcccchHhHHHhcc--------CCCEEEEEEeCCCCCChHH-HHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCR--------AVSAIVYVVDAADYDNLPV-SRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
....+++|.|-.........+.. ..|.++-|+|+.+...... ......+-+.. .-++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCC
Confidence 45667888886555444443332 2467999999987543222 22222222222 348999999998
Q ss_pred CcCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 135 EALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+....+.....+. ..+..++++++|.
T Consensus 159 ~~~~l~~l~~~l~---~lnp~A~i~~~~~ 184 (323)
T COG0523 159 DAEELEALEARLR---KLNPRARIIETSY 184 (323)
T ss_pred CHHHHHHHHHHHH---HhCCCCeEEEccc
Confidence 8754333333332 2233446777766
No 386
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.36 E-value=1.3e-06 Score=63.47 Aligned_cols=53 Identities=21% Similarity=0.175 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC------CCC----CCCCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGY------SED----MIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~------~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
..++++|++|+|||||+|++.+... +.. ...|......... + -.++||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~-~---~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH-G---GLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC-C---cEEEeCCCccc
Confidence 3679999999999999999985422 111 1133344444442 2 26889999754
No 387
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.32 E-value=2.6e-06 Score=62.77 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=51.7
Q ss_pred CCEEEEEEeCCCcccchHh----HHH---hc-----cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 029978 62 GNVTIKLWDLGGQPRFRSM----WER---YC-----RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 129 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~----~~~---~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 129 (184)
.++.+.++||||....... ... .. ..+|..++|+|++.. .... .....+.+.. -+.-+|.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~-~~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNAL-EQAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHH-HHHHHHHhhC----CCCEEEEE
Confidence 4578999999996542211 111 11 237889999999742 2222 2223332221 14568899
Q ss_pred CCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 130 KIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 130 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|.|....-- .-.+....+ .|+.+++ +|.+++++-
T Consensus 226 KlDe~~~~G~~l~~~~~~~--------~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYELK--------LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCccHHHHHHHHHC--------cCEEEEe--CCCChHhCc
Confidence 999754321 222222222 3566666 566676654
No 388
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.30 E-value=1.7e-06 Score=67.23 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=60.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc-----C-CC---CCC-CC-----------CCccceeeE-Ee----------------
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT-----G-GY---SED-MI-----------PTVGFNMRK-VT---------------- 60 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~-----~-~~---~~~-~~-----------~t~~~~~~~-~~---------------- 60 (184)
.-.|+++|++||||||++..+.. + .. ..+ +. ...+..+.. ..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45689999999999999998861 1 10 010 00 000111110 00
Q ss_pred eCCEEEEEEeCCCcccch----HhHHHh--ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 61 KGNVTIKLWDLGGQPRFR----SMWERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
...+.+.++||+|..... ...... ....+.+++|+|+.....-.. ....+.+. --+.-++.||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS----VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc----cCCcEEEEECccCC
Confidence 125789999999964332 222222 234678999999875432222 22222111 13567888999974
Q ss_pred C
Q 029978 135 E 135 (184)
Q Consensus 135 ~ 135 (184)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 3
No 389
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.29 E-value=6.4e-07 Score=62.84 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
..++++|++||||||.+-++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHH
Confidence 357899999999999998887
No 390
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.29 E-value=3.2e-06 Score=62.23 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=33.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC------CC----CCCCCCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGG------YS----EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~------~~----~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
..+++|++|||||||+|++.... .. .....|......++..+. .++||||...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~ 228 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRS 228 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCc
Confidence 67899999999999999998421 11 112223333444443232 4679999765
No 391
>PRK01889 GTPase RsgA; Reviewed
Probab=98.25 E-value=1e-05 Score=61.94 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=54.3
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
...+|.+++|+++...-+...+.. +..+... .++|.++|+||+|+.+. .++..+.+... ....+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr-~L~~a~~---~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIER-YLALAWE---SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHH-HHHHHHH---cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 467899999999964333333333 3333322 46788999999999754 12222222111 234568999999
Q ss_pred CCCCHHHHHHHHH
Q 029978 165 NSTNIDTVIDWLV 177 (184)
Q Consensus 165 ~~~~v~~l~~~i~ 177 (184)
++.|+++|.+.+.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999998874
No 392
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.23 E-value=5.1e-06 Score=61.82 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
..++++|++|+|||||+|.+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 578999999999999999998643
No 393
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.21 E-value=9.8e-05 Score=58.54 Aligned_cols=80 Identities=23% Similarity=0.280 Sum_probs=56.0
Q ss_pred EEEEEeCCCcc-------------cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 029978 65 TIKLWDLGGQP-------------RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131 (184)
Q Consensus 65 ~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 131 (184)
++.+.|.||.- ....+...+....+++|+|+.-... ...+...-++.......+...|+|.||+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV---DAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV---DAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc---chhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 57788999921 2234566788899999999976533 3344555566666666788999999999
Q ss_pred CccCc--CCHhHHHHHcC
Q 029978 132 DKPEA--LSKEDLMEQMG 147 (184)
Q Consensus 132 D~~~~--~~~~~~~~~~~ 147 (184)
|+.+. .+++.+.+.+.
