Query 029978
Match_columns 184
No_of_seqs 131 out of 1735
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 10:19:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zj6_A ADP-ribosylation factor 100.0 3E-35 1E-39 204.1 19.6 177 1-182 1-178 (187)
2 1ksh_A ARF-like protein 2; sma 100.0 2.4E-35 8E-40 204.4 19.0 172 11-183 9-181 (186)
3 2x77_A ADP-ribosylation factor 100.0 8.6E-36 2.9E-40 207.1 16.3 182 1-183 3-185 (189)
4 1moz_A ARL1, ADP-ribosylation 100.0 3.3E-35 1.1E-39 203.0 17.2 178 1-182 1-180 (183)
5 4dkx_A RAS-related protein RAB 100.0 3.9E-37 1.3E-41 217.9 7.2 159 17-181 11-175 (216)
6 1zd9_A ADP-ribosylation factor 100.0 1.2E-34 4.1E-39 201.3 18.9 169 15-183 18-186 (188)
7 1fzq_A ADP-ribosylation factor 100.0 5.8E-35 2E-39 201.9 16.3 173 10-183 5-179 (181)
8 1r8s_A ADP-ribosylation factor 100.0 2.3E-34 7.9E-39 195.4 18.6 163 20-183 1-163 (164)
9 2b6h_A ADP-ribosylation factor 100.0 9.1E-35 3.1E-39 202.7 16.4 172 10-182 20-191 (192)
10 1upt_A ARL1, ADP-ribosylation 100.0 1.2E-33 4E-38 193.0 21.4 166 17-183 5-170 (171)
11 1m2o_B GTP-binding protein SAR 100.0 1E-33 3.5E-38 197.0 19.1 162 17-179 21-189 (190)
12 4bas_A ADP-ribosylation factor 100.0 3.2E-34 1.1E-38 200.5 15.5 167 16-182 14-189 (199)
13 2h17_A ADP-ribosylation factor 100.0 1.4E-33 4.9E-38 194.7 17.0 162 17-179 19-180 (181)
14 1f6b_A SAR1; gtpases, N-termin 100.0 1.8E-33 6.2E-38 197.0 17.3 164 16-180 22-197 (198)
15 2h57_A ADP-ribosylation factor 100.0 3E-33 1E-37 194.5 16.4 167 17-183 19-188 (190)
16 3o47_A ADP-ribosylation factor 100.0 1.6E-32 5.4E-37 205.7 16.6 166 17-183 163-328 (329)
17 3oes_A GTPase rhebl1; small GT 100.0 8E-33 2.7E-37 194.0 6.8 167 12-183 17-188 (201)
18 3kkq_A RAS-related protein M-R 100.0 1.8E-32 6.2E-37 189.3 8.1 162 16-182 15-182 (183)
19 3lvq_E ARF-GAP with SH3 domain 100.0 1E-30 3.6E-35 205.8 19.2 166 17-183 320-485 (497)
20 3ihw_A Centg3; RAS, centaurin, 100.0 1.4E-31 4.7E-36 185.4 12.4 159 16-183 17-181 (184)
21 1ek0_A Protein (GTP-binding pr 100.0 2.4E-32 8.1E-37 186.2 8.0 159 18-182 2-169 (170)
22 3t5g_A GTP-binding protein RHE 100.0 2E-32 6.9E-37 188.7 7.6 162 17-183 4-170 (181)
23 1c1y_A RAS-related protein RAP 100.0 2.9E-32 9.8E-37 185.3 8.1 160 18-181 2-166 (167)
24 3q72_A GTP-binding protein RAD 100.0 8.9E-32 3E-36 182.9 9.6 160 19-184 2-166 (166)
25 2fn4_A P23, RAS-related protei 100.0 3.4E-32 1.2E-36 187.2 7.5 163 15-182 5-172 (181)
26 1u8z_A RAS-related protein RAL 100.0 4.8E-32 1.6E-36 184.2 8.1 160 18-182 3-167 (168)
27 4dsu_A GTPase KRAS, isoform 2B 100.0 4.4E-31 1.5E-35 182.9 12.1 162 17-182 2-166 (189)
28 1kao_A RAP2A; GTP-binding prot 100.0 3.7E-32 1.3E-36 184.6 6.5 160 18-182 2-166 (167)
29 1r2q_A RAS-related protein RAB 100.0 1.7E-31 5.9E-36 181.9 9.7 160 17-182 4-169 (170)
30 2atv_A RERG, RAS-like estrogen 100.0 4.2E-32 1.5E-36 189.6 6.5 165 12-182 21-191 (196)
31 2ew1_A RAS-related protein RAB 100.0 8.5E-32 2.9E-36 188.9 8.0 160 17-182 24-189 (201)
32 3q85_A GTP-binding protein REM 100.0 5.5E-32 1.9E-36 184.4 6.9 161 19-184 2-169 (169)
33 3bc1_A RAS-related protein RAB 100.0 2.6E-30 8.7E-35 179.7 15.4 162 16-182 8-185 (195)
34 1x3s_A RAS-related protein RAB 100.0 1.8E-30 6.2E-35 180.8 14.1 161 17-182 13-178 (195)
35 2fg5_A RAB-22B, RAS-related pr 100.0 5.1E-31 1.7E-35 183.6 11.1 160 17-182 21-186 (192)
36 2hup_A RAS-related protein RAB 100.0 3.2E-31 1.1E-35 186.0 10.2 160 17-182 27-193 (201)
37 1z0j_A RAB-22, RAS-related pro 100.0 2.4E-31 8.1E-36 181.3 9.0 160 17-182 4-169 (170)
38 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.7E-30 5.7E-35 178.4 13.2 163 17-183 5-175 (177)
39 2efe_B Small GTP-binding prote 100.0 3.4E-31 1.2E-35 182.4 9.7 160 17-182 10-175 (181)
40 1z0f_A RAB14, member RAS oncog 100.0 3.3E-31 1.1E-35 182.0 9.6 161 16-182 12-178 (179)
41 3reg_A RHO-like small GTPase; 100.0 1.5E-31 5.2E-36 186.4 8.0 158 17-183 21-189 (194)
42 2bov_A RAla, RAS-related prote 100.0 3.3E-31 1.1E-35 186.1 9.7 163 15-182 10-177 (206)
43 3cbq_A GTP-binding protein REM 100.0 1.2E-31 4.1E-36 187.3 7.4 163 16-183 20-189 (195)
44 1z06_A RAS-related protein RAB 100.0 1.5E-31 5.2E-36 185.7 7.8 161 17-182 18-188 (189)
45 3tkl_A RAS-related protein RAB 100.0 8.2E-31 2.8E-35 182.7 11.4 157 17-182 14-179 (196)
46 2nzj_A GTP-binding protein REM 100.0 2.2E-31 7.6E-36 182.3 8.3 160 17-182 2-169 (175)
47 1z08_A RAS-related protein RAB 100.0 1.2E-31 4.1E-36 182.8 6.8 160 17-182 4-169 (170)
48 4gzl_A RAS-related C3 botulinu 100.0 5.9E-31 2E-35 185.0 10.2 175 4-180 14-203 (204)
49 2a9k_A RAS-related protein RAL 100.0 2E-31 6.9E-36 184.3 7.7 161 17-182 16-181 (187)
50 2g6b_A RAS-related protein RAB 100.0 2.6E-31 8.8E-36 182.9 8.1 162 16-183 7-175 (180)
51 2oil_A CATX-8, RAS-related pro 100.0 8E-31 2.7E-35 182.6 10.3 160 17-182 23-188 (193)
52 2erx_A GTP-binding protein DI- 100.0 1.6E-31 5.5E-36 182.4 6.5 161 18-183 2-168 (172)
53 2bme_A RAB4A, RAS-related prot 100.0 9.4E-31 3.2E-35 181.0 10.4 160 17-182 8-173 (186)
54 2p5s_A RAS and EF-hand domain 100.0 1.6E-31 5.4E-36 187.1 6.5 166 12-183 21-198 (199)
55 3q3j_B RHO-related GTP-binding 100.0 2.3E-30 7.8E-35 183.3 12.5 160 16-182 24-203 (214)
56 1g16_A RAS-related protein SEC 100.0 1.1E-30 3.8E-35 178.0 10.4 160 18-183 2-166 (170)
57 2y8e_A RAB-protein 6, GH09086P 100.0 1.7E-31 5.9E-36 183.4 6.4 160 18-183 13-178 (179)
58 3dz8_A RAS-related protein RAB 100.0 1.1E-31 3.6E-36 186.8 5.1 157 17-182 21-186 (191)
59 2a5j_A RAS-related protein RAB 100.0 2.4E-31 8.1E-36 185.1 6.8 160 17-182 19-184 (191)
60 1z2a_A RAS-related protein RAB 100.0 2.5E-31 8.5E-36 180.9 6.6 159 17-182 3-167 (168)
61 3tw8_B RAS-related protein RAB 100.0 4.3E-31 1.5E-35 181.7 7.8 160 16-182 6-171 (181)
62 2gf9_A RAS-related protein RAB 100.0 2.5E-31 8.6E-36 184.6 6.7 157 17-182 20-185 (189)
63 2f7s_A C25KG, RAS-related prot 100.0 3.6E-31 1.2E-35 187.6 7.6 161 17-182 23-199 (217)
64 1zbd_A Rabphilin-3A; G protein 100.0 7.3E-31 2.5E-35 184.1 8.9 157 17-182 6-171 (203)
65 3t1o_A Gliding protein MGLA; G 100.0 4.5E-30 1.5E-34 179.0 12.9 158 17-182 12-192 (198)
66 2iwr_A Centaurin gamma 1; ANK 100.0 1.3E-30 4.4E-35 179.2 10.0 157 16-182 4-169 (178)
67 2il1_A RAB12; G-protein, GDP, 100.0 5E-31 1.7E-35 183.6 7.9 161 17-182 24-190 (192)
68 3c5c_A RAS-like protein 12; GD 100.0 1.4E-31 4.7E-36 185.8 4.8 160 17-182 19-186 (187)
69 2hxs_A RAB-26, RAS-related pro 100.0 2.8E-31 9.4E-36 182.4 6.3 162 17-183 4-174 (178)
70 2fu5_C RAS-related protein RAB 100.0 1.2E-31 4E-36 185.2 4.3 160 17-182 6-171 (183)
71 2bcg_Y Protein YP2, GTP-bindin 100.0 7.3E-31 2.5E-35 184.6 8.3 160 17-182 6-171 (206)
72 2ce2_X GTPase HRAS; signaling 100.0 7.4E-30 2.5E-34 172.9 12.7 160 18-182 2-165 (166)
73 2fv8_A H6, RHO-related GTP-bin 100.0 5.8E-30 2E-34 180.2 12.2 167 14-182 20-200 (207)
74 3bwd_D RAC-like GTP-binding pr 100.0 2.1E-30 7.1E-35 178.6 9.4 159 15-182 4-181 (182)
75 1ky3_A GTP-binding protein YPT 100.0 3E-30 1E-34 177.6 10.2 163 16-182 5-178 (182)
76 3clv_A RAB5 protein, putative; 100.0 3.4E-29 1.2E-33 175.4 15.6 158 17-182 5-204 (208)
77 4djt_A GTP-binding nuclear pro 100.0 7.2E-31 2.5E-35 186.1 7.0 161 17-183 9-176 (218)
78 1mh1_A RAC1; GTP-binding, GTPa 100.0 5E-30 1.7E-34 177.2 11.1 164 17-182 3-180 (186)
79 1vg8_A RAS-related protein RAB 100.0 5E-30 1.7E-34 180.3 10.9 162 17-182 6-175 (207)
80 2o52_A RAS-related protein RAB 100.0 1E-30 3.4E-35 183.3 7.2 160 17-182 23-188 (200)
81 2gco_A H9, RHO-related GTP-bin 100.0 1.1E-29 3.7E-34 178.1 12.1 164 17-182 23-200 (201)
82 2j0v_A RAC-like GTP-binding pr 100.0 1.5E-30 5E-35 183.8 7.7 158 16-182 6-180 (212)
83 3con_A GTPase NRAS; structural 100.0 1.2E-29 4.1E-34 176.1 12.2 162 17-183 19-184 (190)
84 2j1l_A RHO-related GTP-binding 100.0 6.8E-30 2.3E-34 180.8 11.0 165 17-183 32-210 (214)
85 2fh5_B SR-beta, signal recogni 100.0 7.4E-29 2.5E-33 175.3 16.3 163 17-180 5-214 (214)
86 3cpj_B GTP-binding protein YPT 100.0 2.5E-30 8.4E-35 184.1 8.6 160 17-182 11-176 (223)
87 2atx_A Small GTP binding prote 100.0 4E-29 1.4E-33 174.1 14.5 157 17-182 16-193 (194)
88 2gf0_A GTP-binding protein DI- 100.0 7.9E-30 2.7E-34 178.1 11.0 162 17-183 6-172 (199)
89 1m7b_A RND3/RHOE small GTP-bin 100.0 7.6E-30 2.6E-34 176.5 10.7 157 17-182 5-183 (184)
90 3cph_A RAS-related protein SEC 100.0 2E-29 6.8E-34 177.9 12.9 159 15-182 16-182 (213)
91 2q3h_A RAS homolog gene family 100.0 1E-29 3.4E-34 178.1 11.2 163 14-182 15-195 (201)
92 2g3y_A GTP-binding protein GEM 100.0 3.9E-30 1.3E-34 181.5 8.8 159 17-181 35-202 (211)
93 2yc2_C IFT27, small RAB-relate 100.0 7.5E-30 2.6E-34 179.3 9.5 161 17-182 18-192 (208)
94 1gwn_A RHO-related GTP-binding 100.0 1.5E-29 5.1E-34 178.0 10.8 157 17-182 26-204 (205)
95 2zej_A Dardarin, leucine-rich 100.0 8.7E-30 3E-34 176.2 7.6 162 19-182 2-178 (184)
96 3gj0_A GTP-binding nuclear pro 100.0 9.2E-30 3.2E-34 180.9 6.4 160 16-182 12-175 (221)
97 2lkc_A Translation initiation 100.0 1.1E-27 3.7E-32 164.4 16.6 163 15-183 4-172 (178)
98 3th5_A RAS-related C3 botulinu 99.9 7.4E-31 2.5E-35 184.3 0.0 174 5-180 15-203 (204)
99 3l0i_B RAS-related protein RAB 100.0 3.7E-31 1.3E-35 185.3 -2.1 158 17-183 31-197 (199)
100 2cjw_A GTP-binding protein GEM 100.0 4.8E-29 1.6E-33 173.7 7.5 159 17-181 4-171 (192)
101 3llu_A RAS-related GTP-binding 100.0 8.2E-29 2.8E-33 172.9 8.0 162 15-180 16-195 (196)
102 2gj8_A MNME, tRNA modification 100.0 2.1E-27 7.2E-32 162.6 14.0 153 17-181 2-165 (172)
103 1svi_A GTP-binding protein YSX 100.0 2E-27 6.9E-32 165.4 13.6 162 14-181 18-194 (195)
104 2wji_A Ferrous iron transport 99.9 1.5E-26 5.1E-31 157.3 16.4 149 18-181 2-164 (165)
105 2qu8_A Putative nucleolar GTP- 99.9 4.1E-27 1.4E-31 168.0 13.8 162 17-182 27-205 (228)
106 3r7w_B Gtpase2, GTP-binding pr 99.9 9E-28 3.1E-32 177.6 9.6 157 21-181 1-173 (331)
107 2cxx_A Probable GTP-binding pr 99.9 5.9E-28 2E-32 167.4 7.4 161 20-183 2-185 (190)
108 2wkq_A NPH1-1, RAS-related C3 99.9 6.9E-27 2.4E-31 175.2 12.5 166 16-183 152-331 (332)
109 2dyk_A GTP-binding protein; GT 99.9 2.6E-26 8.8E-31 155.0 13.8 148 20-180 2-160 (161)
110 3pqc_A Probable GTP-binding pr 99.9 2E-26 6.7E-31 160.2 13.1 162 15-182 19-194 (195)
111 2f9l_A RAB11B, member RAS onco 99.9 2.7E-27 9.3E-32 165.6 8.2 159 17-181 3-167 (199)
112 3iev_A GTP-binding protein ERA 99.9 8.4E-26 2.9E-30 167.9 16.1 161 16-182 7-182 (308)
113 3c5h_A Glucocorticoid receptor 99.9 1.9E-27 6.6E-32 172.4 6.9 162 16-181 16-254 (255)
114 1wf3_A GTP-binding protein; GT 99.9 9.4E-26 3.2E-30 166.9 15.3 155 18-181 6-172 (301)
115 3r7w_A Gtpase1, GTP-binding pr 99.9 2.1E-26 7.3E-31 171.0 11.5 161 18-180 2-179 (307)
116 2wjg_A FEOB, ferrous iron tran 99.9 2.5E-25 8.6E-30 154.0 13.9 151 18-183 6-170 (188)
117 4dhe_A Probable GTP-binding pr 99.9 2.2E-26 7.4E-31 163.5 8.6 164 14-182 24-211 (223)
118 1oix_A RAS-related protein RAB 99.9 2E-26 7E-31 160.2 7.3 158 17-180 27-190 (191)
119 3dpu_A RAB family protein; roc 99.9 4.1E-26 1.4E-30 181.0 8.4 156 17-182 39-208 (535)
120 2hjg_A GTP-binding protein ENG 99.9 2.9E-25 9.8E-30 172.2 12.8 160 18-182 174-349 (436)
121 3a1s_A Iron(II) transport prot 99.9 1.3E-24 4.3E-29 157.7 13.8 150 17-181 3-166 (258)
122 3b1v_A Ferrous iron uptake tra 99.9 1.2E-24 4.1E-29 158.8 12.3 148 18-181 2-163 (272)
123 4dcu_A GTP-binding protein ENG 99.9 1.6E-24 5.6E-29 168.8 12.7 160 18-182 194-369 (456)
124 3gee_A MNME, tRNA modification 99.9 3.5E-24 1.2E-28 167.0 14.4 154 17-181 231-397 (476)
125 3iby_A Ferrous iron transport 99.9 7.4E-25 2.5E-29 158.7 9.5 145 20-179 2-164 (256)
126 3ohm_A Guanine nucleotide-bind 99.9 1.1E-23 3.6E-28 156.5 15.0 135 48-182 151-318 (327)
127 3i8s_A Ferrous iron transport 99.9 1.2E-24 4.2E-29 159.1 9.7 149 18-181 2-168 (274)
128 3sjy_A Translation initiation 99.9 1E-23 3.5E-28 162.0 14.1 163 16-181 5-191 (403)
129 2e87_A Hypothetical protein PH 99.9 3.5E-23 1.2E-27 156.7 16.7 159 17-182 165-336 (357)
130 1xzp_A Probable tRNA modificat 99.9 1.8E-23 6.1E-28 163.1 15.1 152 17-181 241-404 (482)
131 1nrj_B SR-beta, signal recogni 99.9 3E-25 1E-29 157.1 4.0 119 15-138 8-137 (218)
132 1mky_A Probable GTP-binding pr 99.9 2E-23 6.8E-28 162.0 14.0 150 21-181 3-165 (439)
133 3k53_A Ferrous iron transport 99.9 7.3E-23 2.5E-27 149.6 15.4 151 18-182 2-166 (271)
134 1cip_A Protein (guanine nucleo 99.9 3.8E-23 1.3E-27 155.6 14.1 133 50-182 179-344 (353)
135 1s0u_A EIF-2-gamma, translatio 99.9 9.1E-23 3.1E-27 156.9 16.5 160 17-181 6-197 (408)
136 1lnz_A SPO0B-associated GTP-bi 99.9 3.8E-24 1.3E-28 160.5 8.3 157 21-183 160-331 (342)
137 1ega_A Protein (GTP-binding pr 99.9 3.4E-23 1.1E-27 153.4 12.8 156 17-181 6-174 (301)
138 1mky_A Probable GTP-binding pr 99.9 7.1E-23 2.4E-27 158.9 14.7 159 19-182 180-355 (439)
139 4fid_A G protein alpha subunit 99.9 3.5E-23 1.2E-27 154.3 12.0 132 50-181 147-327 (340)
140 3geh_A MNME, tRNA modification 99.9 4.8E-23 1.6E-27 160.1 12.9 152 17-182 222-384 (462)
141 1zcb_A G alpha I/13; GTP-bindi 99.9 7.6E-23 2.6E-27 154.4 13.6 125 58-182 195-353 (362)
142 2hjg_A GTP-binding protein ENG 99.9 2.8E-23 9.6E-28 161.1 11.0 150 20-181 4-164 (436)
143 1wb1_A Translation elongation 99.9 2.8E-23 9.5E-28 162.5 10.6 160 17-181 17-188 (482)
144 1kk1_A EIF2gamma; initiation o 99.9 7.5E-23 2.6E-27 157.5 12.6 160 17-181 8-199 (410)
145 2ywe_A GTP-binding protein LEP 99.9 4E-22 1.4E-26 158.6 16.5 159 17-182 4-184 (600)
146 3tr5_A RF-3, peptide chain rel 99.9 3E-22 1E-26 157.9 14.9 115 17-136 11-149 (528)
147 3qq5_A Small GTP-binding prote 99.9 3E-23 1E-27 159.4 8.9 153 17-181 32-195 (423)
148 3cb4_D GTP-binding protein LEP 99.9 6.9E-22 2.4E-26 157.5 16.6 155 18-182 3-182 (599)
149 2ged_A SR-beta, signal recogni 99.9 2E-23 6.9E-28 145.0 6.9 126 16-146 45-181 (193)
150 3p26_A Elongation factor 1 alp 99.9 4.1E-23 1.4E-27 161.9 9.3 154 16-171 30-227 (483)
151 2elf_A Protein translation elo 99.9 1.7E-22 6E-27 153.2 12.0 148 21-181 23-179 (370)
152 3j2k_7 ERF3, eukaryotic polype 99.9 1.4E-22 4.7E-27 157.1 11.5 154 17-174 15-217 (439)
153 3izy_P Translation initiation 99.9 6.9E-24 2.4E-28 166.8 4.0 160 17-181 2-167 (537)
154 1zun_B Sulfate adenylate trans 99.9 1.2E-21 4.3E-26 151.7 15.1 158 10-172 15-214 (434)
155 2xtp_A GTPase IMAP family memb 99.9 4.4E-22 1.5E-26 144.6 11.7 160 17-182 20-208 (260)
156 2qtf_A Protein HFLX, GTP-bindi 99.9 4.8E-22 1.6E-26 150.4 12.1 157 18-182 177-354 (364)
157 4dcu_A GTP-binding protein ENG 99.9 1.6E-22 5.4E-27 157.6 9.7 151 19-181 23-184 (456)
158 2c78_A Elongation factor TU-A; 99.9 5.2E-22 1.8E-26 152.6 12.0 160 17-181 9-211 (405)
159 1d2e_A Elongation factor TU (E 99.9 3.5E-22 1.2E-26 153.2 10.5 159 18-181 2-194 (397)
160 2aka_B Dynamin-1; fusion prote 99.9 2.3E-21 7.8E-26 143.4 14.5 172 3-179 7-250 (299)
161 1jny_A EF-1-alpha, elongation 99.9 2.4E-22 8.1E-27 155.7 8.7 151 17-172 4-203 (435)
162 2xtz_A Guanine nucleotide-bind 99.9 2.1E-22 7.3E-27 151.4 7.2 121 62-182 181-345 (354)
163 2h5e_A Peptide chain release f 99.9 6.5E-21 2.2E-25 150.4 15.4 116 17-137 11-150 (529)
164 3lxw_A GTPase IMAP family memb 99.9 8E-21 2.7E-25 137.0 14.1 165 17-183 19-209 (247)
165 1zo1_I IF2, translation initia 99.9 1E-22 3.4E-27 159.0 4.0 157 17-179 2-164 (501)
166 3lxx_A GTPase IMAP family memb 99.9 4.8E-21 1.6E-25 137.5 12.2 165 16-182 26-214 (239)
167 3izq_1 HBS1P, elongation facto 99.9 6.2E-22 2.1E-26 158.6 7.8 154 17-172 165-362 (611)
168 1azs_C GS-alpha; complex (lyas 99.9 2.3E-21 7.7E-26 147.6 10.5 123 60-182 213-385 (402)
169 1g7s_A Translation initiation 99.9 3.5E-21 1.2E-25 153.6 11.7 159 18-181 4-217 (594)
170 1r5b_A Eukaryotic peptide chai 99.8 4.5E-22 1.5E-26 155.3 4.8 154 14-173 38-243 (467)
171 3t5d_A Septin-7; GTP-binding p 99.8 4.1E-21 1.4E-25 140.5 9.1 157 18-180 7-202 (274)
172 3avx_A Elongation factor TS, e 99.8 1.6E-20 5.6E-25 156.7 13.3 160 17-181 294-485 (1289)
173 1pui_A ENGB, probable GTP-bind 99.8 1.1E-20 3.8E-25 132.8 9.9 160 14-182 21-199 (210)
174 1f60_A Elongation factor EEF1A 99.8 1.7E-21 5.7E-26 151.8 6.1 151 17-171 5-201 (458)
175 1dar_A EF-G, elongation factor 99.8 9E-20 3.1E-24 148.1 16.3 115 17-136 10-144 (691)
176 3mca_A HBS1, elongation factor 99.8 6.7E-23 2.3E-27 163.7 -2.2 160 17-180 175-395 (592)
177 2dy1_A Elongation factor G; tr 99.8 2.1E-19 7.3E-24 145.5 17.5 117 13-134 3-139 (665)
178 1jwy_B Dynamin A GTPase domain 99.8 1.8E-19 6.1E-24 134.2 14.0 175 3-182 6-262 (315)
179 2xex_A Elongation factor G; GT 99.8 6.2E-19 2.1E-23 143.3 17.4 117 15-136 6-142 (693)
180 3def_A T7I23.11 protein; chlor 99.8 2.4E-19 8.2E-24 130.3 13.2 118 17-135 34-165 (262)
181 2qag_A Septin-2, protein NEDD5 99.8 9.6E-21 3.3E-25 143.3 5.3 158 17-181 35-232 (361)
182 2rdo_7 EF-G, elongation factor 99.8 1E-18 3.5E-23 142.2 17.4 116 16-136 7-149 (704)
183 2j69_A Bacterial dynamin-like 99.8 4.4E-19 1.5E-23 144.2 14.7 162 16-181 66-324 (695)
184 3vqt_A RF-3, peptide chain rel 99.8 3.1E-18 1.1E-22 135.7 17.4 115 17-136 29-167 (548)
185 1udx_A The GTP-binding protein 99.8 9.7E-19 3.3E-23 134.0 11.2 160 18-183 156-326 (416)
186 2x2e_A Dynamin-1; nitration, h 99.8 8.1E-19 2.8E-23 132.6 10.5 171 3-178 12-254 (353)
187 1h65_A Chloroplast outer envel 99.8 6.2E-18 2.1E-22 123.4 14.6 119 17-136 37-169 (270)
188 3t34_A Dynamin-related protein 99.8 7.4E-19 2.5E-23 133.2 8.1 150 20-176 35-255 (360)
189 3p32_A Probable GTPase RV1496/ 99.7 5E-18 1.7E-22 128.3 7.3 108 62-181 170-283 (355)
190 1n0u_A EF-2, elongation factor 99.7 6.7E-18 2.3E-22 139.8 7.6 114 17-135 17-164 (842)
191 1wxq_A GTP-binding protein; st 99.7 9.5E-19 3.3E-23 133.7 1.1 81 20-100 1-114 (397)
192 3j25_A Tetracycline resistance 99.7 1.1E-17 3.9E-22 134.8 6.9 157 20-181 3-238 (638)
193 2qpt_A EH domain-containing pr 99.7 7.6E-17 2.6E-21 127.9 11.0 123 18-144 64-241 (550)
194 2qnr_A Septin-2, protein NEDD5 99.7 9.2E-18 3.1E-22 124.1 4.9 155 17-182 16-214 (301)
195 2wsm_A Hydrogenase expression/ 99.7 3.4E-17 1.2E-21 115.8 7.7 151 17-182 28-214 (221)
196 1u0l_A Probable GTPase ENGC; p 99.7 2.5E-18 8.5E-23 127.2 1.7 133 34-178 32-169 (301)
197 2www_A Methylmalonic aciduria 99.7 1E-16 3.6E-21 120.7 10.5 108 62-181 165-278 (349)
198 4fn5_A EF-G 1, elongation fact 99.7 8.5E-16 2.9E-20 125.4 15.6 116 16-136 10-152 (709)
199 3zvr_A Dynamin-1; hydrolase, D 99.7 4E-15 1.4E-19 121.0 15.9 171 3-178 32-274 (772)
200 2p67_A LAO/AO transport system 99.7 9.4E-16 3.2E-20 115.3 11.4 156 14-181 51-260 (341)
201 2qag_C Septin-7; cell cycle, c 99.6 1.6E-16 5.3E-21 122.0 6.3 157 18-180 30-225 (418)
202 1jal_A YCHF protein; nucleotid 99.6 4.3E-15 1.5E-19 111.8 13.9 81 19-99 2-108 (363)
203 1yrb_A ATP(GTP)binding protein 99.6 3.5E-16 1.2E-20 113.4 6.3 117 64-181 109-256 (262)
204 3l82_B F-box only protein 4; T 99.6 3.3E-15 1.1E-19 103.1 10.0 173 9-183 6-224 (227)
205 2hf9_A Probable hydrogenase ni 99.6 2.2E-15 7.4E-20 106.9 9.3 153 17-184 36-226 (226)
206 4a9a_A Ribosome-interacting GT 99.6 2E-14 6.7E-19 108.7 13.5 112 20-133 73-194 (376)
207 2qm8_A GTPase/ATPase; G protei 99.6 2.9E-14 9.8E-19 107.0 11.5 157 13-181 49-260 (337)
208 2dby_A GTP-binding protein; GD 99.5 9.6E-14 3.3E-18 104.9 12.3 80 20-99 2-111 (368)
209 3l2o_B F-box only protein 4; s 99.5 7E-14 2.4E-18 101.0 8.1 111 71-183 194-309 (312)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 2.9E-12 9.9E-17 97.4 7.9 87 16-102 19-131 (396)
211 2yv5_A YJEQ protein; hydrolase 99.2 6.5E-12 2.2E-16 92.9 4.2 96 74-178 66-165 (302)
212 2j37_W Signal recognition part 99.1 7.1E-11 2.4E-15 92.5 6.7 154 18-179 100-310 (504)
213 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 5.7E-10 1.9E-14 84.9 10.7 83 17-99 18-127 (392)
214 1tq4_A IIGP1, interferon-induc 99.1 1.9E-09 6.4E-14 82.6 12.6 157 17-182 67-253 (413)
215 3ec1_A YQEH GTPase; atnos1, at 99.0 5.8E-11 2E-15 90.1 2.6 124 4-137 149-290 (369)
216 3h2y_A GTPase family protein; 99.0 9.8E-11 3.3E-15 88.8 2.6 125 4-138 147-290 (368)
217 3h2y_A GTPase family protein; 99.0 2.2E-10 7.5E-15 86.9 2.7 102 73-181 55-159 (368)
218 2qag_B Septin-6, protein NEDD5 99.0 3.3E-09 1.1E-13 81.4 9.0 31 13-43 34-66 (427)
219 3sop_A Neuronal-specific septi 98.9 4.3E-09 1.5E-13 76.5 8.5 112 19-136 2-155 (270)
220 3ec1_A YQEH GTPase; atnos1, at 98.9 4.9E-10 1.7E-14 85.0 2.9 101 74-181 58-161 (369)
221 1puj_A YLQF, conserved hypothe 98.9 7.1E-09 2.4E-13 75.8 7.5 102 68-181 3-105 (282)
222 1puj_A YLQF, conserved hypothe 98.7 4E-08 1.4E-12 71.8 7.2 56 17-75 118-176 (282)
223 2v3c_C SRP54, signal recogniti 98.7 1.7E-09 5.7E-14 83.5 -1.0 154 19-180 99-309 (432)
224 3cnl_A YLQF, putative uncharac 98.6 1.4E-08 4.7E-13 73.5 3.3 54 20-76 100-156 (262)
225 1f5n_A Interferon-induced guan 98.5 4.3E-07 1.5E-11 72.5 8.4 67 8-75 28-102 (592)
226 3szr_A Interferon-induced GTP- 98.5 8.8E-07 3E-11 71.3 10.2 23 21-43 47-69 (608)
227 3dm5_A SRP54, signal recogniti 98.5 1.1E-07 3.8E-12 73.3 4.6 111 19-136 100-254 (443)
228 3cnl_A YLQF, putative uncharac 98.4 1.3E-07 4.5E-12 68.3 2.5 93 71-178 4-97 (262)
229 3kl4_A SRP54, signal recogniti 98.2 7.3E-07 2.5E-11 68.7 3.2 66 63-135 179-252 (433)
230 1j8m_F SRP54, signal recogniti 98.1 3.3E-06 1.1E-10 62.1 4.2 66 62-135 179-253 (297)
231 1t9h_A YLOQ, probable GTPase E 98.0 1.3E-06 4.3E-11 64.5 1.9 86 82-175 81-170 (307)
232 3c8u_A Fructokinase; YP_612366 98.0 5.9E-06 2E-10 57.5 4.2 36 5-41 9-44 (208)
233 3e70_C DPA, signal recognition 98.0 3E-06 1E-10 63.1 2.8 24 17-40 127-150 (328)
234 3lnc_A Guanylate kinase, GMP k 97.9 2.5E-06 8.7E-11 60.3 1.8 42 1-42 9-51 (231)
235 3ec2_A DNA replication protein 97.9 9.7E-06 3.3E-10 55.0 4.1 38 4-41 23-60 (180)
236 1rz3_A Hypothetical protein rb 97.9 2.2E-05 7.4E-10 54.3 5.4 38 4-41 7-44 (201)
237 1ye8_A Protein THEP1, hypothet 97.8 9.1E-06 3.1E-10 55.2 3.1 22 20-41 1-22 (178)
238 1htw_A HI0065; nucleotide-bind 97.8 2.7E-05 9.2E-10 51.8 5.2 33 11-43 25-57 (158)
239 3tr0_A Guanylate kinase, GMP k 97.8 1.4E-05 4.6E-10 55.3 3.6 26 17-42 5-30 (205)
240 2xxa_A Signal recognition part 97.8 8E-05 2.7E-09 57.6 8.0 67 62-136 182-255 (433)
241 1z6g_A Guanylate kinase; struc 97.8 9.3E-06 3.2E-10 57.0 2.6 30 13-42 17-46 (218)
242 1bif_A 6-phosphofructo-2-kinas 97.7 4.8E-06 1.6E-10 65.1 0.5 85 15-100 35-133 (469)
243 3tif_A Uncharacterized ABC tra 97.7 1.9E-05 6.6E-10 56.0 3.3 28 14-41 26-53 (235)
244 1zp6_A Hypothetical protein AT 97.7 2.6E-05 8.8E-10 53.2 3.9 27 16-42 6-32 (191)
245 2rcn_A Probable GTPase ENGC; Y 97.7 6.3E-05 2.2E-09 56.6 6.2 84 84-176 127-213 (358)
246 1lvg_A Guanylate kinase, GMP k 97.7 1.6E-05 5.6E-10 54.9 2.7 24 18-41 3-26 (198)
247 4gp7_A Metallophosphoesterase; 97.7 1.5E-05 5.3E-10 53.6 2.5 27 14-40 4-30 (171)
248 3ney_A 55 kDa erythrocyte memb 97.7 2.8E-05 9.5E-10 53.6 3.6 31 11-41 11-41 (197)
249 2jeo_A Uridine-cytidine kinase 97.7 2.6E-05 8.9E-10 55.6 3.6 29 13-41 19-47 (245)
250 1kgd_A CASK, peripheral plasma 97.7 2.6E-05 8.9E-10 52.9 3.4 23 19-41 5-27 (180)
251 3q5d_A Atlastin-1; G protein, 97.7 5.4E-05 1.9E-09 58.6 5.5 24 18-41 66-89 (447)
252 2pcj_A ABC transporter, lipopr 97.7 2.3E-05 7.7E-10 55.3 3.1 28 14-41 25-52 (224)
253 3aez_A Pantothenate kinase; tr 97.7 5.7E-05 1.9E-09 55.9 5.4 26 16-41 87-112 (312)
254 2cbz_A Multidrug resistance-as 97.7 2.1E-05 7.1E-10 55.9 2.7 28 14-41 26-53 (237)
255 1b0u_A Histidine permease; ABC 97.7 2.1E-05 7.3E-10 56.7 2.8 28 14-41 27-54 (262)
256 1znw_A Guanylate kinase, GMP k 97.7 2.7E-05 9.3E-10 54.0 3.2 28 15-42 16-43 (207)
257 3gfo_A Cobalt import ATP-bindi 97.6 2E-05 6.8E-10 57.3 2.4 28 14-41 29-56 (275)
258 1odf_A YGR205W, hypothetical 3 97.6 8E-05 2.8E-09 54.5 5.6 36 5-40 14-52 (290)
259 1mv5_A LMRA, multidrug resista 97.6 3.5E-05 1.2E-09 54.9 3.6 28 14-41 23-50 (243)
260 2ff7_A Alpha-hemolysin translo 97.6 2.2E-05 7.4E-10 56.2 2.4 29 14-42 30-58 (247)
261 2olj_A Amino acid ABC transpor 97.6 2.5E-05 8.6E-10 56.4 2.8 28 14-41 45-72 (263)
262 3asz_A Uridine kinase; cytidin 97.6 3.4E-05 1.2E-09 53.5 3.4 25 17-41 4-28 (211)
263 4g1u_C Hemin import ATP-bindin 97.6 3.2E-05 1.1E-09 55.9 3.3 28 14-41 32-59 (266)
264 2pze_A Cystic fibrosis transme 97.6 2.4E-05 8.2E-10 55.3 2.5 29 14-42 29-57 (229)
265 2zu0_C Probable ATP-dependent 97.6 3.1E-05 1E-09 56.1 3.1 29 14-42 41-69 (267)
266 3a00_A Guanylate kinase, GMP k 97.6 3.1E-05 1E-09 52.9 2.9 20 22-41 4-23 (186)
267 1sgw_A Putative ABC transporte 97.6 2E-05 6.7E-10 55.2 1.9 28 14-41 30-57 (214)
268 1g6h_A High-affinity branched- 97.6 3.3E-05 1.1E-09 55.6 3.2 29 14-42 28-56 (257)
269 2v9p_A Replication protein E1; 97.6 3.7E-05 1.3E-09 56.6 3.4 29 13-41 120-148 (305)
270 2j41_A Guanylate kinase; GMP, 97.6 4.1E-05 1.4E-09 52.8 3.5 27 17-43 4-30 (207)
271 2ghi_A Transport protein; mult 97.6 2.9E-05 9.8E-10 56.0 2.7 29 14-42 41-69 (260)
272 2d2e_A SUFC protein; ABC-ATPas 97.6 2.9E-05 1E-09 55.6 2.8 28 14-41 24-51 (250)
273 2qi9_C Vitamin B12 import ATP- 97.6 2.7E-05 9.2E-10 55.8 2.5 28 14-41 21-48 (249)
274 1vpl_A ABC transporter, ATP-bi 97.6 4E-05 1.4E-09 55.1 3.4 29 14-42 36-64 (256)
275 2onk_A Molybdate/tungstate ABC 97.6 4.6E-05 1.6E-09 54.3 3.6 28 14-42 20-47 (240)
276 2ixe_A Antigen peptide transpo 97.6 3.1E-05 1.1E-09 56.1 2.7 29 14-42 40-68 (271)
277 2ihy_A ABC transporter, ATP-bi 97.6 3.7E-05 1.3E-09 56.0 3.1 29 14-42 42-70 (279)
278 1ji0_A ABC transporter; ATP bi 97.6 3.8E-05 1.3E-09 54.7 3.0 28 14-41 27-54 (240)
279 1s96_A Guanylate kinase, GMP k 97.6 4.5E-05 1.5E-09 53.5 3.3 26 17-42 14-39 (219)
280 3vaa_A Shikimate kinase, SK; s 97.6 5.1E-05 1.8E-09 52.3 3.5 28 13-40 19-46 (199)
281 2yz2_A Putative ABC transporte 97.6 3.6E-05 1.2E-09 55.7 2.7 28 14-41 28-55 (266)
282 2nq2_C Hypothetical ABC transp 97.6 3.2E-05 1.1E-09 55.5 2.4 29 14-42 26-54 (253)
283 3tau_A Guanylate kinase, GMP k 97.5 6E-05 2.1E-09 52.4 3.7 26 17-42 6-31 (208)
284 1y63_A LMAJ004144AAA protein; 97.5 6.6E-05 2.3E-09 51.1 3.6 29 13-41 4-32 (184)
285 2bbs_A Cystic fibrosis transme 97.5 4.8E-05 1.6E-09 55.7 2.7 28 14-41 59-86 (290)
286 3tui_C Methionine import ATP-b 97.5 7.4E-05 2.5E-09 56.3 3.7 29 14-42 49-77 (366)
287 2ffh_A Protein (FFH); SRP54, s 97.5 9.1E-05 3.1E-09 57.0 4.2 22 19-40 98-119 (425)
288 3uie_A Adenylyl-sulfate kinase 97.5 8.8E-05 3E-09 51.1 3.8 28 14-41 20-47 (200)
289 2bbw_A Adenylate kinase 4, AK4 97.5 7.1E-05 2.4E-09 53.3 3.4 23 18-40 26-48 (246)
290 4eun_A Thermoresistant glucoki 97.5 8E-05 2.7E-09 51.3 3.5 25 17-41 27-51 (200)
291 3fvq_A Fe(3+) IONS import ATP- 97.5 8E-05 2.7E-09 56.1 3.6 29 14-42 25-53 (359)
292 3nh6_A ATP-binding cassette SU 97.5 3.1E-05 1.1E-09 57.1 1.4 28 14-41 75-102 (306)
293 2eyu_A Twitching motility prot 97.5 0.00011 3.8E-09 52.9 4.2 26 16-41 22-47 (261)
294 3tqc_A Pantothenate kinase; bi 97.5 0.00015 5E-09 53.8 4.9 25 17-41 90-114 (321)
295 1kag_A SKI, shikimate kinase I 97.5 7.5E-05 2.6E-09 50.0 3.1 22 20-41 5-26 (173)
296 3b85_A Phosphate starvation-in 97.4 6.4E-05 2.2E-09 52.3 2.7 26 17-42 20-45 (208)
297 2bdt_A BH3686; alpha-beta prot 97.4 7.9E-05 2.7E-09 50.8 3.0 21 21-41 4-24 (189)
298 2pjz_A Hypothetical protein ST 97.4 8.1E-05 2.8E-09 53.7 3.1 29 14-43 26-54 (263)
299 1knq_A Gluconate kinase; ALFA/ 97.4 0.00012 4E-09 49.2 3.7 24 18-41 7-30 (175)
300 3cm0_A Adenylate kinase; ATP-b 97.4 0.00012 3.9E-09 49.7 3.6 23 18-40 3-25 (186)
301 3rlf_A Maltose/maltodextrin im 97.4 0.00011 3.7E-09 55.8 3.7 29 14-42 24-52 (381)
302 2yyz_A Sugar ABC transporter, 97.4 0.00011 3.7E-09 55.4 3.6 29 14-42 24-52 (359)
303 2i3b_A HCR-ntpase, human cance 97.4 8.8E-05 3E-09 50.8 2.9 21 21-41 3-23 (189)
304 3lw7_A Adenylate kinase relate 97.4 9.9E-05 3.4E-09 49.3 3.2 20 20-39 2-21 (179)
305 2qor_A Guanylate kinase; phosp 97.4 8.5E-05 2.9E-09 51.4 2.9 25 17-41 10-34 (204)
306 1ex7_A Guanylate kinase; subst 97.4 9.5E-05 3.3E-09 50.5 3.0 20 22-41 4-23 (186)