T Consensus 490 DlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIE 507 (980)
T ss_pred chhhhccCCHHHHHHHHh
Confidence 99765 34566666554
No 394
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.20 E-value=5.4e-06 Score=63.43 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++-.++++|++|+||||++.++..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999999973
No 395
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.19 E-value=5.6e-06 Score=56.95 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=38.4
Q ss_pred CEEEEEEeCCCcccc----hHhHHHhc--cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 63 NVTIKLWDLGGQPRF----RSMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
.+.+.++|++|.... ......+. ...+.+++|++..... ........+.+.. + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 456888999996422 22222222 3478899999986432 2223334433322 2 35677799997653
No 396
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.18 E-value=2e-06 Score=59.50 Aligned_cols=69 Identities=19% Similarity=0.155 Sum_probs=38.6
Q ss_pred CEEEEEEeCCCcccchHh-----HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC
Q 029978 63 NVTIKLWDLGGQPRFRSM-----WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~-----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 137 (184)
.....++++.|....... .....-..+.++.|+|+.+..........+...+... -++++||+|+.+..
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A------DvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA------DVIVLNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc------CEEEEeccccCChh
Confidence 346677888885443332 0111234578999999976432233333334444433 38899999998764
No 397
>PRK00098 GTPase RsgA; Reviewed
Probab=98.17 E-value=8.1e-06 Score=61.08 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+..++++|++|+|||||+|.+.+.
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999854
No 398
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.16 E-value=7.4e-06 Score=57.09 Aligned_cols=112 Identities=15% Similarity=0.244 Sum_probs=59.7
Q ss_pred EEEEEeCCCcccchH---hHHHh---cc--CC-CEEEEEEeCCCC-CC---hHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 029978 65 TIKLWDLGGQPRFRS---MWERY---CR--AV-SAIVYVVDAADY-DN---LPVSRSELHDLLSKPSLNGIPLLVLGNKI 131 (184)
Q Consensus 65 ~~~~~D~~g~~~~~~---~~~~~---~~--~~-~~~i~v~d~~~~-~~---~~~~~~~~~~~~~~~~~~~~piilv~nK~ 131 (184)
..-++|.|||-.... ..+.. +. .. -+++++.+..-. ++ +......+..+.. -.+|.|=|.+|+
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsKM 174 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSKM 174 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhHH
Confidence 477899999854321 11111 11 22 246667766421 11 1222222333333 368999999999
Q ss_pred CccCcCCHhHHHHHcCCCCcC---------------------------CCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 132 DKPEALSKEDLMEQMGLKSIT---------------------------DREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 132 D~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
|+.....++++.+.+.-.... ..-..+++..+.+..+|+.++..|-.++
T Consensus 175 DLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 175 DLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 998875555554444321110 0123566666666777777776665544
No 399
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.14 E-value=1.2e-05 Score=57.24 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=24.3
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..+++--++|+||+|||||||++.+.+
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34556777799999999999999998873
No 400
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.12 E-value=2.7e-05 Score=58.68 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=37.5
Q ss_pred EEEEEEeCCCcccchHhHHHhcc--------CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCR--------AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
....+++|.|..........+.. ..+.++.|+|+.+......-......-.. ..-++|+||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~------~AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG------YADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH------hCCEEEEeccccCC
Confidence 45567888887655544444321 24779999999753321110111111111 23488999999976
Q ss_pred c
Q 029978 136 A 136 (184)
Q Consensus 136 ~ 136 (184)
.