307 2it1_A 362AA long hypothetical 97.4 0.00011 3.9E-09 55.3 3.7 29 14-42 24-52 (362)
308 1z47_A CYSA, putative ABC-tran 97.4 0.0001 3.5E-09 55.4 3.4 29 14-42 36-64 (355)
309 2rcn_A Probable GTPase ENGC; Y 97.4 0.0001 3.5E-09 55.4 3.3 25 19-43 215-239 (358)
310 2qt1_A Nicotinamide riboside k 97.4 0.00014 4.7E-09 50.3 3.8 25 17-41 19-43 (207)
311 4e22_A Cytidylate kinase; P-lo 97.4 0.00013 4.3E-09 52.3 3.6 25 16-40 24-48 (252)
312 3kb2_A SPBC2 prophage-derived 97.4 0.00011 3.9E-09 49.0 3.2 20 21-40 3-22 (173)
313 1cke_A CK, MSSA, protein (cyti 97.4 0.00013 4.3E-09 51.2 3.5 23 19-41 5-27 (227)
314 1v43_A Sugar-binding transport 97.4 0.00013 4.3E-09 55.3 3.7 29 14-42 32-60 (372)
315 2ehv_A Hypothetical protein PH 97.3 0.00011 3.8E-09 52.1 3.0 24 17-40 28-51 (251)
316 2if2_A Dephospho-COA kinase; a 97.3 0.00013 4.4E-09 50.3 3.3 21 21-41 3-23 (204)
317 3b9q_A Chloroplast SRP recepto 97.3 0.00014 4.9E-09 53.5 3.6 24 17-40 98-121 (302)
318 4dzz_A Plasmid partitioning pr 97.3 0.0036 1.2E-07 42.8 10.6 81 63-147 75-158 (206)
319 1ly1_A Polynucleotide kinase; 97.3 0.00015 5.2E-09 48.7 3.5 22 20-41 3-24 (181)
320 1jjv_A Dephospho-COA kinase; P 97.3 0.00015 5.1E-09 50.1 3.5 22 20-41 3-24 (206)
321 1g29_1 MALK, maltose transport 97.3 0.00013 4.5E-09 55.2 3.4 29 14-42 24-52 (372)
322 3fb4_A Adenylate kinase; psych 97.3 0.00014 4.6E-09 50.7 3.2 21 20-40 1-21 (216)
323 3gd7_A Fusion complex of cysti 97.3 0.00012 4E-09 55.8 3.0 28 14-41 42-69 (390)
324 1sq5_A Pantothenate kinase; P- 97.3 0.00015 5.3E-09 53.4 3.6 25 17-41 78-102 (308)
325 2rhm_A Putative kinase; P-loop 97.3 0.00019 6.3E-09 48.9 3.7 24 18-41 4-27 (193)
326 3dl0_A Adenylate kinase; phosp 97.3 0.00014 4.9E-09 50.6 3.2 21 20-40 1-21 (216)
327 1p9r_A General secretion pathw 97.3 0.00025 8.4E-09 54.6 4.7 30 12-41 160-189 (418)
328 2cdn_A Adenylate kinase; phosp 97.3 0.00018 6.3E-09 49.4 3.7 27 15-41 16-42 (201)
329 3jvv_A Twitching mobility prot 97.3 0.00017 5.7E-09 54.4 3.6 27 15-41 119-145 (356)
330 1aky_A Adenylate kinase; ATP:A 97.3 0.00017 5.7E-09 50.4 3.4 24 17-40 2-25 (220)
331 1lw7_A Transcriptional regulat 97.3 0.00011 3.9E-09 55.4 2.7 24 19-42 170-193 (365)
332 3d31_A Sulfate/molybdate ABC t 97.3 0.0001 3.5E-09 55.3 2.4 29 14-42 21-49 (348)
333 1kht_A Adenylate kinase; phosp 97.3 0.00017 6E-09 48.9 3.3 23 19-41 3-25 (192)
334 1uj2_A Uridine-cytidine kinase 97.3 0.00018 6.2E-09 51.4 3.5 29 13-41 16-44 (252)
335 3t61_A Gluconokinase; PSI-biol 97.3 0.00015 5.3E-09 49.9 3.0 23 19-41 18-40 (202)
336 2yvu_A Probable adenylyl-sulfa 97.3 0.00022 7.6E-09 48.4 3.8 26 15-40 9-34 (186)
337 1u0l_A Probable GTPase ENGC; p 97.3 0.00017 5.7E-09 53.1 3.3 25 19-43 169-193 (301)
338 3tlx_A Adenylate kinase 2; str 97.3 0.00021 7.1E-09 50.9 3.7 24 17-40 27-50 (243)
339 1t9h_A YLOQ, probable GTPase E 97.3 4.6E-05 1.6E-09 56.2 0.3 25 18-42 172-196 (307)
340 2yv5_A YJEQ protein; hydrolase 97.3 0.00017 6E-09 53.0 3.4 22 19-40 165-186 (302)
341 2jaq_A Deoxyguanosine kinase; 97.3 0.00019 6.4E-09 49.3 3.3 21 21-41 2-22 (205)
342 1uf9_A TT1252 protein; P-loop, 97.3 0.00023 7.8E-09 48.8 3.7 27 16-42 5-31 (203)
343 2v54_A DTMP kinase, thymidylat 97.2 0.00021 7.2E-09 49.1 3.5 24 18-41 3-26 (204)
344 2plr_A DTMP kinase, probable t 97.2 0.00022 7.7E-09 49.2 3.6 24 18-41 3-26 (213)
345 2gza_A Type IV secretion syste 97.2 0.00012 4E-09 55.3 2.2 29 13-41 169-197 (361)
346 1nks_A Adenylate kinase; therm 97.2 0.00023 7.9E-09 48.3 3.5 21 21-41 3-23 (194)
347 1oxx_K GLCV, glucose, ABC tran 97.2 9.7E-05 3.3E-09 55.6 1.6 29 14-42 26-54 (353)
348 1tev_A UMP-CMP kinase; ploop, 97.2 0.00024 8.2E-09 48.3 3.5 22 19-40 3-24 (196)
349 4a74_A DNA repair and recombin 97.2 0.00021 7.1E-09 50.0 3.2 25 17-41 23-47 (231)
350 2ewv_A Twitching motility prot 97.2 0.0003 1E-08 53.3 4.2 26 16-41 133-158 (372)
351 1nn5_A Similar to deoxythymidy 97.2 0.00025 8.4E-09 49.2 3.4 25 17-41 7-31 (215)
352 1qhx_A CPT, protein (chloramph 97.2 0.00021 7.3E-09 48.0 3.0 22 20-41 4-25 (178)
353 1gvn_B Zeta; postsegregational 97.2 0.00056 1.9E-08 49.9 5.5 25 17-41 31-55 (287)
354 2og2_A Putative signal recogni 97.2 0.00024 8.3E-09 53.5 3.6 24 17-40 155-178 (359)
355 2c95_A Adenylate kinase 1; tra 97.2 0.00026 8.9E-09 48.3 3.5 24 17-40 7-30 (196)
356 2wwf_A Thymidilate kinase, put 97.2 0.00025 8.6E-09 49.0 3.4 24 18-41 9-32 (212)
357 2npi_A Protein CLP1; CLP1-PCF1 97.2 0.00018 6.3E-09 56.0 2.9 30 12-41 131-160 (460)
358 2x8a_A Nuclear valosin-contain 97.2 0.00023 7.9E-09 51.6 3.2 20 22-41 47-66 (274)
359 1ukz_A Uridylate kinase; trans 97.2 0.0003 1E-08 48.4 3.7 24 17-40 13-36 (203)
360 1np6_A Molybdopterin-guanine d 97.2 0.00025 8.4E-09 47.9 3.1 22 20-41 7-28 (174)
361 2yhs_A FTSY, cell division pro 97.2 0.00026 8.7E-09 55.4 3.5 25 16-40 290-314 (503)
362 1e4v_A Adenylate kinase; trans 97.2 0.00026 8.8E-09 49.3 3.2 21 20-40 1-21 (214)
363 3iij_A Coilin-interacting nucl 97.1 0.00024 8.2E-09 48.0 2.9 24 17-40 9-32 (180)
364 3trf_A Shikimate kinase, SK; a 97.1 0.00028 9.5E-09 47.8 3.2 22 19-40 5-26 (185)
365 1zd8_A GTP:AMP phosphotransfer 97.1 0.00027 9.4E-09 49.6 3.3 23 18-40 6-28 (227)
366 3sr0_A Adenylate kinase; phosp 97.1 0.00028 9.5E-09 49.0 3.2 21 20-40 1-21 (206)
367 1jbk_A CLPB protein; beta barr 97.1 0.00079 2.7E-08 45.3 5.5 25 17-41 41-65 (195)
368 2f1r_A Molybdopterin-guanine d 97.1 0.00012 4E-09 49.4 1.2 21 21-41 4-24 (171)
369 2vp4_A Deoxynucleoside kinase; 97.1 0.00023 8E-09 50.1 2.7 26 17-42 18-43 (230)
370 2pez_A Bifunctional 3'-phospho 97.1 0.00037 1.3E-08 47.0 3.6 24 18-41 4-27 (179)
371 2pt5_A Shikimate kinase, SK; a 97.1 0.00033 1.1E-08 46.6 3.3 21 21-41 2-22 (168)
372 2w58_A DNAI, primosome compone 97.1 0.00077 2.6E-08 46.3 5.3 22 20-41 55-76 (202)
373 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.00013 4.3E-09 54.5 1.3 30 13-42 165-194 (330)
374 2oap_1 GSPE-2, type II secreti 97.1 0.0002 6.8E-09 56.5 2.5 28 14-41 255-282 (511)
375 1vht_A Dephospho-COA kinase; s 97.1 0.00038 1.3E-08 48.5 3.6 24 18-41 3-26 (218)
376 1rj9_A FTSY, signal recognitio 97.1 0.00036 1.2E-08 51.4 3.5 23 18-40 101-123 (304)
377 1via_A Shikimate kinase; struc 97.1 0.00028 9.4E-09 47.4 2.8 20 21-40 6-25 (175)
378 1ixz_A ATP-dependent metallopr 97.1 0.00034 1.2E-08 49.9 3.4 20 22-41 52-71 (254)
379 2kjq_A DNAA-related protein; s 97.1 0.00024 8.1E-09 46.7 2.3 24 18-41 35-58 (149)
380 3kta_A Chromosome segregation 97.1 0.00033 1.1E-08 47.3 3.0 24 17-41 25-48 (182)
381 2obl_A ESCN; ATPase, hydrolase 97.1 0.00029 9.9E-09 52.9 2.9 29 14-42 66-94 (347)
382 3b5x_A Lipid A export ATP-bind 97.1 0.00038 1.3E-08 55.9 3.7 29 13-41 363-391 (582)
383 1tue_A Replication protein E1; 97.1 0.00062 2.1E-08 47.1 4.3 35 5-41 46-80 (212)
384 1zak_A Adenylate kinase; ATP:A 97.1 0.00031 1.1E-08 49.1 2.9 23 18-40 4-26 (222)
385 2pbr_A DTMP kinase, thymidylat 97.1 0.00039 1.3E-08 47.3 3.3 21 21-41 2-22 (195)
386 3b60_A Lipid A export ATP-bind 97.0 0.00036 1.2E-08 56.0 3.4 28 14-41 364-391 (582)
387 2z0h_A DTMP kinase, thymidylat 97.0 0.00039 1.3E-08 47.4 3.2 21 21-41 2-22 (197)
388 2xb4_A Adenylate kinase; ATP-b 97.0 0.0004 1.4E-08 48.7 3.3 20 21-40 2-21 (223)
389 3be4_A Adenylate kinase; malar 97.0 0.0004 1.4E-08 48.5 3.3 23 18-40 4-26 (217)
390 2p5t_B PEZT; postsegregational 97.0 0.00033 1.1E-08 50.1 2.8 25 17-41 30-54 (253)
391 1m7g_A Adenylylsulfate kinase; 97.0 0.00061 2.1E-08 47.3 4.1 27 14-40 20-46 (211)
392 2bwj_A Adenylate kinase 5; pho 97.0 0.00042 1.4E-08 47.4 3.3 24 18-41 11-34 (199)
393 2vli_A Antibiotic resistance p 97.0 0.00029 1E-08 47.5 2.3 23 18-40 4-26 (183)
394 4eaq_A DTMP kinase, thymidylat 97.0 0.00061 2.1E-08 48.1 3.9 25 17-41 24-48 (229)
395 3r20_A Cytidylate kinase; stru 97.0 0.00047 1.6E-08 48.8 3.3 24 17-40 7-30 (233)
396 2p65_A Hypothetical protein PF 97.0 0.00087 3E-08 45.0 4.6 25 17-41 41-65 (187)
397 2yl4_A ATP-binding cassette SU 97.0 0.00026 8.8E-09 57.0 2.2 28 14-41 365-392 (595)
398 3nwj_A ATSK2; P loop, shikimat 97.0 0.00031 1E-08 50.3 2.3 28 14-41 40-70 (250)
399 3bos_A Putative DNA replicatio 97.0 0.00081 2.8E-08 47.1 4.5 24 18-41 51-74 (242)
400 3qf4_B Uncharacterized ABC tra 97.0 0.0003 1E-08 56.6 2.5 28 14-41 376-403 (598)
401 1iy2_A ATP-dependent metallopr 97.0 0.00048 1.6E-08 49.9 3.3 20 22-41 76-95 (278)
402 1ak2_A Adenylate kinase isoenz 97.0 0.00056 1.9E-08 48.2 3.5 24 17-40 14-37 (233)
403 3k9g_A PF-32 protein; ssgcid, 97.0 0.014 4.7E-07 41.8 10.9 66 62-132 143-208 (267)
404 1qf9_A UMP/CMP kinase, protein 97.0 0.00064 2.2E-08 46.1 3.7 22 19-40 6-27 (194)
405 2f6r_A COA synthase, bifunctio 97.0 0.00065 2.2E-08 49.4 3.8 24 17-40 73-96 (281)
406 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00061 2.1E-08 48.9 3.6 23 19-41 4-26 (260)
407 2ze6_A Isopentenyl transferase 96.9 0.00049 1.7E-08 49.3 3.0 20 21-40 3-22 (253)
408 2chg_A Replication factor C sm 96.9 0.0012 4E-08 45.5 4.9 21 21-41 40-60 (226)
409 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00049 1.7E-08 48.1 3.0 24 17-40 21-44 (235)
410 1yqt_A RNAse L inhibitor; ATP- 96.9 0.00073 2.5E-08 53.7 4.3 27 16-42 44-70 (538)
411 1xjc_A MOBB protein homolog; s 96.9 0.00055 1.9E-08 45.9 3.0 22 20-41 5-26 (169)
412 1e6c_A Shikimate kinase; phosp 96.9 0.00054 1.8E-08 45.7 3.0 21 21-41 4-24 (173)
413 2dpy_A FLII, flagellum-specifi 96.9 0.00055 1.9E-08 53.0 3.4 29 14-42 152-180 (438)
414 1zuh_A Shikimate kinase; alpha 96.9 0.00062 2.1E-08 45.3 3.3 21 21-41 9-29 (168)
415 2iyv_A Shikimate kinase, SK; t 96.9 0.00055 1.9E-08 46.3 3.0 21 21-41 4-24 (184)
416 1svm_A Large T antigen; AAA+ f 96.9 0.00069 2.4E-08 51.4 3.7 28 14-41 164-191 (377)
417 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00061 2.1E-08 44.7 3.0 19 22-40 26-44 (149)
418 1gtv_A TMK, thymidylate kinase 96.9 0.00019 6.5E-09 49.7 0.6 20 21-40 2-21 (214)
419 2qgz_A Helicase loader, putati 96.9 0.0014 4.8E-08 48.3 5.3 36 6-41 139-174 (308)
420 3umf_A Adenylate kinase; rossm 96.9 0.00088 3E-08 46.8 3.8 23 18-40 28-50 (217)
421 3euj_A Chromosome partition pr 96.9 0.00058 2E-08 53.4 3.1 26 15-41 26-51 (483)
422 1in4_A RUVB, holliday junction 96.9 0.00055 1.9E-08 51.0 2.8 22 20-41 52-73 (334)
423 3ozx_A RNAse L inhibitor; ATP 96.9 0.00094 3.2E-08 53.0 4.3 25 18-42 24-48 (538)
424 3n70_A Transport activator; si 96.9 0.0014 4.9E-08 42.6 4.5 37 5-42 11-47 (145)
425 4a82_A Cystic fibrosis transme 96.9 0.00034 1.2E-08 56.1 1.8 28 14-41 362-389 (578)
426 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0014 4.9E-08 46.7 4.8 24 18-41 38-61 (262)
427 1yqt_A RNAse L inhibitor; ATP- 96.8 0.00073 2.5E-08 53.7 3.5 26 17-42 310-335 (538)
428 3qf4_A ABC transporter, ATP-bi 96.8 0.00035 1.2E-08 56.1 1.6 28 14-41 364-391 (587)
429 1nij_A Hypothetical protein YJ 96.8 0.00055 1.9E-08 50.7 2.6 22 21-42 6-27 (318)
430 1d2n_A N-ethylmaleimide-sensit 96.8 0.0017 5.9E-08 46.7 5.1 26 16-41 61-86 (272)
431 3end_A Light-independent proto 96.8 0.0061 2.1E-07 44.7 8.1 82 63-148 156-238 (307)
432 2grj_A Dephospho-COA kinase; T 96.8 0.0009 3.1E-08 45.9 3.4 24 18-41 11-34 (192)
433 2iw3_A Elongation factor 3A; a 96.8 0.00061 2.1E-08 57.5 2.9 31 14-44 456-486 (986)
434 2px0_A Flagellar biosynthesis 96.8 0.0018 6.2E-08 47.4 5.2 23 18-40 104-126 (296)
435 3bk7_A ABC transporter ATP-bin 96.8 0.00082 2.8E-08 54.2 3.5 26 17-42 380-405 (607)
436 3j16_B RLI1P; ribosome recycli 96.8 0.0012 4E-08 53.3 4.3 26 17-42 101-126 (608)
437 3ozx_A RNAse L inhibitor; ATP 96.8 0.00076 2.6E-08 53.6 3.2 26 17-42 292-317 (538)
438 3v9p_A DTMP kinase, thymidylat 96.8 0.00077 2.6E-08 47.5 2.9 24 17-40 23-46 (227)
439 1njg_A DNA polymerase III subu 96.8 0.0023 7.8E-08 44.6 5.3 21 21-41 47-67 (250)
440 1q3t_A Cytidylate kinase; nucl 96.8 0.001 3.5E-08 47.0 3.5 25 17-41 14-38 (236)
441 1n0w_A DNA repair protein RAD5 96.8 0.00085 2.9E-08 47.3 3.0 25 17-41 22-46 (243)
442 2cvh_A DNA repair and recombin 96.7 0.0011 3.8E-08 45.9 3.5 25 17-41 18-42 (220)
443 3bk7_A ABC transporter ATP-bin 96.7 0.0013 4.4E-08 53.1 4.0 27 16-42 114-140 (607)
444 1a7j_A Phosphoribulokinase; tr 96.7 0.00058 2E-08 49.9 1.9 25 17-41 3-27 (290)
445 1cr0_A DNA primase/helicase; R 96.7 0.0012 4E-08 48.2 3.6 28 14-41 30-57 (296)
446 3qf7_A RAD50; ABC-ATPase, ATPa 96.7 0.001 3.5E-08 50.2 3.2 24 16-40 21-44 (365)
447 2ga8_A Hypothetical 39.9 kDa p 96.7 0.0028 9.7E-08 47.5 5.5 37 4-40 8-45 (359)
448 1lv7_A FTSH; alpha/beta domain 96.7 0.001 3.5E-08 47.5 3.1 23 19-41 45-67 (257)
449 3syl_A Protein CBBX; photosynt 96.7 0.0023 7.8E-08 46.9 5.0 24 17-40 65-88 (309)
450 1fnn_A CDC6P, cell division co 96.7 0.0014 4.7E-08 49.5 3.9 37 5-41 27-66 (389)
451 3cf0_A Transitional endoplasmi 96.7 0.0018 6E-08 47.5 4.3 26 16-41 46-71 (301)
452 3h4m_A Proteasome-activating n 96.7 0.0018 6.2E-08 46.8 4.3 25 17-41 49-73 (285)
453 4f4c_A Multidrug resistance pr 96.6 0.00032 1.1E-08 61.4 0.1 28 14-41 1100-1127(1321)
454 4aby_A DNA repair protein RECN 96.6 0.0003 1E-08 53.9 -0.2 26 14-40 56-81 (415)
455 3gmt_A Adenylate kinase; ssgci 96.6 0.0015 5.2E-08 46.0 3.3 23 18-40 7-29 (230)
456 1ltq_A Polynucleotide kinase; 96.6 0.0016 5.4E-08 47.6 3.5 22 20-41 3-24 (301)
457 4b4t_K 26S protease regulatory 96.6 0.0026 8.8E-08 49.0 4.7 30 12-41 199-228 (428)
458 1vma_A Cell division protein F 96.6 0.0018 6.1E-08 47.7 3.7 23 18-40 103-125 (306)
459 3ake_A Cytidylate kinase; CMP 96.5 0.0016 5.5E-08 44.7 3.2 21 21-41 4-24 (208)
460 1nlf_A Regulatory protein REPA 96.5 0.0014 4.6E-08 47.5 3.0 24 18-41 29-52 (279)
461 1pzn_A RAD51, DNA repair and r 96.5 0.0023 7.9E-08 48.0 4.1 28 15-42 127-154 (349)
462 3j16_B RLI1P; ribosome recycli 96.5 0.0019 6.4E-08 52.1 3.7 23 21-43 380-402 (608)
463 3t15_A Ribulose bisphosphate c 96.5 0.002 6.8E-08 47.1 3.6 24 18-41 35-58 (293)
464 3qks_A DNA double-strand break 96.4 0.0019 6.6E-08 44.6 3.0 19 22-40 26-44 (203)
465 2iw3_A Elongation factor 3A; a 96.4 0.00084 2.9E-08 56.7 1.4 29 14-42 694-722 (986)
466 2qmh_A HPR kinase/phosphorylas 96.4 0.0026 8.7E-08 43.8 3.5 24 19-42 34-57 (205)
467 3co5_A Putative two-component 96.4 0.0018 6E-08 42.1 2.6 36 5-41 14-49 (143)
468 3b9p_A CG5977-PA, isoform A; A 96.4 0.0019 6.5E-08 47.1 3.0 23 19-41 54-76 (297)
469 2dr3_A UPF0273 protein PH0284; 96.4 0.002 6.8E-08 45.4 3.0 24 17-40 21-44 (247)
470 4f4c_A Multidrug resistance pr 96.4 0.0015 5.2E-08 57.2 2.8 28 14-41 439-466 (1321)
471 3cr8_A Sulfate adenylyltranfer 96.4 0.0013 4.5E-08 52.3 2.2 26 16-41 366-391 (552)
472 2qby_B CDC6 homolog 3, cell di 96.4 0.0049 1.7E-07 46.4 5.3 37 5-41 30-67 (384)
473 3te6_A Regulatory protein SIR3 96.4 0.0029 9.8E-08 46.8 3.8 36 6-41 31-67 (318)
474 2ocp_A DGK, deoxyguanosine kin 96.4 0.0027 9.2E-08 44.9 3.6 23 19-41 2-24 (241)
475 3ux8_A Excinuclease ABC, A sub 96.4 0.0011 3.6E-08 54.2 1.6 25 15-39 344-368 (670)
476 1sxj_C Activator 1 40 kDa subu 96.4 0.0046 1.6E-07 46.0 5.0 21 21-41 48-68 (340)
477 4b4t_M 26S protease regulatory 96.4 0.0037 1.3E-07 48.2 4.5 30 12-41 208-237 (434)
478 2o5v_A DNA replication and rep 96.3 0.0024 8.4E-08 48.1 3.3 26 15-41 23-48 (359)
479 3zvl_A Bifunctional polynucleo 96.3 0.0023 7.9E-08 49.2 3.2 24 18-41 257-280 (416)
480 1l8q_A Chromosomal replication 96.3 0.0021 7.3E-08 47.5 2.9 23 19-41 37-59 (324)
481 3ux8_A Excinuclease ABC, A sub 96.3 0.0014 4.8E-08 53.4 2.0 23 14-36 39-61 (670)
482 1sxj_D Activator 1 41 kDa subu 96.3 0.0035 1.2E-07 46.7 3.9 21 21-41 60-80 (353)
483 2v1u_A Cell division control p 96.3 0.0027 9.3E-08 47.7 3.3 25 17-41 42-66 (387)
484 3g5u_A MCG1178, multidrug resi 96.3 0.0016 5.4E-08 56.9 2.2 29 13-41 410-438 (1284)
485 3pfi_A Holliday junction ATP-d 96.3 0.0048 1.6E-07 45.8 4.5 37 5-41 39-77 (338)
486 1p5z_B DCK, deoxycytidine kina 96.3 0.0015 5.3E-08 46.8 1.8 25 17-41 22-46 (263)
487 1u0j_A DNA replication protein 96.2 0.0071 2.4E-07 43.5 5.1 35 7-41 89-126 (267)
488 1e69_A Chromosome segregation 96.2 0.0024 8.3E-08 47.3 2.8 23 17-40 23-45 (322)
489 2qby_A CDC6 homolog 1, cell di 96.2 0.0026 9E-08 47.7 3.0 24 18-41 44-67 (386)
490 3d3q_A TRNA delta(2)-isopenten 96.2 0.0027 9.3E-08 47.3 3.0 22 20-41 8-29 (340)
491 2h92_A Cytidylate kinase; ross 96.2 0.0025 8.7E-08 44.2 2.7 23 19-41 3-25 (219)
492 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.0066 2.3E-07 45.0 5.1 23 19-41 45-67 (322)
493 1zu4_A FTSY; GTPase, signal re 96.2 0.0036 1.2E-07 46.4 3.6 23 18-40 104-126 (320)
494 3qkt_A DNA double-strand break 96.2 0.0029 1E-07 47.2 3.0 23 17-40 22-44 (339)
495 1tf7_A KAIC; homohexamer, hexa 96.2 0.0028 9.4E-08 50.2 3.0 25 15-39 35-59 (525)
496 2a5y_B CED-4; apoptosis; HET: 96.2 0.0073 2.5E-07 48.1 5.5 38 4-41 137-174 (549)
497 4b4t_L 26S protease subunit RP 96.2 0.0057 2E-07 47.2 4.7 28 14-41 210-237 (437)
498 1c9k_A COBU, adenosylcobinamid 96.2 0.0035 1.2E-07 42.4 3.0 21 22-42 2-22 (180)
499 4fcw_A Chaperone protein CLPB; 96.2 0.0042 1.4E-07 45.4 3.8 22 20-41 48-69 (311)
500 4edh_A DTMP kinase, thymidylat 96.1 0.0042 1.4E-07 43.2 3.5 23 18-40 5-27 (213)
No 1
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3e-35 Score=204.13 Aligned_cols=177 Identities=28% Similarity=0.524 Sum_probs=145.4
Q ss_pred Cc-hHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchH
Q 029978 1 MG-LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
|| ++.++.+ ++.++.++|+++|++|||||||++++.++.+. .+.+|.+.....+...+..+.+|||||++++..
T Consensus 1 m~~~~~~~~~----~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 75 (187)
T 1zj6_A 1 MGILFTRIWR----LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRS 75 (187)
T ss_dssp -CHHHHHHHH----HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETTEEEEEEECCC----CG
T ss_pred CchHHHHHHH----hcCCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEECCEEEEEEECCCCHhHHH
Confidence 56 5556555 45578899999999999999999999988776 667788777777777889999999999999998
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEE
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCY 159 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+..+++.+|++++|+|+++.+++.....++..+.......+.|+++|+||+|+.+....+++.+.++........++++
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 155 (187)
T 1zj6_A 76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ 155 (187)
T ss_dssp GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEE
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEE
Confidence 88999999999999999999999999999988887754446899999999999987666677777766543444567899
Q ss_pred EeeeCCCCCHHHHHHHHHHHhhh
Q 029978 160 MISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
++||++|.|+++++++|.+.+..
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 156 ACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHCC
T ss_pred EccCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 2
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=2.4e-35 Score=204.36 Aligned_cols=172 Identities=31% Similarity=0.581 Sum_probs=144.1
Q ss_pred HHhhcc-CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCC
Q 029978 11 LRSLFF-KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVS 89 (184)
Q Consensus 11 ~~~~~~-~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (184)
+++++. ++.++|+++|++|+|||||++++.++. ...+.+|.+.....+......+.+|||||++.+...+..+++.+|
T Consensus 9 ~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 87 (186)
T 1ksh_A 9 LKKMKQKERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTD 87 (186)
T ss_dssp --------CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCS
T ss_pred HHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCC
Confidence 344444 788999999999999999999999877 777788888777777778899999999999999888899999999
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|+
T Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (186)
T 1ksh_A 88 GLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDL 167 (186)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCH
Confidence 99999999999999999888888877654568999999999999887677777777665444455678999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 029978 170 DTVIDWLVKHSKSK 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
+++++++.+.+.+.
T Consensus 168 ~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 168 LPGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987653
No 3
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=8.6e-36 Score=207.12 Aligned_cols=182 Identities=34% Similarity=0.582 Sum_probs=152.0
Q ss_pred Cc-hHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchH
Q 029978 1 MG-LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
|| ++.++.+|++.+..++.++|+++|++|+|||||++++.++.+.. ..+|.+.....+......+.+|||||++.+..
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 81 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETLQYKNISFEVWDLGGQTGVRP 81 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCEEEEEETTEEEEEEEECCSSSSCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEEEEEEECCEEEEEEECCCCHhHHH
Confidence 45 55667777655432788999999999999999999998777653 56777777667777889999999999999888
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEE
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCY 159 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+..+++.+|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........++++
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIV 161 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEE
Confidence 88888999999999999999999999988888887765557899999999999988767777777776555555567899
Q ss_pred EeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 160 MISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
+|||+++.|++++++++.+.+.+.
T Consensus 162 ~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 162 KSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred EccCCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999999988754
No 4
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.3e-35 Score=202.96 Aligned_cols=178 Identities=31% Similarity=0.617 Sum_probs=146.5
Q ss_pred Cc-hHHHHHHHHHhhcc-CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 1 MG-LWEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 1 ~~-~~~~~~~~~~~~~~-~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
|| ++.++. ++++. ++.++|+++|++|||||||++++.++.+ ..+.+|.+.....+...+..+.+|||||++.+.
T Consensus 1 mg~~~~~~~---~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 1 MGNIFSSMF---DKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp -CHHHHHHH---GGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEETTEEEEEEEEC----CC
T ss_pred CchHHHHHH---HHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEECCEEEEEEECCCCHhHH
Confidence 55 444443 44555 7899999999999999999999997776 566778877766677778999999999999988
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeE
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCC 158 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
..+..+++.+|++++|+|+++.+++.....++..+.......+.|+++|+||+|+.+....+++.+.++........+++
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 88889999999999999999999999999988888776555789999999999998776777887777765555566789
Q ss_pred EEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 159 YMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 159 ~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+++||++|.|++++++++.+.+.+
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 5
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=3.9e-37 Score=217.87 Aligned_cols=159 Identities=22% Similarity=0.383 Sum_probs=122.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.+||+++|++|||||||+++|..+.|...+.+|++.++.. .+...+.+.+|||+|++++..++..+++.+++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 357999999999999999999999999999999999865543 3345689999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|||++++++|..+..|+..+..... .++|++||+||+|+.+.. ..++..+... ...+++++|||++|.||+
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a~-----~~~~~~~e~SAktg~nV~ 164 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAK-----ELNVMFIETSAKAGYNVK 164 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEEBTTTTBSHH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhHHH-----HhCCeeEEEeCCCCcCHH
Confidence 99999999999999999988765433 689999999999997642 2222222111 123469999999999999
Q ss_pred HHHHHHHHHhh
Q 029978 171 TVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
++|+.|++.+.
T Consensus 165 e~F~~i~~~i~ 175 (216)
T 4dkx_A 165 QLFRRVAAALP 175 (216)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999998775
No 6
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=1.2e-34 Score=201.33 Aligned_cols=169 Identities=67% Similarity=1.172 Sum_probs=146.7
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
..++.++|+++|++|+|||||++++.++.+...+.+|.+.....++...+.+.+|||||++.+...+..+++.+|++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 34567999999999999999999999999888888999988888888899999999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+|+++.+++.....++..+.......++|+++|+||+|+.+....+++.+.++........++++++||++|.|++++++
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 177 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ 177 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHH
Confidence 99999999999988888887654446899999999999987766677777776554445567899999999999999999
Q ss_pred HHHHHhhhc
Q 029978 175 WLVKHSKSK 183 (184)
Q Consensus 175 ~i~~~~~~~ 183 (184)
+|.+.+.+.
T Consensus 178 ~l~~~~~~~ 186 (188)
T 1zd9_A 178 WLIQHSKSR 186 (188)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhh
Confidence 999987654
No 7
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=5.8e-35 Score=201.86 Aligned_cols=173 Identities=31% Similarity=0.587 Sum_probs=142.4
Q ss_pred HHHhhcc--CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccC
Q 029978 10 WLRSLFF--KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA 87 (184)
Q Consensus 10 ~~~~~~~--~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 87 (184)
+++++.. .+.++|+++|++|||||||++++.+..+ ..+.+|.+.....+....+.+.+|||||++.+...+..+++.
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 83 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFEN 83 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTT
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCC
Confidence 3445555 5789999999999999999999987643 345677776666666778999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........+++++|||++|.
T Consensus 84 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (181)
T 1fzq_A 84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE 163 (181)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCC
Confidence 99999999999999999988888887765445689999999999998776667777776654444456789999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 029978 168 NIDTVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~~ 183 (184)
|++++++++.+.+.+.
T Consensus 164 gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 164 GVQDGMNWVCKNVNAK 179 (181)
T ss_dssp THHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999887654
No 8
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=2.3e-34 Score=195.35 Aligned_cols=163 Identities=29% Similarity=0.627 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
++|+++|++|+|||||++++.++.+.. ..||.+.....++...+.+.+|||||++.+...+..+++.+|++++|+|+++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 79 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC
Confidence 589999999999999999999877764 5678887666777788999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHH
Q 029978 100 YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........+++++|||++|.|++++++++.+.