T Consensus 165 ~ 165 (318)
T PRK11537 165 E 165 (318)
T ss_pred H
Confidence 4
No 401
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=1.8e-05 Score=60.79 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
...|+++|++|+||||++..+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 4678999999999999999996
No 402
>PRK13695 putative NTPase; Provisional
Probab=98.06 E-value=0.00019 Score=49.42 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
++++++|++|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999865
No 403
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=1.4e-05 Score=58.11 Aligned_cols=70 Identities=13% Similarity=0.244 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhccC--CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCC----ccceeeEEe--eCC--EEEEEEeCCC
Q 029978 4 WEAFLNWLRSLFFK--QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPT----VGFNMRKVT--KGN--VTIKLWDLGG 73 (184)
Q Consensus 4 ~~~~~~~~~~~~~~--~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t----~~~~~~~~~--~~~--~~~~~~D~~g 73 (184)
|++|...+-+.... ..++|.-+|..|.|||||++.+.+-.+...+.+. +.....+++ ..+ .++.+.||.|
T Consensus 25 FdsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 25 FDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred cccChHHHHHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 45555555444444 4589999999999999999999988887665443 222222222 222 5788999998
No 404
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.03 E-value=7.1e-05 Score=57.38 Aligned_cols=112 Identities=14% Similarity=0.172 Sum_probs=60.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccc---eeeE-------------------------------EeeCC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGF---NMRK-------------------------------VTKGN 63 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~---~~~~-------------------------------~~~~~ 63 (184)
++-.|+++||.||||||-+-+|...-........++. +.++ ....+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 3677899999999999998888732221111111110 0000 01134
Q ss_pred EEEEEEeCCCcccch----HhHHHhccCC--CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 64 VTIKLWDLGGQPRFR----SMWERYCRAV--SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~----~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
+++.++||.|...+. .....++..+ .-+.++++++. ....+...+..+.. .++. =+++||.|....
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~----~~i~-~~I~TKlDET~s 353 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSL----FPID-GLIFTKLDETTS 353 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhcc----CCcc-eeEEEcccccCc
Confidence 689999999966442 3344444333 33556777764 22344444443322 2222 356799997543
No 405
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.02 E-value=0.00015 Score=55.92 Aligned_cols=24 Identities=13% Similarity=0.407 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.-.+=++++||..+|||||+.+|.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHH
Confidence 345778999999999999999997
No 406
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=6.6e-05 Score=59.79 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
..+-.++++|++|+||||++..|.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 456788999999999999998887
No 407
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.98 E-value=1.1e-05 Score=62.98 Aligned_cols=52 Identities=23% Similarity=0.299 Sum_probs=41.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCC---CCCCCCCCccceeeEEeeCCEEEEEEeCCC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGG---YSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g 73 (184)
.+.|++||-|||||||+||.|.+.. ....++.|..+-+..++. .+.+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCC
Confidence 4889999999999999999999764 456677777777666544 377889999
No 408
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=2.9e-05 Score=60.78 Aligned_cols=119 Identities=20% Similarity=0.236 Sum_probs=76.1
Q ss_pred HHHhhccCC--ceEEEEEcCCCCChHHHHHHHHcC------------CCC------CCCCCCccceeeE-----------
Q 029978 10 WLRSLFFKQ--EMELSLIGLQNAGKTSLVNVIATG------------GYS------EDMIPTVGFNMRK----------- 58 (184)
Q Consensus 10 ~~~~~~~~~--~~~i~iiG~~g~GKStli~~l~~~------------~~~------~~~~~t~~~~~~~----------- 58 (184)
-.+.++.++ --++.++.+...|||||-..+... +|. .+..-|+......
T Consensus 8 ~vr~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~ 87 (842)
T KOG0469|consen 8 QVRELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLK 87 (842)
T ss_pred HHHHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHH
Confidence 344444433 356789999999999999999721 111 1111122211111
Q ss_pred -----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCc
Q 029978 59 -----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 133 (184)
Q Consensus 59 -----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 133 (184)
.+...+-++++|.||+.+|.+..-..++-.|+.++|+|.-+.-..+.. ..+.+.+. .++.=+++.||+|.
T Consensus 88 ~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~----ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 88 FIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA----ERIKPVLVMNKMDR 162 (842)
T ss_pred HhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHH----hhccceEEeehhhH
Confidence 123457899999999999999999999999999999998764433332 22222222 23444678999996
No 409
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.96 E-value=2.3e-05 Score=58.46 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+..-++++|-+|+||||-+-++.
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA 160 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLA 160 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHH
Confidence 46778999999999999998887
No 410
>PRK10867 signal recognition particle protein; Provisional
Probab=97.93 E-value=2.1e-05 Score=61.48 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=18.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
...|+++|++|+||||++-.+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 4668899999999999766665
No 411
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=8.5e-05 Score=57.65 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
...++++|++||||||++.++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA 244 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLA 244 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3558899999999999999987
No 412
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=5.8e-05 Score=58.76 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++-.++++|++|+||||++..+..