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 80 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (164)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHH
Confidence 99999988888888765545689999999999998776677777777765555556789999999999999999999998
Q ss_pred hhhc
Q 029978 180 SKSK 183 (184)
Q Consensus 180 ~~~~ 183 (184)
+.++
T Consensus 160 i~~~ 163 (164)
T 1r8s_A 160 LRNQ 163 (164)
T ss_dssp C---
T ss_pred Hhhc
Confidence 8654
No 9
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=9.1e-35 Score=202.66 Aligned_cols=172 Identities=30% Similarity=0.603 Sum_probs=143.3
Q ss_pred HHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCC
Q 029978 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVS 89 (184)
Q Consensus 10 ~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (184)
++++++.++.++|+++|++|||||||++++.++.+. ...||.+.....++...+.+.+|||||++.+...+..+++.+|
T Consensus 20 ~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp GGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred HHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 445667778999999999999999999999987765 3566777766677788899999999999999999999999999
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........+++++|||++|.|+
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999888888876654568999999999999877677788887776555556678999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
++++++|.+.+.+
T Consensus 179 ~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 179 YDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 10
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=1.2e-33 Score=193.01 Aligned_cols=166 Identities=34% Similarity=0.661 Sum_probs=144.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
++.++|+++|++|+|||||++++.++.+. ...+|.+.....+......+.+|||||++.+...+..+++.+|++++|+|
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 83 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVD 83 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEE
Confidence 56799999999999999999999987775 45677777776777778999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|++++++++
T Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (171)
T 1upt_A 84 SCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 163 (171)
T ss_dssp TTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHH
Confidence 99999999998888888766444689999999999998877777777777655555566789999999999999999999
Q ss_pred HHHhhhc
Q 029978 177 VKHSKSK 183 (184)
Q Consensus 177 ~~~~~~~ 183 (184)
.+.+.+.
T Consensus 164 ~~~i~~~ 170 (171)
T 1upt_A 164 VETLKSR 170 (171)
T ss_dssp HHHHHTC
T ss_pred HHHHhhc
Confidence 9988764
No 11
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=1e-33 Score=197.01 Aligned_cols=162 Identities=32% Similarity=0.572 Sum_probs=135.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|++|||||||++++.++.+. .+.+|.+.....+...++.+.+|||||++.+...+..+++.+|++++|+|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 99 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 99 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEE
Confidence 56789999999999999999999987764 46678777777777778999999999999998888899999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC-------cCCCceeEEEeeeCCCCCH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS-------ITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~v 169 (184)
+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++... .....+++++|||++|.|+
T Consensus 100 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 179 (190)
T 1m2o_B 100 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY 179 (190)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSH
T ss_pred CCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCH
Confidence 999999999998888887654456899999999999987666677777665432 2234568999999999999
Q ss_pred HHHHHHHHHH
Q 029978 170 DTVIDWLVKH 179 (184)
Q Consensus 170 ~~l~~~i~~~ 179 (184)
+++++++.+.
T Consensus 180 ~~l~~~l~~~ 189 (190)
T 1m2o_B 180 LEAFQWLSQY 189 (190)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 12
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=3.2e-34 Score=200.52 Aligned_cols=167 Identities=28% Similarity=0.589 Sum_probs=142.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCC-CCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSE-DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.....+|+++|++|||||||++++.++.+.. .+.+|.+.....++...+.+.+|||||++.+...+..+++.+|++++|
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 93 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFV 93 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 3457999999999999999999999998888 788999988888888999999999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCC-------CCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc-CCCceeEEEeeeCCC
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSL-------NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNS 166 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~ 166 (184)
+|+++.+++.....|+..+...... .++|+++|+||+|+......+++.+.++.... ....+++++|||++|
T Consensus 94 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 173 (199)
T 4bas_A 94 VDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKG 173 (199)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTT
T ss_pred EECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCc
Confidence 9999999999998888887654211 37999999999999888777777777765433 345678999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.||++++++|.+.+.+
T Consensus 174 ~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 174 TGVHEGFSWLQETASR 189 (199)
T ss_dssp BTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 13
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=1.4e-33 Score=194.74 Aligned_cols=162 Identities=27% Similarity=0.517 Sum_probs=139.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|++|+|||||++++.++.+ ..+.+|.+.....+...+..+.+|||||++.+...+..+++.+|++++|+|
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 97 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 97 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 4569999999999999999999998877 566777777777777778999999999999999889999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++.+++.....++..+.......++|+++|+||+|+.+....+++.+.++........++++++||++|.|+++++++|
T Consensus 98 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 98 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 99999999999988888765444689999999999998766677777777655445556789999999999999999999
Q ss_pred HHH
Q 029978 177 VKH 179 (184)
Q Consensus 177 ~~~ 179 (184)
.+.
T Consensus 178 ~~~ 180 (181)
T 2h17_A 178 MSR 180 (181)
T ss_dssp HTC
T ss_pred Hhh
Confidence 864
No 14
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=1.8e-33 Score=196.98 Aligned_cols=164 Identities=33% Similarity=0.617 Sum_probs=129.8
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..+.++|+++|++|||||||++++.++.+. .+.+|.+.....+...++.+.+|||||++.+...+..+++.+|++++|+
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 356789999999999999999999987764 4667777666667777799999999999999888889999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC------------cCCCceeEEEeee
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS------------ITDREVCCYMISC 163 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa 163 (184)
|+++++++.....|+..+.......++|+++|+||+|+......+++.+.++... .....+++++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999988887664446899999999999987666677766655322 1124568999999
Q ss_pred CCCCCHHHHHHHHHHHh
Q 029978 164 KNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~ 180 (184)
++|.|++++++++.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998764
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=194.48 Aligned_cols=167 Identities=28% Similarity=0.605 Sum_probs=139.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC-CCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+.++|+++|++|+|||||++++.+.. +...+.+|.+.....+...+..+.+|||||++.+...+..+++.+|++++|+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVI 98 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 457999999999999999999999877 5677788888777777777789999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCC--CCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSL--NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++.+++.....++..+...... .++|+++|+||+|+.+....+++.+.+.........++++++||++|.|+++++
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 178 (190)
T 2h57_A 99 DSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGV 178 (190)
T ss_dssp ETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHH
Confidence 999988899888888888766444 689999999999998776667777666544333446789999999999999999
Q ss_pred HHHHHHhhhc
Q 029978 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~~~~~ 183 (184)
++|.+.+.+.
T Consensus 179 ~~l~~~i~~~ 188 (190)
T 2h57_A 179 DWLQDQIQTV 188 (190)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=205.69 Aligned_cols=166 Identities=30% Similarity=0.633 Sum_probs=142.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
++.++|+++|++|+|||||++++.++.+... .+|.+.....++...+.+.+|||||++.+...+..+++.+|++++|||
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 4568999999999999999999998776544 368888888888889999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++.+++.....++..+.......++|+++|+||+|+.+....+++...++........++++++||++|.||+++++.|
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999888776655789999999999999887888888888887777778899999999999999999999
Q ss_pred HHHhhhc
Q 029978 177 VKHSKSK 183 (184)
Q Consensus 177 ~~~~~~~ 183 (184)
.+.+.+.
T Consensus 322 ~~~l~~~ 328 (329)
T 3o47_A 322 SNQLRNQ 328 (329)
T ss_dssp HHHHTC-
T ss_pred HHHHHhc
Confidence 9988754
No 17
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=8e-33 Score=194.01 Aligned_cols=167 Identities=18% Similarity=0.237 Sum_probs=127.1
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCC
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAV 88 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (184)
+..+..+.++|+++|.+|+|||||++++.++.+...+.+|.+..... .+...+.+.+|||||++.+...+..+++.+
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 34455678999999999999999999999999888888887754432 335668899999999999988889999999
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
|++++|+|+++++++..+..|+..+.......++|+++|+||+|+.+... .++..+... ...++++++||++|
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~ 171 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE-----SWGATFMESSAREN 171 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECCTTCH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH-----HhCCeEEEEeCCCC
Confidence 99999999999999999999988888776667899999999999975432 122211111 11247999999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q 029978 167 TNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~~ 183 (184)
.|++++++.|.+.+.+.
T Consensus 172 ~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 172 QLTQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999987653
No 18
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=1.8e-32 Score=189.26 Aligned_cols=162 Identities=19% Similarity=0.238 Sum_probs=129.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.++|+++|++|+|||||++++.++.+...+.+|.+..... .+...+.+.+|||||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 3457999999999999999999999988888888887754432 2233467888999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeC-CCCCH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCK-NSTNI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v 169 (184)
+|+|+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++..+.... ..++++++||+ ++.|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK-----YNIPYIETSAKDPPLNV 169 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH-----HTCCEEEEBCSSSCBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHH-----hCCeEEEeccCCCCCCH
Confidence 999999999999888888877665445789999999999997532 22222221111 12469999999 99999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++++.+.+.+.+
T Consensus 170 ~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 170 DKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998765
No 19
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=1e-30 Score=205.84 Aligned_cols=166 Identities=33% Similarity=0.645 Sum_probs=147.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEe
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|.+|+|||||++++.++.+. ...+|.+.....++...+.+.+|||||++.+...+..+++.+|++++|||
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D 398 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 45699999999999999999999988754 45678888888888888999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 97 AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++++++.....++..+.......++|+++|+||+|+.+....+++.+.++........+++++|||++|.||++++++|
T Consensus 399 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 478 (497)
T 3lvq_E 399 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 478 (497)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999988776555789999999999998877778888888877666677889999999999999999999
Q ss_pred HHHhhhc
Q 029978 177 VKHSKSK 183 (184)
Q Consensus 177 ~~~~~~~ 183 (184)
.+.+.+.
T Consensus 479 ~~~~~~~ 485 (497)
T 3lvq_E 479 TSNYKSK 485 (497)
T ss_dssp HHHCC--
T ss_pred HHHHHhc
Confidence 9987653
No 20
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=1.4e-31 Score=185.36 Aligned_cols=159 Identities=18% Similarity=0.275 Sum_probs=123.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEee--CCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+.+||+++|++|||||||++++.++.+...+.+|.+.....+.. ..+.+.+|||+|++.+. +++.+|++++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~ 91 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVF 91 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEE
Confidence 3567999999999999999999999999888887775533333333 34788899999998866 6678999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc----CCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA----LSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
|||+++++++..+..|+..+.......++|+++|+||+|+... ...++..+.... ...+++++|||++|.||
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD----LKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH----TTTCEEEEEBTTTTBTH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH----cCCCeEEEecCCCCCCH
Confidence 9999999999998888888877654468999999999998421 222222222111 01247999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 029978 170 DTVIDWLVKHSKSK 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
+++|+++.+.+.+.
T Consensus 168 ~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 168 ERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 21
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2.4e-32 Score=186.15 Aligned_cols=159 Identities=24% Similarity=0.385 Sum_probs=125.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+.... .. +...+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 3589999999999999999999999888777787775442 22 2344689999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-----CHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-----SKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..+.. ....++++++||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLA-----EEKGLLFFETSAKTGEN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH-----HHHTCEEEECCTTTCTT
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 999999988888888877776543 3679999999999997542 111111111 11134799999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029978 169 IDTVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~~~~ 182 (184)
++++++++.+.+.+
T Consensus 156 i~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 156 VNDVFLGIGEKIPL 169 (170)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987754
No 22
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=2e-32 Score=188.72 Aligned_cols=162 Identities=18% Similarity=0.261 Sum_probs=128.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE-Ee--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+..... .. ...+.+.+|||||++.+...+..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 467999999999999999999999888888888887755432 22 333788999999999998888899999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+.......++|+++|+||+|+.+... .++..+.... ..++++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES-----WNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH-----TTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH-----hCCcEEEEecCCCCCHHH
Confidence 999999999999988888887666667899999999999865422 2222222111 133699999999999999
Q ss_pred HHHHHHHHhhhc
Q 029978 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+++.+.+.+.+.
T Consensus 159 l~~~l~~~~~~~ 170 (181)
T 3t5g_A 159 VFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 23
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=2.9e-32 Score=185.34 Aligned_cols=160 Identities=20% Similarity=0.282 Sum_probs=127.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+..... .+...+.+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999988888887877654432 334467899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++.....|+..+.......+.|+++|+||+|+.+... .++..+.... ....+++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ----WCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----TTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH----ccCCcEEEecCCCCCCHHHH
Confidence 99999988888888877776544446899999999999976432 2222222111 12457999999999999999
Q ss_pred HHHHHHHhh
Q 029978 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
++++.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
No 24
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=8.9e-32 Score=182.91 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=105.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee---eEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.++|+++|++|+|||||++++.+.... ...++.+... ..++...+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 579999999999999999999865543 2233333222 223445578999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 96 DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++.....|+..+.......++|+++|+||+|+.+... .++...... ...++++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----VFDCKFIETSAALHHNVQALF 155 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH-----HTTCEEEECBGGGTBSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH-----HhCCcEEEeccCCCCCHHHHH
Confidence 9999999999999988887766667899999999999975432 222211111 122479999999999999999
Q ss_pred HHHHHHhhhcC
Q 029978 174 DWLVKHSKSKS 184 (184)
Q Consensus 174 ~~i~~~~~~~~ 184 (184)
+.+.+.+.+.+
T Consensus 156 ~~l~~~~~~~r 166 (166)
T 3q72_A 156 EGVVRQIRLRR 166 (166)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999887653
No 25
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=3.4e-32 Score=187.24 Aligned_cols=163 Identities=21% Similarity=0.322 Sum_probs=130.1
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE-EeeC--CEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
+..+.++|+++|++|+|||||++++.++.+...+.+|.+..+.. +... .+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 34567999999999999999999999998888888887755432 2233 46899999999999988889999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++.+++..+..|+..+.......++|+++|+||+|+.+... .++... +. ....++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA-FG----ASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH-HH----HHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-HH----HHcCCeEEEecCCCCCCH
Confidence 99999999989988888888775544446899999999999976432 222222 11 112347999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
++++++|.+.+.+
T Consensus 160 ~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 160 DEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 26
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=4.8e-32 Score=184.20 Aligned_cols=160 Identities=21% Similarity=0.328 Sum_probs=125.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+..... .+...+.+.+|||||++.+...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 56899999999999999999999988877777777654432 223346899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++.....|+..+.......++|+++|+||+|+.+.. ..++..+... ...++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHHH
Confidence 9999999988888888777665544689999999999997542 2233322221 11246999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
++++.+.+.+
T Consensus 158 ~~~l~~~i~~ 167 (168)
T 1u8z_A 158 FFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 27
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=4.4e-31 Score=182.94 Aligned_cols=162 Identities=17% Similarity=0.307 Sum_probs=126.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
++.++|+++|++|+|||||++++.++.+...+.+|....... .+...+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 457899999999999999999999988877777776533322 23344678899999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|+++.+++..+..|+..+.......+.|+++|+||+|+.+.....+....+... ..++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARS----YGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHH----HTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHH----cCCeEEEEeCCCCCCHHHHH
Confidence 99999999998988888888766555789999999999997543222222222111 12369999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+++.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 28
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=3.7e-32 Score=184.61 Aligned_cols=160 Identities=18% Similarity=0.295 Sum_probs=126.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+...+.+|...... .. +.....+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999998888777777653332 22 23346799999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|++++.++..+..++..+.......+.|+++|+||+|+.+... .++..+... ...++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-----HhCCCEEEecCCCCcCHHHH
Confidence 99999888888888888777655556899999999999865422 222211111 01236999999999999999
Q ss_pred HHHHHHHhhh
Q 029978 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
++++.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 29
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=1.7e-31 Score=181.87 Aligned_cols=160 Identities=23% Similarity=0.347 Sum_probs=127.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+.....++.+.... . .+...+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 35689999999999999999999998888777777765442 2 2233578999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++.....|+..+..... .++|+++|+||+|+.+.. ..++..+... ...++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEAQSYAD-----DNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 99999998888888888777765432 689999999999996532 2233322211 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~~~~ 169 (170)
T 1r2q_A 158 EIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHHHhh
Confidence 999999987754
No 30
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.2e-32 Score=189.57 Aligned_cols=165 Identities=21% Similarity=0.230 Sum_probs=126.6
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCC
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAV 88 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (184)
++....+.++|+++|++|+|||||++++.++.+...+.+|.+..... ++...+.+.+|||||++. ...+..+++.+
T Consensus 21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ 99 (196)
T 2atv_A 21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWG 99 (196)
T ss_dssp ------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHC
T ss_pred hccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccC
Confidence 44455678999999999999999999999998888888887754432 233357899999999988 77788889999
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
|++++|+|+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++..+... ...++++++||++|
T Consensus 100 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g 174 (196)
T 2atv_A 100 EGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYECSACTG 174 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEECCTTTC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-----HhCCeEEEECCCcC
Confidence 9999999999998888888887777654444689999999999997642 2222222111 11347999999999
Q ss_pred C-CHHHHHHHHHHHhhh
Q 029978 167 T-NIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~-~v~~l~~~i~~~~~~ 182 (184)
. |++++++++.+.+.+
T Consensus 175 ~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 175 EGNITEIFYELCREVRR 191 (196)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 9 999999999988764
No 31
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=8.5e-32 Score=188.92 Aligned_cols=160 Identities=25% Similarity=0.352 Sum_probs=126.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEee--CCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||++++.++.+...+.+|.+.+.. .+.. ..+.+.+|||||++.+...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 34699999999999999999999999888888888775543 2333 3478999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++.+++..+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ...++++++||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999988888888877665432 35799999999999975322 222222111 112469999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 178 ~l~~~l~~~i~~ 189 (201)
T 2ew1_A 178 KLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 32
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=5.5e-32 Score=184.43 Aligned_cols=161 Identities=17% Similarity=0.182 Sum_probs=112.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccc--eeeE--EeeCCEEEEEEeCCCcccchH-hHHHhccCCCEEEE
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGF--NMRK--VTKGNVTIKLWDLGGQPRFRS-MWERYCRAVSAIVY 93 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~--~~~~--~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~ 93 (184)
.++|+++|++|+|||||++++.+..+.....++... .... .+...+.+.+|||||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 479999999999999999999876655444333332 2222 233357899999999988765 66677888999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++..+... ...++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH-----HcCCcEEEecCccCCCHHH
Confidence 99999999999999998888766555689999999999997432 2222222111 1134799999999999999
Q ss_pred HHHHHHHHhhhcC
Q 029978 172 VIDWLVKHSKSKS 184 (184)
Q Consensus 172 l~~~i~~~~~~~~ 184 (184)
+++.+.+.+...|
T Consensus 157 l~~~l~~~i~~~r 169 (169)
T 3q85_A 157 LFEGAVRQIRLRR 169 (169)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987654
No 33
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=2.6e-30 Score=179.73 Aligned_cols=162 Identities=23% Similarity=0.371 Sum_probs=129.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeC-----------CEEEEEEeCCCcccchHhH
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKG-----------NVTIKLWDLGGQPRFRSMW 81 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~-----------~~~~~~~D~~g~~~~~~~~ 81 (184)
.++.++|+++|++|+|||||++++.++.+...+.+|.+..+. .+... .+.+.+|||||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 455799999999999999999999998888888888876554 22222 4789999999999999999
Q ss_pred HHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEE
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCY 159 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
..+++.+|++++|+|++++.++..+..|+..+.......++|+++|+||+|+.+.. ..++..+.... ..++++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~ 162 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK-----YGIPYF 162 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----HTCCEE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----cCCCEE
Confidence 99999999999999999998888888888777665444689999999999997632 22222221110 123699
Q ss_pred EeeeCCCCCHHHHHHHHHHHhhh
Q 029978 160 MISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
++||+++.|++++++.|.+.+.+
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987753
No 34
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.8e-30 Score=180.78 Aligned_cols=161 Identities=22% Similarity=0.383 Sum_probs=129.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.+..+...+.+|.+.... . ++...+.+.+|||||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 35699999999999999999999999888888888765443 2 2334578999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|++++.++..+..|+..+.......++|+++|+||+|+.+.. ..++..+... ...++++++||+++.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH-----HcCCEEEEecCCCCCCHHH
Confidence 999999988888888888888766555689999999999996532 2222222211 1234699999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+++++.+.+.+
T Consensus 168 l~~~l~~~~~~ 178 (195)
T 1x3s_A 168 AFEELVEKIIQ 178 (195)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 35
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.1e-31 Score=183.58 Aligned_cols=160 Identities=23% Similarity=0.343 Sum_probs=128.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||++++.++.+...+.+|.+..... ++...+.+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 457999999999999999999999998887788887755432 2335678999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++.+++..+..|+..+.... ..++|+++|+||+|+.+.. ..++..+... ...++++++||+++.|++
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAE-----SIGAIVVETSAKNAINIE 174 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----TTTCEEEECBTTTTBSHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCcCHH
Confidence 9999999999988888877765432 3579999999999997532 2333333221 123579999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++.|.+.+.+
T Consensus 175 ~l~~~l~~~i~~ 186 (192)
T 2fg5_A 175 ELFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 36
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=3.2e-31 Score=185.95 Aligned_cols=160 Identities=24% Similarity=0.374 Sum_probs=120.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eEEeeC--CEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||++++.++.+...+.+|.+... ..+... .+.+.+|||||++++...+..+++.+|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 4459999999999999999999999988888888876443 333333 378999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCce-eEEEeeeCCCCCH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREV-CCYMISCKNSTNI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 169 (184)
+|+|+++++++..+..|+..+.... ..++|+++|+||+|+.+.. ..++..+.... ..+ +++++||++|.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH-----YDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHH-----cCCCEEEEEeCCCCCCH
Confidence 9999999888888888877776543 3679999999999997632 22333222211 123 6999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
++++++|.+.+.+
T Consensus 181 ~~l~~~l~~~i~~ 193 (201)
T 2hup_A 181 EEAFLRVATELIM 193 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 37
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=2.4e-31 Score=181.29 Aligned_cols=160 Identities=21% Similarity=0.339 Sum_probs=126.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+...+.++.+.... ... .....+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45699999999999999999999999888887888775443 222 33478999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++.....|+..+... .....|+++|+||+|+.+... .++...... ...++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCcCHH
Confidence 999999988888887777666543 336899999999999976422 222222111 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++.|.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999987754
No 38
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=1.7e-30 Score=178.36 Aligned_cols=163 Identities=23% Similarity=0.373 Sum_probs=125.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeC--CEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+.....+|.+.... .+... .+.+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 45689999999999999999999998888888888775543 23333 378999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcC---CCCCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSK---PSLNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|+++..++..+..|+..+... ....++|+++|+||+|+.+.. ..++..+.... ....+++++||++|.|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----NGDYPYFETSAKDATN 160 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----TTCCCEEECCTTTCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh----cCCceEEEEeCCCCCC
Confidence 999999988888887777665432 223678999999999997432 23333332221 1234699999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029978 169 IDTVIDWLVKHSKSK 183 (184)
Q Consensus 169 v~~l~~~i~~~~~~~ 183 (184)
++++++.+.+.+.+.
T Consensus 161 i~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 161 VAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987653
No 39
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.97 E-value=3.4e-31 Score=182.43 Aligned_cols=160 Identities=23% Similarity=0.330 Sum_probs=126.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...++|+++|++|+|||||++++.++.+.....+|.+.... .+ +...+.+.+|||||++.+...+..+++.+|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 45699999999999999999999998888777777764443 22 233578999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++..++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..+... ...++++++||++|.|++
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 90 IVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQ-----ENGLFFMETSAKTATNVK 163 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCSSSCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHH
Confidence 9999999888888888877776543 2589999999999996542 2233322221 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
+++++|.+.+.+
T Consensus 164 ~l~~~l~~~~~~ 175 (181)
T 2efe_B 164 EIFYEIARRLPR 175 (181)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 40
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=3.3e-31 Score=182.00 Aligned_cols=161 Identities=19% Similarity=0.278 Sum_probs=126.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
..+.++|+++|++|+|||||++++.++.+...+.+|.+.... .+. ...+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 345799999999999999999999998888777777764432 222 3347899999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++..++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..+.... ..++++++||++|.|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-----NGLLFLEASAKTGENV 165 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHH-----cCCEEEEEeCCCCCCH
Confidence 99999999888888887777665432 2579999999999996532 22233222211 2347999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++++++.+.+.+
T Consensus 166 ~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 166 EDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
No 41
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=1.5e-31 Score=186.40 Aligned_cols=158 Identities=16% Similarity=0.268 Sum_probs=124.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+..+.. .+...+.+.+|||||++.+...+..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 456999999999999999999999999888888888755543 22345678999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCccCc----CCHhHH---HHHcCCCCcCCCceeEEEeeeCC
Q 029978 94 VVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEA----LSKEDL---MEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 94 v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
|+|+++++++..+.. |...+... ..++|+++|+||+|+.+. ...++. .+..+. ..++++||++
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~ 171 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC-------VAYIEASSVA 171 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC-------SCEEECBTTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC-------CEEEEeecCC
Confidence 999999998888744 44444322 257999999999999753 222222 222221 1399999999
Q ss_pred CCCHHHHHHHHHHHhhhc
Q 029978 166 STNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~~~ 183 (184)
|.|++++++.+.+.+.+.
T Consensus 172 ~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp TBSHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999987654
No 42
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=3.3e-31 Score=186.07 Aligned_cols=163 Identities=21% Similarity=0.307 Sum_probs=130.2
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
...+.++|+++|++|||||||++++.++.+...+.+|.+.... .+. ...+.+.+|||||++.+...+..+++.+|++
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 3456799999999999999999999998888777777765442 222 2346899999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++.+++..+..|+..+.......++|+++|+||+|+.+.. ..++..+... ...++++++||++|.|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRANV 164 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-----HhCCeEEEEeCCCCCCH
Confidence 9999999999998988888887766555689999999999997642 2233322221 11246999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
++++++|.+.+.+
T Consensus 165 ~~l~~~l~~~i~~ 177 (206)
T 2bov_A 165 DKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 43
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=1.2e-31 Score=187.29 Aligned_cols=163 Identities=18% Similarity=0.194 Sum_probs=119.9
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccce--eeE--EeeCCEEEEEEeCCCcccchH-hHHHhccCCCE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFN--MRK--VTKGNVTIKLWDLGGQPRFRS-MWERYCRAVSA 90 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~--~~~--~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~ 90 (184)
....++|+++|++|||||||++++.+........++.... ... ++...+.+.+|||+|++.+.. .+..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 3456999999999999999999997543332222333322 222 333457899999999987764 67778899999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|||++++++|..+..|+..+.......++|+++|+||+|+.+.. ..++..+.... ..++++++||++|.|
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~-----~~~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-----LSCKHIETSAALHHN 174 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH-----TTCEEEEEBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHH-----hCCEEEEEcCCCCCC
Confidence 99999999999999998888887654444579999999999997542 22232221111 124699999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029978 169 IDTVIDWLVKHSKSK 183 (184)
Q Consensus 169 v~~l~~~i~~~~~~~ 183 (184)
++++|+.+.+.+.+.
T Consensus 175 v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 175 TRELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
No 44
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=1.5e-31 Score=185.70 Aligned_cols=161 Identities=27% Similarity=0.442 Sum_probs=124.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeC--CEEEEEEeCCCcccch-HhHHHhccCCCEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFR-SMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~ 91 (184)
.+.++|+++|++|+|||||++++.++.+.....+|.+.... .+... .+.+.+|||||++.+. ..+..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 45699999999999999999999998888777777764443 23333 4789999999999988 7888999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCC---
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNS--- 166 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--- 166 (184)
++|+|+++..++..+..|+..+.......++|+++|+||+|+.+... .++..+... ...++++++||+++
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~~ 172 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMPLFETSAKNPNDN 172 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEECCSSSGGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH-----HcCCEEEEEeCCcCCcc
Confidence 99999999988888888888877665557899999999999975422 222221111 11236999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.|++++++.|.+.+.+
T Consensus 173 ~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 173 DHVEAIFMTLAHKLKS 188 (189)
T ss_dssp SCHHHHHHHHC-----
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999887654
No 45
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.97 E-value=8.2e-31 Score=182.72 Aligned_cols=157 Identities=24% Similarity=0.417 Sum_probs=127.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeCC--EEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|+|||||++++.++.+...+.++.+.... .+...+ +.+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 34689999999999999999999999888887777764443 333333 78999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH--h---HHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|+++.+++..+..|+..+.... ..++|+++|+||+|+.+.... + +..+.. .++++++||++|.
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~g~ 164 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNAT 164 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT--------TCCEEEECTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHHc--------CCcEEEEeCCCCC
Confidence 9999999988888888777665443 258999999999999765321 2 222222 2369999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
|++++++++.+.+.+
T Consensus 165 gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 165 NVEQSFMTMAAEIKK 179 (196)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
No 46
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=2.2e-31 Score=182.31 Aligned_cols=160 Identities=19% Similarity=0.150 Sum_probs=112.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eE--EeeCCEEEEEEeCCCccc--chHhHHHhccCCCE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RK--VTKGNVTIKLWDLGGQPR--FRSMWERYCRAVSA 90 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~--~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~~~ 90 (184)
++.++|+++|++|+|||||++++.+..+..... +.+... .. ++...+.+.+|||||++. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 457899999999999999999999877654332 333222 22 333346899999999987 56677788899999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|+++++++..+..|+..+.......++|+++|+||+|+.+... .++...... ...++++++||++|.|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~g 155 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-----VFDCKFIETSATLQHN 155 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HHTSEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-----HcCCeEEEEecCCCCC
Confidence 999999999999998888887776654456899999999999976422 222211110 1124799999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029978 169 IDTVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~~~~ 182 (184)
+++++++|.+.+.+
T Consensus 156 i~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 156 VAELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 47
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=1.2e-31 Score=182.83 Aligned_cols=160 Identities=26% Similarity=0.336 Sum_probs=120.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||++++.++.+.....+|.+.... .+ +...+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999998888777788775543 22 334578999999999999888889999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++.+++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+... ...++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHH
Confidence 9999999888888887776654322 2478999999999997642 2223222211 112479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 48
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=5.9e-31 Score=184.98 Aligned_cols=175 Identities=19% Similarity=0.257 Sum_probs=121.6
Q ss_pred HHHHHHHHHhhcc-CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchH
Q 029978 4 WEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
...+..++++... .+.++|+++|++|+|||||++++.++.+...+.+|...... ..+...+.+.+|||||++.+..
T Consensus 14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 93 (204)
T 4gzl_A 14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR 93 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTT
T ss_pred cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHH
Confidence 4556667766444 56799999999999999999999998888777777754332 2344557888999999999999
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcC------
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT------ 152 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~------ 152 (184)
.+..+++.+|++++|+|++++.++.... .|+..+.... .++|+++|+||+|+.+.....+...........
T Consensus 94 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 4gzl_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHH
Confidence 9999999999999999999999988887 4444444332 579999999999997653222222221111100
Q ss_pred ----CCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 153 ----DREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 153 ----~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
....+++++||++|.|++++++++.+.+
T Consensus 172 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1123699999999999999999998764
No 49
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=2e-31 Score=184.26 Aligned_cols=161 Identities=22% Similarity=0.323 Sum_probs=129.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE-Ee--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|....... +. ...+.+.+|||||++.+...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 457999999999999999999999988887777777654432 22 333689999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++.+++.....|+..+.......++|+++|+||+|+.+.. ..++..+... ...++++++||+++.|+++
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHH
Confidence 99999998888888888777665554689999999999997642 2233333221 1234799999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
++++|.+.+.+
T Consensus 171 l~~~l~~~i~~ 181 (187)
T 2a9k_A 171 VFFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 50
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.6e-31 Score=182.87 Aligned_cols=162 Identities=25% Similarity=0.430 Sum_probs=118.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCC-CCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYS-EDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~-~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
.++.++|+++|++|+|||||++++.++.+. ..+.+|.+..+.. .+...+.+.+|||||++.+...+..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 356799999999999999999999988875 4566776655432 22334689999999999999889999999999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|++++.++..+..|+..+..... .++|+++|+||+|+.+... .++..+... ...++++++||+++.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEeCCCCCC
Confidence 9999999998888888877776655432 6799999999999976432 222222111 0123699999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029978 169 IDTVIDWLVKHSKSK 183 (184)
Q Consensus 169 v~~l~~~i~~~~~~~ 183 (184)
++++++++.+.+.+.
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887653
No 51
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=8e-31 Score=182.57 Aligned_cols=160 Identities=23% Similarity=0.355 Sum_probs=127.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||++++.+..+.....+|.+..... +....+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 345999999999999999999999988887777777654432 2234578999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++...... ...++++++||++|.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAE-----NNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999888888888877776543 3689999999999997642 2222222211 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++.|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (193)
T 2oil_A 177 LAFETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 52
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.6e-31 Score=182.35 Aligned_cols=161 Identities=20% Similarity=0.313 Sum_probs=123.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+..+.. .+...+.+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999988877777777654432 223346899999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCccCcCCH--hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKP-SLNGIPLLVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+++++++.....++..+.... ...+.|+++|+||+|+.+.... .+... +. ....++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-LA----RTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-HH----HHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHH-HH----HHhCCeEEEecCCCCcCHHH
Confidence 99999888877777766654421 2257899999999999754321 12111 11 01134799999999999999
Q ss_pred HHHHHHHHhhhc
Q 029978 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+++++.+.+.+.
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987653
No 53
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=9.4e-31 Score=181.01 Aligned_cols=160 Identities=20% Similarity=0.297 Sum_probs=126.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeCC--EEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|||||||++++.++.+.....+|.+.... .+.... +.+.+|||||++.+...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45699999999999999999999998888877777764432 233333 78999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ...++++++||++|.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQ-----ENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEecCCCCCCHH
Confidence 9999999888888887776665432 26799999999999965322 222222211 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++.+.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 54
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.6e-31 Score=187.13 Aligned_cols=166 Identities=20% Similarity=0.354 Sum_probs=115.4
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--E--EeeCCEEEEEEeCCCcccchHhHHHhccC
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRA 87 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 87 (184)
.+...++.++|+++|++|+|||||++++.++.+...+.+|.+.... . ++...+.+.+|||||++.+...+..+++.
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 3445566799999999999999999999998887777777664432 2 33344789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--------CCHhHHHHHcCCCCcCCCceeEE
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--------LSKEDLMEQMGLKSITDREVCCY 159 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
+|++++|+|+++..++..+..|+..+... ...++|+++|+||+|+.+. ...++..+ +. ....++++
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~-~~----~~~~~~~~ 174 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK-LA----MTYGALFC 174 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH-HH----HHHTCEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHH-HH----HHcCCeEE
Confidence 99999999999988888888776665433 2257899999999999631 11111111 11 01134799
Q ss_pred EeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 160 MISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
++||++|.|++++++++.+.+.++
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHTC-
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999988653
No 55
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=2.3e-30 Score=183.29 Aligned_cols=160 Identities=20% Similarity=0.255 Sum_probs=125.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
....++|+++|++|||||||++++.++.+...+.+|.+..+. .++...+.+.+|||+|++.+...+..+++.+|+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 345799999999999999999999999998888888876554 23455689999999999999999999999999999
Q ss_pred EEEeCCCCCChHH-HHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--------------CCHhHHHHHcCCCCcCCCce-
Q 029978 93 YVVDAADYDNLPV-SRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--------------LSKEDLMEQMGLKSITDREV- 156 (184)
Q Consensus 93 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~- 156 (184)
+|||+++++++.. ...|+..+.... .+.|+++|+||+|+.+. ...++..+... ...+
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~ 176 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK-----QLGAE 176 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH-----HHTCS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH-----HcCCC
Confidence 9999999999988 456666665432 58999999999999753 12222211111 1123
Q ss_pred eEEEeeeCCCCC-HHHHHHHHHHHhhh
Q 029978 157 CCYMISCKNSTN-IDTVIDWLVKHSKS 182 (184)
Q Consensus 157 ~~~~~Sa~~~~~-v~~l~~~i~~~~~~ 182 (184)
++++|||++|.| |+++|+.+.+.+.+
T Consensus 177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 177 IYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 699999999998 99999999988764
No 56
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.97 E-value=1.1e-30 Score=177.96 Aligned_cols=160 Identities=24% Similarity=0.371 Sum_probs=119.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..++|+++|++|+|||||++++.++.+...+.+|.+.... .+. ...+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 4689999999999999999999998887777777764443 233 335789999999999998888899999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ...++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHH
Confidence 999999888888877777665543 25789999999999954322 222221111 01236999999999999999
Q ss_pred HHHHHHHhhhc
Q 029978 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
++.+.+.+.++
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 57
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=1.7e-31 Score=183.39 Aligned_cols=160 Identities=22% Similarity=0.366 Sum_probs=125.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEee--CCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+.... .+.. ..+.+.+|||||++.+...+..+++.+|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4599999999999999999999998888887777775443 2333 33689999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|++++.++.....|+..+.... ..++|+++|+||+|+.+... .++...... ...++++++||++|.|+++
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-----ELNVMFIETSAKAGYNVKQ 166 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEEEBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Confidence 999999888888888877765432 25799999999999975432 222222211 1134799999999999999
Q ss_pred HHHHHHHHhhhc
Q 029978 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+++.|.+.+.+.
T Consensus 167 l~~~l~~~~~~~ 178 (179)
T 2y8e_A 167 LFRRVAAALPGM 178 (179)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHhhc
Confidence 999999987654
No 58
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-31 Score=186.85 Aligned_cols=157 Identities=22% Similarity=0.392 Sum_probs=126.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..+||+++|++|+|||||++++.++.+.....+|.+.... ..+...+.+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 34599999999999999999999998887777776664333 23446789999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhH---HHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KED---LMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+... .++ ..+.. .++++++||++|.
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL--------GFDFFEASAKENI 171 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHc--------CCeEEEEECCCCC
Confidence 999999999998888877776553 236899999999999965422 222 22222 2369999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
|++++++.+.+.+.+
T Consensus 172 gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 172 SVRQAFERLVDAICD 186 (191)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
No 59
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=2.4e-31 Score=185.06 Aligned_cols=160 Identities=19% Similarity=0.272 Sum_probs=121.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEee--CCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+.....+|.+.... .+.. ..+.+.+|||||++.+...+..+++.+|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 34699999999999999999999998887777776664432 3333 3478999999999999888899999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++.+++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+... ...++++++||++|.|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999888888888877775432 2579999999999997532 2222222111 112479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
+++++|.+.+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (191)
T 2a5j_A 173 EAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 60
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=2.5e-31 Score=180.86 Aligned_cols=159 Identities=22% Similarity=0.394 Sum_probs=125.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--Ee--eCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+..... +. ...+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 457899999999999999999999998888888887654432 22 23578999999999998888889999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++.....|+..+.... .+.|+++|+||+|+.+.. ..++..+... ...++++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Confidence 9999999888888877777665433 578999999999997532 2222222111 112479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T 1z2a_A 156 EVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 61
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=4.3e-31 Score=181.70 Aligned_cols=160 Identities=24% Similarity=0.452 Sum_probs=124.5
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeCC--EEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
.++.++|+++|++|+|||||++++.++.+...+.++.+.... .+...+ +.+.+|||||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 356799999999999999999999988888777777764443 344444 7899999999999998889999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+... .++...... ...++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAG-----QMGIQLFETSAKENVNV 158 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHH-----HcCCeEEEEECCCCCCH
Confidence 99999999999988888877775532 4799999999999876432 122221111 11236999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++++++.+.+.+
T Consensus 159 ~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 159 EEMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 62
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=2.5e-31 Score=184.61 Aligned_cols=157 Identities=22% Similarity=0.414 Sum_probs=125.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+.... .+ +...+.+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 44699999999999999999999999888777777765443 22 233578999999999999888899999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--Hh---HHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|+++.+++..+..|+..+.... ..+.|+++|+||+|+.+... .+ ++.+.. .++++++||++|.