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
No 413
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.90 E-value=0.00015 Score=55.31 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=18.0
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
..+.|.-|+|||||+++++.
T Consensus 7 ~iltGFLGaGKTTll~~ll~ 26 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQ 26 (341)
T ss_pred EEEEECCCCCHHHHHHHHHh
Confidence 47889999999999999984
No 414
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.90 E-value=4.2e-05 Score=59.94 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++..|+++|++|+||||++..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45678999999999999998886
No 415
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.90 E-value=1.4e-05 Score=60.68 Aligned_cols=68 Identities=26% Similarity=0.375 Sum_probs=45.9
Q ss_pred HHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCC-CCCCCCCccceeeEEeeCCEEEEEEeCCCc
Q 029978 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGY-SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (184)
-+-+|-+.-..+..++++|+|-|++||||+||+|..... +....|++......+. .+-.+.+.|.||.
T Consensus 239 ~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~-Ldk~i~llDsPgi 307 (435)
T KOG2484|consen 239 VLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK-LDKKIRLLDSPGI 307 (435)
T ss_pred HhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee-ccCCceeccCCce
Confidence 344444555567789999999999999999999997654 3333344333333333 2336888999984
No 416
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.90 E-value=3.3e-05 Score=55.10 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=26.4
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
|+...++-.++|+|++|||||||.+.+.+-.
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 4666778889999999999999999998543
No 417
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=0.00039 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
+..++++|++|+||||.+..+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA 195 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLA 195 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999998886
No 418
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.87 E-value=5.6e-05 Score=56.47 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=24.6
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++..+++--++++|++|+|||||++.+.+.
T Consensus 25 s~~i~~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 25 SFEVEPGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 345566667899999999999999999843
No 419
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.86 E-value=8.9e-05 Score=52.68 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=38.5
Q ss_pred EEEEEeCC-CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 65 TIKLWDLG-GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 65 ~~~~~D~~-g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
.+.+.||- |.+.+. +...+++|.+++|+|.+.. ++... +...++.+... =.++.+|.||+|..
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~ta-eri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTA-ERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCcHH-HHHHH-HHHHHHHHHhC--CceEEEEEeeccch
Confidence 45555653 444433 3456789999999998742 33332 23334433322 27899999999965
No 420
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.84 E-value=3.8e-05 Score=60.06 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=18.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
+..++++|++|+||||++-.+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 4668899999999999966664
No 421
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=5.2e-05 Score=58.06 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++-.++++|+.|+||||++..+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 345668999999999999999887
No 422
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.82 E-value=2.2e-05 Score=44.13 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
..+|.|++|+|||||++.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999886
No 423
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.81 E-value=0.00016 Score=53.27 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=30.0
Q ss_pred chHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 2 GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
|+.+.....++.......-.++|.|++|+||||+++.++..
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 45555555555555444556899999999999999998743
No 424
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.81 E-value=2e-05 Score=50.75 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|+|.|++||||||+++.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999984
No 425
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=5.9e-05 Score=65.10 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=65.9
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCC----CCCCccceeeEEee-CCEEEEEEeCCCcc--------cchHhHHH-----
Q 029978 22 LSLIGLQNAGKTSLVNVIATGGYSED----MIPTVGFNMRKVTK-GNVTIKLWDLGGQP--------RFRSMWER----- 83 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~~~D~~g~~--------~~~~~~~~----- 83 (184)
-+|+|++|+||||++..- +..|+-. .....+..+.++++ -.-.-.++||.|.. .....|..
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 489999999999998754 2333211 11111122223321 11246678999822 12233332
Q ss_pred ----hccCCCEEEEEEeCCCCCC---------hHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 84 ----YCRAVSAIVYVVDAADYDN---------LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 84 ----~~~~~~~~i~v~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
-.+..+++|+.+|+.+.-. ...++..+.++..... ...|+.+++||.|+.+.
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEeccccccc
Confidence 2455789999999875321 1223444555554433 67999999999999773
No 426
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.80 E-value=2.5e-05 Score=55.98 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=24.3
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...++=-|+|+|++|||||||++.+.+
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34556666789999999999999999985
No 427
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.79 E-value=0.00013 Score=54.00 Aligned_cols=89 Identities=19% Similarity=0.157 Sum_probs=60.0
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
....|-.++++++.+++--......+.-+... .++.-++++||+|+.+.+.... +..+........+.+.+|++
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~---~~~~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV---KELLREYEDIGYPVLFVSAK 150 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH---HHHHHHHHhCCeeEEEecCc
Confidence 34467888889998887555555555444443 4677788899999987754442 11111222344579999999
Q ss_pred CCCCHHHHHHHHHHH
Q 029978 165 NSTNIDTVIDWLVKH 179 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~ 179 (184)
++.+++++.+.+...