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~g~ 170 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDL--------GFEFFEASAKENI 170 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECBTTTTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHc--------CCeEEEEECCCCC
Confidence 9999999888888888777665432 35799999999999976422 22 222222 2369999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
|+++++++|.+.+.+
T Consensus 171 gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 171 NVKQVFERLVDVICE 185 (189)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
No 63
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=3.6e-31 Score=187.58 Aligned_cols=161 Identities=20% Similarity=0.362 Sum_probs=126.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeC----------CEEEEEEeCCCcccchHhHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKG----------NVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~----------~~~~~~~D~~g~~~~~~~~~ 82 (184)
++.++|+++|++|+|||||++++.++.+...+.+|.+..+.. ++.. .+.+.+|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 456999999999999999999999888877777776644322 2222 57899999999999999999
Q ss_pred HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEE
Q 029978 83 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
.+++.+|++++|+|+++..++..+..|+..+.......++|+++|+||+|+.+... .++..+.... ..+++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK-----YGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH-----CCCcEEE
Confidence 99999999999999999888888887777766554446899999999999976422 2222221111 1246999
Q ss_pred eeeCCCCCHHHHHHHHHHHhhh
Q 029978 161 ISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+||+++.|+++++++|.+.+.+
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 64
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=7.3e-31 Score=184.12 Aligned_cols=157 Identities=19% Similarity=0.392 Sum_probs=126.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+.... .+. ...+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 45699999999999999999999998888777777764443 222 33578999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--Hh---HHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... .+ ++.+.. .++++++||++|.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~ 156 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHL--------GFEFFEASAKDNI 156 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH--------TCEEEECBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHHC--------CCeEEEEECCCCC
Confidence 9999999888888888777765432 35789999999999976422 22 222222 2369999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 029978 168 NIDTVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~ 182 (184)
|+++++++|.+.+.+
T Consensus 157 gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 157 NVKQTFERLVDVICE 171 (203)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987653
No 65
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=4.5e-30 Score=178.98 Aligned_cols=158 Identities=19% Similarity=0.236 Sum_probs=122.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCC-----------CCCccceee-----EEeeCCEEEEEEeCCCcccchHh
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDM-----------IPTVGFNMR-----KVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~-----------~~t~~~~~~-----~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
...++|+++|++|||||||++.+. +.+...+ .+|.+..+. ..+...+.+.+|||||++.+...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 456999999999999999997665 4444442 334443332 22344578999999999999999
Q ss_pred HHHhccCCCEEEEEEeCC------CCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCC
Q 029978 81 WERYCRAVSAIVYVVDAA------DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 154 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
+..+++.+|++++|+|++ +.+++..+..|+..+. ....++|+++|+||+|+.+....++..+.....
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~----- 163 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE----- 163 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTT-----
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHhc-----
Confidence 999999999999999999 4456666666666652 234689999999999998876666666655432
Q ss_pred ce-eEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 155 EV-CCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~-~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
.+ +++++||++|.|++++++++.+.+.+
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 23 69999999999999999999988764
No 66
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=1.3e-30 Score=179.18 Aligned_cols=157 Identities=17% Similarity=0.251 Sum_probs=116.8
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.++|+++|++|||||||++++.++.+.. +.+|.+..+.. ++...+.+.+|||||++. ..+++.+|+++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 3567999999999999999999999988876 66776644322 223347899999999987 45678899999
Q ss_pred EEEeCCCCCChHHHHHHHHHHh--cCCCCCCCcEEEEeeCCCccC--c--CCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLL--SKPSLNGIPLLVLGNKIDKPE--A--LSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~piilv~nK~D~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+|||+++++++..+..|+..+. ......++|+++|+||+|+.. . ...++..+.... ...++++++||++|
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~ 153 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD----MKRCSYYETXATYG 153 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH----HSSEEEEEEBTTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh----hcCCeEEEEecccc
Confidence 9999999999998887643332 222236799999999999842 1 122332221110 11357999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.|++++|+.+.+.+.+
T Consensus 154 ~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 154 LNVDRVFQEVAQKVVT 169 (178)
T ss_dssp BTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987654
No 67
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=5e-31 Score=183.64 Aligned_cols=161 Identities=22% Similarity=0.332 Sum_probs=119.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEee--CCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...++|+++|++|+|||||++++.++.+.....+|.+.... .+.. ..+.+.+|||||++.+...+..+++.+|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988887777777764433 2333 3478999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++..++..+..|+..+... ...++|+++|+||+|+.+... .++..+.... ....+++++||++|.|++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~----~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQ----ITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT----STTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHh----cCCCeEEEEeCCCCCCHH
Confidence 999999988888887776655433 335799999999999975422 2222222111 124579999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
+++++|.+.+.+
T Consensus 179 ~l~~~l~~~i~~ 190 (192)
T 2il1_A 179 EIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 68
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=1.4e-31 Score=185.80 Aligned_cols=160 Identities=22% Similarity=0.290 Sum_probs=121.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|||||||++++.++.+...+.+|.+..+.. ++...+.+.+|||||++.+... ..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il 97 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV 97 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence 456999999999999999999999998888888888755422 2334578999999999987764 568899999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeee-CCCCC
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPS--LNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISC-KNSTN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~ 168 (184)
|||+++++++..+..|+..+..... ..++|+++|+||+|+.+.. ..++..+... ...+++++||| ++|.|
T Consensus 98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-----RFGCLFFEVSACLDFEH 172 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECCSSSCSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH-----HcCCcEEEEeecCcccc
Confidence 9999999999998888777754321 1478999999999996532 2222222111 11246999999 89999
Q ss_pred HHHHHHHHHHHhhh
Q 029978 169 IDTVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~~~~ 182 (184)
|+++++.+.+.+.+
T Consensus 173 v~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 173 VQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988764
No 69
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.97 E-value=2.8e-31 Score=182.40 Aligned_cols=162 Identities=20% Similarity=0.354 Sum_probs=123.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eEEeeC---CEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RKVTKG---NVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+... ..+... .+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4679999999999999999999998888766667776433 334433 38999999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCc-EEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPS-LNGIP-LLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p-iilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++|+|+++++++..+..|+..+..... ..+.| +++|+||+|+.+.. ..++..+... ...++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-----ENGFSSHFVSAKTGD 158 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-----HcCCcEEEEeCCCCC
Confidence 999999998888888777666644210 01345 89999999997532 2222222111 112469999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 029978 168 NIDTVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~~ 183 (184)
|+++++++|.+.+.+.
T Consensus 159 gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGI 174 (178)
T ss_dssp THHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999887654
No 70
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=1.2e-31 Score=185.21 Aligned_cols=160 Identities=23% Similarity=0.376 Sum_probs=97.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeC--CEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+.... .+... .+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 45699999999999999999999988877777777764443 33333 388999999999999888888999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..++|+++|+||+|+.+.. ..++..+... ...++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLAL-----DYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHH-----HHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 9999999988888888777765432 2579999999999997642 2222222111 112479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++.+.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
No 71
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=7.3e-31 Score=184.57 Aligned_cols=160 Identities=24% Similarity=0.378 Sum_probs=127.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEee--CCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+.... .+.. ..+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45699999999999999999999999888887777765443 2333 3468999999999999888899999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+... ...++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 9999999988888888777765433 3579999999999997642 2222222111 122469999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=7.4e-30 Score=172.91 Aligned_cols=160 Identities=16% Similarity=0.273 Sum_probs=125.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-E--EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+.....+|...... . .+...+.+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 3579999999999999999999988887777777654332 2 223347789999999999998999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+|+++.+++.....|+..+.......+.|+++|+||+|+.+... .++..+.... ..++++++||++|.|+++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARS-----YGIPYIETSAKTRQGVEDAF 156 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-----HTCCEEEECTTTCTTHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHH-----cCCeEEEecCCCCCCHHHHH
Confidence 99999888888887777766544445799999999999876322 2222221110 12369999999999999999
Q ss_pred HHHHHHhhh
Q 029978 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+++.+.+.+
T Consensus 157 ~~l~~~~~~ 165 (166)
T 2ce2_X 157 YTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988765
No 73
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.8e-30 Score=180.25 Aligned_cols=167 Identities=17% Similarity=0.224 Sum_probs=119.4
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE-Ee--eCCEEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
++....++|+++|++|||||||++++.++.+...+.+|.+..... +. ...+.+.+|||||++.+...+..+++.+|+
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (207)
T 2fv8_A 20 FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (207)
T ss_dssp GGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred cccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence 334567899999999999999999999988887777777654422 22 334789999999999998888899999999
Q ss_pred EEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcC---------CCc-eeEE
Q 029978 91 IVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT---------DRE-VCCY 159 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~ 159 (184)
+++|+|+++++++.... .|...+... ..++|+++|+||+|+.+.....+........... ... .+++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYL 177 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEE
Confidence 99999999988888874 444444332 1479999999999997652222222221111000 012 2799
Q ss_pred EeeeCCCCCHHHHHHHHHHHhhh
Q 029978 160 MISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
++||++|.|+++++++|.+.+.+
T Consensus 178 ~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 178 ECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHS
T ss_pred EeeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 74
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=2.1e-30 Score=178.61 Aligned_cols=159 Identities=19% Similarity=0.299 Sum_probs=110.9
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
...+.++|+++|++|+|||||++++.++.+...+.+|.+.... ..+...+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 3466799999999999999999999998887777777653332 2344567888999999999998889999999999
Q ss_pred EEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCC------------Hh---HHHHHcCCCCcCCCc
Q 029978 92 VYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALS------------KE---DLMEQMGLKSITDRE 155 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~------------~~---~~~~~~~~~~~~~~~ 155 (184)
++|+|+++++++..+. .|...+.... .+.|+++|+||+|+.+... .+ +..+..+ .
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 154 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG-------A 154 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT-------C
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC-------C
Confidence 9999999998888887 4555554332 3799999999999865421 11 1111211 1
Q ss_pred eeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 156 VCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
.++++|||++|.|++++++.+.+.+.+
T Consensus 155 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 155 PAYIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 369999999999999999999987754
No 75
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=3e-30 Score=177.61 Aligned_cols=163 Identities=27% Similarity=0.419 Sum_probs=114.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe---eCCEEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
.++.++|+++|++|+|||||++++.++.+...+.+|.+.... .+. .....+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 356799999999999999999999998888777777764443 232 235789999999999999888999999999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcC---CCCCCCcEEEEeeCCCccCcC---CHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSK---PSLNGIPLLVLGNKIDKPEAL---SKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~piilv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+++|+|+++..++..+..|+..+... ....++|+++|+||+|+.+.. ..++..+.... ....+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS----LGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH----TTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh----cCCCeEEEEecC
Confidence 99999999998888888777666433 233678999999999995432 22222222110 123469999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 029978 165 NSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~~ 182 (184)
+|.|++++++++.+.+.+
T Consensus 161 ~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQ 178 (182)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 76
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=3.4e-29 Score=175.35 Aligned_cols=158 Identities=22% Similarity=0.359 Sum_probs=125.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--EeeCC-------------------------------
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--VTKGN------------------------------- 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~~~~~------------------------------- 63 (184)
++.++|+++|++|+|||||++++++..+...+.+|.+..... +....
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 567999999999999999999999998888888887754432 22221
Q ss_pred --------EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 64 --------VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 64 --------~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
..+.+|||||++.+...+..+++.+|++++|+|++++.++.....|+..+.... +.|+++|+||+|...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCccc
Confidence 789999999999999999999999999999999999888888888877776542 399999999999432
Q ss_pred -cCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 136 -ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 136 -~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
....++..+.... ..++++++||++|.|+++++++|.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 162 FQVDILEVQKYAQD-----NNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CCSCHHHHHHHHHH-----TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 2223333332221 23479999999999999999999987754
No 77
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=7.2e-31 Score=186.14 Aligned_cols=161 Identities=24% Similarity=0.325 Sum_probs=125.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEe--e--CC-EEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT--K--GN-VTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~--~--~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
...++|+++|++|||||||++++.++.+...+.+|.+....... . .. +.+.+|||||++.+...+..+++.+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 45799999999999999999999988888777777775544322 1 22 7899999999999988888999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++..++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+... ...++++++||++|.|+
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLK-----GKNYEYFEISAKTAHNF 162 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTT-----TCCCEEEEEBTTTTBTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCcEEEEecCCCCCH
Confidence 99999999988888887776665432 2468999999999997642 2222222221 23457999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 029978 170 DTVIDWLVKHSKSK 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
+++++.+.+.+.+.
T Consensus 163 ~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 163 GLPFLHLARIFTGR 176 (218)
T ss_dssp THHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987653
No 78
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=5e-30 Score=177.21 Aligned_cols=164 Identities=18% Similarity=0.247 Sum_probs=123.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|...... .++...+.+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 45789999999999999999999998888777777764432 233345778899999999998888899999999999
Q ss_pred EEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC---------cCCCc-eeEEEee
Q 029978 94 VVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS---------ITDRE-VCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~S 162 (184)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+......... ..... .+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999988888887 4555554322 3799999999999975421111111111000 00112 3799999
Q ss_pred eCCCCCHHHHHHHHHHHhhh
Q 029978 163 CKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~ 182 (184)
|++|.|++++++.+.+.+.+
T Consensus 161 a~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSC
T ss_pred CCCccCHHHHHHHHHHHHhc
Confidence 99999999999999988764
No 79
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.96 E-value=5e-30 Score=180.26 Aligned_cols=162 Identities=23% Similarity=0.371 Sum_probs=126.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE--E--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK--V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||++++.+..+...+.+|.+..... + +...+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 567999999999999999999999998888888887654433 2 234478999999999999888888999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCC---CCCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKP---SLNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|++++.++..+..|+..+.... ...+.|+++|+||+|+.+.. ..++..+.... ...++++++||++|.|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~g 161 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS----KNNIPYFETSAKEAIN 161 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH----TTSCCEEECBTTTTBS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh----cCCceEEEEeCCCCCC
Confidence 9999999888888877776664432 12478999999999997432 22222222110 1234699999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029978 169 IDTVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~~~~ 182 (184)
+++++++|.+.+.+
T Consensus 162 i~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 162 VEQAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987753
No 80
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.96 E-value=1e-30 Score=183.25 Aligned_cols=160 Identities=22% Similarity=0.314 Sum_probs=116.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eEEeeC--CEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|||||||++++.++.+...+.+|.+... ..+... .+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 4569999999999999999999998888777777766443 233333 378999999999988888889999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++.+++..+..|+..+..... .++|+++|+||+|+.+... .++..+... ...++++++||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQ-----ENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 99999999888888888777654332 6799999999999965322 223222211 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 81
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.96 E-value=1.1e-29 Score=178.09 Aligned_cols=164 Identities=18% Similarity=0.260 Sum_probs=122.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...++|+++|++|+|||||++++.++.+...+.+|.+.... .+. ...+.+.+|||||++.+...+..+++.+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 45689999999999999999999999888877777765442 222 334689999999999999888999999999999
Q ss_pred EEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc---------CCCc-eeEEEee
Q 029978 94 VVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI---------TDRE-VCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~S 162 (184)
|+|+++++++.... .|...+... . .+.|+++|+||+|+.+.....+.......... .... .+++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHF-C-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-S-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999988888884 444444332 1 47999999999999764221111111100000 0012 2699999
Q ss_pred eCCCCCHHHHHHHHHHHhhh
Q 029978 163 CKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~ 182 (184)
|++|.|++++++.|.+.+.+
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999987654
No 82
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=1.5e-30 Score=183.79 Aligned_cols=158 Identities=20% Similarity=0.285 Sum_probs=123.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.++|+++|++|+|||||++++.++.+...+.+|.+..+.. ++...+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 3467999999999999999999999998888888887754432 3344579999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcC----------CHhHH---HHHcCCCCcCCCceeE
Q 029978 93 YVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEAL----------SKEDL---MEQMGLKSITDREVCC 158 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~----------~~~~~---~~~~~~~~~~~~~~~~ 158 (184)
+|+|+++++++..+. .|+..+.... .+.|+++|+||+|+.+.. ..++. .+.++ ..++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~ 156 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG-------AAAY 156 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT-------CSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC-------CceE
Confidence 999999998888886 5555554332 479999999999996541 11221 12221 1369
Q ss_pred EEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 159 YMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 159 ~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+++||++|.|++++++.+.+.+.+
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 157 IECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEccCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999988764
No 83
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.96 E-value=1.2e-29 Score=176.12 Aligned_cols=162 Identities=17% Similarity=0.282 Sum_probs=115.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|.+|||||||++++.++.+.....+|...... .+. ...+.+.+|||||++.+...+..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 35689999999999999999999988877776666654332 222 334679999999999998889999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+|+++..++..+..|+..+.......++|+++|+||+|+.+.. ..++..+.... ..++++++||+++.|++++
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS-----YGIPFIETSAKTRQGVEDA 173 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-----HTCCEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH-----cCCeEEEEeCCCCCCHHHH
Confidence 99999988888887777766554334579999999999987532 22222222110 1236999999999999999
Q ss_pred HHHHHHHhhhc
Q 029978 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
+++|.+.+.+.
T Consensus 174 ~~~l~~~~~~~ 184 (190)
T 3con_A 174 FYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 84
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.96 E-value=6.8e-30 Score=180.81 Aligned_cols=165 Identities=21% Similarity=0.298 Sum_probs=104.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|...... .++...+.+.+|||||++.+...+..+++.+|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 45699999999999999999999988887777777764432 223344689999999999999999999999999999
Q ss_pred EEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCC---------cCCCc-eeEEEee
Q 029978 94 VVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS---------ITDRE-VCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~S 162 (184)
|+|+++++++..+. .|+..+.... .++|+++|+||+|+.+.....+..+...... ..... .++++||
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 99999998888886 4555554322 5789999999999976522211111111000 00112 3799999
Q ss_pred eCCCCCHHHHHHHHHHHhhhc
Q 029978 163 CKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~~ 183 (184)
|++|.|++++++.|.+.+.+.
T Consensus 190 A~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999887653
No 85
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=7.4e-29 Score=175.30 Aligned_cols=163 Identities=24% Similarity=0.320 Sum_probs=116.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeC---CEEEEEEeCCCcccchH-hHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKG---NVTIKLWDLGGQPRFRS-MWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||++++.++.+...+.++. .....+... .+.+.+|||||++.+.. .+..+++.+|+++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 457999999999999999999999988877765443 333334433 68999999999999887 7888899999999
Q ss_pred EEEeCCCCC-ChHHHHHHHHHHhcC--CCCCCCcEEEEeeCCCccCcCCHhHHHHHcC----------------------
Q 029978 93 YVVDAADYD-NLPVSRSELHDLLSK--PSLNGIPLLVLGNKIDKPEALSKEDLMEQMG---------------------- 147 (184)
Q Consensus 93 ~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---------------------- 147 (184)
+|+|+++.. ++.....++..+... ....++|+++|+||+|+......++..+.+.
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999998743 344455555544322 2335799999999999987655433332211
Q ss_pred -CCCcC---------C--CceeEEEeeeCCC------CCHHHHHHHHHHHh
Q 029978 148 -LKSIT---------D--REVCCYMISCKNS------TNIDTVIDWLVKHS 180 (184)
Q Consensus 148 -~~~~~---------~--~~~~~~~~Sa~~~------~~v~~l~~~i~~~~ 180 (184)
..... . ..+++++|||++| .||++++++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 00111 0 1678999999999 99999999998753
No 86
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-30 Score=184.14 Aligned_cols=160 Identities=20% Similarity=0.325 Sum_probs=119.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeCC--EEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+.... .+.... +.+.+|||||++.+...+..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45699999999999999999999999888777777764433 333333 78999999999999888899999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+.. ..++..+... ...++++++||+++.||+
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ-----ENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999999988888877765432 3578999999999997532 2222222211 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 029978 171 TVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
+++++|.+.+.+
T Consensus 165 ~l~~~l~~~i~~ 176 (223)
T 3cpj_B 165 KAFEELINTIYQ 176 (223)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 87
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4e-29 Score=174.10 Aligned_cols=157 Identities=18% Similarity=0.275 Sum_probs=123.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+.... .+. ...+.+.+|||||++++...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 35689999999999999999999999888888888765442 222 344889999999999999889999999999999
Q ss_pred EEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcC--------------CHhHH---HHHcCCCCcCCCc
Q 029978 94 VVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEAL--------------SKEDL---MEQMGLKSITDRE 155 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~--------------~~~~~---~~~~~~~~~~~~~ 155 (184)
|+|+++++++.... .|+..+.... .++|+++|+||+|+.+.. ..++. .+..+ .
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 166 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG-------A 166 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT-------C
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC-------C
Confidence 99999998888887 5555554432 479999999999997641 11111 11111 1
Q ss_pred eeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 156 VCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
.+++++||++|.|++++++++.+.+..
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 269999999999999999999987653
No 88
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=7.9e-30 Score=178.14 Aligned_cols=162 Identities=19% Similarity=0.281 Sum_probs=125.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...++|+++|++|||||||++++.++.+...+.+|.+..+.. .+...+.+.+|||||++.+...+..+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 457999999999999999999999988887777777654432 22334689999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++.....++..+..... ..+.|+++|+||+|+.+... .++...... ...++++++||++|.|+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-----EWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Confidence 9999998888877776655543211 24789999999999976322 222222111 1124699999999999999
Q ss_pred HHHHHHHHhhhc
Q 029978 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
++++|.+.+.+.
T Consensus 161 l~~~l~~~~~~~ 172 (199)
T 2gf0_A 161 LFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHCSSS
T ss_pred HHHHHHHHHhhh
Confidence 999999887643
No 89
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.96 E-value=7.6e-30 Score=176.45 Aligned_cols=157 Identities=18% Similarity=0.304 Sum_probs=122.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...++|+++|++|+|||||++++.++.+...+.+|.+.... .++...+.+.+|||||++.+...+..+++.+|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 45799999999999999999999999888877888765443 223445789999999999998888899999999999
Q ss_pred EEeCCCCCChHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCccCc--------------CCHhH---HHHHcCCCCcCCCc
Q 029978 94 VVDAADYDNLPVS-RSELHDLLSKPSLNGIPLLVLGNKIDKPEA--------------LSKED---LMEQMGLKSITDRE 155 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~--------------~~~~~---~~~~~~~~~~~~~~ 155 (184)
|+|+++++++..+ ..|...+.... .+.|+++|+||+|+.+. ...++ ..+.++ .
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 155 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------A 155 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------C
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC-------C
Confidence 9999999888887 45555554322 47999999999999742 11111 111111 2
Q ss_pred eeEEEeeeC-CCCCHHHHHHHHHHHhhh
Q 029978 156 VCCYMISCK-NSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~-~~~~v~~l~~~i~~~~~~ 182 (184)
+++++|||+ ++.|++++|+.+.+.+.+
T Consensus 156 ~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 156 ATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp SEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred cEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 479999999 689999999999988764
No 90
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=2e-29 Score=177.91 Aligned_cols=159 Identities=25% Similarity=0.431 Sum_probs=124.1
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeCC--EEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
.....++|+++|++|+|||||++++.+..+...+.+|.+.... .+.... +.+.+|||||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 3456799999999999999999999998888777777765443 344344 789999999999998888899999999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhH---HHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KED---LMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+++|+|+++..++..+..|+..+.... ..++|+++|+||+|+..... .++ +.+..+ ++++++||+++
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~ 166 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKELG--------IPFIESSAKND 166 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT--------CCEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHHHcC--------CEEEEEeCCCC
Confidence 999999999888888877777665432 25789999999999954322 222 222222 36999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 029978 167 TNIDTVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~ 182 (184)
.|+++++++|.+.+.+
T Consensus 167 ~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 167 DNVNEIFFTLAKLIQE 182 (213)
T ss_dssp BSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987754
No 91
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=1e-29 Score=178.07 Aligned_cols=163 Identities=19% Similarity=0.204 Sum_probs=115.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEee--CCEEEEEEeCCCcccchHhHHHhccCCCE
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (184)
....+.++|+++|++|+|||||++++.++.+...+.+|.+..+. .+.. ..+.+.+|||||++.+...+..+++.+|+
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 34466799999999999999999999998888777787764442 2222 34678899999999998888889999999
Q ss_pred EEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcC--------------CHhHHHHHcCCCCcCCCc
Q 029978 91 IVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEAL--------------SKEDLMEQMGLKSITDRE 155 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~ 155 (184)
+++|+|+++++++..+. .|+..+.... .++|+++|+||+|+.+.. ..++....... ...
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~ 168 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEE----IKA 168 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHh----cCC
Confidence 99999999999888886 4555554432 479999999999997531 11111111100 011
Q ss_pred eeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 156 VCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
.++++|||++|.|++++++++.+.+.+
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 369999999999999999999987753
No 92
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.9e-30 Score=181.45 Aligned_cols=159 Identities=19% Similarity=0.208 Sum_probs=115.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--CCCCCCCCcccee--e--EEeeCCEEEEEEeCCCccc-chHhHHHhccCCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--YSEDMIPTVGFNM--R--KVTKGNVTIKLWDLGGQPR-FRSMWERYCRAVS 89 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--~~~~~~~t~~~~~--~--~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~ 89 (184)
...+||+++|++|||||||++++.+.. +...+. +++.+. . .++...+.+.+|||+|++. +......+++.++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~-~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC-ccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 345999999999999999999998643 233332 333322 2 2333446788999999876 4556667788999
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|||+++.++|..+..|+..+.......++|+++|+||+|+.+.. ..++... .. ....+++++|||++|.
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~-~a----~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-CA----VVFDCKFIETSAAVQH 188 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-HH----HHHTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHH-HH----HHcCCEEEEEeCCCCC
Confidence 999999999999999988887777654333579999999999997532 2222111 11 0112469999999999
Q ss_pred CHHHHHHHHHHHhh
Q 029978 168 NIDTVIDWLVKHSK 181 (184)
Q Consensus 168 ~v~~l~~~i~~~~~ 181 (184)
||+++|+.+.+.+.
T Consensus 189 ~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 189 NVKELFEGIVRQVR 202 (211)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998775
No 93
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=7.5e-30 Score=179.32 Aligned_cols=161 Identities=16% Similarity=0.226 Sum_probs=92.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC--CCCCCCCCCccc--eeeEEeeC----CEEEEEEeCCCcccchHhHHHhccCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG--GYSEDMIPTVGF--NMRKVTKG----NVTIKLWDLGGQPRFRSMWERYCRAV 88 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~--~~~~~~~~t~~~--~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (184)
...++|+++|++|+|||||++++.++ .+...+.+|.+. ....+... .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999988 777777777763 23333333 67899999999999999999999999
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCccC-c--CCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSKPS--LNGIPLLVLGNKIDKPE-A--LSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
|++++|+|++++.++..+..|+..+..... ..++|+++|+||+|+.+ . ...++..+.... ..++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT-----NTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH-----TTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH-----cCCEEEEecc
Confidence 999999999999989888888777765433 25799999999999976 2 222333222211 1247999999
Q ss_pred CC-CCCHHHHHHHHHHHhhh
Q 029978 164 KN-STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~-~~~v~~l~~~i~~~~~~ 182 (184)
++ +.|+++++++|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987653
No 94
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.96 E-value=1.5e-29 Score=177.97 Aligned_cols=157 Identities=18% Similarity=0.301 Sum_probs=122.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE---EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+..++|+++|++|||||||++++.++.+...+.+|.+..+.. ++...+.+.+|||||++.+...+..+++.+|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 457999999999999999999999998888778887654432 23445889999999999998888899999999999
Q ss_pred EEeCCCCCChHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCccCc--------------CCHhH---HHHHcCCCCcCCCc
Q 029978 94 VVDAADYDNLPVS-RSELHDLLSKPSLNGIPLLVLGNKIDKPEA--------------LSKED---LMEQMGLKSITDRE 155 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~--------------~~~~~---~~~~~~~~~~~~~~ 155 (184)
|||+++++++..+ ..|...+.... .+.|+++|+||+|+.+. ...++ ..+.++ .
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 176 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------A 176 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------C
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC-------C
Confidence 9999999888887 45555554332 47999999999999742 11111 111111 2
Q ss_pred eeEEEeeeC-CCCCHHHHHHHHHHHhhh
Q 029978 156 VCCYMISCK-NSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~-~~~~v~~l~~~i~~~~~~ 182 (184)
.++++|||+ ++.|++++|+.+.+.+.+
T Consensus 177 ~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 177 ATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 479999999 689999999999988754
No 95
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=8.7e-30 Score=176.24 Aligned_cols=162 Identities=15% Similarity=0.295 Sum_probs=113.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcC--CCCCCCCCCccceeeEEe-------eCCEEEEEEeCCCcccchHhHHHhccCCC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATG--GYSEDMIPTVGFNMRKVT-------KGNVTIKLWDLGGQPRFRSMWERYCRAVS 89 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~--~~~~~~~~t~~~~~~~~~-------~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (184)
.++|+++|++|||||||++++.+. .+...+.+|.+....... ...+.+.+|||+|++.+...+..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999974 455566777776654322 24678999999999998888888889999
Q ss_pred EEEEEEeCCCC-CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHh----HHHHHcCCCCcCCCceeEEEeeeC
Q 029978 90 AIVYVVDAADY-DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE----DLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 90 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++++|+|+++. .++..+..|+..+.... .+.|+++|+||+|+.+..... +..+.+..........+++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 46777878877765432 478999999999996542211 112222211111111248999999
Q ss_pred CCC-CHHHHHHHHHHHhhh
Q 029978 165 NST-NIDTVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~-~v~~l~~~i~~~~~~ 182 (184)
++. |++++++.|.+.+.+
T Consensus 160 ~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 160 EESDALAKLRKTIINESLN 178 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 997 999999999988764
No 96
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.96 E-value=9.2e-30 Score=180.86 Aligned_cols=160 Identities=22% Similarity=0.402 Sum_probs=126.8
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE----EeeCCEEEEEEeCCCcccchHhHHHhccCCCEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (184)
....++|+++|++|||||||+++++.+.+...+.+|.+..... .+...+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 3456999999999999999999988777777777777654443 233457899999999999988889999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|+|+++..++..+..|+..+.... .++|+++|+||+|+.+.....+. ........++++++||++|.|+++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKS-----IVFHRKKNLQYYDISAKSNYNFEK 164 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGG-----CCHHHHHTCEEEECBGGGTBTTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHH-----HHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999988888877776542 47899999999999764322211 111112245799999999999999
Q ss_pred HHHHHHHHhhh
Q 029978 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
++++|.+.+..
T Consensus 165 l~~~l~~~l~~ 175 (221)
T 3gj0_A 165 PFLWLARKLIG 175 (221)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 97
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=1.1e-27 Score=164.41 Aligned_cols=163 Identities=20% Similarity=0.331 Sum_probs=120.9
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcc--ceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG--FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..++.++|+++|++|+|||||++++.++.+.....++.. .....+...+..+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 346789999999999999999999998887766555443 334455667788999999999998888888889999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc--CC--CceeEEEeeeCCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI--TD--REVCCYMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~Sa~~~~~ 168 (184)
+|+|+++....... ..+..+. ..++|+++|+||+|+.+. ..++....+..... .. ..++++++||++|.|
T Consensus 84 ~v~d~~~~~~~~~~-~~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQTV-EAINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHHH-HHHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHHH-HHHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 99999875433222 2223222 247899999999999764 33444443322111 11 236899999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029978 169 IDTVIDWLVKHSKSK 183 (184)
Q Consensus 169 v~~l~~~i~~~~~~~ 183 (184)
+++++++|.+.+...
T Consensus 158 v~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 158 LDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999887643
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=7.4e-31 Score=184.33 Aligned_cols=174 Identities=18% Similarity=0.251 Sum_probs=127.0
Q ss_pred HHHHHHHHhh-ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee---EEeeCCEEEEEEeCCCcccchHh
Q 029978 5 EAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~ 80 (184)
.....++.+. ..++.++|+++|++|+|||||++++.++.+...+.+|...... ..+...+.+.+|||||++.+...
T Consensus 15 ~~~~~~m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 94 (204)
T 3th5_A 15 VPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL 94 (204)
Confidence 3444555553 3356799999999999999999999988887776666653332 23455678889999999999999
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH---------HHHHcCCCC
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED---------LMEQMGLKS 150 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~---------~~~~~~~~~ 150 (184)
+..+++.+|++++|+|++++.++.... .|+..+... . .++|+++|+||+|+.+.....+ +........
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~-~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (204)
T 3th5_A 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172 (204)
Confidence 999999999999999999999998887 444444332 2 3799999999999976422111 111111111
Q ss_pred cCCCce-eEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 151 ITDREV-CCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 151 ~~~~~~-~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
...... +++++||++|.|++++++.|.+.+
T Consensus 173 ~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 173 AKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 222233 789999999999999999998764
No 99
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.96 E-value=3.7e-31 Score=185.28 Aligned_cols=158 Identities=25% Similarity=0.435 Sum_probs=117.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eEEeeCC--EEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|||||||++++.++.+...+.++.+... ..+.... +.+.+|||||++.+...+..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 3469999999999999999999998887776666555333 3333333 78999999999999888889999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC-----CHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-----SKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|+++.+++..+..|+..+.... ..++|+++|+||+|+.+.. ..++..+.. .++++++||++|.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNAT 181 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT--------TCCBCCCCC---H
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHHHc--------CCeEEEEECCCCC
Confidence 9999999999999888877775543 3689999999999996542 222332222 3468999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 029978 168 NIDTVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~~~~~ 183 (184)
|+++++++|.+.+.+.
T Consensus 182 gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 182 NVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887653
No 100
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.95 E-value=4.8e-29 Score=173.71 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=111.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC--CCCCCCCCCcccee--e--EEeeCCEEEEEEeCCCccc-chHhHHHhccCCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG--GYSEDMIPTVGFNM--R--KVTKGNVTIKLWDLGGQPR-FRSMWERYCRAVS 89 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~--~~~~~~~~t~~~~~--~--~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~ 89 (184)
...++|+++|++|||||||++++.+. .+...+.+ ++.+. . .++...+.+.+|||+|++. +......+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV-LGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GG-GCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccc-cceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 45699999999999999999999853 23333322 33222 2 2333446788999999865 4445567778899
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|||+++.++|.....|+..+.......++|+++|+||+|+..... .++.. ... ....+++++|||++|.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~-~~a----~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR-AXA----VVFDXKFIETSAAVQH 157 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH-HHH----HHTTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH-HHH----HHhCCceEEeccccCC
Confidence 9999999999999999888877665433335799999999999865322 22211 110 0112469999999999
Q ss_pred CHHHHHHHHHHHhh
Q 029978 168 NIDTVIDWLVKHSK 181 (184)
Q Consensus 168 ~v~~l~~~i~~~~~ 181 (184)
||+++|+.+.+.+.
T Consensus 158 ~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 158 NVKELFEGIVRQVR 171 (192)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 101
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.95 E-value=8.2e-29 Score=172.95 Aligned_cols=162 Identities=20% Similarity=0.289 Sum_probs=109.9
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eE--Ee-eCCEEEEEEeCCCcccchHhH---HHhcc
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RK--VT-KGNVTIKLWDLGGQPRFRSMW---ERYCR 86 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~--~~-~~~~~~~~~D~~g~~~~~~~~---~~~~~ 86 (184)
..++.+||+++|++|||||||++++.+. +......+..... .. +. ...+.+.+|||||++++.... ..+++
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 4456799999999999999999988753 3333222222111 11 22 456899999999999987766 78899
Q ss_pred CCCEEEEEEeCCCC--CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC----HhHHHH----HcCCCCcCCCce
Q 029978 87 AVSAIVYVVDAADY--DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS----KEDLME----QMGLKSITDREV 156 (184)
Q Consensus 87 ~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~----~~~~~~~~~~~~ 156 (184)
.+|++++|||+++. +++.....|+..+.. ...++|+++|+||+|+.+... .+++.. .+.........+
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 99999999999987 344444445554422 225899999999999865311 112211 111111123457
Q ss_pred eEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 157 CCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
++++|||++ .||+++|+.+.+.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 899999999 99999999998765
No 102
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=2.1e-27 Score=162.61 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=108.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccchH--------hHHHhc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS--------MWERYC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~ 85 (184)
+++.+|+++|++|+|||||++++.+.... ..+..|.......+...+..+.+|||||++.+.. ....++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 35689999999999999999999976542 1222333333444555667899999999865321 112457
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+.+|++++|+|+++..++.. ..|+..+.... ..++|+++|+||+|+.+... ........+++++||++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSART 149 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCC
Confidence 89999999999999888763 35555554332 25799999999999854311 11111346799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 029978 166 STNIDTVIDWLVKHSK 181 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~ 181 (184)
|.|++++++.|.+.+.
T Consensus 150 g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CTTHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999988764
No 103
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=2e-27 Score=165.43 Aligned_cols=162 Identities=19% Similarity=0.176 Sum_probs=107.4
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee--eEEeeCCEEEEEEeCCC----------cccchHhH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGG----------QPRFRSMW 81 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g----------~~~~~~~~ 81 (184)
.+....++|+++|++|+|||||++++.+..+.....++.+... ...... ..+.+||||| ++.+...+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 3445679999999999999999999998775555444443222 112222 2699999999 66777777
Q ss_pred HHhccCC---CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeE
Q 029978 82 ERYCRAV---SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCC 158 (184)
Q Consensus 82 ~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
..+++.+ |++++|+|+++..++.... +...+.. .+.|+++|+||+|+.+.....+..+.+.........+++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 7777666 9999999999877766532 1122221 568999999999997754333222222111112235689
Q ss_pred EEeeeCCCCCHHHHHHHHHHHhh
Q 029978 159 YMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 159 ~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+++||++|.|++++++++.+.+.
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999998775
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=1.5e-26 Score=157.29 Aligned_cols=149 Identities=22% Similarity=0.251 Sum_probs=107.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCC--ccceeeEEeeCCEEEEEEeCCCcccch------HhHHHhcc--C
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPT--VGFNMRKVTKGNVTIKLWDLGGQPRFR------SMWERYCR--A 87 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 87 (184)
+.++|+++|++|+|||||++++.+..+.....++ .......+...+..+.+|||||++.+. .....+++ .