T Consensus 151 ~~~~~~~l~~~l~~~ 165 (301)
T COG1162 151 NGDGLEELAELLAGK 165 (301)
T ss_pred CcccHHHHHHHhcCC
Confidence 999999999887643
No 428
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.79 E-value=1.9e-05 Score=57.31 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=24.5
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..+++--++|+||+|||||||++.+.+
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45556677789999999999999999984
No 429
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.79 E-value=8.6e-05 Score=54.81 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=35.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC--------CCCCCCCcccee-eEEeeCCEEEEEEeCCCc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY--------SEDMIPTVGFNM-RKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~--------~~~~~~t~~~~~-~~~~~~~~~~~~~D~~g~ 74 (184)
+.+..+.++|.||+|||||+|.+..... ..+++-|..... ..+. ..-.+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~-~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS-HRPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec-cCCceEEecCCCc
Confidence 3579999999999999999998874221 112222222211 1122 2234788899994
No 430
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.79 E-value=2e-05 Score=54.35 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++...++-.++++|++|+|||||++.+.
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5667788899999999999999999886
No 431
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.78 E-value=0.00019 Score=56.90 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++--++++|++|+||||++..+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHH
Confidence 345689999999999999999883
No 432
>PRK08118 topology modulation protein; Reviewed
Probab=97.76 E-value=2.6e-05 Score=53.37 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
+|+|+|++|||||||...+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999983
No 433
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.75 E-value=3.5e-05 Score=52.82 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.5
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...+-.++|+|++|+|||||+|-+.+
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHh
Confidence 35567899999999999999999883
No 434
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.74 E-value=4e-05 Score=51.89 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=24.7
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
|+...++-.++|+||+|+|||||+..+.
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va 50 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVA 50 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHH
Confidence 5566777889999999999999999998
No 435
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0003 Score=54.89 Aligned_cols=153 Identities=15% Similarity=0.184 Sum_probs=82.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH----cCCC------------------------------------CCCCCCCcc---
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA----TGGY------------------------------------SEDMIPTVG--- 53 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~----~~~~------------------------------------~~~~~~t~~--- 53 (184)
++++-|+++|-+||||||-+-++. .+.+ ...|.....
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~va 455 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVA 455 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHH
Confidence 477999999999999999988886 1111 001110000
Q ss_pred -ceeeEEeeCCEEEEEEeCCCcccch----HhHHH--hccCCCEEEEEEeCC-CCCChHHHHHHHHHHhcCCCCCCCcEE
Q 029978 54 -FNMRKVTKGNVTIKLWDLGGQPRFR----SMWER--YCRAVSAIVYVVDAA-DYDNLPVSRSELHDLLSKPSLNGIPLL 125 (184)
Q Consensus 54 -~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~~--~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~pii 125 (184)
..+..-....+.+.++||+|..... ..... -....|.+++|-.+- .-++...+...-..+.... .++.---
T Consensus 456 k~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~-~~r~id~ 534 (587)
T KOG0781|consen 456 KEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHS-TPRLIDG 534 (587)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCC-Cccccce
Confidence 0000011245789999999965322 22222 246788899887763 3345666555444444433 2334445
Q ss_pred EEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeee------CCCCCHHHHHHHH
Q 029978 126 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC------KNSTNIDTVIDWL 176 (184)
Q Consensus 126 lv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa------~~~~~v~~l~~~i 176 (184)
++++|+|-.+. .+-....+.... ..|++++-+ +...|++.+...+
T Consensus 535 ~~ltk~dtv~d----~vg~~~~m~y~~--~~pi~fvg~gqtysdlr~l~v~~vv~~l 585 (587)
T KOG0781|consen 535 ILLTKFDTVDD----KVGAAVSMVYIT--GKPILFVGVGQTYSDLRKLNVKAVVATL 585 (587)
T ss_pred EEEEeccchhh----HHHHHhhheeec--CCceEEEecCcchhhhhhccHHHHHHHh
Confidence 67899997653 333334443333 334555433 2344555554443
No 436
>PRK07261 topology modulation protein; Provisional
Probab=97.74 E-value=2.9e-05 Score=53.37 Aligned_cols=21 Identities=24% Similarity=0.629 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
+|+|+|++|+|||||++.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999873
No 437
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.73 E-value=0.0005 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
+-.++++|++|+||||++-.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999887775
No 438
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.73 E-value=2.1e-05 Score=51.86 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=23.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEEccCCCccccceeeecc
Confidence 3456677899999999999999998874
No 439
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.71 E-value=3.3e-05 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.+|+|+|+|||||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999843
No 440
>PRK01889 GTPase RsgA; Reviewed
Probab=97.70 E-value=0.00011 Score=56.29 Aligned_cols=33 Identities=27% Similarity=0.576 Sum_probs=25.7
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+.+..++ ..+-+++++|.+|+|||||++.+.+.
T Consensus 186 ~~L~~~L-----~~g~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 186 DVLAAWL-----SGGKTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred HHHHHHh-----hcCCEEEEECCCCccHHHHHHHHHHh
Confidence 4455554 34568999999999999999999853
No 441
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.69 E-value=0.0013 Score=43.20 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
..-.+.++|++|+|||++++.+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999843
No 442
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=3.2e-05 Score=54.92 Aligned_cols=28 Identities=39% Similarity=0.565 Sum_probs=24.1
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...++ .++|+|++|+|||||++.+.+
T Consensus 20 s~~i~~g-~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 20 SLTLGPG-MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred eEEEcCC-cEEEECCCCCCHHHHHHHHhC
Confidence 3555667 899999999999999999985
No 443
>PRK04195 replication factor C large subunit; Provisional
Probab=97.66 E-value=0.00081 Score=53.83 Aligned_cols=37 Identities=32% Similarity=0.517 Sum_probs=28.2
Q ss_pred HHHHHHHHhhccCC-ceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLFFKQ-EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+..|+.++.... .-.+.+.|++|+||||+++.+.+
T Consensus 24 ~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 24 EQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 45667776654322 45678999999999999999984
No 444
>PRK06696 uridine kinase; Validated
Probab=97.65 E-value=0.00012 Score=52.60 Aligned_cols=38 Identities=16% Similarity=0.379 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+.+.++..+......+-|+|-|.+|||||||.+.+..
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45666677665667789999999999999999998873
No 445
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.65 E-value=5e-05 Score=47.70 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=22.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+....+-.++++|++|+|||||++.+.
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 444566778999999999999999875
No 446
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.64 E-value=5.5e-05 Score=54.03 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=23.9
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-+++|+|++|+|||||++-+.+
T Consensus 48 f~i~~Ge~vGiiG~NGaGKSTLlkliaG 75 (249)
T COG1134 48 FEIYKGERVGIIGHNGAGKSTLLKLIAG 75 (249)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4456677899999999999999998874
No 447
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.64 E-value=4e-05 Score=58.15 Aligned_cols=29 Identities=38% Similarity=0.495 Sum_probs=23.6
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++.+.++=-++++||+||||||+++.+.+
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34455655678999999999999999984
No 448
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=4.2e-05 Score=60.40 Aligned_cols=28 Identities=14% Similarity=0.464 Sum_probs=25.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++.++++-||+|+|++||||||+++.++
T Consensus 372 sf~I~kGekVaIvG~nGsGKSTilr~Ll 399 (591)
T KOG0057|consen 372 SFTIPKGEKVAIVGSNGSGKSTILRLLL 399 (591)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 5677889999999999999999999998
No 449
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.00018 Score=55.59 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+++..|+++|--|+||||.+-+|.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA 121 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLA 121 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHH
Confidence 456779999999999999988876
No 450
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.63 E-value=0.0029 Score=43.65 Aligned_cols=67 Identities=16% Similarity=0.064 Sum_probs=45.8
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
..+.+.++|||+.... .....+..+|.+++++..+. .+.......+..+.. .+.|+.+|+||+|...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRH----FGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCc
Confidence 5678999999965322 23455678999999998874 355555554444332 2567899999999754
No 451
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.62 E-value=0.00012 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+..-++|.|++|+|||||++.+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999998873
No 452
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.62 E-value=5.1e-05 Score=53.96 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.++++=.|+|+|++|+|||||++.+.+
T Consensus 25 l~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 25 LEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 4556677799999999999999999974
No 453
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00049 Score=57.32 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+--++++|++|+||||.+.++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 44679999999999999999883
No 454
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.62 E-value=5.5e-05 Score=53.13 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=21.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+.+++.--.+++||+|||||||++.+.