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 3579999999999999999999987654443343 333344455567899999999988763 33445554 7
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC----CHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++++++|+|+++. .....|+..+.. .++|+++|+||+|+.... ..+++.+..+ ++++++||
T Consensus 82 ~~~~i~v~D~~~~---~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA 146 (165)
T 2wji_A 82 PDLVVNIVDATAL---ERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSA 146 (165)
T ss_dssp CSEEEEEEETTCH---HHHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBG
T ss_pred CCEEEEEecCCch---hHhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEc
Confidence 9999999999863 334445555543 368999999999986431 2334444433 35999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
++|.|++++++.+.+.++
T Consensus 147 ~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 147 AKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGTBSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998764
No 105
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=4.1e-27 Score=168.01 Aligned_cols=162 Identities=15% Similarity=0.158 Sum_probs=109.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCC--CCCccceeeEEeeCCEEEEEEeCCCc------ccc---hHhHHHhc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQ------PRF---RSMWERYC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~------~~~---~~~~~~~~ 85 (184)
.+.++|+++|++|||||||++++.+..+.... ..|..............+.+|||||+ +.. ...+..+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 45799999999999999999999987664222 22333444445556789999999998 331 12233456
Q ss_pred cCCCEEEEEEeCCCCCChHHH--HHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH----HHHHcCCCCcCCCceeEE
Q 029978 86 RAVSAIVYVVDAADYDNLPVS--RSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED----LMEQMGLKSITDREVCCY 159 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 159 (184)
..+|++++|+|+++..++... ..++..+... ..+.|+++|+||+|+.+...... ..+.+. ......++++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 182 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQIL--DNVKNPIKFS 182 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHH--HHCCSCEEEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHH--HhcCCCceEE
Confidence 788999999999998887532 2344444332 24799999999999976432211 111111 0111226799
Q ss_pred EeeeCCCCCHHHHHHHHHHHhhh
Q 029978 160 MISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+|||++|.||++++++|.+.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 106
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=9e-28 Score=177.58 Aligned_cols=157 Identities=22% Similarity=0.282 Sum_probs=115.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC---CCCCCccceeeEEeeCCEEEEEEeCCCcccchH---hHHHhccCCCEEEEE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS---MWERYCRAVSAIVYV 94 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~i~v 94 (184)
||+++|+.|||||||++++.++.++. ...+|++.....+. ..+++++|||+||++|.. ....++++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999887654433 35788887776663 458999999999999964 468899999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcC--CCCCCCcEEEEeeCCCccCcCCH----hHHHHHcCCCCcC----CCceeEEEeeeC
Q 029978 95 VDAADYDNLPVSRSELHDLLSK--PSLNGIPLLVLGNKIDKPEALSK----EDLMEQMGLKSIT----DREVCCYMISCK 164 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~Sa~ 164 (184)
||+++. +.....+|..++.. ...+++|+++|+||+|+.+.... +++..+.+..... ...++|++|||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 44445555443221 11257999999999999764221 2333333322222 246789999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 029978 165 NSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~ 181 (184)
+ .||.+.|..+++.+.
T Consensus 158 d-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp S-SHHHHHHHHHHTTSS
T ss_pred C-CcHHHHHHHHHHHHH
Confidence 8 589999999987654
No 107
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=5.9e-28 Score=167.36 Aligned_cols=161 Identities=19% Similarity=0.201 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCC-----------cccchHhHHHhccC-
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG-----------QPRFRSMWERYCRA- 87 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~~~- 87 (184)
++|+++|++|+|||||++++.+..+...+.++........... .+.+||||| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999999888777666665555555444 689999999 56667777777766
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHH---------HhcCCCCCCCcEEEEeeCCCccCcC--CHhHHHHHcCCCCcCCCce
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHD---------LLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREV 156 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (184)
++++++++++.+..++......|.. +.......++|+++|+||+|+.... ..+++.+.++.... ....
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLS-EIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGG-GHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhh-ccCC
Confidence 6666666666666677665332221 2222222579999999999997643 23344445544211 1134
Q ss_pred eEEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 157 CCYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
+++++||++|.|++++++++.+.+.+.
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 689999999999999999999987654
No 108
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.94 E-value=6.9e-27 Score=175.16 Aligned_cols=166 Identities=18% Similarity=0.246 Sum_probs=123.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeE-E--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRK-V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+..++|+++|++|+|||||++++.++.+...+.+|....... + +...+.+.+|||||++.+...+..+++.+|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3567999999999999999999999988888877777644432 2 233467779999999999988899999999999
Q ss_pred EEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc---------CCCc-eeEEEe
Q 029978 93 YVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI---------TDRE-VCCYMI 161 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~ 161 (184)
+|+|++++.++..+. .|...+.... .++|+++|+||+|+.+.....+.......... .... .++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 999999988888876 4444444322 37999999999999654211111111111000 0012 379999
Q ss_pred eeCCCCCHHHHHHHHHHHhhhc
Q 029978 162 SCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
||++|.|++++++.+.+.+...
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999887643
No 109
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=2.6e-26 Score=155.01 Aligned_cols=148 Identities=17% Similarity=0.231 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCccc-------chHhHHHhccCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-------FRSMWERYCRAVS 89 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~~ 89 (184)
.+|+++|++|+|||||++++.+..+. .....+...........+..+.+|||||++. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999987643 1222233344445556677999999999876 3455667889999
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCce-eEEEeeeCCCCC
Q 029978 90 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREV-CCYMISCKNSTN 168 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 168 (184)
++++|+|+++..+.. ..++..+... .+.|+++|+||+|+.+. ++....+. .... +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~---~~~~~~~~-----~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKH---ELYLGPLY-----GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGG---GGGCGGGG-----GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccc---hHhHHHHH-----hCCCCCeEEEecccCCC
Confidence 999999999864432 3333333332 46899999999999765 11111111 1122 589999999999
Q ss_pred HHHHHHHHHHHh
Q 029978 169 IDTVIDWLVKHS 180 (184)
Q Consensus 169 v~~l~~~i~~~~ 180 (184)
++++++++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998865
No 110
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=2e-26 Score=160.20 Aligned_cols=162 Identities=18% Similarity=0.161 Sum_probs=107.8
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee-EEeeCCEEEEEEeCCC----------cccchHhHHH
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGG----------QPRFRSMWER 83 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g----------~~~~~~~~~~ 83 (184)
+....++|+++|++|+|||||++++.+... ....++.+.... .....+..+.+||||| ++.+...+..
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 345568999999999999999999998763 223333332211 1112234688999999 5566666666
Q ss_pred hccCC---CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEE
Q 029978 84 YCRAV---SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 84 ~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+++.+ +++++|+|+++....... .+...+.. .+.|+++|+||+|+.+....+...+...........+++++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence 66655 999999999876543322 11222211 26899999999999765443333333221111123357999
Q ss_pred eeeCCCCCHHHHHHHHHHHhhh
Q 029978 161 ISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+||++|.|++++++++.+.+.+
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC-
T ss_pred EecCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999998865
No 111
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.94 E-value=2.7e-27 Score=165.58 Aligned_cols=159 Identities=19% Similarity=0.312 Sum_probs=119.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EE--eeCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...++|+++|++|||||||++++.+..+...+.+|.+.... .+ +...+.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45689999999999999999999998888777777664332 23 333467889999999988888888888999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++..++.....|+..+... ...+.|+++|+||+|+.+... .++...... ...+.++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 999999887777776666555432 225789999999999975322 222222111 123468999999999999
Q ss_pred HHHHHHHHHhh
Q 029978 171 TVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
++++.+.+.+.
T Consensus 157 ~l~~~l~~~~~ 167 (199)
T 2f9l_A 157 EAFKNILTEIY 167 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 112
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=8.4e-26 Score=167.86 Aligned_cols=161 Identities=18% Similarity=0.136 Sum_probs=119.1
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeC-CEEEEEEeCCCcccch----------HhH
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPRFR----------SMW 81 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~----------~~~ 81 (184)
..+.-.|+++|.+|||||||++++++..+. .....|........... ...+.+|||||+.+.. ...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 355678999999999999999999987654 33344544444556666 8999999999985433 566
Q ss_pred HHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc-CcCCHhHHHHHcCCCCcCCCceeEEE
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP-EALSKEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
..+++.+|++++|+|+++..+......|+..+.. .++|+++|+||+|+. +.....+..+.+.... ....++++
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~~ 160 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIVP 160 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEEE
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEEE
Confidence 7778899999999999998877776554555443 468999999999997 4433333333222111 12346999
Q ss_pred eeeCCCCCHHHHHHHHHHHhhh
Q 029978 161 ISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+||++|.|++++++.+.+.+.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCB
T ss_pred EeCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999988753
No 113
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.9e-27 Score=172.41 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=113.2
Q ss_pred cCCceEEEEEcCC---------CCChHHHHHHHHc---CCCCCCCCCCc-cceee------------------EEeeCCE
Q 029978 16 FKQEMELSLIGLQ---------NAGKTSLVNVIAT---GGYSEDMIPTV-GFNMR------------------KVTKGNV 64 (184)
Q Consensus 16 ~~~~~~i~iiG~~---------g~GKStli~~l~~---~~~~~~~~~t~-~~~~~------------------~~~~~~~ 64 (184)
....+||+++|.+ |||||||++++.+ +.+...+.+|+ +..+. .++...+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3456999999999 9999999999998 55666665654 22111 1344568
Q ss_pred EEEEEe-----------------------CCCcccchHhHHHhcc---------------------CCCEEEEEEeCCCC
Q 029978 65 TIKLWD-----------------------LGGQPRFRSMWERYCR---------------------AVSAIVYVVDAADY 100 (184)
Q Consensus 65 ~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~ 100 (184)
.+.+|| ++|++++...+..+++ .+|++++|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 899999 5566666656666665 79999999999998
Q ss_pred --CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 101 --DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 101 --~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
+++..+..|+..+.......++|+++|+||+|+.+....++..+.... ...++++++||++|.|++++++.|.+
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS----KKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT----SSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh----cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 899999888877765422357999999999999654222222221111 12357999999999999999999998
Q ss_pred Hhh
Q 029978 179 HSK 181 (184)
Q Consensus 179 ~~~ 181 (184)
.+.
T Consensus 252 ~l~ 254 (255)
T 3c5h_A 252 LID 254 (255)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 114
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=9.4e-26 Score=166.90 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=112.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCCccceeeEEeeCCEEEEEEeCCCccc--------chHhHHHhcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCR 86 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 86 (184)
+..+|+++|.+|+|||||++++++..+.. .+..|...........+..+.+|||||..+ +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 34679999999999999999999876642 233344333334556789999999999875 4455667889
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+|++++|+|+++..+.. ..++...+.... .+.|+++|+||+|+..... ..+..+.+ ....+++++||++
T Consensus 86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSALD 156 (301)
T ss_dssp SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTTC
T ss_pred cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCCC
Confidence 999999999998865433 344443333321 4799999999999975422 22333333 2234699999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 029978 166 STNIDTVIDWLVKHSK 181 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~ 181 (184)
|.|++++++.+.+.+.
T Consensus 157 g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 157 ERQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9999999999988764
No 115
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=2.1e-26 Score=171.01 Aligned_cols=161 Identities=19% Similarity=0.216 Sum_probs=117.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEee-CCEEEEEEeCCCcccc-----hHhHHHhccCC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRF-----RSMWERYCRAV 88 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-----~~~~~~~~~~~ 88 (184)
..+||+++|++|||||||++++.++... ..+.+|.+........ +.+.+.+|||||++.+ ...+..+++.+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 4689999999999999999999876332 3577888877766553 5789999999999988 56778888999
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcC-CCCCCCcEEEEeeCCCccCcCCHh-------HHHHHcCCCCcCCCceeEEE
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSK-PSLNGIPLLVLGNKIDKPEALSKE-------DLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 160 (184)
|++++|+|+++.+++..+..|...+... ....++|+++|+||+|+.+..... +....+... .....+++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~-~g~~~~~~~~ 160 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSE-FGFPNLIGFP 160 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHT-TTCCSCEEEE
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHH-cCCCCeEEEE
Confidence 9999999999999998886553322211 012579999999999997632111 111111110 0001357999
Q ss_pred eeeCCCCCHHHHHHHHHHHh
Q 029978 161 ISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~~ 180 (184)
+||++ .|+.+++..+.+.+
T Consensus 161 tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CCTTS-SHHHHHHHHHHHTT
T ss_pred eeecC-ChHHHHHHHHHHHH
Confidence 99999 88999988887654
No 116
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=2.5e-25 Score=153.96 Aligned_cols=151 Identities=23% Similarity=0.264 Sum_probs=112.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCc--cceeeEEeeCCEEEEEEeCCCcccch------HhHHHhcc--C
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTV--GFNMRKVTKGNVTIKLWDLGGQPRFR------SMWERYCR--A 87 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 87 (184)
+.++|+++|++|||||||++++.+..+.....++. ......+...+..+.+|||||++.+. .....++. .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 56899999999999999999999765543333333 33444566677899999999988763 34455554 5
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC----CHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++++++|+|.++ +.....++..+.. .+.|+++|+||+|+.... ..+++.+..+ ++++++||
T Consensus 86 ~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa 150 (188)
T 2wjg_A 86 PDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSA 150 (188)
T ss_dssp CSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBG
T ss_pred CCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEEEe
Confidence 899999999985 4555556555544 478999999999986432 3344444443 35999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 029978 164 KNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~~~ 183 (184)
+++.|++++++.+.+.+.+.
T Consensus 151 ~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 151 AKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp GGTBSHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999887653
No 117
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=2.2e-26 Score=163.50 Aligned_cols=164 Identities=17% Similarity=0.187 Sum_probs=108.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCCCC----CCCCCCccceeeEEe-eCCEEEEEEeCCCc----------ccch
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYS----EDMIPTVGFNMRKVT-KGNVTIKLWDLGGQ----------PRFR 78 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~----~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~----------~~~~ 78 (184)
.+....++|+++|.+|+|||||++++++.... .....|......... .....+.+|||||. +.+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 44456799999999999999999999987531 112223333333333 34578999999994 3445
Q ss_pred HhHHHhccC---CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCc----
Q 029978 79 SMWERYCRA---VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI---- 151 (184)
Q Consensus 79 ~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~---- 151 (184)
.....+++. +|++++|+|+++..+ .....+...+.. .++|+++|+||+|+.+.....+..+.+.....
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 555555554 788999999987543 333333333332 56899999999999765332222221111100
Q ss_pred --CCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 152 --TDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 152 --~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
.....+++++||++|.|++++++.|.+.+..
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 1245689999999999999999999988764
No 118
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.93 E-value=2e-26 Score=160.23 Aligned_cols=158 Identities=18% Similarity=0.311 Sum_probs=119.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEe--eCCEEEEEEeCCCcccchHhHHHhccCCCEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|||||||++++.+..++..+.+|.+.... .+. ...+.+.+||++|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 34589999999999999999999999888888888775442 233 33466778999999988888888888999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++..++..+..|+..+... ...+.|+++|+||+|+.+... .++...... ...+.++++||+++.|++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNGLSFIETSALDSTNVE 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 999999887777776666554332 225789999999999975322 222221111 123468999999999999
Q ss_pred HHHHHHHHHh
Q 029978 171 TVIDWLVKHS 180 (184)
Q Consensus 171 ~l~~~i~~~~ 180 (184)
++++.+.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=4.1e-26 Score=181.03 Aligned_cols=156 Identities=23% Similarity=0.319 Sum_probs=107.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEE------------eeCCEEEEEEeCCCcccchHhHHHh
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKV------------TKGNVTIKLWDLGGQPRFRSMWERY 84 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~------------~~~~~~~~~~D~~g~~~~~~~~~~~ 84 (184)
.+.+||+++|.+|||||||++++.+..+.....+|.+...... +...+.+.+|||||++.+......+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 4569999999999999999999999888888888887665532 1235899999999999998888889
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEee
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
++.+|++++|+|+++. .....|...+.... .+.|+++|+||+|+.+... .++..+.... ...+++++|
T Consensus 119 l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~vS 188 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPA-----IENRFHRIS 188 (535)
T ss_dssp HHSSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGG-----GTTCEEECC
T ss_pred ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHh-----cCCceEEEe
Confidence 9999999999999865 44455555554432 3689999999999976432 2333332221 123699999
Q ss_pred eCCCCCHHHHHHHHHHHhhh
Q 029978 163 CKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~~ 182 (184)
|++|.|++++++.+.+.+.+
T Consensus 189 A~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp C-----CTTHHHHHHHHHTC
T ss_pred cCcccCHHHHHHHHHHHHhc
Confidence 99999999999999988764
No 120
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=2.9e-25 Score=172.21 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=112.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCc----------ccchHhHH-H
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ----------PRFRSMWE-R 83 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~-~ 83 (184)
..++|+++|.+|||||||++++++..+. .....|.......+...+..+.+|||||+ +.+..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 4589999999999999999999977642 22333444444456667778999999997 44443333 4
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEe
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++.+|++++|+|+++..+++.. .+...+.. .++|+++|+||+|+.+... .++..+.+.........++++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 67889999999999998887765 34443332 4789999999999976533 23343333222222234579999
Q ss_pred eeCCCCCHHHHHHHHHHHhhh
Q 029978 162 SCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
||++|.|++++++.+.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999887653
No 121
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.92 E-value=1.3e-24 Score=157.72 Aligned_cols=150 Identities=20% Similarity=0.235 Sum_probs=111.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCC--CCCccceeeEEeeCCEEEEEEeCCCcccchH------hHHHhc--c
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYC--R 86 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~ 86 (184)
.+.++|+++|++|||||||++++++..+.... ..|.......+......+.+|||||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45689999999999999999999986654332 3344444445666778999999999876643 234444 5
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC----CHhHHHHHcCCCCcCCCceeEEEee
Q 029978 87 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMIS 162 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.+|++++|+|+++.+. ...++..+.. .++|+++|+||+|+.... ..+++.+.++ ++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~---~~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQ---SLYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHH---HHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECC
T ss_pred CCCEEEEEeCCCchhh---HHHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEE
Confidence 8999999999997543 2334455543 379999999999986431 2344555544 3699999
Q ss_pred eCCCCCHHHHHHHHHHHhh
Q 029978 163 CKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~~~ 181 (184)
|++|.|++++++.+.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998765
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=1.2e-24 Score=158.78 Aligned_cols=148 Identities=28% Similarity=0.343 Sum_probs=106.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEeeCCEEEEEEeCCCcccch------HhHHHhcc--C
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFR------SMWERYCR--A 87 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 87 (184)
..++|+++|++|||||||++++.+........+ |.......+.. ...+.+|||||++.+. .....++. .
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 357999999999999999999997654333333 33333333443 5679999999988764 34455554 6
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc----CCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA----LSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+|++++|+|+++.+ ....+...+.. .++|+++|+||+|+... ...+++.+.++ ++++++||
T Consensus 81 ~d~vi~V~D~t~~e---~~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNLE---RNLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBT
T ss_pred CCEEEEEecCCchH---hHHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEc
Confidence 99999999998743 22334444443 47899999999998543 23344444443 36999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
++|.|++++++.+.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999988654
No 123
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=1.6e-24 Score=168.81 Aligned_cols=160 Identities=17% Similarity=0.169 Sum_probs=111.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCC----------cccchHhHH-H
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGG----------QPRFRSMWE-R 83 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~-~ 83 (184)
..++|+++|.+|+|||||++++.+... ......|.......+...+..+.+||||| ++.+..... .
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 469999999999999999999996542 22233344444455666778999999999 666665544 4
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEe
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++.+|++++|+|+++... ....++...... .++|+++|+||+|+.+... .++..+.+.........++++++
T Consensus 274 ~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 348 (456)
T ss_dssp HHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 6788999999999987443 333344433332 4689999999999976432 23333333322222234579999
Q ss_pred eeCCCCCHHHHHHHHHHHhhh
Q 029978 162 SCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
||++|.|++++++.+.+.+.+
T Consensus 349 SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 349 SALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999987753
No 124
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=3.5e-24 Score=166.98 Aligned_cols=154 Identities=18% Similarity=0.141 Sum_probs=97.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhH--------HHhc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW--------ERYC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 85 (184)
+.+++|+++|.+|+|||||+|++.+... ......|.......+...+..+.+|||||+..+...+ ..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 4679999999999999999999987642 2223334444445566778899999999987655433 3367
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH--HHHHcCCCCcCCCceeEEEeee
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED--LMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+.+|++++|+|++++.++.....+ ..+.... .++|+++|+||+|+.+....+. +.+. + ..+++++||
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~-~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~-------~~~~i~vSA 379 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEI-RELKAAH--PAAKFLTVANKLDRAANADALIRAIADG-T-------GTEVIGISA 379 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHH-HHHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH-H-------TSCEEECBT
T ss_pred ccCCEEEEEEECCCCcchhhhHHH-HHHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc-C-------CCceEEEEE
Confidence 899999999999998887643222 2222222 2699999999999976543221 1111 0 136999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
++|.|+++++++|.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998875
No 125
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=7.4e-25 Score=158.70 Aligned_cols=145 Identities=23% Similarity=0.269 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEeeCCEEEEEEeCCCcccchH----------hHHHhc--
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFRS----------MWERYC-- 85 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~-- 85 (184)
.+|+++|++|||||||++++++........+ |.......+...+..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 3799999999999999999997765433333 33344455666778999999999876542 445566
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC----CHhHHHHHcCCCCcCCCceeEEEe
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+.+|++++|+|+++.+... .....+.. .++|+++|+||+|+.... ..+.+.+.++ ++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~---~l~~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHL---YLTSQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHH---HHHHHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEEC
T ss_pred CCCCEEEEEeeCCCchhHH---HHHHHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEE
Confidence 8899999999999743222 22222222 479999999999986542 2344444443 369999
Q ss_pred eeCCCCCHHHHHHHHHHH
Q 029978 162 SCKNSTNIDTVIDWLVKH 179 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~ 179 (184)
||++|.|++++++.+.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999876
No 126
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.91 E-value=1.1e-23 Score=156.54 Aligned_cols=135 Identities=19% Similarity=0.291 Sum_probs=106.1
Q ss_pred CCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCC----------CCCChHHHHHHHHHHhcCC
Q 029978 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DYDNLPVSRSELHDLLSKP 117 (184)
Q Consensus 48 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~ 117 (184)
..+|++.....++...+.+++|||+|++.++..|..++++++++++|+|++ +..++.+...++..+....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 445666666677788899999999999999999999999999999999665 5667788888888888776
Q ss_pred CCCCCcEEEEeeCCCccCc------------------CCHhHHHHHc-----CCCCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 118 SLNGIPLLVLGNKIDKPEA------------------LSKEDLMEQM-----GLKSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 118 ~~~~~piilv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
...++|+++++||+|+... .+.++..+-+ .........+.+++|||+++.||+.+|+
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 6678999999999998642 2333333221 1222334567889999999999999999
Q ss_pred HHHHHhhh
Q 029978 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
.+.+.+.+
T Consensus 311 ~v~~~Il~ 318 (327)
T 3ohm_A 311 AVKDTILQ 318 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 127
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=1.2e-24 Score=159.12 Aligned_cols=149 Identities=21% Similarity=0.260 Sum_probs=106.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEeeCCEEEEEEeCCCcccch----------HhHHHhc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFR----------SMWERYC 85 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~~~ 85 (184)
+.++|+++|.+|+|||||++++++..+.....+ |.......+...+..+.+|||||+..+. .....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 468999999999999999999998765433333 3334444455566789999999987654 1223333
Q ss_pred --cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC----CHhHHHHHcCCCCcCCCceeEE
Q 029978 86 --RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCY 159 (184)
Q Consensus 86 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
+.+|++++|+|+++.+.... +...+.. .++|+++|+||+|+.+.. ..+++.+.++ ++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLY---LTLQLLE----LGIPCIVALNMLDIAEKQNIRIEIDALSARLG--------CPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHH---HHHHHHH----HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT--------SCEE
T ss_pred hhcCCCEEEEEecCCChHHHHH---HHHHHHh----cCCCEEEEEECccchhhhhHHHHHHHHHHhcC--------CCEE
Confidence 78999999999987443322 2222322 268999999999986542 2344444443 3699
Q ss_pred EeeeCCCCCHHHHHHHHHHHhh
Q 029978 160 MISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
++||++|.|++++++.+.+.+.
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999988765
No 128
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=1e-23 Score=162.02 Aligned_cols=163 Identities=20% Similarity=0.175 Sum_probs=113.5
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCC---CCcc--------------c-----eeeEEeeCCEEEEEEeCCC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMI---PTVG--------------F-----NMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~---~t~~--------------~-----~~~~~~~~~~~~~~~D~~g 73 (184)
.++.++|+++|++++|||||++++++........ .+.. . ...........+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 3567999999999999999999998643322110 0000 0 0000011126899999999
Q ss_pred cccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC--CCCc
Q 029978 74 QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG--LKSI 151 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~--~~~~ 151 (184)
++++.......+..+|++++|+|+++..++.....++..+... ...|+++|+||+|+.+.....+..+++. +...
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999877666666665544332 1258999999999976533222222221 1111
Q ss_pred CCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 152 TDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
....++++++||++|.|+++|++.|.+.+.
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 223567999999999999999999998664
No 129
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=3.5e-23 Score=156.71 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=114.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCCccceeeEEeeCCEEEEEEeCCCcccch---------HhHHHhc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR---------SMWERYC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~ 85 (184)
...++|+++|++|+|||||++++.+..... ....|..............+.+|||||..... .......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 456899999999999999999999766422 23345555555566677899999999974321 1222344
Q ss_pred cCCCEEEEEEeCCCCC--ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 86 RAVSAIVYVVDAADYD--NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
..+|++++|+|+++.. ++.....++..+..... +.|+++|+||+|+......++..+... ...++++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeEEEeC
Confidence 5789999999998877 56666667666654322 799999999999976422222222211 12346899999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 029978 164 KNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~~ 182 (184)
++|.|++++++++.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 130
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=1.8e-23 Score=163.12 Aligned_cols=152 Identities=15% Similarity=0.238 Sum_probs=113.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcc-cch--------HhHHHh
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP-RFR--------SMWERY 84 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~ 84 (184)
+.+++|+++|.+|+|||||+|++.+... ...+..|.......+...+..+.+|||||.. .+. .....+
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 3458999999999999999999997653 2333445555556666778899999999987 543 234567
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeC
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++.+|++++|+|++++.++... ..+ +.. .++|+++|+||+|+.+....+++.+..+ ..++++++||+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAk 387 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISAL 387 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGG
T ss_pred hhcccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECC
Confidence 7899999999999998776543 222 222 3689999999999976544444443322 12358999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 029978 165 NSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~ 181 (184)
+|.|++++++.|.+.+.
T Consensus 388 tg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GTCCHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998653
No 131
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=3e-25 Score=157.14 Aligned_cols=119 Identities=26% Similarity=0.364 Sum_probs=93.9
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCC---CCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccC----
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA---- 87 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~---- 87 (184)
...+.++|+++|++|+|||||++++.+..+... +.++..... ....+.+|||||++.+...+..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 82 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 82 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhcccc
Confidence 345679999999999999999999998776542 333333222 45679999999999998888888876
Q ss_pred CCEEEEEEeCC-CCCChHHHHHHHHHHhcCC---CCCCCcEEEEeeCCCccCcCC
Q 029978 88 VSAIVYVVDAA-DYDNLPVSRSELHDLLSKP---SLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 88 ~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~~~ 138 (184)
+|++++|+|++ +.+++.....++..+.... ...++|+++|+||+|+.....
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 89999999999 8889999888887776432 235799999999999987654
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=2e-23 Score=162.00 Aligned_cols=150 Identities=20% Similarity=0.231 Sum_probs=102.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCccc---------chHhHHHhccCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR---------FRSMWERYCRAV 88 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~~ 88 (184)
+|+++|.+|||||||+|++++... ...+..|...........+..+.+|||||.+. +......+++.+
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~a 82 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 82 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhC
Confidence 799999999999999999997653 23333444555566677788999999999764 244567788999
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHH-HHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDL-MEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
|++++|+|+++..+.. ..++..+++. .++|+++|+||+|+.... ..+. .+...+ ...+++++||++|.
T Consensus 83 d~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~l-----g~~~~~~iSA~~g~ 151 (439)
T 1mky_A 83 DLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREF-EREVKPELYSL-----GFGEPIPVSAEHNI 151 (439)
T ss_dssp SEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGGG-----SSCSCEECBTTTTB
T ss_pred CEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHhc-----CCCCEEEEeccCCC
Confidence 9999999998754433 2333333332 368999999999985320 1111 111111 11147899999999
Q ss_pred CHHHHHHHHHHHhh
Q 029978 168 NIDTVIDWLVKHSK 181 (184)
Q Consensus 168 ~v~~l~~~i~~~~~ 181 (184)
|++++++.+.+.+.
T Consensus 152 gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 152 NLDTMLETIIKKLE 165 (439)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcc
Confidence 99999999998775
No 133
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.90 E-value=7.3e-23 Score=149.58 Aligned_cols=151 Identities=15% Similarity=0.165 Sum_probs=110.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCc--cceeeEEeeCCEEEEEEeCCCcccchH------hHHHhc--cC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTV--GFNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYC--RA 87 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~ 87 (184)
+.++|+++|++|||||||++++.+..+.....++. ......+...+..+.+|||||+..+.. ....++ ..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 35799999999999999999999876643344433 334445666778899999999876644 444554 68
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc----CCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA----LSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+|++++|+|+++. .....++..+... ...|+++|+||+|+.+. .....+.+.++ ++++++||
T Consensus 82 ~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~~~~Sa 147 (271)
T 3k53_A 82 ADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------VPVIPTNA 147 (271)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------SCEEECBG
T ss_pred CcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------CcEEEEEe
Confidence 9999999999874 2333444444443 23899999999997542 23445555554 36999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 029978 164 KNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~~ 182 (184)
++|.|++++++.+.+.+.+
T Consensus 148 ~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988753
No 134
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=3.8e-23 Score=155.58 Aligned_cols=133 Identities=20% Similarity=0.314 Sum_probs=103.2
Q ss_pred CCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC----------CChHHHHHHHHHHhcCCCC
Q 029978 50 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY----------DNLPVSRSELHDLLSKPSL 119 (184)
Q Consensus 50 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~ 119 (184)
+|++.....+....+.+.+|||+|++.++..|..++++++++|+|+|++++ .++.+...++..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 345555555666789999999999999999999999999999999999994 4588888888888876555
Q ss_pred CCCcEEEEeeCCCccCc-----------------CCHhHHHHHcC-----CCCc-CCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 120 NGIPLLVLGNKIDKPEA-----------------LSKEDLMEQMG-----LKSI-TDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 120 ~~~piilv~nK~D~~~~-----------------~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
.++|+++|+||+|+... ...++..+.+. +... ....+.+++|||+++.||+++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 78999999999998531 23334333221 1111 1346789999999999999999999
Q ss_pred HHHhhh
Q 029978 177 VKHSKS 182 (184)
Q Consensus 177 ~~~~~~ 182 (184)
.+.+.+
T Consensus 339 ~~~i~~ 344 (353)
T 1cip_A 339 TDVIIK 344 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
No 135
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=9.1e-23 Score=156.95 Aligned_cols=160 Identities=17% Similarity=0.191 Sum_probs=102.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC---CCCCCCCC--CccceeeEEee---------------C--------CEEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG---GYSEDMIP--TVGFNMRKVTK---------------G--------NVTIKL 68 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~---~~~~~~~~--t~~~~~~~~~~---------------~--------~~~~~~ 68 (184)
+..++|+++|+.++|||||+++|.+. .+..+..+ |+...+..... . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45699999999999999999999843 23333323 55443322110 0 268999
Q ss_pred EeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC----HhHHHH
Q 029978 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS----KEDLME 144 (184)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~ 144 (184)
|||||++++...+...+..+|++++|+|+++..........+..+... ...|+++|+||+|+.+... .+++.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999999888888888899999999999754223333333322211 2258999999999976532 223333
Q ss_pred HcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 145 QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
.+.. .....++++++||++|.|+++|++.|.+.+.
T Consensus 163 ~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 163 FVKG--TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHTT--STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHhh--cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3321 1223567999999999999999999998664
No 136
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=3.8e-24 Score=160.48 Aligned_cols=157 Identities=19% Similarity=0.259 Sum_probs=112.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCC-EEEEEEeCCCccc----chHhHHHh---ccCCCE
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPR----FRSMWERY---CRAVSA 90 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~----~~~~~~~~---~~~~~~ 90 (184)
+|+++|.+|||||||++++.+.... ..+..|.......+...+ ..+.+|||||... +..+...+ +..+++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ 239 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 239 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccE
Confidence 5899999999999999999876532 223345554444455443 6899999999543 22232333 455999
Q ss_pred EEEEEeCCC---CCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 91 IVYVVDAAD---YDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 91 ~i~v~d~~~---~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+++|+|+++ .+++.....+..++..... ..++|+++|+||+|+..... .+++.+.+.. ..+++++||++
T Consensus 240 ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~t 313 (342)
T 1lnz_A 240 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAVT 313 (342)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSCC
T ss_pred EEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECCC
Confidence 999999998 7788888777777765432 35899999999999975421 2223333321 14689999999
Q ss_pred CCCHHHHHHHHHHHhhhc
Q 029978 166 STNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~~~ 183 (184)
+.|++++++.|.+.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 314 REGLRELLFEVANQLENT 331 (342)
T ss_dssp SSTTHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHHHHHhhC
Confidence 999999999999988753
No 137
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.90 E-value=3.4e-23 Score=153.35 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=107.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcc-cch--------HhHHHh
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP-RFR--------SMWERY 84 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~ 84 (184)
.+..+|+++|++|+|||||++++++..+. ..+..|.......+......+.+|||||+. ... ......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 34567999999999999999999976542 223334333334456778899999999987 322 223455
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC-cCCHhHHHHHcCCCCcCCCceeEEEeee
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE-ALSKEDLMEQMGLKSITDREVCCYMISC 163 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++.+|++++|+|+++ +.....+....+.. .+.|+++|+||+|+.. .....+..+.+.... ....++++||
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~---~~~~~i~iSA 156 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQM---NFLDIVPISA 156 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTS---CCSEEEECCT
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHhc---CcCceEEEEC
Confidence 778999999999976 33344444443332 4689999999999976 211222223222111 1236899999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 029978 164 KNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~~~ 181 (184)
+++.|++++++.+.+.+.
T Consensus 157 ~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999987654
No 138
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=7.1e-23 Score=158.91 Aligned_cols=159 Identities=19% Similarity=0.115 Sum_probs=105.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHh------------HHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM------------WER 83 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------------~~~ 83 (184)
.++|+++|++|||||||++++.+... ...+..|.......+...+..+.+|||+|..+.... ...
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~ 259 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD 259 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHH
Confidence 48999999999999999999997653 233333444444455566678999999997433211 134
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCCCcCCCceeEEEe
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMI 161 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++.+|++++++|+++..+.+.. .+...+.. .+.|+++|+||+|+.+... .++..+.+..........+++++
T Consensus 260 ~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT 334 (439)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEE
Confidence 56789999999999887665542 22333222 4689999999999975422 33333332221222234579999
Q ss_pred eeCCCCCHHHHHHHHHHHhhh
Q 029978 162 SCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
||++|.|++++++.+.+.+.+
T Consensus 335 SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 139
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.90 E-value=3.5e-23 Score=154.27 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=101.7
Q ss_pred CCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCC----------CCCChHHHHHHHHHHhcCCCC
Q 029978 50 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DYDNLPVSRSELHDLLSKPSL 119 (184)
Q Consensus 50 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~ 119 (184)
+|++.....++.+.+.+++|||+|++.++..|..++++++++|+|+|++ +..++.+...++..+......
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 3455555566677889999999999999999999999999999999998 667788888899888877666
Q ss_pred CCCcEEEEeeCCCccCc-----------------CCHhHHHH----H-------cCCCCcCC-----------CceeEEE
Q 029978 120 NGIPLLVLGNKIDKPEA-----------------LSKEDLME----Q-------MGLKSITD-----------REVCCYM 160 (184)
Q Consensus 120 ~~~piilv~nK~D~~~~-----------------~~~~~~~~----~-------~~~~~~~~-----------~~~~~~~ 160 (184)
.++|+++++||+|+... .+.++..+ . ..+..... +.+.+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 78999999999998642 11222222 1 11111112 4578899
Q ss_pred eeeCCCCCHHHHHHHHHHHhh
Q 029978 161 ISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
|||++..||+.+|+.+.+.+.
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il 327 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIM 327 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHH
Confidence 999999999999999988765
No 140
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.90 E-value=4.8e-23 Score=160.06 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=100.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhH--------HHhc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW--------ERYC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 85 (184)
+.+++|+++|++|+|||||+|++.+..+. .....|.......+...+..+.+|||||...+.... ..++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 45789999999999999999999975432 222333334334556677899999999976554332 2357
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+.+|++++|+|++++.+... ..++..+ . ..|+++|+||+|+.+..... . ... .....+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l-~-----~~piivV~NK~Dl~~~~~~~----~--~~~-~~~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV-K-----HRPLILVMNKIDLVEKQLIT----S--LEY-PENITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH-T-----TSCEEEEEECTTSSCGGGST----T--CCC-CTTCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc-c-----CCcEEEEEECCCCCcchhhH----H--HHH-hccCCcEEEEECCC
Confidence 88999999999998766543 2333333 2 36999999999997652211 1 111 11345799999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 029978 166 STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~~ 182 (184)
|.|++++++.|.+.+..
T Consensus 368 g~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 KQGIDSLETAILEIVQT 384 (462)
T ss_dssp TBSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988754
No 141
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.90 E-value=7.6e-23 Score=154.40 Aligned_cols=125 Identities=20% Similarity=0.306 Sum_probs=91.1
Q ss_pred EEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC----------CCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 029978 58 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------YDNLPVSRSELHDLLSKPSLNGIPLLVL 127 (184)
Q Consensus 58 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~piilv 127 (184)
.+...++.+.+|||+|++.++..+..++++++++|+|+|+++ ..++.+...++..+.......++|+|+|
T Consensus 195 ~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv 274 (362)
T 1zcb_A 195 DFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILF 274 (362)
T ss_dssp EEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEE
T ss_pred EeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEE
Confidence 345567899999999999999999999999999999999999 5578888889988887655578999999
Q ss_pred eeCCCccCc------------------CCHhHHHHHc-----CCCCcC-CCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 128 GNKIDKPEA------------------LSKEDLMEQM-----GLKSIT-DREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 128 ~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+||+|+... ...++..+.+ .+.... ...+.+++|||+++.||+++|+.+.+.+.+
T Consensus 275 ~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 275 LNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp EECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 999998631 3334443322 222211 345678999999999999999999887653
No 142
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=2.8e-23 Score=161.05 Aligned_cols=150 Identities=21% Similarity=0.227 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcc--------cchHhHHHhccCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP--------RFRSMWERYCRAV 88 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~~ 88 (184)
.+|+++|.+|||||||++++.+..+. ..++.|...........+..+.+|||||++ .+......+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999976543 223333344444555566789999999985 4566677888999
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCC
Q 029978 89 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|+.+..+.. ..++..++.. .++|+++|+||+|+..... + . .........+++++||++|.|
T Consensus 84 d~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~----~-~~~~~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA--N----I-YDFYSLGFGEPYPISGTHGLG 151 (436)
T ss_dssp SEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------C----C-CSSGGGSSCCCEECBTTTTBT
T ss_pred CEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh--h----H-HHHHHcCCCCeEEEeCcCCCC
Confidence 9999999998865543 3445555443 5789999999999865311 0 0 011111112589999999999
Q ss_pred HHHHHHHHHHHhh
Q 029978 169 IDTVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~~~ 181 (184)
++++++.+.+.+.