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHH
Confidence 344555556999999999999999886
No 455
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.61 E-value=5e-05 Score=54.20 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=25.0
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 345566778899999999999999999853
No 456
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.61 E-value=0.0002 Score=39.30 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=27.8
Q ss_pred HhccCCCEEEEEEeCCCCCChHHH--HHHHHHHhcCCCCCCCcEEEEeeCCC
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVS--RSELHDLLSKPSLNGIPLLVLGNKID 132 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~piilv~nK~D 132 (184)
...+-.++++|++|.+....+.-. ...+.++.... .+.|+++|.||+|
T Consensus 9 AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 9 ALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp GGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred HHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 334567899999999987765332 23344554432 3799999999998
No 457
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.61 E-value=1.2e-05 Score=57.34 Aligned_cols=27 Identities=41% Similarity=0.535 Sum_probs=23.3
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...++-.++++||+|+||||++|.+.
T Consensus 25 l~v~~Gei~~LIGPNGAGKTTlfNlit 51 (250)
T COG0411 25 LEVRPGEIVGLIGPNGAGKTTLFNLIT 51 (250)
T ss_pred EEEcCCeEEEEECCCCCCceeeeeeec
Confidence 455667778999999999999999887
No 458
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=5.6e-05 Score=53.77 Aligned_cols=30 Identities=37% Similarity=0.427 Sum_probs=25.3
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 455667778999999999999999999853
No 459
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.60 E-value=0.00092 Score=49.26 Aligned_cols=112 Identities=18% Similarity=0.129 Sum_probs=60.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC----CC-----CC------------CCCCCccceeeEE--------------eeC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG----GY-----SE------------DMIPTVGFNMRKV--------------TKG 62 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~----~~-----~~------------~~~~t~~~~~~~~--------------~~~ 62 (184)
+.-+++++|++|+||||++..+... .. .. .+....++..... ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3468999999999999999887621 00 00 0000111111110 112
Q ss_pred CEEEEEEeCCCcccc----hHhHHHhc--cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 63 NVTIKLWDLGGQPRF----RSMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
.+.+.++||+|.... .......+ ...+.+++|+|++.. .+........+.. --+-=++.||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 468899999996532 12222222 234668889998642 1233333333321 1234577899997553
No 460
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.60 E-value=7.6e-05 Score=56.89 Aligned_cols=60 Identities=22% Similarity=0.192 Sum_probs=39.4
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCC---CCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
-...++.+.|++||-|++||||+||+|........ ++.|.--.+.+. -.++-++|+||..
T Consensus 301 Lh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvV 363 (572)
T KOG2423|consen 301 LHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVV 363 (572)
T ss_pred hccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCcc
Confidence 34467789999999999999999999986654322 222221111111 1257788999953
No 461
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.60 E-value=5.5e-05 Score=53.81 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=25.3
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455567778999999999999999999853
No 462
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.59 E-value=7.3e-05 Score=43.25 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
|++.|++|+||||+.+.+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999973
No 463
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.59 E-value=7.8e-05 Score=52.87 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.2
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+...|+|.|++|||||||++.+..
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45778999999999999999999874
No 464
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.59 E-value=5.6e-05 Score=53.88 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 23 NFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344566778999999999999999999853
No 465
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.59 E-value=7.7e-05 Score=52.86 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.8
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+++.-|+|+|++|||||||++.+.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 35678899999999999999999974
No 466
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.59 E-value=6e-05 Score=49.94 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=17.9
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 029978 22 LSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~ 40 (184)
|.++|+|||||||+++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999997
No 467
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=7.8e-05 Score=53.85 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=25.1
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 20 DLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345567778999999999999999999853
No 468
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.58 E-value=8.4e-05 Score=52.74 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345566778899999999999999999853
No 469
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.58 E-value=7.8e-05 Score=56.28 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
+....+=-++++||+|||||||++.+.+-.
T Consensus 24 l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444555568999999999999999998533
No 470
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.57 E-value=8.3e-05 Score=52.57 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=24.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45566778999999999999999999853
No 471
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.57 E-value=8.8e-05 Score=51.80 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 355567778899999999999999998853
No 472
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.00016 Score=55.06 Aligned_cols=42 Identities=24% Similarity=0.345 Sum_probs=27.3
Q ss_pred eCCEEEEEEeCCCcccch-HhHH-----HhccCCCEEEEEEeCCCCCC
Q 029978 61 KGNVTIKLWDLGGQPRFR-SMWE-----RYCRAVSAIVYVVDAADYDN 102 (184)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~~ 102 (184)
..++.+.+.||.|...-. .+.. .-.-..|-+|+|.|++-...