T Consensus 152 v~~L~~~i~~~l~ 164 (436)
T 2hjg_A 152 LGDLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHHHTGG
T ss_pred hHHHHHHHHHhcC
Confidence 9999999998875
No 143
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=2.8e-23 Score=162.55 Aligned_cols=160 Identities=18% Similarity=0.203 Sum_probs=109.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC-------CC--CCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG-------YS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA 87 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~-------~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 87 (184)
.+.++|+++|++++|||||+++|.+.. .. .....|+...+..+......+.+|||||++++.......+..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 346899999999999999999999765 22 223345555555566677899999999999998888999999
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCC--Cc-CCCceeEEEeeeC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK--SI-TDREVCCYMISCK 164 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~Sa~ 164 (184)
+|++++|+|+++...-+ ....+. ++.. .++|+++|+||+|+.+....++..+++... .. .....+++++||+
T Consensus 97 aD~~ilVvda~~g~~~q-t~e~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~ 171 (482)
T 1wb1_A 97 IDLALIVVDAKEGPKTQ-TGEHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 171 (482)
T ss_dssp CCEEEEEEETTTCSCHH-HHHHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred CCEEEEEEecCCCccHH-HHHHHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECc
Confidence 99999999998743212 222222 2222 368899999999997642222222222110 00 1114579999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 029978 165 NSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~~~ 181 (184)
+|.|+++|++.|.+.+.
T Consensus 172 ~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 172 TGFGVDELKNLIITTLN 188 (482)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhc
Confidence 99999999999998764
No 144
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.89 E-value=7.5e-23 Score=157.54 Aligned_cols=160 Identities=17% Similarity=0.213 Sum_probs=108.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC---CCCCCCCC--CccceeeEEee------------------C-----CEEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG---GYSEDMIP--TVGFNMRKVTK------------------G-----NVTIKL 68 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~---~~~~~~~~--t~~~~~~~~~~------------------~-----~~~~~~ 68 (184)
+..++|+++|++++|||||+++|.+. .+..+..+ |+...+..... + ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 45689999999999999999999843 22333222 55443332111 1 268999
Q ss_pred EeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH----hHHHH
Q 029978 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK----EDLME 144 (184)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~ 144 (184)
|||||+++|.......+..+|++++|+|+++..........+..+... ...|+++|+||+|+.+.... +++.+
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~ 164 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE 164 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHHH
Confidence 999999999888888888999999999999753222333333222211 12589999999999764321 22222
Q ss_pred HcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 145 QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
.+.. ......+++++||++|.|+++|++.|.+.+.
T Consensus 165 ~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 165 FIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 2221 1123568999999999999999999998654
No 145
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.89 E-value=4e-22 Score=158.65 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=109.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC--CCCC---------------CCCCCccceeeEEe-----eCCEEEEEEeCCCc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG--GYSE---------------DMIPTVGFNMRKVT-----KGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~--~~~~---------------~~~~t~~~~~~~~~-----~~~~~~~~~D~~g~ 74 (184)
++-.+|+++|+.++|||||+++++.. .... +...|+......+. ...+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 44578999999999999999999842 1110 11123322222332 22488999999999
Q ss_pred ccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCC
Q 029978 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 154 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
++|...+...++.+|++++|+|+++....+....|..... .++|+++|+||+|+.... .++..+++.... ...
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l-g~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL-GLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS-CCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC-HHHHHHHHHHhh-CCC
Confidence 9999989999999999999999999877776655544332 468999999999997653 333333322111 111
Q ss_pred ceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 155 EVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
..+++++||++|.|++++++.+.+.+..
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 2248999999999999999999987753
No 146
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.89 E-value=3e-22 Score=157.91 Aligned_cols=115 Identities=21% Similarity=0.188 Sum_probs=89.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC-----------------C-CC------CCCCCCccceeeEEeeCCEEEEEEeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG-----------------G-YS------EDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~-----------------~-~~------~~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+..+|+|+|++|+|||||+++|+.. . +. .....|+......+...++.+++||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 45689999999999999999999611 0 00 012335555566677889999999999
Q ss_pred CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
|++++......+++.+|++++|+|+++....+... .|..+.. .++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCccc
Confidence 99999999999999999999999999876655543 3333332 46899999999999654
No 147
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.89 E-value=3e-23 Score=159.37 Aligned_cols=153 Identities=18% Similarity=0.164 Sum_probs=106.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCC-EEEEEEeCCCcccchHh-------HHHhc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRFRSM-------WERYC 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~-------~~~~~ 85 (184)
...++|+++|++|+|||||++++++..+. .....|.......+.... ..+.+|||||++++... ...++
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 45689999999999999999999977652 233344454555555444 38999999998765432 45678
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCC
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+.+|++++|+|+.. ......++..+... ++|+++|+||+|+...... +..+.+... ..++++++||++
T Consensus 112 ~~aD~vllVvD~~~---~~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~~~----~g~~v~~vSAkt 179 (423)
T 3qq5_A 112 YRADCGILVTDSAP---TPYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYESR----YEAKVLLVSALQ 179 (423)
T ss_dssp TSCSEEEEECSSSC---CHHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSSCC----TTCCCCCCSSCC
T ss_pred hcCCEEEEEEeCCC---hHHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHHHH----cCCCEEEEECCC
Confidence 89999999999832 23334444444433 7899999999999876543 333333321 234799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 029978 166 STNIDTVIDWLVKHSK 181 (184)
Q Consensus 166 ~~~v~~l~~~i~~~~~ 181 (184)
|.|++++++.|.+.+.
T Consensus 180 g~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 180 KKGFDDIGKTISEILP 195 (423)
T ss_dssp TTSTTTHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999999874
No 148
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.89 E-value=6.9e-22 Score=157.50 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=106.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCC--CC-----C----------CCCCCccceeeEEee-----CCEEEEEEeCCCcc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGG--YS-----E----------DMIPTVGFNMRKVTK-----GNVTIKLWDLGGQP 75 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~--~~-----~----------~~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~ 75 (184)
+-.+|+|+|+.++|||||+++++... .. . +...|+......+.+ ..+.+++|||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45789999999999999999998521 11 0 111222222223322 24889999999999
Q ss_pred cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCCCCcC
Q 029978 76 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLKSIT 152 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~ 152 (184)
++...+...++.+|++++|+|+++....+....|..... .++|+++|+||+|+.+... .+++.+.++..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID--- 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC---
Confidence 999999999999999999999998877777655544432 3689999999999976532 12333333322
Q ss_pred CCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 153 DREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
..+++++||++|.|++++++.+.+.+..
T Consensus 155 --~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 155 --ATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp --CTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred --cceEEEeecccCCCchhHHHHHhhcCCC
Confidence 1248999999999999999999988753
No 149
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2e-23 Score=144.98 Aligned_cols=126 Identities=25% Similarity=0.354 Sum_probs=92.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccC----C
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA----V 88 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~ 88 (184)
..+.++|+++|++|||||||++++.+..+.. ...++... +.....+.+|||||++.+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 3567899999999999999999999876544 22222222 1245679999999998887666666655 8
Q ss_pred CEEEEEEeCC-CCCChHHHHHHHHHHhcCC---CCCCCcEEEEeeCCCccCcCCHhHHHHHc
Q 029978 89 SAIVYVVDAA-DYDNLPVSRSELHDLLSKP---SLNGIPLLVLGNKIDKPEALSKEDLMEQM 146 (184)
Q Consensus 89 ~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~~~~~~~~~~~ 146 (184)
|++++|+|++ +.+++.....++..+.... ...++|+++|+||+|+.+....+++.+.+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999999 7777888777777665431 22579999999999998876666555544
No 150
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.89 E-value=4.1e-23 Score=161.91 Aligned_cols=154 Identities=14% Similarity=0.076 Sum_probs=102.8
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCC--C-------------------------------CCCCCCCccceeeEEeeC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGG--Y-------------------------------SEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~ 62 (184)
.+..++|+++|++++|||||+++|++.. + ......|+......++..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 3667999999999999999999997431 0 111233555555667777
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChH-----HHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP-----VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 137 (184)
...+.+|||||++++.......++.+|++++|+|+++...+. ........+.... ...|+++|+||+|+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence 889999999999999999999999999999999999864321 1122222222221 124699999999997632
Q ss_pred --CHhHHHHHcC----CCCcCCCceeEEEeeeCCCCCHHH
Q 029978 138 --SKEDLMEQMG----LKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 138 --~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
..+++.+.+. ........++++++||++|.|+++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1122222211 001112356899999999999985
No 151
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.88 E-value=1.7e-22 Score=153.15 Aligned_cols=148 Identities=11% Similarity=0.093 Sum_probs=109.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
+|+++|++++|||||+++|+ +...|+......+...+..+.+|||||+++|.......++.+|++++|+| +.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~- 94 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ- 94 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-
Confidence 89999999999999999997 45566666667777777899999999999998888888899999999999 43
Q ss_pred CChHHHHHHHHHHhcCCCCCCCcE-EEEee-CCCccCcCCHhHHHHHcC--CCCcCCCceeEEE--eeeCC---CCCHHH
Q 029978 101 DNLPVSRSELHDLLSKPSLNGIPL-LVLGN-KIDKPEALSKEDLMEQMG--LKSITDREVCCYM--ISCKN---STNIDT 171 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pi-ilv~n-K~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~Sa~~---~~~v~~ 171 (184)
......+.++..+.. .++|. ++|+| |+|+ +....++..+++. +.......+++++ +||++ +.|+++
T Consensus 95 g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~ 169 (370)
T 2elf_A 95 GLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDE 169 (370)
T ss_dssp CCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHH
T ss_pred CCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHH
Confidence 334444444443332 35777 89999 9999 4322222212211 1111123468999 99999 999999
Q ss_pred HHHHHHHHhh
Q 029978 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
+++.|.+.+.
T Consensus 170 L~~~l~~~~~ 179 (370)
T 2elf_A 170 LKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcc
Confidence 9999988764
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=1.4e-22 Score=157.07 Aligned_cols=154 Identities=19% Similarity=0.180 Sum_probs=103.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--C-----------------------------C--CCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--Y-----------------------------S--EDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--~-----------------------------~--~~~~~t~~~~~~~~~~~~ 63 (184)
+..++|+++|++++|||||+++|+... . . .+...|+......+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 456999999999999999999996321 0 0 112234444555566777
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCC---hH---HHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCc
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN---LP---VSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEA 136 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~ 136 (184)
..+.+|||||+++|.......++.+|++++|+|+++... |. ..+..+... .. .++| +++|+||+|+...
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~---~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT---AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH---cCCCeEEEEeecCCCccc
Confidence 899999999999999988999999999999999987532 11 122222222 11 3567 9999999999642
Q ss_pred CC----HhHHHHHcC----C-CCcCCCceeEEEeeeCCCCCHHHHHH
Q 029978 137 LS----KEDLMEQMG----L-KSITDREVCCYMISCKNSTNIDTVID 174 (184)
Q Consensus 137 ~~----~~~~~~~~~----~-~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
.. .+++.+++. . .......++++++||++|.|++++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 11 122222211 1 11111256899999999999999654
No 153
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.88 E-value=6.9e-24 Score=166.78 Aligned_cols=160 Identities=17% Similarity=0.178 Sum_probs=113.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--CccceeeEEee-CCEEEEEEeCCCcccchHhHHHhccCCCEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIP--TVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~--t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
++..+|+++|++++|||||+++|.+..+.....+ |.......+.. ....+.+|||||++.|...+...++.+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4567899999999999999999986554333333 33333333322 34579999999999999988899999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC--HhHHHHHcCCC-CcCCCceeEEEeeeCCCCCHH
Q 029978 94 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLK-SITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
|+|+++....+.. ..+..+.. .++|+++|+||+|+.+... ..+.....+.. ......++++++||++|.|++
T Consensus 82 VVDa~dg~~~qt~-e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQTV-ESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHHHH-HHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHHHH-HHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 9999986554433 23333322 4689999999999975321 12222233221 122235689999999999999
Q ss_pred HHHHHHHHHhh
Q 029978 171 TVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
++++.+...+.
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999988764
No 154
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=1.2e-21 Score=151.70 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=103.4
Q ss_pred HHHhhccCCceEEEEEcCCCCChHHHHHHHHcCC---CCCC--------------------------------CCCCccc
Q 029978 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGG---YSED--------------------------------MIPTVGF 54 (184)
Q Consensus 10 ~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~---~~~~--------------------------------~~~t~~~ 54 (184)
++.+...+..++|+++|++++|||||+++|++.. +... ...|+..
T Consensus 15 ~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~ 94 (434)
T 1zun_B 15 YLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDV 94 (434)
T ss_dssp -CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCC
T ss_pred HHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEe
Confidence 3333334456999999999999999999998543 1100 1123333
Q ss_pred eeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC-cEEEEeeCCCc
Q 029978 55 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI-PLLVLGNKIDK 133 (184)
Q Consensus 55 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-piilv~nK~D~ 133 (184)
.+..+......+.+|||||+++|...+...+..+|++++|+|+++....+ ...++..+.. .+. |+++|+||+|+
T Consensus 95 ~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~----~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 95 AYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASL----LGIKHIVVAINKMDL 169 (434)
T ss_dssp EEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEEECTTT
T ss_pred eeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEEcCcC
Confidence 33445567789999999999999888888899999999999999865322 2333332222 134 69999999999
Q ss_pred cCcCC--HhHHHHHcC----CCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 134 PEALS--KEDLMEQMG----LKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 134 ~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
.+... .+++.+++. ........++++++||++|.|++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 76321 111222111 1110123468999999999999873
No 155
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=4.4e-22 Score=144.58 Aligned_cols=160 Identities=14% Similarity=0.153 Sum_probs=104.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC-CCCCCCC---CccceeeEEeeCCEEEEEEeCCCcccch-----------HhH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG-YSEDMIP---TVGFNMRKVTKGNVTIKLWDLGGQPRFR-----------SMW 81 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~-~~~~~~~---t~~~~~~~~~~~~~~~~~~D~~g~~~~~-----------~~~ 81 (184)
...++|+++|++|+|||||++++++.. +.....+ |...........+..+.+|||||+..+. ...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 456999999999999999999999766 4444333 3334444566778899999999976542 223
Q ss_pred HHhccCCCEEEEEEeCCCCCChH-HHHHHHHHHhcCCCCCCCcEEEEee-CCCccCcCCHhH------------HHHHcC
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLP-VSRSELHDLLSKPSLNGIPLLVLGN-KIDKPEALSKED------------LMEQMG 147 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~piilv~n-K~D~~~~~~~~~------------~~~~~~ 147 (184)
..+++.+|++++|+|+++..... ....++..+... ....|.++|+| |+|+.+. ...+ ..+.++
T Consensus 100 ~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTT
T ss_pred HhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhC
Confidence 34678899999999998632211 111222222211 11457777777 9999753 3333 233332
Q ss_pred CCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 148 LKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
.... .+..+++||+++.|++++++.|.+.+.+
T Consensus 177 ~~~~---~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 177 GRIC---AFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TCEE---ECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEE---EecCcccccccHHHHHHHHHHHHHHHHh
Confidence 2110 0111789999999999999999998765
No 156
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.88 E-value=4.8e-22 Score=150.39 Aligned_cols=157 Identities=22% Similarity=0.260 Sum_probs=102.6
Q ss_pred CceE-EEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCCEEEEEEeCCCccc---------chHhHHHhc
Q 029978 18 QEME-LSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR---------FRSMWERYC 85 (184)
Q Consensus 18 ~~~~-i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~ 85 (184)
.+++ |+++|++|+|||||++++.+..+. ....+|.+.....+...+..+.+|||+|... +... ...+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~ 255 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVT-LSEA 255 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHH-HHGG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHH-HHHH
Confidence 3455 899999999999999999987653 2345565555556666668899999999621 2222 2346
Q ss_pred cCCCEEEEEEeCCCCC--ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH---HH----HHcCCCCcCCCce
Q 029978 86 RAVSAIVYVVDAADYD--NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED---LM----EQMGLKSITDREV 156 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~---~~----~~~~~~~~~~~~~ 156 (184)
..+|.+++|+|++++. ...... .+..++......+.|+++|+||+|+.+.. ..+ .. ..+. ...+
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~-----~~~~ 328 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY-----SPIF 328 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC-----SCEE
T ss_pred HhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc-----CCCC
Confidence 8899999999998764 222222 22233322233578999999999997643 222 11 1221 1234
Q ss_pred eEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 157 CCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+++++||+++.|++++++.|.+.+..
T Consensus 329 ~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 329 DVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 68999999999999999999987754
No 157
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=1.6e-22 Score=157.64 Aligned_cols=151 Identities=21% Similarity=0.236 Sum_probs=103.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCC--------cccchHhHHHhccC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGG--------QPRFRSMWERYCRA 87 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~~~~~ 87 (184)
..+|+++|.+|||||||++++.+..+. ..+..|..............+.+||||| ++.+......+++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 468999999999999999999976543 2223333344445556677899999999 66777788888999
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|..+ ++.....++..++.. .++|+++|+||+|+.+... +. .. .........+++||++|.
T Consensus 103 ad~il~VvD~~~--~~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~--~~----~e-~~~lg~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 103 ADVIIFMVNGRE--GVTAADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NI----YD-FYSLGFGEPYPISGTHGL 170 (456)
T ss_dssp CSEEEEEEESSS--CSCHHHHHHHHHHTT---CCSCEEEEEECC---------------CC-SGGGSSSSEEECCTTTCT
T ss_pred CCEEEEEEeCCC--CCChHHHHHHHHHHH---cCCCEEEEEECccchhhhh--hH----HH-HHHcCCCceEEeeccccc
Confidence 999999999876 344555566666554 5799999999999864311 11 11 111111236799999999
Q ss_pred CHHHHHHHHHHHhh
Q 029978 168 NIDTVIDWLVKHSK 181 (184)
Q Consensus 168 ~v~~l~~~i~~~~~ 181 (184)
|++++++.+.+.+.
T Consensus 171 gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 171 GLGDLLDAVAEHFK 184 (456)
T ss_dssp THHHHHHHHHTTGG
T ss_pred chHHHHHHHHhhcc
Confidence 99999999988764
No 158
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.87 E-value=5.2e-22 Score=152.63 Aligned_cols=160 Identities=17% Similarity=0.138 Sum_probs=111.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC--------CCCC-----------CCCCCccceeeEEeeCCEEEEEEeCCCcccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG--------GYSE-----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~--------~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (184)
+..++|+++|++++|||||+++|.+. .+.. ....|+......++.....+.+|||||+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45699999999999999999999862 1111 1223444444456666789999999999999
Q ss_pred hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCC-Hh----HHHHHcCCCCc
Q 029978 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALS-KE----DLMEQMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~~----~~~~~~~~~~~ 151 (184)
.......++.+|++++|+|+++.... ....++..+.. .++| +++|+||+|+.+... .+ ++.+.+.....
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 98888999999999999999886543 33444443332 3678 899999999975211 11 11111111111
Q ss_pred CCCceeEEEeeeCCCCC------------------HHHHHHHHHHHhh
Q 029978 152 TDREVCCYMISCKNSTN------------------IDTVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~------------------v~~l~~~i~~~~~ 181 (184)
.....+++++||++|.| +++|++.+.+.+.
T Consensus 164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 11245799999999987 8888888887654
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.87 E-value=3.5e-22 Score=153.16 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=109.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC-------CCCC-----------CCCCCccceeeEEeeCCEEEEEEeCCCcccchH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG-------GYSE-----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~-------~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
+.++|+++|++++|||||+++|.+. .+.. ....|+......+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 4689999999999999999999863 1110 122344444444556678999999999999988
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCC-H----hHHHHHcCCCCcCC
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALS-K----EDLMEQMGLKSITD 153 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~----~~~~~~~~~~~~~~ 153 (184)
.....++.+|++++|+|+++....+. ...+..+.. .++| +++|+||+|+.+... . +++.+.+.......
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 88889999999999999998654332 333333322 3678 789999999975211 1 11212211111111
Q ss_pred CceeEEEeeeCCCCC----------HHHHHHHHHHHhh
Q 029978 154 REVCCYMISCKNSTN----------IDTVIDWLVKHSK 181 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~----------v~~l~~~i~~~~~ 181 (184)
..++++++||++|.| +++|++.+.+.+.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 245799999999765 8999999988664
No 160
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.87 E-value=2.3e-21 Score=143.37 Aligned_cols=172 Identities=16% Similarity=0.162 Sum_probs=108.5
Q ss_pred hHHHHHHHHHhhcc---CCceEEEEEcCCCCChHHHHHHHHcCCCCCC------CCCC----------------------
Q 029978 3 LWEAFLNWLRSLFF---KQEMELSLIGLQNAGKTSLVNVIATGGYSED------MIPT---------------------- 51 (184)
Q Consensus 3 ~~~~~~~~~~~~~~---~~~~~i~iiG~~g~GKStli~~l~~~~~~~~------~~~t---------------------- 51 (184)
+++++.+.++.... ....+|+++|.+|+|||||++++++..+.+. ..|+
T Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~ 86 (299)
T 2aka_B 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF 86 (299)
T ss_dssp HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCccc
Confidence 45667766665433 2457999999999999999999998776321 1121
Q ss_pred ccce-------------------------eeEEeeC-CEEEEEEeCCCcc-------------cchHhHHHhccCCCEEE
Q 029978 52 VGFN-------------------------MRKVTKG-NVTIKLWDLGGQP-------------RFRSMWERYCRAVSAIV 92 (184)
Q Consensus 52 ~~~~-------------------------~~~~~~~-~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i 92 (184)
.... ...+... ...+.+|||||.. .+......+++.++.++
T Consensus 87 tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 166 (299)
T 2aka_B 87 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 166 (299)
T ss_dssp CCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEE
Confidence 0000 0001111 3679999999963 34456677888888766
Q ss_pred -EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 -YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 -~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++.........+...+ . ..+.|+++|+||+|+.+... ..+..+. ..........+++++||++|.|++
T Consensus 167 l~v~d~~~~~~~~~~~~~~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~SA~~~~gi~ 241 (299)
T 2aka_B 167 LAVSPANSDLANSDALKIAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKK 241 (299)
T ss_dssp EEEEESSSCGGGCHHHHHHHHH-C---TTCSSEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCCBCTTSCB
T ss_pred EEEecCCcchhhhHHHHHHHHh-C---CCCCeEEEEEEccccCCCCchHHHHHhC-CcCcCCCCcEEEECCChhhccccc
Confidence 689998743333322233322 2 24789999999999976432 2222221 111111123578999999999999
Q ss_pred HHHHHHHHH
Q 029978 171 TVIDWLVKH 179 (184)
Q Consensus 171 ~l~~~i~~~ 179 (184)
++++.+.+.
T Consensus 242 ~l~~~l~~~ 250 (299)
T 2aka_B 242 DITAALAAE 250 (299)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 999998753
No 161
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.87 E-value=2.4e-22 Score=155.73 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=99.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC--CCCC-------------------------------CCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG--GYSE-------------------------------DMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|++++|||||+++|+.. .+.. ....|+......++...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999853 2221 23345555555677778
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHH-------HHHHHHHhcCCCCCCC-cEEEEeeCCCccC
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-------RSELHDLLSKPSLNGI-PLLVLGNKIDKPE 135 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~-piilv~nK~D~~~ 135 (184)
..+.+|||||+++|...+..+++.+|++++|+|+++ .+|... +..+..... .++ |+++|+||+|+.+
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~----~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT----MGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH----TTCTTCEEEEECGGGSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH----cCCCeEEEEEEcccCCC
Confidence 899999999999999989999999999999999998 444432 222221111 233 6899999999976
Q ss_pred cC-C-------HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 136 AL-S-------KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 136 ~~-~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
.. . .+++.+.+.........++++++||++|.|+.++
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 31 1 1122222111111112468999999999999743
No 162
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.86 E-value=2.1e-22 Score=151.45 Aligned_cols=121 Identities=17% Similarity=0.274 Sum_probs=90.9
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCC----------CCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 131 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 131 (184)
..+.+.+|||+|++.++..+..++++++++|+|||++ +.+++.+...++..+.......++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4578999999999999999999999999999999998 677888888899888876555789999999999
Q ss_pred CccCcCC-----------------------HhHHHHHcCC--------C--C-cCCCceeEEEeeeCCCCCHHHHHHHHH
Q 029978 132 DKPEALS-----------------------KEDLMEQMGL--------K--S-ITDREVCCYMISCKNSTNIDTVIDWLV 177 (184)
Q Consensus 132 D~~~~~~-----------------------~~~~~~~~~~--------~--~-~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
|+..... .++..+.+.. . . .......+++|||+++.||+++|+.+.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9853210 1111111110 0 0 012345678999999999999999998
Q ss_pred HHhhh
Q 029978 178 KHSKS 182 (184)
Q Consensus 178 ~~~~~ 182 (184)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 163
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.86 E-value=6.5e-21 Score=150.40 Aligned_cols=116 Identities=21% Similarity=0.246 Sum_probs=84.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--C------C----------------CCCCCCccceeeEEeeCCEEEEEEeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--Y------S----------------EDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--~------~----------------~~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+..+|+++|++|+|||||+++++... . . .....|+......+....+.+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 567899999999999999999998521 1 0 011223333444567788999999999
Q ss_pred CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC
Q 029978 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 137 (184)
|++++......+++.+|++++|+|+++....+ ....+. ... ..++|+++|+||+|+....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~-~~~---~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLME-VTR---LRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHH-HHT---TTTCCEEEEEECTTSCCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHH-HHH---HcCCCEEEEEcCcCCcccc
Confidence 99999988889999999999999998754322 122222 222 2578999999999997653
No 164
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.86 E-value=8e-21 Score=136.95 Aligned_cols=165 Identities=12% Similarity=0.086 Sum_probs=100.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCC----CCCccceeeEEeeCCEEEEEEeCCCc--------ccchHhHHHh
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDM----IPTVGFNMRKVTKGNVTIKLWDLGGQ--------PRFRSMWERY 84 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~ 84 (184)
...++|+++|.+|+|||||++++++....... ..|..............+.+|||||. +.+.......
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 45799999999999999999999977654322 23444445556677889999999996 3333333333
Q ss_pred ----ccCCCEEEEEEeCCCCCChH-HHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcC---CC-CcCCCc
Q 029978 85 ----CRAVSAIVYVVDAADYDNLP-VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG---LK-SITDRE 155 (184)
Q Consensus 85 ----~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---~~-~~~~~~ 155 (184)
.+.+|++++|+|++...... ....++..... ....+.|+++|+||+|+.+. ..++...... +. ......
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG-EDVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC-hhhhccEEEEEEchHhcCCC-CHHHHHhhcccHHHHHHHHHcC
Confidence 38999999999998532111 11122222221 11136899999999999763 2222221110 00 000011
Q ss_pred eeEEEeeeCC-----CCCHHHHHHHHHHHhhhc
Q 029978 156 VCCYMISCKN-----STNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 156 ~~~~~~Sa~~-----~~~v~~l~~~i~~~~~~~ 183 (184)
..++.+++.. +.|+++|++.|.+.+.++
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 1244444333 689999999999988753
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.86 E-value=1e-22 Score=159.03 Aligned_cols=157 Identities=25% Similarity=0.280 Sum_probs=107.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCC--CCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEE
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
++..+|+++|++++|||||++++.+..+.... ..|.......+...+..+.+|||||++.|...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 45678999999999999999999865443222 2233333333444556799999999999988888888999999999
Q ss_pred EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCC----CcCCCceeEEEeeeCCCCCHH
Q 029978 95 VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK----SITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+++...-+.. ..+..... .++|+++|+||+|+..... +++...+... ......++++++||++|.|++
T Consensus 82 Vda~~g~~~qT~-e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMPQTI-EAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCTTTH-HHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccHHHH-HHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 999874322222 22222221 4689999999999975321 2222222111 111124689999999999999
Q ss_pred HHHHHHHHH
Q 029978 171 TVIDWLVKH 179 (184)
Q Consensus 171 ~l~~~i~~~ 179 (184)
++++.+...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998753
No 166
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=4.8e-21 Score=137.49 Aligned_cols=165 Identities=12% Similarity=0.063 Sum_probs=98.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCC----CCccceeeEEeeCCEEEEEEeCCCcc-----------cchHh
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMI----PTVGFNMRKVTKGNVTIKLWDLGGQP-----------RFRSM 80 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~-----------~~~~~ 80 (184)
....++|+++|++|+|||||++++++..+..... .|..............+.+|||||.. .+...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999999877654432 23334444566777899999999932 33444
Q ss_pred HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccCcCCHhHHHHHcCC--C-CcCCCce
Q 029978 81 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEALSKEDLMEQMGL--K-SITDREV 156 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~--~-~~~~~~~ 156 (184)
.....+.+|++++|+|++..... ...++..+..... ....|+++|+||+|+......++....... . .......
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS
T ss_pred HHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence 55566788999999999865542 2223332221110 123699999999998765332211111000 0 0000011
Q ss_pred eEEEeeeCC-----CCCHHHHHHHHHHHhhh
Q 029978 157 CCYMISCKN-----STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 157 ~~~~~Sa~~-----~~~v~~l~~~i~~~~~~ 182 (184)
.++.+++.. ..++.+|++.+.+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 184 RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 255555553 36899999999887754
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.2e-22 Score=158.60 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=103.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCC---------------------------------CCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSE---------------------------------DMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~---------------------------------~~~~t~~~~~~~~~~~~ 63 (184)
+..++|+++|++|+|||||+++|++..... ..+.|+......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 446899999999999999999998542211 12335555556677778
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCC---CCh--HHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY---DNL--PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~--~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
..+.+|||||++++.......++.+|++++|+|+++. .++ .........+.... ...|+++|+||+|+.+...
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhH
Confidence 8999999999999999999999999999999999862 111 11111222222221 1245999999999976211
Q ss_pred --HhHHHHHcC----CCCcCCCceeEEEeeeCCCCCHHHH
Q 029978 139 --KEDLMEQMG----LKSITDREVCCYMISCKNSTNIDTV 172 (184)
Q Consensus 139 --~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
.+++.+.+. ........++++++||++|.|++++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 112222111 0011112468999999999999865
No 168
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.85 E-value=2.3e-21 Score=147.56 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=94.7
Q ss_pred eeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCC----------CCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 029978 60 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------YDNLPVSRSELHDLLSKPSLNGIPLLVLGN 129 (184)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~piilv~n 129 (184)
...++.+.+|||+|++.++..+..++++++++|+|||+++ ..++.....|+..+.......++|+++|+|
T Consensus 213 ~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgN 292 (402)
T 1azs_C 213 QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLN 292 (402)
T ss_dssp EETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEE
T ss_pred ecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 3356789999999999999999999999999999999999 788999999999988775567899999999
Q ss_pred CCCccCcCC--------------------------------HhHHHHHc-----CC---CCcCCCceeEEEeeeCCCCCH
Q 029978 130 KIDKPEALS--------------------------------KEDLMEQM-----GL---KSITDREVCCYMISCKNSTNI 169 (184)
Q Consensus 130 K~D~~~~~~--------------------------------~~~~~~~~-----~~---~~~~~~~~~~~~~Sa~~~~~v 169 (184)
|+|+..... .++....+ .. .......+.+++|||+++.||
T Consensus 293 K~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV 372 (402)
T 1azs_C 293 KQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI 372 (402)
T ss_dssp CHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHH
T ss_pred ChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCH
Confidence 999843200 11111110 00 001113467889999999999
Q ss_pred HHHHHHHHHHhhh
Q 029978 170 DTVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++|+.+.+.+.+
T Consensus 373 ~~vF~~v~~~I~~ 385 (402)
T 1azs_C 373 RRVFNDCRDIIQR 385 (402)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 169
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.85 E-value=3.5e-21 Score=153.56 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=106.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCCC----CCCCCccceeeEEe----------------eCCEEEEEEeCCCcccc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYSE----DMIPTVGFNMRKVT----------------KGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~~----~~~~t~~~~~~~~~----------------~~~~~~~~~D~~g~~~~ 77 (184)
+..+|+++|++++|||||++++++..+.. ...++++......+ .....+.+|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 46789999999999999999998644322 12233333322211 11236999999999999
Q ss_pred hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH--------------h---
Q 029978 78 RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--------------E--- 140 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--------------~--- 140 (184)
...+.+.++.+|++++|+|+++.-.-+.. ..+..+.. .++|+++|+||+|+.+.... +
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~-e~l~~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~ 158 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQ-EALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHH-HHHHHHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHHH
Confidence 88888888999999999999984322222 22222222 47899999999999642110 0
Q ss_pred --------HHHHHc---CCCC-------cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 141 --------DLMEQM---GLKS-------ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 141 --------~~~~~~---~~~~-------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
++.+.+ ++.. .....++++++||++|.|+++|+++|...+.
T Consensus 159 ~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 111111 1110 0134568999999999999999999987664
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.85 E-value=4.5e-22 Score=155.30 Aligned_cols=154 Identities=21% Similarity=0.261 Sum_probs=90.2
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc--CCCC-------------------------------CCCCCCccceeeEEe
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT--GGYS-------------------------------EDMIPTVGFNMRKVT 60 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~--~~~~-------------------------------~~~~~t~~~~~~~~~ 60 (184)
...+..++|+++|++++|||||+++|+. +.+. .....|+......+.
T Consensus 38 ~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~ 117 (467)
T 1r5b_A 38 MYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE 117 (467)
T ss_dssp HSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE
T ss_pred hcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe
Confidence 3446679999999999999999999974 2211 123445555555566
Q ss_pred eCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC---ChH---HHHHHHHHHhcCCCCCCCc-EEEEeeCCCc
Q 029978 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NLP---VSRSELHDLLSKPSLNGIP-LLVLGNKIDK 133 (184)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~D~ 133 (184)
..+..+.+|||||+++|...+...++.+|++++|+|+++.. +|. ..+..+... .. .++| +++|+||+|+
T Consensus 118 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~---~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 118 TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RT---QGINHLVVVINKMDE 193 (467)
T ss_dssp CSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HH---TTCSSEEEEEECTTS
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HH---cCCCEEEEEEECccC
Confidence 67789999999999999988888899999999999998751 222 112222222 11 3577 9999999999
Q ss_pred cCcC-CH---h----HHHH---Hc-CCCCcCCCceeEEEeeeCCCCCHHHHH
Q 029978 134 PEAL-SK---E----DLME---QM-GLKSITDREVCCYMISCKNSTNIDTVI 173 (184)
Q Consensus 134 ~~~~-~~---~----~~~~---~~-~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
.... +. + ++.+ .. +... ...++++++||++|.|+++++
T Consensus 194 ~~~~~~~~~~~~i~~e~~~~l~~~~g~~~--~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 194 PSVQWSEERYKECVDKLSMFLRRVAGYNS--KTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHHHHCCCH--HHHEEEEECBTTTTBTTSSCC
T ss_pred CCccccHHHHHHHHHHHHHHHHHhcCCCc--cCCceEEeccccccccccccc
Confidence 6421 11 1 1211 11 2110 125689999999999998754
No 171
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.84 E-value=4.1e-21 Score=140.54 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=85.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCC-CCCC-------CCCccceeeEEe----eCCEEEEEEeCCCccc-------ch
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGY-SEDM-------IPTVGFNMRKVT----KGNVTIKLWDLGGQPR-------FR 78 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~-~~~~-------~~t~~~~~~~~~----~~~~~~~~~D~~g~~~-------~~ 78 (184)
..++|+++|.+|+|||||+|++++... ...+ .+|++....... ...+.+.+|||||... +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 468999999999999999999875443 3333 455554444322 2336899999999732 22
Q ss_pred HhH-------HHhcc-------------CCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 79 SMW-------ERYCR-------------AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 79 ~~~-------~~~~~-------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
... ..++. .+|+++++++.+... +......+...+.. ++|+++|+||+|+.....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence 222 23332 267899999776532 23333333333322 699999999999965432
Q ss_pred HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
.....+.+.. ......++++++||+++.|++++++.|.+.+
T Consensus 162 ~~~~~~~i~~-~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 162 CQQFKKQIMK-EIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHH-HHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHH-HHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 2222221111 0111234588899999999999999998764
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.84 E-value=1.6e-20 Score=156.71 Aligned_cols=160 Identities=17% Similarity=0.118 Sum_probs=108.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC-------CCC-----------CCCCCCccceeeEEeeCCEEEEEEeCCCcccch
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG-------GYS-----------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~-------~~~-----------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (184)
+..++|+++|++++|||||+++|.+. .+. .....|+......++.....+.+|||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 45699999999999999999999853 110 112223333444566677899999999999999
Q ss_pred HhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCcCC-H----hHHHHHcCCCCcC
Q 029978 79 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALS-K----EDLMEQMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~----~~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+++....+ ...++..+.. .++| +|+|+||+|+.+... . +++.+.+......
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 88888999999999999999865433 3334333322 3578 789999999975211 1 1111111111111
Q ss_pred CCceeEEEeeeCCC--------CCHHHHHHHHHHHhh
Q 029978 153 DREVCCYMISCKNS--------TNIDTVIDWLVKHSK 181 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~--------~~v~~l~~~i~~~~~ 181 (184)
...++++++||++| .|+++|++.|.+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 23467999999999 468999999987654
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.84 E-value=1.1e-20 Score=132.81 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=98.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee--EEeeCCEEEEEEeCCCccc----------chHhH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR--KVTKGNVTIKLWDLGGQPR----------FRSMW 81 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~----------~~~~~ 81 (184)
+...++.+|+++|++|+|||||++++.+..+.....++.+.... .+...+ .+.+|||||... +....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 56678899999999999999999999876643333444443221 111112 578999999742 22223
Q ss_pred HHhc---cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH----hHHHHHcCCCCcCCC
Q 029978 82 ERYC---RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK----EDLMEQMGLKSITDR 154 (184)
Q Consensus 82 ~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~ 154 (184)
..++ +.++++++++|++...+... .....++.. .+.|+++|+||+|+.+.... ..+...+. ....
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~---~~~~ 171 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVL---AFNG 171 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG---GGCS
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHH---hcCC
Confidence 3333 56889999999988665432 112222221 46899999999998654211 11222221 1112
Q ss_pred ceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 155 EVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
...++++||+++.|++++++.+.+.+.+
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 4568899999999999999999887653
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.84 E-value=1.7e-21 Score=151.76 Aligned_cols=151 Identities=15% Similarity=0.170 Sum_probs=102.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC--CCCC-------------------------------CCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG--GYSE-------------------------------DMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~ 63 (184)
+..++|+++|++++|||||+++|++. .+.. ....|+......++...
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 35689999999999999999999853 2211 13456666666677788
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC---ChH---HHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCc
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NLP---VSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEA 136 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~ 136 (184)
..+.+|||||+++|.......+..+|++++|+|+++.. +|. .....+.. ... .++| +++|+||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~-~~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALL-AFT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHH-HHH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHH-HHH---cCCCeEEEEEEccccccC
Confidence 99999999999999998899999999999999998631 111 22222222 221 3465 9999999999742
Q ss_pred C--CHhHHHHHcC----CCCcCCCceeEEEeeeCCCCCHHH
Q 029978 137 L--SKEDLMEQMG----LKSITDREVCCYMISCKNSTNIDT 171 (184)
Q Consensus 137 ~--~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
. ..+++.+++. ........++++++||++|.|+++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 1 1112222111 000111235799999999999874
No 175
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.84 E-value=9e-20 Score=148.13 Aligned_cols=115 Identities=20% Similarity=0.199 Sum_probs=86.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc--CCC------C------------CCCCCCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT--GGY------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~--~~~------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
.+..+|+|+|++|+|||||+++++. +.+ . .....|+......+....+.+++|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 4568999999999999999999983 111 0 0334555555666777889999999999999
Q ss_pred chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 77 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
+...+..+++.+|++++|+|+++....+....| ..+.. .++|+++|+||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCcccC
Confidence 999999999999999999999988776655433 33332 37899999999999764
No 176
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.84 E-value=6.7e-23 Score=163.72 Aligned_cols=160 Identities=19% Similarity=0.161 Sum_probs=88.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC--C-----------------------------C--CCCCCCccceeeEEeeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG--Y-----------------------------S--EDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~--~-----------------------------~--~~~~~t~~~~~~~~~~~~ 63 (184)
+..++|+++|++++|||||+++|+... . . .....|+......+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 455899999999999999999996310 0 0 012234444444455566
Q ss_pred EEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC---Ch--H-HHHHHHHHHhcCCCCCCCc-EEEEeeCCCccCc
Q 029978 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NL--P-VSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEA 136 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~--~-~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~ 136 (184)
..+.+|||||+++|.......+..+|++++|+|+++.. ++ . .....+. ++.. .++| +|+|+||+|+.+.
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~-~~~~---lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAY-LLRA---LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHH-HHHH---SSCCCEEEEEECGGGGTT
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHH-HHHH---cCCCeEEEEEeccccccc
Confidence 78999999999999887788889999999999998643 22 1 1122222 2222 2465 9999999999752
Q ss_pred C--CH----hHHHHHc-CCCCcCCCceeEEEeeeCCCCCHH--------------HHHHHHHHHh
Q 029978 137 L--SK----EDLMEQM-GLKSITDREVCCYMISCKNSTNID--------------TVIDWLVKHS 180 (184)
Q Consensus 137 ~--~~----~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~--------------~l~~~i~~~~ 180 (184)
. .. .++.+.+ .........++++++||++|.|++ .|++.|...+
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 1 11 2222222 211222235689999999999998 7888887654
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.83 E-value=2.1e-19 Score=145.46 Aligned_cols=117 Identities=19% Similarity=0.123 Sum_probs=85.6
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcCCCCCC--------------------CCCCccceeeEEeeCCEEEEEEeCC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSED--------------------MIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
++...+..+|+|+|++|+|||||++++++...... ...|.......+....+.+++||||
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTp 82 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAP 82 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCC
Confidence 34567788999999999999999999984322100 1113333334566778999999999
Q ss_pred CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
|++++......+++.+|++++|+|+++....+. ..++..+.. .++|+++|+||+|+.
T Consensus 83 G~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 83 GYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred CccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH----ccCCEEEEecCCchh
Confidence 999999989999999999999999877544332 334443333 368999999999997
No 178
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.82 E-value=1.8e-19 Score=134.18 Aligned_cols=175 Identities=18% Similarity=0.171 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhhccC--CceEEEEEcCCCCChHHHHHHHHcCCC-CCCCCCCcc-c---eeeE-----------------
Q 029978 3 LWEAFLNWLRSLFFK--QEMELSLIGLQNAGKTSLVNVIATGGY-SEDMIPTVG-F---NMRK----------------- 58 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~i~iiG~~g~GKStli~~l~~~~~-~~~~~~t~~-~---~~~~----------------- 58 (184)
+.+++.+.+..+-.. ...+|+++|.+|+|||||++++++..+ +.....+.. . ....
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~ 85 (315)
T 1jwy_B 6 VINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFL 85 (315)
T ss_dssp HHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEES
T ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhh
Confidence 345555555444332 457899999999999999999998765 221111000 0 0000
Q ss_pred ----------------------------------------EeeCCEEEEEEeCCCccc-------------chHhHHHhc
Q 029978 59 ----------------------------------------VTKGNVTIKLWDLGGQPR-------------FRSMWERYC 85 (184)
Q Consensus 59 ----------------------------------------~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~ 85 (184)
.......+.+|||||... +......++
T Consensus 86 ~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (315)
T 1jwy_B 86 HKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI 165 (315)
T ss_dssp SSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH
Confidence 111235799999999753 445667788
Q ss_pred cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCC--CcCCCceeEEEeee
Q 029978 86 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK--SITDREVCCYMISC 163 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa 163 (184)
..+|++++|+|..+..........+...... .+.|+++|+||+|+..... +..+.+... ......+++..+|+
T Consensus 166 ~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~v~~~sa 240 (315)
T 1jwy_B 166 KKQNAIIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGT--DAMEVLTGRVIPLTLGFIGVINRSQ 240 (315)
T ss_dssp HSTTEEEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSC--CCHHHHTTSSSCCTTCEEECCCCCH
T ss_pred cCCCeEEEEEEecCcchhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcch--HHHHHHhCCCccCCCCeEEEecCCh
Confidence 9999999999975433111111122222222 4789999999999976433 112222211 11122234445566
Q ss_pred CC---CCCHHHHHHHHHHHhhh
Q 029978 164 KN---STNIDTVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~---~~~v~~l~~~i~~~~~~ 182 (184)
.+ +.|++++++.+.+.+..
T Consensus 241 ~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 241 EDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp HHHSSSCCHHHHHHHHHHHHHT
T ss_pred hhhccCCCHHHHHHHHHHHHhC
Confidence 65 78999999998877653
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.82 E-value=6.2e-19 Score=143.29 Aligned_cols=117 Identities=22% Similarity=0.242 Sum_probs=87.8
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHc--CCCCC------------------CCCCCccceeeEEeeCCEEEEEEeCCCc
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIAT--GGYSE------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (184)
...+..+|+|+|++|+|||||+++++. +.+.. ....|+......+....+.+++|||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 345678999999999999999999984 22110 1233444455556777899999999999
Q ss_pred ccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 75 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
.++......+++.+|++++|+|+++....+... .|..+.. .++|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHHHHH----cCCCEEEEEECCCcccc
Confidence 999988999999999999999999876665543 3333333 36899999999999764
No 180
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=2.4e-19 Score=130.33 Aligned_cols=118 Identities=16% Similarity=0.108 Sum_probs=80.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC--CCC-CCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhc--------
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY--SED-MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYC-------- 85 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~--~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~-------- 85 (184)
.+.++|+++|++|+|||||++++++... ... ...|.......+...+..+.+|||||++++......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 3679999999999999999999998764 222 22244444555667888999999999876543222222
Q ss_pred -cCCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCC-CCCCcEEEEeeCCCccC
Q 029978 86 -RAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPS-LNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 86 -~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~piilv~nK~D~~~ 135 (184)
..+|++++|++++... +.... .++..+..... ....|+++|+||+|+.+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 2789999999987654 44333 44444433211 12349999999999953
No 181
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.81 E-value=9.6e-21 Score=143.35 Aligned_cols=158 Identities=18% Similarity=0.258 Sum_probs=77.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC-CCCCC--------CCCccceeeEE--eeC--CEEEEEEeCCCc-------cc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG-YSEDM--------IPTVGFNMRKV--TKG--NVTIKLWDLGGQ-------PR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~-~~~~~--------~~t~~~~~~~~--~~~--~~~~~~~D~~g~-------~~ 76 (184)
...++|+++|++|+|||||++++.+.. +.... .+|+....... ... ...+.+|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 456899999999999999999987543 22222 13443332221 122 357999999998 55
Q ss_pred chHhHH-------HhccCC-------------CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 77 FRSMWE-------RYCRAV-------------SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 77 ~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
+..+.. .+++.+ |+++++++.. ..++......+...+. .++|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 544443 444332 3455555432 3456655543333332 57899999999999764
Q ss_pred CCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 137 LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
.......+.+. .......++++++||+++.| ++.+..+.+.+.
T Consensus 190 ~ev~~~k~~i~-~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 190 KERERLKKRIL-DEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHHH-HHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 22221111111 11122345789999999998 776666665543
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.81 E-value=1e-18 Score=142.18 Aligned_cols=116 Identities=18% Similarity=0.109 Sum_probs=84.9
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcC--CCCC------------------CCCCCccceeeEEeeCC-------EEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATG--GYSE------------------DMIPTVGFNMRKVTKGN-------VTIKL 68 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~--~~~~------------------~~~~t~~~~~~~~~~~~-------~~~~~ 68 (184)
..+..+|+|+|+.|+|||||+++|+.. .+.. ....|+......+.+.. +.+++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 345689999999999999999999742 1110 12223333333444444 89999
Q ss_pred EeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
|||||+.+|.......++.+|++++|+|+++....+.. ..|..... .++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCEEEEEeCCCcccc
Confidence 99999999999999999999999999999986554433 23333322 47899999999998764
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.81 E-value=4.4e-19 Score=144.20 Aligned_cols=162 Identities=17% Similarity=0.182 Sum_probs=105.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCC-CCCCCCCccc-e----------eeEE------------------------
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGY-SEDMIPTVGF-N----------MRKV------------------------ 59 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~-~~~~~~t~~~-~----------~~~~------------------------ 59 (184)
.+..++|+|+|.+|+|||||+|+|++... +....|++.. . ...+
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 45689999999999999999999997664 2233333310 0 0000
Q ss_pred --------------------eeCC----EEEEEEeCCCccc---chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHH
Q 029978 60 --------------------TKGN----VTIKLWDLGGQPR---FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHD 112 (184)
Q Consensus 60 --------------------~~~~----~~~~~~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 112 (184)
..+. ..+.+|||||... .......+++.+|++++|+|+++..+......+...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 0000 3589999999654 345566788999999999999987766554333222
Q ss_pred HhcCCCCCCCcEEEEeeCCCccCcC-----CHhH-------HHH----HcCCC----CcCCCceeEEEeeeC--------
Q 029978 113 LLSKPSLNGIPLLVLGNKIDKPEAL-----SKED-------LME----QMGLK----SITDREVCCYMISCK-------- 164 (184)
Q Consensus 113 ~~~~~~~~~~piilv~nK~D~~~~~-----~~~~-------~~~----~~~~~----~~~~~~~~~~~~Sa~-------- 164 (184)
+ .. .+.|+++|+||+|+.... ..++ +.+ .+... .......+++++||+
T Consensus 226 l-~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 I-KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp T-TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred H-Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 2 22 367899999999986542 1101 111 11100 000123469999999
Q ss_pred ------CCCCHHHHHHHHHHHhh
Q 029978 165 ------NSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 165 ------~~~~v~~l~~~i~~~~~ 181 (184)
++.|++++++.+.+.+.
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHH
T ss_pred CchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988764
No 184
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.80 E-value=3.1e-18 Score=135.72 Aligned_cols=115 Identities=20% Similarity=0.236 Sum_probs=87.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc-------------C-----------CCCCCCCCCccceeeEEeeCCEEEEEEeCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT-------------G-----------GYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~-------------~-----------~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+.-+|+|+|+.++|||||..+++. + ....+..-|+......+.+.++.++++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 4568899999999999999999971 1 012334446666777788999999999999
Q ss_pred CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
|+.+|.....+.++-+|++|+|+|+...-.-+. ...|..... .++|+++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHH----hCCceEEEEecccchhc
Confidence 999999999999999999999999987543333 233444433 47999999999998764
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.78 E-value=9.7e-19 Score=134.04 Aligned_cols=160 Identities=21% Similarity=0.209 Sum_probs=105.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCCccceeeEEeeCC-EEEEEEeCCCcccc-------hHhHHHhccC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGY--SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRF-------RSMWERYCRA 87 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~ 87 (184)
..-.|+++|++|+|||||++++.+... ......|.......+.... ..+.+||+||.... ..........
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 345689999999999999999986532 1222233333333344333 67999999996421 1122233567
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCC
Q 029978 88 VSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNS 166 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
++.++.++|++ .+++..+..+..++..... ....|.++|+||+|+......+++.+.+. ....+++++||+++
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi~iSA~~g 309 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTG 309 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTC
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEEEEECCCc
Confidence 99999999998 5566666555544433211 13579999999999976522223333221 12346999999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q 029978 167 TNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 167 ~~v~~l~~~i~~~~~~~ 183 (184)
.|++++++.|.+.+.+.
T Consensus 310 ~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 310 AGLPALKEALHALVRST 326 (416)
T ss_dssp TTHHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 99999999999988653
No 186
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.78 E-value=8.1e-19 Score=132.63 Aligned_cols=171 Identities=17% Similarity=0.209 Sum_probs=102.2
Q ss_pred hHHHHHHHHHhhccC---CceEEEEEcCCCCChHHHHHHHHcCCCCC-CC-----CCC----------------------
Q 029978 3 LWEAFLNWLRSLFFK---QEMELSLIGLQNAGKTSLVNVIATGGYSE-DM-----IPT---------------------- 51 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~---~~~~i~iiG~~g~GKStli~~l~~~~~~~-~~-----~~t---------------------- 51 (184)
+++++.+.++..-.. ...+|+++|.+|+|||||++++.+..+.+ .. .|+
T Consensus 12 ~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~ 91 (353)
T 2x2e_A 12 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKF 91 (353)
T ss_dssp HHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCccc
Confidence 456677666654332 34799999999999999999999877632 11 122
Q ss_pred ccce-------------------------eeEEeeC-CEEEEEEeCCCcc-------------cchHhHHHhccCCCEEE
Q 029978 52 VGFN-------------------------MRKVTKG-NVTIKLWDLGGQP-------------RFRSMWERYCRAVSAIV 92 (184)
Q Consensus 52 ~~~~-------------------------~~~~~~~-~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i 92 (184)
..+. ...+... ...+.+|||||.. .+......+++.++.++
T Consensus 92 tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 171 (353)
T 2x2e_A 92 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 171 (353)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEE
Confidence 0000 0111112 3679999999953 33455666776665554
Q ss_pred E-EEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 93 Y-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 93 ~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+ +++++. .+..... ..++......+.|+++|+||+|+.+... ..+..+. ..........+++++||+++.|++
T Consensus 172 L~v~~a~~--~~~~~~~--~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~l~~~~~~v~~~SA~~~~~i~ 246 (353)
T 2x2e_A 172 LAVSPANS--DLANSDA--LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKK 246 (353)
T ss_dssp EEEEETTS--CGGGCHH--HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCHHHHHTTC
T ss_pred EEEecCCC--ccchhHH--HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhC-CcccccCCceEEEeCCcccccccc
Confidence 4 556553 2332221 1122222225789999999999975432 2222221 111111223578899999999999
Q ss_pred HHHHHHHH
Q 029978 171 TVIDWLVK 178 (184)
Q Consensus 171 ~l~~~i~~ 178 (184)
++++.+.+
T Consensus 247 ~l~~~l~~ 254 (353)
T 2x2e_A 247 DITAALAA 254 (353)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 99998876
No 187
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=6.2e-18 Score=123.39 Aligned_cols=119 Identities=13% Similarity=0.062 Sum_probs=79.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcccchH-------hHHHh--
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS-------MWERY-- 84 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~-- 84 (184)
...++|+++|.+|+|||||++++++..+. .....|........+.....+.+|||||+..+.. ....+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 35799999999999999999999977652 1222233333445667788999999999865431 12222
Q ss_pred ccCCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCC-CCCCcEEEEeeCCCccCc
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPS-LNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~piilv~nK~D~~~~ 136 (184)
.+.+|++++|+|++.. ++.... .++..+..... ....|+++|+||+|+.+.
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 3478999999998653 344433 44444432211 112699999999998653
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.77 E-value=7.4e-19 Score=133.19 Aligned_cols=150 Identities=16% Similarity=0.195 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcc-c--------------e-----------------------------
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVG-F--------------N----------------------------- 55 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~-~--------------~----------------------------- 55 (184)
..|+++|++|||||||++++.+..+.+....+.. . .
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 3899999999999999999998766322211110 0 0
Q ss_pred ------------eeEEe-eCCEEEEEEeCCCcccc-------------hHhHHHhccCCCEEEEEEeCCCCCChHHHHHH
Q 029978 56 ------------MRKVT-KGNVTIKLWDLGGQPRF-------------RSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 109 (184)
Q Consensus 56 ------------~~~~~-~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 109 (184)
...+. .....+.+|||||..++ ......+++.+|+++++++..+.+.... .
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~---~ 191 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS---D 191 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC---H
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH---H
Confidence 00011 11346899999997765 5667788999999999998766443322 1
Q ss_pred HHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHH
Q 029978 110 LHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 176 (184)
Q Consensus 110 ~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+..+.......+.|+++|+||+|+.+... ..+..+. .......+++++|++++.++++.++..
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEG----RSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTT----SSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcC----ccccccCCeEEEEECChHHhccCCCHH
Confidence 22233333335789999999999976422 2222221 112234568999999988877655443
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.73 E-value=5e-18 Score=128.35 Aligned_cols=108 Identities=14% Similarity=0.069 Sum_probs=71.6
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhH
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 141 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 141 (184)
.++.+.++||||.... .......+|++++|+|....+....+. ......|+++|+||+|+.+....+.
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHH
Confidence 4578999999995432 234458899999999987655432221 1113469999999999975432222
Q ss_pred HHHHcC----CCC--cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 142 LMEQMG----LKS--ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 142 ~~~~~~----~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
..+.+. ... .....++++++||++|.|++++++.|.+.+.
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 222221 110 0112357999999999999999999988765
No 190
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.72 E-value=6.7e-18 Score=139.75 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=84.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC------------CCC------CCCCCCccceeeEEee----------------C
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG------------GYS------EDMIPTVGFNMRKVTK----------------G 62 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~------------~~~------~~~~~t~~~~~~~~~~----------------~ 62 (184)
.+..+|+|+|++++|||||+++++.. .+. .....|+......+.+ .
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 45689999999999999999999853 110 0122344333333222 2
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccC
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 135 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 135 (184)
.+.+++|||||+.+|...+..+++.+|++++|+|+++..+++....| ..... .++|+++|+||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL-RQALG----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCeEEEEECCCcch
Confidence 68899999999999999999999999999999999998877765433 33332 4689999999999874
No 191
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.71 E-value=9.5e-19 Score=133.71 Aligned_cols=81 Identities=23% Similarity=0.291 Sum_probs=46.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeE--Ee----------------------eCCEEEEEEeCCC
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRK--VT----------------------KGNVTIKLWDLGG 73 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~--~~----------------------~~~~~~~~~D~~g 73 (184)
++|+++|.+|+|||||++++++.... ..+..|....... +. .....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999976532 2222333322221 10 1136799999999
Q ss_pred cccc----hHhHH---HhccCCCEEEEEEeCCCC
Q 029978 74 QPRF----RSMWE---RYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 74 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~ 100 (184)
.... ..+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22222 346889999999999875
No 192
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.71 E-value=1.1e-17 Score=134.85 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=110.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHc--CCCC------C------------CCCCCccceeeEEeeCCEEEEEEeCCCcccchH
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT--GGYS------E------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~--~~~~------~------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (184)
.+|+|+|+.++|||||..+++. +... . +..-|+......+.+.++.++++||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 3689999999999999999972 1110 0 012244444455677889999999999999999
Q ss_pred hHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCCCC------
Q 029978 80 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLKS------ 150 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~------ 150 (184)
...+.++-+|++++|+|+...-.-+. +..|..... .++|.++++||+|....+. .+++.+.++...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence 99999999999999999987543333 233444333 4689999999999876543 122222222100
Q ss_pred --------------------------------------------------cCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 151 --------------------------------------------------ITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 151 --------------------------------------------------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
......|++..||+++.||+.|++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 001234678899999999999999998875
Q ss_pred h
Q 029978 181 K 181 (184)
Q Consensus 181 ~ 181 (184)
.
T Consensus 238 p 238 (638)
T 3j25_A 238 Y 238 (638)
T ss_dssp C
T ss_pred c
Confidence 4
No 193
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.70 E-value=7.6e-17 Score=127.92 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=82.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeC------------------------------C-
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKG------------------------------N- 63 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~------------------------------~- 63 (184)
...+|+++|.+|+|||||+|++++..+. ....++........... .
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4579999999999999999999987653 22222221111000000 0
Q ss_pred ----------EEEEEEeCCCccc-----------chHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC
Q 029978 64 ----------VTIKLWDLGGQPR-----------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 122 (184)
Q Consensus 64 ----------~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (184)
..+.+|||||... +......++..+|++++|+|+++.........++..+.. .+.
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~ 219 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HED 219 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCC
Confidence 2588999999764 445667778899999999999886555555555444432 468
Q ss_pred cEEEEeeCCCccCcCCHhHHHH
Q 029978 123 PLLVLGNKIDKPEALSKEDLME 144 (184)
Q Consensus 123 piilv~nK~D~~~~~~~~~~~~ 144 (184)
|+++|+||+|+.......+...
T Consensus 220 pvilVlNK~Dl~~~~el~~~~~ 241 (550)
T 2qpt_A 220 KIRVVLNKADMVETQQLMRVYG 241 (550)
T ss_dssp GEEEEEECGGGSCHHHHHHHHH
T ss_pred CEEEEEECCCccCHHHHHHHHH
Confidence 9999999999986533333333
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.70 E-value=9.2e-18 Score=124.13 Aligned_cols=155 Identities=17% Similarity=0.262 Sum_probs=74.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC-CCCCCC--------CCCccceeeE--E--eeCCEEEEEEeCCCc-------cc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG-GYSEDM--------IPTVGFNMRK--V--TKGNVTIKLWDLGGQ-------PR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~-~~~~~~--------~~t~~~~~~~--~--~~~~~~~~~~D~~g~-------~~ 76 (184)
.-.++|+++|++|+|||||++++.+. .++... .++....... + ......+.+|||+|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34589999999999999999998764 333221 1222211111 1 223478999999997 44
Q ss_pred chHhHH-------HhccC-------------CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 77 FRSMWE-------RYCRA-------------VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 77 ~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
+..... .+++. +++++++.+.+. .++..... +++.... .+.|+++|+||.|+...
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l~-~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAIH-NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHHT-TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHHH-hcCCEEEEEEeCCCCCH
Confidence 443333 33322 233444444322 23444332 1211111 35799999999999653
Q ss_pred CCH----hHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 137 LSK----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 137 ~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
... +++.+... ...++++++||+++ |++++|+.+.+.+.+
T Consensus 171 ~e~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 171 KERERLKKRILDEIE-----EHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHHHHH-----HTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH-----HcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 211 11112111 12346899999999 999999998887653
No 195
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.70 E-value=3.4e-17 Score=115.84 Aligned_cols=151 Identities=16% Similarity=0.187 Sum_probs=93.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCC--------CCCCCc--------cceeeEE------------------eeC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSE--------DMIPTV--------GFNMRKV------------------TKG 62 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~--------~~~~t~--------~~~~~~~------------------~~~ 62 (184)
.+..+|+++|.+|+|||||++++....... ++..+. +...... ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 455789999999999999999998542111 111000 0001111 123
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--CCHh
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LSKE 140 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~ 140 (184)
.+.+.+|||+|+.... ..+....+.+++|+|+.+.... . ..+... .+.|+++|+||+|+.+. ...+
T Consensus 108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~-~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--V-EKHPEI------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--H-HHCHHH------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--h-hhhhhh------hhcCCEEEEecccCCcchhhHHH
Confidence 4678899999951110 0111356889999999875421 1 111111 24789999999999643 2344
Q ss_pred HHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhh
Q 029978 141 DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 182 (184)
+..+.+... ...++++++||++|.|++++++.+.+.+..
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 444433211 224579999999999999999999987754
No 196
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=2.5e-18 Score=127.24 Aligned_cols=133 Identities=14% Similarity=0.062 Sum_probs=100.7
Q ss_pred HHHHHHHcCCCC-CCCCCCccceeeEEeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCC-ChHHHHHHHH
Q 029978 34 SLVNVIATGGYS-EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELH 111 (184)
Q Consensus 34 tli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~ 111 (184)
+|+.++..+.|. ..+.||++..+......+..+.+||+ ++++..++..+++.+|++++|+|+++++ ++..+..|+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~ 109 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLV 109 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHH
Confidence 678888888888 88889998444321111227899999 8999999999999999999999999987 6777777776
Q ss_pred HHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 112 DLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 112 ~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
.+.. .++|+++|+||+|+.+... .++..+.+.. . .++++|||++|.|++++++.+..
T Consensus 110 ~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~-----~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 110 LAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSG-----L-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT-----T-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh-----h-CcEEEEECCCCcCHHHHHHHhcC
Confidence 5543 4799999999999975422 1223333221 1 46999999999999999987753
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=120.74 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=65.2
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCH--
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-- 139 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-- 139 (184)
.++.+.++||+|..... ......+|.+++|+|++..+..+.+.. .+ ...|.++|+||+|+.+....
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence 45678999999964222 334578999999999986432221111 11 24688999999999653211
Q ss_pred --hHHHHHcCCCCc--CCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 140 --EDLMEQMGLKSI--TDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 140 --~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
.++...+..... ....++++++||+++.|++++++.|.+.+.
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 122222222111 112357899999999999999999988753
No 198
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.69 E-value=8.5e-16 Score=125.42 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=81.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc--------CCC------------CCCCCCCccceeeEEee-------CCEEEEE
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT--------GGY------------SEDMIPTVGFNMRKVTK-------GNVTIKL 68 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~--------~~~------------~~~~~~t~~~~~~~~~~-------~~~~~~~ 68 (184)
..+--+|+|+|+.++|||||..+|+. ++. ..+..-|+......+.+ .++.+++
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 34557899999999999999999971 111 12223344434444433 2689999
Q ss_pred EeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
+||||+.+|.....+.++-+|++++|+|+...-..+. +..|..... .++|.++++||+|....
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANK----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----HTCCEEEEEECSSSTTC
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHH----cCCCeEEEEccccccCc
Confidence 9999999999999999999999999999987543333 233444333 47999999999998654
No 199
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.66 E-value=4e-15 Score=120.98 Aligned_cols=171 Identities=15% Similarity=0.118 Sum_probs=105.0
Q ss_pred hHHHHHHHHHhhccC---CceEEEEEcCCCCChHHHHHHHHcCCC-CCCCCCCccce-----------------------
Q 029978 3 LWEAFLNWLRSLFFK---QEMELSLIGLQNAGKTSLVNVIATGGY-SEDMIPTVGFN----------------------- 55 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~---~~~~i~iiG~~g~GKStli~~l~~~~~-~~~~~~t~~~~----------------------- 55 (184)
+.+++++-++++-.. .-.+|+++|..++|||||+|++++..+ +.....++...
T Consensus 32 ~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~ 111 (772)
T 3zvr_A 32 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF 111 (772)
T ss_dssp HHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCB
T ss_pred HHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCccc
Confidence 345566656555332 347999999999999999999998766 33322211100
Q ss_pred -----------------------------eeEEeeC-CEEEEEEeCCCccc-------------chHhHHHhc-cCCCEE
Q 029978 56 -----------------------------MRKVTKG-NVTIKLWDLGGQPR-------------FRSMWERYC-RAVSAI 91 (184)
Q Consensus 56 -----------------------------~~~~~~~-~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~~~~ 91 (184)
...+... ...+.++||||... .......++ ..+|++
T Consensus 112 ~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlI 191 (772)
T 3zvr_A 112 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 191 (772)
T ss_dssp CCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEE
Confidence 0001111 12478999999433 223344444 578999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHH
Q 029978 92 VYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNID 170 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
++|+|++....-.........+. ..+.|+++|+||+|+.+... ..++.. ...........+++++||++|.|++
T Consensus 192 L~VVDAs~~~~~~d~l~ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~Gvd 266 (772)
T 3zvr_A 192 LAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKK 266 (772)
T ss_dssp EEEEETTSCSSSCHHHHHHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSE
T ss_pred EEEEcCCCCcchhHHHHHHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccch
Confidence 99999987433232212222222 24789999999999976432 122222 1111112234578899999999999
Q ss_pred HHHHHHHH
Q 029978 171 TVIDWLVK 178 (184)
Q Consensus 171 ~l~~~i~~ 178 (184)
+|++.+.+
T Consensus 267 eL~eaI~~ 274 (772)
T 3zvr_A 267 DITAALAA 274 (772)
T ss_dssp EHHHHHHH
T ss_pred hHHHHHHH
Confidence 99999886
No 200
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.66 E-value=9.4e-16 Score=115.28 Aligned_cols=156 Identities=13% Similarity=0.141 Sum_probs=92.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC------CC---CCCCCCCc------------------cceeeE--------
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG------GY---SEDMIPTV------------------GFNMRK-------- 58 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~------~~---~~~~~~t~------------------~~~~~~-------- 58 (184)
+...+...|+++|++|+|||||++.+.+. .. ..++..+. ...+..
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l 130 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHL 130 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC----
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCcccccc
Confidence 44567789999999999999999999621 10 00000000 000000
Q ss_pred -------------EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 029978 59 -------------VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 125 (184)
Q Consensus 59 -------------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii 125 (184)
....++.+.++||||...... .....+|.+++|+|.+..+.++.+.. .. .+.|.+
T Consensus 131 ~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~i 198 (341)
T 2p67_A 131 GGASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADL 198 (341)
T ss_dssp -CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH------HHHCSE
T ss_pred chhHHHHHHHHHHhhccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCE
Confidence 013467899999999755432 24588999999999975432211110 00 146889
Q ss_pred EEeeCCCccCcCCHhHHHHHc----CC-CCc-CCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 126 VLGNKIDKPEALSKEDLMEQM----GL-KSI-TDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 126 lv~nK~D~~~~~~~~~~~~~~----~~-~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
+|+||+|+.+........+.+ +. ... .....+++++||++|.|++++++.|.+.+.
T Consensus 199 vv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 199 IVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 999999997542222221121 11 100 111347899999999999999999988654
No 201
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=121.95 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=70.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcCCCC-CCC-------CCCccceeeE--E--eeCCEEEEEEeCCCcccch-------
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATGGYS-EDM-------IPTVGFNMRK--V--TKGNVTIKLWDLGGQPRFR------- 78 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~~~~-~~~-------~~t~~~~~~~--~--~~~~~~~~~~D~~g~~~~~------- 78 (184)
-.++|+++|++|+|||||++.+.+..++ ... .+|....... + ......+.+||++|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 3478999999999999999999976653 111 1222211111 1 1223578999999976531
Q ss_pred Hh------------------HHHhccCCCEEEEEEeCCCC-CChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 79 SM------------------WERYCRAVSAIVYVVDAADY-DNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 79 ~~------------------~~~~~~~~~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
.. ...++..+++.++++....- .++.... .++..+. .++|+|+|+||+|+.....
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHHH
Confidence 11 01223444443444444322 3455544 3444432 3689999999999965422
Q ss_pred HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHh
Q 029978 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 180 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 180 (184)
.....+.+. .......++++++|++++.++++++..+...+
T Consensus 185 v~~~k~~i~-~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 185 CQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHH-HHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHH-HHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 111111110 00111234588899999999998887776543
No 202
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.64 E-value=4.3e-15 Score=111.76 Aligned_cols=81 Identities=25% Similarity=0.282 Sum_probs=56.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCCccceeeEEeeC-----------------CEEEEEEeCCCcccchH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSE--DMIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~~~~ 79 (184)
.++|+++|.+|+|||||++++++..+.. .+..|.......+... +..+.+|||||..+...
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 3689999999999999999999866432 2233444333333322 25799999999876532
Q ss_pred -------hHHHhccCCCEEEEEEeCCC
Q 029978 80 -------MWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 80 -------~~~~~~~~~~~~i~v~d~~~ 99 (184)
.....++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23345789999999999986
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.63 E-value=3.5e-16 Score=113.40 Aligned_cols=117 Identities=15% Similarity=-0.022 Sum_probs=69.4
Q ss_pred EEEEEEeCCCcccchHh------HHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC
Q 029978 64 VTIKLWDLGGQPRFRSM------WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137 (184)
Q Consensus 64 ~~~~~~D~~g~~~~~~~------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 137 (184)
+.+.+|||||+...... ....+.. +++++++|........................+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 57999999998764322 1124455 8888899886544433322211111110011358999999999997542
Q ss_pred CHhHHHHHcCC-------------------------CCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 138 SKEDLMEQMGL-------------------------KSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 138 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
..+++.+.+.. ........+++++||+++.|+++++++|.+.+.
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 22111111100 000011236899999999999999999998765
No 204
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.62 E-value=3.3e-15 Score=103.13 Aligned_cols=173 Identities=18% Similarity=0.219 Sum_probs=113.6
Q ss_pred HHHHhhccCCceEEEEEcCC-CCChHHHHHHHHcCCCCC-------CCCCCccceee-------EEe-----e-------
Q 029978 9 NWLRSLFFKQEMELSLIGLQ-NAGKTSLVNVIATGGYSE-------DMIPTVGFNMR-------KVT-----K------- 61 (184)
Q Consensus 9 ~~~~~~~~~~~~~i~iiG~~-g~GKStli~~l~~~~~~~-------~~~~t~~~~~~-------~~~-----~------- 61 (184)
+|++|+..+.+.++++.||. ..=..+|+.++....... .....++-... .++ .
T Consensus 6 ~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~ 85 (227)
T 3l82_B 6 SFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERD 85 (227)
T ss_dssp CSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC------
T ss_pred HHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhh
Confidence 45678888899999999964 233568999988533111 00111111110 000 0
Q ss_pred -----C---CEEEEEEeCC------CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHH---HHHhcCCC-CCCCc
Q 029978 62 -----G---NVTIKLWDLG------GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSEL---HDLLSKPS-LNGIP 123 (184)
Q Consensus 62 -----~---~~~~~~~D~~------g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~p 123 (184)
+ -.++-...+| ||..++..|..|+..+|++|||+|+++.+.+. .+..+ ..++.... ..++|
T Consensus 86 ~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gap 164 (227)
T 3l82_B 86 RAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRP 164 (227)
T ss_dssp -------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSC
T ss_pred hhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCe
Confidence 0 0122233343 78889999999999999999999999886554 44444 33444322 36899
Q ss_pred EEEEeeCC-CccCcCCHhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 124 LLVLGNKI-DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 124 iilv~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
++|.+||. |++....+.++.+.+++... .+.+.+..|||++|.|+.+-++|+.+.+..+
T Consensus 165 LLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 165 LLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp EEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred EEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 99999995 78888899999999998776 4788999999999999999999999888754
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.62 E-value=2.2e-15 Score=106.91 Aligned_cols=153 Identities=14% Similarity=0.192 Sum_probs=85.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCcccee----------------eEEeeC------------------
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNM----------------RKVTKG------------------ 62 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~----------------~~~~~~------------------ 62 (184)
.+..+|+++|.+|||||||++++....+.....+++..+. ..++.+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 4568999999999999999999997654433333332111 111100
Q ss_pred --CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCc--CC
Q 029978 63 --NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LS 138 (184)
Q Consensus 63 --~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~ 138 (184)
...+.++|++|.-... ..+-...+..+.++|.......... .... ...|.++|+||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~~---~~~~------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIEK---HPGI------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTTT---CHHH------HTTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHhh---hhhH------hhcCCEEEEeccccCchhHHH
Confidence 0134444554421100 0111223445556664322111100 0111 13678999999998653 23
Q ss_pred HhHHHHHcCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhhcC
Q 029978 139 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 184 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 184 (184)
.++..+.+.. ....++++++||++|.|++++++.+.+.+.+.+
T Consensus 184 ~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 226 (226)
T 2hf9_A 184 IKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKEVK 226 (226)
T ss_dssp HHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHhhC
Confidence 3433333221 012347999999999999999999998887643
No 206
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2e-14 Score=108.73 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEeeCCEEEEEEeCCCcccc-------hHhHHHhccCCCE
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~~~ 90 (184)
.+|+|+|.||||||||+|++++.... ..+..|.......+...+..+.++||||.... .......++.+|+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 58999999999999999999975532 33455666666677788899999999995321 1233455688999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhcC-CCCCCCcEEEEeeCCCc
Q 029978 91 IVYVVDAADYDNLPVSRSELHDLLSK-PSLNGIPLLVLGNKIDK 133 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~ 133 (184)
+++|+|++++. ........++... ......|.+++.||.|.
T Consensus 153 il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 153 LFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred cccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 99999998642 2222111222111 11134566677777775
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.57 E-value=2.9e-14 Score=106.96 Aligned_cols=157 Identities=11% Similarity=0.111 Sum_probs=92.5
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc------CCCC---CCCCCC------------ccc-----eeeE--------
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT------GGYS---EDMIPT------------VGF-----NMRK-------- 58 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~------~~~~---~~~~~t------------~~~-----~~~~-------- 58 (184)
++...+...++|+|++|+|||||++.+.+ +... .+...+ +++ ....
T Consensus 49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 128 (337)
T 2qm8_A 49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGT 128 (337)
T ss_dssp GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSS
T ss_pred CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCccccc
Confidence 45567788999999999999999999972 2210 000000 000 0000
Q ss_pred --------------EeeCCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 029978 59 --------------VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 124 (184)
Q Consensus 59 --------------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 124 (184)
.....+.+.++||+|...... .....+|.+++++|....+..+.+... ....|.
T Consensus 129 l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---------i~~~~~ 196 (337)
T 2qm8_A 129 LGGVAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---------IFELAD 196 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---------HHHHCS
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---------Hhcccc
Confidence 112467899999999754322 234679999999998643221111000 013466
Q ss_pred EEEeeCCCccCcCC-----HhHHHHHcCCCCcC--CCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 125 LVLGNKIDKPEALS-----KEDLMEQMGLKSIT--DREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 125 ilv~nK~D~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
++|+||+|+..... .+++...+.+.... ...++++++||+++.|+++|++.|.+...
T Consensus 197 ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 197 MIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 88889999754211 12222222221110 11346899999999999999999988754
No 208
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.54 E-value=9.6e-14 Score=104.93 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=55.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCCccceeeEEe---------------------eCCEEEEEEeCCCccc
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYS--EDMIPTVGFNMRKVT---------------------KGNVTIKLWDLGGQPR 76 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~--~~~~~t~~~~~~~~~---------------------~~~~~~~~~D~~g~~~ 76 (184)
++|+++|.+|+|||||++++.+.... ..+..|+........ ..+..+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57899999999999999999875421 112223332222221 1245799999999765
Q ss_pred c-------hHhHHHhccCCCEEEEEEeCCC
Q 029978 77 F-------RSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 77 ~-------~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
. .......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3 2334456789999999999986
No 209
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.49 E-value=7e-14 Score=101.03 Aligned_cols=111 Identities=18% Similarity=0.260 Sum_probs=88.5
Q ss_pred CCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHH---HHhcCCC-CCCCcEEEEeeC-CCccCcCCHhHHHHH
Q 029978 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELH---DLLSKPS-LNGIPLLVLGNK-IDKPEALSKEDLMEQ 145 (184)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~piilv~nK-~D~~~~~~~~~~~~~ 145 (184)
.+||+..+..|..|+..+|++|+|+|+++.+.+. ....+. .++.... ..++|++|.+|| .|+.......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 3578899999999999999999999999988654 333332 3333211 257999999997 589888899999999
Q ss_pred cCCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhhhc
Q 029978 146 MGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 183 (184)
Q Consensus 146 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 183 (184)
+++... .+.+.+..|||++|.|+.+-++++.+.+..+
T Consensus 273 L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 998766 4778899999999999999999999988754
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.33 E-value=2.9e-12 Score=97.36 Aligned_cols=87 Identities=21% Similarity=0.313 Sum_probs=51.5
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcCCCCCC--CCCCccceeeEEeeC-----------------CEEEEEEeCCCccc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATGGYSED--MIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPR 76 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~--~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~ 76 (184)
....++|+++|.+|+|||||++++.+...... +..|.......+... +..+.+|||||...