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA 228 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence 456899999999954321 1111 12345789999999986543
No 473
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.56 E-value=6.7e-05 Score=53.33 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=25.1
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++++|++|+|||||++.+.+.
T Consensus 20 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 20 DLTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345567778999999999999999999853
No 474
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.55 E-value=4.8e-05 Score=51.77 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=17.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~ 42 (184)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999844
No 475
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=7e-05 Score=53.15 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=24.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 21 FSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44566777899999999999999999853
No 476
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.55 E-value=9.7e-05 Score=52.84 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=24.4
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 45566778999999999999999998753
No 477
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.55 E-value=0.0001 Score=50.92 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.0
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
..+++-.++++|++|+|||||++.+.+-
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 4467778999999999999999998853
No 478
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.55 E-value=6.8e-05 Score=54.26 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=23.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++--++|+||+|+|||||+..+++
T Consensus 25 l~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 25 LSVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4455666789999999999999999995
No 479
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.55 E-value=9.7e-05 Score=51.84 Aligned_cols=30 Identities=30% Similarity=0.344 Sum_probs=25.2
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345567778999999999999999999854
No 480
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.55 E-value=6.8e-05 Score=53.31 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=24.4
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 22 ISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44566778899999999999999999853
No 481
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.54 E-value=9.6e-05 Score=52.63 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=25.3
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++++|++|+|||||++.+.+-
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345567778999999999999999999854
No 482
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=7.4e-05 Score=53.43 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 20 SFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345566778899999999999999999853
No 483
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.54 E-value=9.5e-05 Score=52.25 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345566778999999999999999999853
No 484
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.54 E-value=8e-05 Score=50.99 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
+|.|.|++|+|||||+.++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i 20 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVI 20 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999987
No 485
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.54 E-value=0.0001 Score=51.90 Aligned_cols=30 Identities=37% Similarity=0.390 Sum_probs=25.3
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+.
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 355567788999999999999999998853
No 486
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=9.4e-05 Score=52.90 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+.
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345566777899999999999999999854
No 487
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.54 E-value=9.4e-05 Score=51.54 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=23.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+.+-.++|+|++|+|||||++.+.+
T Consensus 20 ~~v~~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 20 LAVEARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3345677899999999999999999884
No 488
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.54 E-value=7.4e-05 Score=54.23 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=24.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 22 NLNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345566778999999999999999999853
No 489
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=7.9e-05 Score=51.51 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4456677889999999999999999984
No 490
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.53 E-value=0.00011 Score=51.67 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=25.2
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+.
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 20 SFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345567778999999999999999999853
No 491
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00018 Score=49.40 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=23.9
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
|+..+++--|.|+|.+|||||||++.+.-
T Consensus 26 SL~A~~GdVisIIGsSGSGKSTfLRCiN~ 54 (256)
T COG4598 26 SLQANAGDVISIIGSSGSGKSTFLRCINF 54 (256)
T ss_pred eeecCCCCEEEEecCCCCchhHHHHHHHh
Confidence 34556677799999999999999998863
No 492
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.53 E-value=0.00011 Score=52.61 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=25.0
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+.
T Consensus 25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345566778999999999999999999853
No 493
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00011 Score=52.10 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=24.6
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..+.+-.++++|++|+|||||++++.+
T Consensus 23 sl~v~~Geiv~llG~NGaGKTTlLkti~G 51 (237)
T COG0410 23 SLEVERGEIVALLGRNGAGKTTLLKTIMG 51 (237)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34556677789999999999999999984
No 494
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.53 E-value=8.1e-05 Score=53.99 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=25.6
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+.
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 20 NLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred ceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455677778999999999999999999854
No 495
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.52 E-value=7.6e-05 Score=53.92 Aligned_cols=29 Identities=38% Similarity=0.464 Sum_probs=24.4
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...++-.++|+|++|+|||||++.+.+
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHcC
Confidence 34556677899999999999999999975
No 496
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.52 E-value=0.00012 Score=49.94 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=24.7
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|+|||||++.+.+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45567778999999999999999999854
No 497
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.52 E-value=8e-05 Score=53.50 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=25.1
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 20 SLDIPKGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345567778999999999999999999854
No 498
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.52 E-value=0.00011 Score=52.32 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=25.0
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 19 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 19 SFEVKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 355567778999999999999999998753
No 499
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.52 E-value=0.00011 Score=52.45 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=25.0
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344566777999999999999999999853
No 500
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00011 Score=53.76 Aligned_cols=30 Identities=33% Similarity=0.432 Sum_probs=25.4
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 355567778999999999999999999854
Done!