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 35678999999999999999999997654322 233444333332221 34699999999876
Q ss_pred chH-------hHHHhccCCCEEEEEEeCCCCCC
Q 029978 77 FRS-------MWERYCRAVSAIVYVVDAADYDN 102 (184)
Q Consensus 77 ~~~-------~~~~~~~~~~~~i~v~d~~~~~~ 102 (184)
... ....+++.+|++++|+|+++.++
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 443 45677899999999999986543
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.22 E-value=6.5e-12 Score=92.85 Aligned_cols=96 Identities=18% Similarity=0.115 Sum_probs=70.4
Q ss_pred cccchHhHHHhccCCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCCC
Q 029978 74 QPRFRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLK 149 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~ 149 (184)
++++..+...+++.+|++++|+|+++++ ++..+..|+..+.. .++|+++|+||+|+.+... .++..+.+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~-- 139 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYR-- 139 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHH--
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHH--
Confidence 6666666677899999999999999886 78777777665543 4799999999999975421 122222211
Q ss_pred CcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 150 SITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
....+++++||++|.|++++++.+..
T Consensus 140 ---~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 140 ---DAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp ---HTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred ---HCCCeEEEEECCCCCCHHHHHhhccC
Confidence 11246999999999999999987653
No 212
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.14 E-value=7.1e-11 Score=92.54 Aligned_cols=154 Identities=16% Similarity=0.118 Sum_probs=87.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHH------cCCCC----CCCCCCc-----------cceeeE-----------------E
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA------TGGYS----EDMIPTV-----------GFNMRK-----------------V 59 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~------~~~~~----~~~~~t~-----------~~~~~~-----------------~ 59 (184)
+...|+++|.+||||||+++.+. +.... ..+.+.. +..... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998 22210 0001100 000000 1
Q ss_pred eeCCEEEEEEeCCCcccc----hHhHHHh--ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCC
Q 029978 60 TKGNVTIKLWDLGGQPRF----RSMWERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKID 132 (184)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~----~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 132 (184)
....+.+.++||||.... ....... ...+|.+++|+|+....... .....+.. ..|+ .+|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~-----~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD-----KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH-----HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh-----hcCceEEEEeCCc
Confidence 115678999999996532 1111111 22689999999998754311 22222211 2574 89999999
Q ss_pred ccCcCC-HhHHHHHcCCCC-------cC---CCceeEEEeeeCCCCC-HHHHHHHHHHH
Q 029978 133 KPEALS-KEDLMEQMGLKS-------IT---DREVCCYMISCKNSTN-IDTVIDWLVKH 179 (184)
Q Consensus 133 ~~~~~~-~~~~~~~~~~~~-------~~---~~~~~~~~~Sa~~~~~-v~~l~~~i~~~ 179 (184)
...... ...+.+..+... .. ....+..++|+..|.| +++|++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 875432 223333333211 00 0122345689999999 99999999765
No 213
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.11 E-value=5.7e-10 Score=84.93 Aligned_cols=83 Identities=23% Similarity=0.356 Sum_probs=58.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCC-CC--CCCCCccceeeEEeeCC-----------------EEEEEEeCCCccc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGY-SE--DMIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~-~~--~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~ 76 (184)
..+.+++++|++|+|||||++.+++... .. .+..|.......+...+ ..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 5578999999999999999999998654 22 22334444433333322 4689999999432
Q ss_pred -------chHhHHHhccCCCEEEEEEeCCC
Q 029978 77 -------FRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 77 -------~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+.......++.+|+++.|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33455667789999999999875
No 214
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.09 E-value=1.9e-09 Score=82.62 Aligned_cols=157 Identities=15% Similarity=0.245 Sum_probs=85.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCCCCCC------CCccceeeEEeeCCE-EEEEEeCCCcccc----hHhHHH-h
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYSEDMI------PTVGFNMRKVTKGNV-TIKLWDLGGQPRF----RSMWER-Y 84 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~------~t~~~~~~~~~~~~~-~~~~~D~~g~~~~----~~~~~~-~ 84 (184)
.....++++|++|+|||||++.+.+-..+..-. ++.... ..+....+ .+.++|++|.... ...... .
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~-~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~ 145 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER-HPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMK 145 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC-EEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeE-EeccccccCCeeehHhhcccchHHHHHHHHHHcC
Confidence 345689999999999999999998632221110 110011 11222222 5788999985321 111111 1
Q ss_pred ccCCCEEEEEEeCCCCCChHHHHHHH-HHHhcCCCCCCCcEEEEeeCCCcc---------CcCCHhHHHHHcCCCC----
Q 029978 85 CRAVSAIVYVVDAADYDNLPVSRSEL-HDLLSKPSLNGIPLLVLGNKIDKP---------EALSKEDLMEQMGLKS---- 150 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~piilv~nK~D~~---------~~~~~~~~~~~~~~~~---- 150 (184)
+...+..++ ++... ++..+..+ ..+.. .+.|+++|.||.|+. +....+++.+.+....
T Consensus 146 L~~~~~~~~-lS~G~---~~kqrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 146 FYEYDFFII-ISATR---FKKNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp GGGCSEEEE-EESSC---CCHHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCccCCeEE-eCCCC---ccHHHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 233455554 66642 12222222 23332 358999999998874 1122333333222110
Q ss_pred -cC-CCceeEEEeee--CCCCCHHHHHHHHHHHhhh
Q 029978 151 -IT-DREVCCYMISC--KNSTNIDTVIDWLVKHSKS 182 (184)
Q Consensus 151 -~~-~~~~~~~~~Sa--~~~~~v~~l~~~i~~~~~~ 182 (184)
.. .....++.+|+ .++.|++++.+.+.+.+.+
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 00 11235788999 6777899999999887754
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.05 E-value=5.8e-11 Score=90.07 Aligned_cols=124 Identities=11% Similarity=0.048 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcC------CCCC--CCCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATG------GYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~------~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
.+.+...+..+. +..+++++|.+|+|||||+|++.+. .... .+..|.... .+... ..+.++||||..
T Consensus 149 i~~L~~~I~~~~--~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~-~~~~liDtPG~~ 223 (369)
T 3ec1_A 149 MAKVMEAINRYR--EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMI--EIPLE-SGATLYDTPGII 223 (369)
T ss_dssp HHHHHHHHHHHH--TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEE--EEECS-TTCEEEECCSCC
T ss_pred HHHHHHHHHhhc--ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeE--EEEeC-CCeEEEeCCCcC
Confidence 345555554432 3568999999999999999999964 1211 122232222 22222 137899999953
Q ss_pred cch--------HhHHHhc--cCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcC
Q 029978 76 RFR--------SMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 137 (184)
Q Consensus 76 ~~~--------~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 137 (184)
... ......+ ...+.++++++....-.+..+ .........+.|+++++||.|.....
T Consensus 224 ~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l-----~~l~~l~~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 224 NHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGL-----ARLDYIKGGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp CCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTT-----EEEEEEESSSEEEEEEECTTSCEEEE
T ss_pred cHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCE-----EEEEEccCCCceEEEEecCCcccccc
Confidence 211 1222232 567889999987421000110 00112223568999999999987543
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.01 E-value=9.8e-11 Score=88.77 Aligned_cols=125 Identities=10% Similarity=0.019 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCC---------CCCCCCCccceeeEEeeCCEEEEEEeCCCc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGY---------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~---------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (184)
.+.+..++..+. +..+++++|.+|+|||||+|++.+... ...+..|.......+.. .+.++||||.
T Consensus 147 i~~L~~~l~~~~--~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~ 221 (368)
T 3h2y_A 147 IAELADAIEYYR--GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGI 221 (368)
T ss_dssp HHHHHHHHHHHH--TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCB
T ss_pred HHHHHhhhhhhc--ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCc
Confidence 345555554432 457899999999999999999986421 11122222222222211 2789999995
Q ss_pred ccch--------HhHHHh--ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC
Q 029978 75 PRFR--------SMWERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 138 (184)
Q Consensus 75 ~~~~--------~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 138 (184)
.... ...... ....+.++++++....-....+ .........+.|+++|+||+|......
T Consensus 222 ~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l-----~~~d~l~~~~~~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 222 INHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGL-----ARFDYVSGGRRAFTCHFSNRLTIHRTK 290 (368)
T ss_dssp CCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTT-----EEEEEEESSSEEEEEEECTTSCEEEEE
T ss_pred CcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcce-----EEEEEecCCCceEEEEecCcccccccc
Confidence 3211 112222 2556788888887321000110 001122235689999999999976543
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.95 E-value=2.2e-10 Score=86.85 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=67.0
Q ss_pred CcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcCC--C
Q 029978 73 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGL--K 149 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~--~ 149 (184)
.++.|......+.+.++++++|+|+++++ ..|...+.+.. .++|+++|+||+|+.+... .++..+.+.. .
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 36788888899999999999999998732 22222222221 3789999999999976432 2222211100 0
Q ss_pred CcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 150 SITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
.......+++++||++|.|++++++.+.+...
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 00111125899999999999999999977543
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.95 E-value=3.3e-09 Score=81.38 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=24.6
Q ss_pred hhccCCceE--EEEEcCCCCChHHHHHHHHcCC
Q 029978 13 SLFFKQEME--LSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 13 ~~~~~~~~~--i~iiG~~g~GKStli~~l~~~~ 43 (184)
++..+++.. ++|+|++|+|||||++.+.+..
T Consensus 34 sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred ceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 345555544 9999999999999999998754
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.93 E-value=4.3e-09 Score=76.50 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=60.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCCCCC---------CCCCCcc-ceeeEE---eeCCEEEEEEeCCCcccc--------
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGGYSE---------DMIPTVG-FNMRKV---TKGNVTIKLWDLGGQPRF-------- 77 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~~~~---------~~~~t~~-~~~~~~---~~~~~~~~~~D~~g~~~~-------- 77 (184)
.++++++|++|+|||||++.+.+...+. ....+.. .....+ ..-...+.++|++|....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5789999999999999999998532211 0111111 111111 111236889999973210
Q ss_pred --hH----hH----HH----------hccCCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCccCc
Q 029978 78 --RS----MW----ER----------YCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEA 136 (184)
Q Consensus 78 --~~----~~----~~----------~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~ 136 (184)
.. .. .. .+..+++.++++|-... +..... ..+..+.. . +++++|.||+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~~----~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLSK----V-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHHT----T-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHHh----c-CcEEEEEeccccCCH
Confidence 00 00 00 12235788888886532 222222 22233322 2 899999999998764
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.90 E-value=4.9e-10 Score=85.00 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=67.1
Q ss_pred cccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC-HhHHHHHcC--CCC
Q 029978 74 QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMG--LKS 150 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~--~~~ 150 (184)
++.|+.....+.+.++++++|+|++++++ .....+.... .+.|+++|+||+|+.+... .++..+.+. ...
T Consensus 58 ~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~ 130 (369)
T 3ec1_A 58 DDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEE 130 (369)
T ss_dssp -CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHH
Confidence 78899988888899999999999998653 1111112221 3689999999999976532 222222111 000
Q ss_pred cCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 151 ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
......+++++||++|.|++++++.+.+...
T Consensus 131 ~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 131 LGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 1111136899999999999999999987654
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.85 E-value=7.1e-09 Score=75.81 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=68.5
Q ss_pred EEeCCCcc-cchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHc
Q 029978 68 LWDLGGQP-RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM 146 (184)
Q Consensus 68 ~~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 146 (184)
+-..||+. +........+..+|+++.|+|+.++.+.... .+..+. .++|.++|+||+|+.+....+...+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 34568886 4566778889999999999999988766431 122222 468999999999997642222223322
Q ss_pred CCCCcCCCceeEEEeeeCCCCCHHHHHHHHHHHhh
Q 029978 147 GLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 181 (184)
Q Consensus 147 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 181 (184)
. ....+++++||+++.|++++++.+.+.+.
T Consensus 76 ~-----~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 E-----NQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp H-----TTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred H-----hcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 1 11236899999999999999998887764
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.70 E-value=4e-08 Score=71.84 Aligned_cols=56 Identities=27% Similarity=0.364 Sum_probs=35.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCCccceeeEEeeCCEEEEEEeCCCcc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (184)
...++++++|.+|+|||||+|++.+.... ..+..|........ + ..+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~--~-~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV--G-KELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE--T-TTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe--C-CCEEEEECcCcC
Confidence 45689999999999999999999965421 11222332222222 2 258899999964
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.66 E-value=1.7e-09 Score=83.54 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=82.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcC------CC---CCC-C---------------------C--CCccc-ee-eE--Eee
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATG------GY---SED-M---------------------I--PTVGF-NM-RK--VTK 61 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~------~~---~~~-~---------------------~--~t~~~-~~-~~--~~~ 61 (184)
...|+++|++|+||||++..+... .. ..+ + . .+... .. .. ...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998731 10 000 0 0 00000 00 00 001
Q ss_pred CCEEEEEEeCCCcccch----HhHHHh--ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC-c-EEEEeeCCCc
Q 029978 62 GNVTIKLWDLGGQPRFR----SMWERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI-P-LLVLGNKIDK 133 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-iilv~nK~D~ 133 (184)
..+.+.++||||..... ...... +..+|.+++|+|+.... ........+. ... | ..+|+||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~-----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK-----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH-----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh-----hcccCCeEEEEeCCCC
Confidence 45678999999965432 111111 23589999999986532 2222222222 124 5 8899999998
Q ss_pred cCcCC-HhHHHHHcCCCCc----------CCCceeEEEeeeCCCCC-HHHHHHHHHHHh
Q 029978 134 PEALS-KEDLMEQMGLKSI----------TDREVCCYMISCKNSTN-IDTVIDWLVKHS 180 (184)
Q Consensus 134 ~~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~-v~~l~~~i~~~~ 180 (184)
..... ...+....+.... .....+..++|+..|.| +..+++.+.+.+
T Consensus 251 ~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~ 309 (432)
T 2v3c_C 251 SAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV 309 (432)
T ss_dssp CSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS
T ss_pred ccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 54211 2223333322100 01122334578888888 777776665443
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.64 E-value=1.4e-08 Score=73.50 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCCccceeeEEeeCCEEEEEEeCCCccc
Q 029978 20 MELSLIGLQNAGKTSLVNVIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (184)
++++++|.+|+|||||+|++.+..... .+..|.... .+.. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe-CCCEEEEECCCccc
Confidence 699999999999999999999655421 111222221 1221 23688999999653
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.49 E-value=4.3e-07 Score=72.49 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=42.2
Q ss_pred HHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcCCCC-CCCCCCccceeeEE-------eeCCEEEEEEeCCCcc
Q 029978 8 LNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYS-EDMIPTVGFNMRKV-------TKGNVTIKLWDLGGQP 75 (184)
Q Consensus 8 ~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~~~-~~~~~t~~~~~~~~-------~~~~~~~~~~D~~g~~ 75 (184)
+..+.++ ..+...|+|+|.+|+|||||+|++++.... .....|.+...... ...+..+.++||||..
T Consensus 28 l~~L~~i-~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 28 LKILSAI-TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp HHHHHTC-CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred HHHHHhc-cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 3444443 355688999999999999999999976532 22211212111111 1245689999999954
No 226
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.49 E-value=8.8e-07 Score=71.33 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~ 43 (184)
.++|+|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 38999999999999999998754
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.48 E-value=1.1e-07 Score=73.32 Aligned_cols=111 Identities=15% Similarity=0.147 Sum_probs=61.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc------CCC---C-CCCCC-----------CccceeeE-----------------Ee
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT------GGY---S-EDMIP-----------TVGFNMRK-----------------VT 60 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~------~~~---~-~~~~~-----------t~~~~~~~-----------------~~ 60 (184)
+..|+++|++|+||||++..+.. ... . ..+.+ ..+..... ..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999998872 110 0 00000 00000000 01
Q ss_pred eCCEEEEEEeCCCcccch----HhHH--HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 61 KGNVTIKLWDLGGQPRFR----SMWE--RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~----~~~~--~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
..++.+.++||+|..... .... .....+|.+++|+|+.... ........+... -.+..+|.||+|..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---~a~~~a~~f~~~----~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---QAYNQALAFKEA----TPIGSIIVTKLDGS 252 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHHS----CTTEEEEEECCSSC
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---hHHHHHHHHHhh----CCCeEEEEECCCCc
Confidence 134789999999953221 1111 1123578999999997632 222222333222 13556899999986
Q ss_pred Cc
Q 029978 135 EA 136 (184)
Q Consensus 135 ~~ 136 (184)
..
T Consensus 253 ~~ 254 (443)
T 3dm5_A 253 AK 254 (443)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.37 E-value=1.3e-07 Score=68.32 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=60.1
Q ss_pred CCCcccc-hHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCCHhHHHHHcCCC
Q 029978 71 LGGQPRF-RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK 149 (184)
Q Consensus 71 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~ 149 (184)
.||+... .......+..+|+++.|+|+.++.+..... + .. . ++|.++|+||+|+.+....+...+.+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l-~l-l--~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----V-DF-S--RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----S-CC-T--TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----H-Hh-c--CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 4777643 456778889999999999999876554321 1 11 1 7899999999999764222222222211
Q ss_pred CcCCCceeEEEeeeCCCCCHHHHHHHHHH
Q 029978 150 SITDREVCCYMISCKNSTNIDTVIDWLVK 178 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
...++ .+||+++.|++++++.+.+
T Consensus 74 ----~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 ----QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ----TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ----cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 12246 8999999999999887654
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.19 E-value=7.3e-07 Score=68.69 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=38.2
Q ss_pred CEEEEEEeCCCccc------chHhHHHh--ccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCcc
Q 029978 63 NVTIKLWDLGGQPR------FRSMWERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~g~~~------~~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 134 (184)
.+.+.++||||... ........ ....+.+++|+|+............+.+. -.+..+|+||+|..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMDGT 251 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGGGC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccccc
Confidence 56788999999533 11111111 12468999999997643222222222221 13567899999975
Q ss_pred C
Q 029978 135 E 135 (184)
Q Consensus 135 ~ 135 (184)
.
T Consensus 252 a 252 (433)
T 3kl4_A 252 A 252 (433)
T ss_dssp S
T ss_pred c
Confidence 3
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.06 E-value=3.3e-06 Score=62.09 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=40.4
Q ss_pred CCEEEEEEeCCCccc--chH-hHH-----HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCC
Q 029978 62 GNVTIKLWDLGGQPR--FRS-MWE-----RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKID 132 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 132 (184)
..+.+.++||||... ... ... .....+|.+++|+|+... .........+.. ..| ..+|.||+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 567899999999765 321 111 123468999999998642 222222233322 245 678899999
Q ss_pred ccC
Q 029978 133 KPE 135 (184)
Q Consensus 133 ~~~ 135 (184)
...
T Consensus 251 ~~~ 253 (297)
T 1j8m_F 251 GTA 253 (297)
T ss_dssp GCT
T ss_pred CCc
Confidence 753
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.05 E-value=1.3e-06 Score=64.50 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=57.0
Q ss_pred HHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC----HhHHHHHcCCCCcCCCcee
Q 029978 82 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS----KEDLMEQMGLKSITDREVC 157 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~ 157 (184)
+..+..+|.+++|+|+.++..-......+...... .++|.++|+||+|+.+... .+++.+.+.. ...+
T Consensus 81 R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~-----~g~~ 152 (307)
T 1t9h_A 81 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN-----IGYD 152 (307)
T ss_dssp TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH-----HTCC
T ss_pred HHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHh-----CCCe
Confidence 34678899999999999776544443433333332 4689999999999976522 2333333211 1125
Q ss_pred EEEeeeCCCCCHHHHHHH
Q 029978 158 CYMISCKNSTNIDTVIDW 175 (184)
Q Consensus 158 ~~~~Sa~~~~~v~~l~~~ 175 (184)
++.+||+++.|+++|++.
T Consensus 153 v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EEECCHHHHTTCTTTGGG
T ss_pred EEEEecCCCCCHHHHHhh
Confidence 889999999998877654
No 232
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.98 E-value=5.9e-06 Score=57.49 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=27.4
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+++...+... .+++..|+|+|++|||||||++.+.+
T Consensus 9 ~~~~~~~~~~-~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 9 QGVLERLDPR-QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHSCTT-CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444433 46678999999999999999998874
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.98 E-value=3e-06 Score=63.13 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++--++++|++|+||||+++.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356788999999999999999987
No 234
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.94 E-value=2.5e-06 Score=60.29 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=20.6
Q ss_pred CchHHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHH-cC
Q 029978 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIA-TG 42 (184)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~-~~ 42 (184)
||-++.--+.--++...++-.++|+|++|||||||++.+. +.
T Consensus 9 ~~~~~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 9 MGTLEAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp -------------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred cchhhhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4444444444456667777889999999999999999998 53
No 235
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.91 E-value=9.7e-06 Score=54.97 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++....+..++...++-.++++|++|+|||||++.+.+
T Consensus 23 ~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 23 LLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34555666777777778899999999999999999874
No 236
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.87 E-value=2.2e-05 Score=54.30 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+++..++.+....++..|+|+|++||||||+++.+.+
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45677777776667778899999999999999998873
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.85 E-value=9.1e-06 Score=55.23 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+++++|++|+|||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 238
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.83 E-value=2.7e-05 Score=51.84 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=27.7
Q ss_pred HHhhccCCceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 11 LRSLFFKQEMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 11 ~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
.-++..+++-.++++|++|+|||||++.+.+..
T Consensus 25 ~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 25 LLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345666888889999999999999999998644
No 239
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.81 E-value=1.4e-05 Score=55.25 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++-.++++|++|||||||++.+.+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 45667899999999999999999853
No 240
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.80 E-value=8e-05 Score=57.55 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=39.0
Q ss_pred CCEEEEEEeCCCcccch-HhHH-----HhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCcc
Q 029978 62 GNVTIKLWDLGGQPRFR-SMWE-----RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKP 134 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~ 134 (184)
..+.+.++||||..... .... .....++.+++|+|+....... .....+.. ..+ .-+|.||+|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~-----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE-----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH-----HSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc-----cCCCeEEEEecCCCC
Confidence 46789999999964431 1111 1234678999999987543322 22222211 233 24689999985
Q ss_pred Cc
Q 029978 135 EA 136 (184)
Q Consensus 135 ~~ 136 (184)
..
T Consensus 254 ~~ 255 (433)
T 2xxa_A 254 AR 255 (433)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 241
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.80 E-value=9.3e-06 Score=56.97 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=22.5
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+.
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 455567778999999999999999999863
No 242
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.74 E-value=4.8e-06 Score=65.08 Aligned_cols=85 Identities=18% Similarity=0.206 Sum_probs=48.7
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcCCCCCCCCCCccceee----EEeeCCEEEEEEeCCCccc--chHhH-------
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPR--FRSMW------- 81 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~--~~~~~------- 81 (184)
+...+..|+++|.+|+||||+.+++...-.. ...++..+... ..........+||..|.+. .+..+
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~ 113 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALND 113 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999742110 01111111100 0001113346788888732 23222
Q ss_pred -HHhccCCCEEEEEEeCCCC
Q 029978 82 -ERYCRAVSAIVYVVDAADY 100 (184)
Q Consensus 82 -~~~~~~~~~~i~v~d~~~~ 100 (184)
..++...++.++|+|.++.
T Consensus 114 ~~~~l~~~~G~~vV~D~tn~ 133 (469)
T 1bif_A 114 VRKFLSEEGGHVAVFDATNT 133 (469)
T ss_dssp HHHHHHTTCCSEEEEESCCC
T ss_pred HHHHHHhCCCCEEEEeCCCC
Confidence 4455566788999999986
No 243
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.73 E-value=1.9e-05 Score=56.05 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=23.7
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|||||||++.+.+
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4456667789999999999999999874
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.73 E-value=2.6e-05 Score=53.24 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=23.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
..++-.++++|++||||||+++.+.+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 356678999999999999999999853
No 245
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.72 E-value=6.3e-05 Score=56.57 Aligned_cols=84 Identities=14% Similarity=0.048 Sum_probs=51.8
Q ss_pred hccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCccCcCC---HhHHHHHcCCCCcCCCceeEEE
Q 029978 84 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLKSITDREVCCYM 160 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
....+|.+++|.+. ++..-......+...... .++|.++|+||+|+.+... .+++...+. ....+++.
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~-----~~G~~v~~ 197 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR-----NIGYRVLM 197 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHH-----TTTCCEEE
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHH-----hCCCcEEE
Confidence 35778998887665 455433333333322221 3578899999999976532 112222221 12335899
Q ss_pred eeeCCCCCHHHHHHHH
Q 029978 161 ISCKNSTNIDTVIDWL 176 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i 176 (184)
+||.++.|++++...+
T Consensus 198 ~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 198 VSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred EecCCCcCHHHHHHhc
Confidence 9999999999987654
No 246
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.71 E-value=1.6e-05 Score=54.85 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++-.++|+|++|+|||||++.+.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999999975
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.71 E-value=1.5e-05 Score=53.65 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=22.2
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...++--++++|++|||||||++.+.
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 445667778999999999999999644
No 248
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.70 E-value=2.8e-05 Score=53.63 Aligned_cols=31 Identities=26% Similarity=0.543 Sum_probs=23.2
Q ss_pred HHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 11 LRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 11 ~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+++..++-.++|+|++|+|||||++.+..
T Consensus 11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 11 RENLYFQGRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp -----CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cccCCCCCCCEEEEECcCCCCHHHHHHHHHh
Confidence 3445556677889999999999999999984
No 249
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.69 E-value=2.6e-05 Score=55.61 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=23.1
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...++..|+|+|++|||||||++.+.+
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 56667888999999999999999999875
No 250
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.69 E-value=2.6e-05 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+-.++|+|++|||||||++.+.+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999985
No 251
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.69 E-value=5.4e-05 Score=58.57 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+-.-|+|+|++++|||||+|.+++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 345578999999999999999985
No 252
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.68 E-value=2.3e-05 Score=55.28 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=23.1
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445566789999999999999999874
No 253
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.68 E-value=5.7e-05 Score=55.89 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..++..|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 56778899999999999999999874
No 254
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.66 E-value=2.1e-05 Score=55.95 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=23.5
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445666789999999999999999974
No 255
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.66 E-value=2.1e-05 Score=56.73 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.7
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|||||||++.+.+
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4455666789999999999999999974
No 256
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.66 E-value=2.7e-05 Score=54.05 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=22.2
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
...++--++|+|++|||||||++.+.+-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4466677899999999999999999853
No 257
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.64 E-value=2e-05 Score=57.29 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=23.3
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|||||||++.+.+
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 3445666789999999999999999974
No 258
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.64 E-value=8e-05 Score=54.51 Aligned_cols=36 Identities=19% Similarity=0.085 Sum_probs=26.8
Q ss_pred HHHHHHHHhh---ccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 5 EAFLNWLRSL---FFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 5 ~~~~~~~~~~---~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+.+..++..+ ..++...|+|+|++|||||||++.+.
T Consensus 14 ~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 14 EFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp HHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3444444443 34567889999999999999998876
No 259
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.64 E-value=3.5e-05 Score=54.95 Aligned_cols=28 Identities=11% Similarity=0.304 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4456677899999999999999999984
No 260
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.63 E-value=2.2e-05 Score=56.20 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=23.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+..+++-.++|+|++|+|||||++.+.+-
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34456667899999999999999999743
No 261
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.63 E-value=2.5e-05 Score=56.39 Aligned_cols=28 Identities=14% Similarity=0.395 Sum_probs=23.5
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 4445666789999999999999999874
No 262
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.63 E-value=3.4e-05 Score=53.55 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+++..|+|+|++|||||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998874
No 263
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.62 E-value=3.2e-05 Score=55.91 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4445666789999999999999999985
No 264
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.62 E-value=2.4e-05 Score=55.33 Aligned_cols=29 Identities=31% Similarity=0.373 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33455667899999999999999999753
No 265
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.62 E-value=3.1e-05 Score=56.06 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=24.3
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44566677899999999999999999853
No 266
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.61 E-value=3.1e-05 Score=52.85 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
++++|++|||||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999984
No 267
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.61 E-value=2e-05 Score=55.19 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=23.1
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445566689999999999999999874
No 268
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.61 E-value=3.3e-05 Score=55.58 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=23.9
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44456667899999999999999999743
No 269
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.61 E-value=3.7e-05 Score=56.61 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=25.8
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..+++-.++|+|++|+|||||++.+.+
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 56778888999999999999999999874
No 270
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.61 E-value=4.1e-05 Score=52.85 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
.++..++++|++||||||+++.+.+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999998543
No 271
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.60 E-value=2.9e-05 Score=55.99 Aligned_cols=29 Identities=17% Similarity=0.398 Sum_probs=24.1
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44556677899999999999999999853
No 272
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.60 E-value=2.9e-05 Score=55.61 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3445666789999999999999999985
No 273
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.60 E-value=2.7e-05 Score=55.77 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++++|++|+|||||++.+.+
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4445666789999999999999999874
No 274
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.59 E-value=4e-05 Score=55.12 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=24.1
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 44556667899999999999999999843
No 275
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.59 E-value=4.6e-05 Score=54.26 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=22.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...+ -.++++|++|+|||||++.+.+-
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 33455 56899999999999999999853
No 276
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.58 E-value=3.1e-05 Score=56.14 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=24.1
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44556667899999999999999999743
No 277
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.58 E-value=3.7e-05 Score=55.96 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=23.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|+|||||++.+.+-
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34456667899999999999999999843
No 278
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.58 E-value=3.8e-05 Score=54.68 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=23.4
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3445666789999999999999999984
No 279
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.57 E-value=4.5e-05 Score=53.53 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++--++|+|++|||||||++.+.+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 55667899999999999999999853
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.56 E-value=5.1e-05 Score=52.27 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=21.2
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++...+...|+++|++||||||+.+.+.
T Consensus 19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 19 YFQSNAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHH
T ss_pred eEecCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4445566789999999999999999987
No 281
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.56 E-value=3.6e-05 Score=55.66 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4455666789999999999999999874
No 282
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.55 E-value=3.2e-05 Score=55.49 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|+|||||++.+.+-
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34455667899999999999999999753
No 283
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.54 E-value=6e-05 Score=52.35 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+++--++++|++||||||+++.+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 45667899999999999999999854
No 284
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.53 E-value=6.6e-05 Score=51.07 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=23.8
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...+...|+++|++||||||+.+.+..
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 44556678899999999999999999874
No 285
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.49 E-value=4.8e-05 Score=55.69 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=23.2
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|+|||||++.+.+
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3345566789999999999999999874
No 286
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.49 E-value=7.4e-05 Score=56.31 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=24.1
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++|+|++|||||||++.+.+-
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 44556667899999999999999999853
No 287
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.48 E-value=9.1e-05 Score=57.02 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
+-.++++|++|+||||++..+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999887
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.48 E-value=8.8e-05 Score=51.11 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=23.7
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++..|+++|++|+||||+++.+.+
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456678899999999999999998873
No 289
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.48 E-value=7.1e-05 Score=53.30 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...|+|+|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 290
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.47 E-value=8e-05 Score=51.33 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++..++++|++||||||+++.+.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467789999999999999999873
No 291
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.46 E-value=8e-05 Score=56.05 Aligned_cols=29 Identities=31% Similarity=0.361 Sum_probs=23.9
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 34456667899999999999999999853
No 292
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.46 E-value=3.1e-05 Score=57.09 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=23.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-.++|+|++|+|||||++.+.+
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 4456677899999999999999998874
No 293
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.46 E-value=0.00011 Score=52.95 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=23.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..++-.++|+|++|||||||++.+.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHH
Confidence 56677899999999999999999874
No 294
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.46 E-value=0.00015 Score=53.85 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...+-|+|+|++|||||||++.+.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998863
No 295
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.45 E-value=7.5e-05 Score=50.05 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..|+++|++||||||+++.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 296
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.44 E-value=6.4e-05 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++-.++++|++|+|||||++.+.+-
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44557899999999999999999853
No 297
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.42 E-value=7.9e-05 Score=50.77 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999974
No 298
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.42 E-value=8.1e-05 Score=53.71 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
+... +-.++++|++|+|||||++.+.+-.
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445 6678999999999999999998543
No 299
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.41 E-value=0.00012 Score=49.22 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++++|++||||||+++.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356789999999999999998863
No 300
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.41 E-value=0.00012 Score=49.72 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.+..|+++|++||||||+.+.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999987
No 301
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.40 E-value=0.00011 Score=55.77 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 44456667899999999999999999853
No 302
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.40 E-value=0.00011 Score=55.40 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=23.9
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 44456667899999999999999999853
No 303
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.40 E-value=8.8e-05 Score=50.83 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 579999999999999999885
No 304
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.40 E-value=9.9e-05 Score=49.31 Aligned_cols=20 Identities=15% Similarity=0.489 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCChHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVI 39 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l 39 (184)
..|+++|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 305
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.40 E-value=8.5e-05 Score=51.37 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++..|+++|++||||||+++.+..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999974
No 306
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.39 E-value=9.5e-05 Score=50.50 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
|+|+||+|||||||++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
No 307
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.39 E-value=0.00011 Score=55.31 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=23.9
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 44456667899999999999999999853
No 308
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.39 E-value=0.0001 Score=55.43 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34455666899999999999999999853
No 309
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.38 E-value=0.0001 Score=55.43 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
+-.++++|++|+|||||++.+.+..
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 3478999999999999999998643
No 310
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.38 E-value=0.00014 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...|+|+|++||||||+++.+.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999985
No 311
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.37 E-value=0.00013 Score=52.30 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.1
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHH
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
..++..|+|+|++||||||+++.+.
T Consensus 24 ~~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 24 TAIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999997
No 312
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.37 E-value=0.00011 Score=48.99 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
.|+++|++||||||+.+.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999987
No 313
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.37 E-value=0.00013 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...|+|+|++||||||+++.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998873
No 314
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.37 E-value=0.00013 Score=55.28 Aligned_cols=29 Identities=34% Similarity=0.375 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 44456667899999999999999999853
No 315
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.34 E-value=0.00011 Score=52.14 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++--++++|++|+|||||++.+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 455668999999999999999887
No 316
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.34 E-value=0.00013 Score=50.33 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
+|+|+|++||||||+.+.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999985
No 317
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.33 E-value=0.00014 Score=53.48 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++-.++++|++||||||+++.+.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 345678999999999999999997
No 318
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.33 E-value=0.0036 Score=42.84 Aligned_cols=81 Identities=9% Similarity=0.068 Sum_probs=50.0
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCccCcC--CH
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP-SLNGIPLLVLGNKIDKPEAL--SK 139 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~--~~ 139 (184)
.+.+.++|+|+... ......+..+|.+++++..+... .........+.... ...+.++.+|.|+.|..... ..
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~ 150 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVL 150 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHH
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHH
Confidence 47899999997652 33345566789999999886544 45544444443221 12456789999999864321 23
Q ss_pred hHHHHHcC
Q 029978 140 EDLMEQMG 147 (184)
Q Consensus 140 ~~~~~~~~ 147 (184)
.+..+..+
T Consensus 151 ~~~l~~~~ 158 (206)
T 4dzz_A 151 KESIKDTG 158 (206)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcC
Confidence 44444444
No 319
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.33 E-value=0.00015 Score=48.72 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..|++.|++||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999985
No 320
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.32 E-value=0.00015 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.|+++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 321
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.32 E-value=0.00013 Score=55.21 Aligned_cols=29 Identities=31% Similarity=0.322 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 33455566899999999999999999854
No 322
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.32 E-value=0.00014 Score=50.66 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
++|+|+|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999985
No 323
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.32 E-value=0.00012 Score=55.84 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...++-.++|+|++|||||||++.+.+
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 3445666789999999999999999985
No 324
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.32 E-value=0.00015 Score=53.45 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++..|+|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5668899999999999999999874
No 325
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.31 E-value=0.00019 Score=48.90 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+..|+++|++||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999863
No 326
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.31 E-value=0.00014 Score=50.56 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
++|+|+|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999996
No 327
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.30 E-value=0.00025 Score=54.57 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=23.6
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+...++-.++|+|++|||||||++.+.+
T Consensus 160 ~~l~~~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 160 RRLIKRPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp HHHHTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEECCCCCCHHHHHHHHHh
Confidence 333334556789999999999999999984
No 328
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.30 E-value=0.00018 Score=49.45 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=22.8
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
....+..|+++|++||||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345567899999999999999999873
No 329
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.30 E-value=0.00017 Score=54.35 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=22.3
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...++-.++|+|++|||||||++.+.+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 334445899999999999999999874
No 330
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.29 E-value=0.00017 Score=50.43 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++...|+++|++||||||+.+.|.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999886
No 331
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.29 E-value=0.00011 Score=55.45 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.-+++|+|++|+|||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999853
No 332
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.29 E-value=0.0001 Score=55.31 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=24.1
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 44556667899999999999999999853
No 333
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.28 E-value=0.00017 Score=48.92 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..|+|.|++||||||+++.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999863
No 334
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.28 E-value=0.00018 Score=51.43 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=21.7
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.....+.+.|+|.|++||||||+.+.|..
T Consensus 16 ~~~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 16 QPNGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred hccCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34445568899999999999999998874
No 335
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.27 E-value=0.00015 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...|+|+|++||||||+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999863
No 336
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.27 E-value=0.00022 Score=48.41 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.4
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
...++..|+++|.+||||||+++.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 34567889999999999999999986
No 337
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.27 E-value=0.00017 Score=53.12 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcCC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~~ 43 (184)
+-.++++|++|+|||||++.+.+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 3467999999999999999998543
No 338
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.26 E-value=0.00021 Score=50.89 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.+.+.|+++|++||||||+.+.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999996
No 339
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.26 E-value=4.6e-05 Score=56.18 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++-.++++|++|+|||||+|.+.+.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 4567899999999999999999753
No 340
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.26 E-value=0.00017 Score=53.03 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
+..++++|++|+|||||++.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999998
No 341
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.25 E-value=0.00019 Score=49.29 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|+|.|++||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999874
No 342
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.25 E-value=0.00023 Score=48.85 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=22.8
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++...|+|+|++||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 345678999999999999999999853
No 343
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.25 E-value=0.00021 Score=49.10 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..|+++|++||||||+++.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999984
No 344
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.24 E-value=0.00022 Score=49.20 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..|++.|++||||||+++.+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999874
No 345
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.23 E-value=0.00012 Score=55.34 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=25.6
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..+++-.++|+|++|+|||||++.+.+
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 55667788999999999999999999984
No 346
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.22 E-value=0.00023 Score=48.33 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|+|.|++||||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999873
No 347
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.22 E-value=9.7e-05 Score=55.55 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=24.2
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++-.++++|++|||||||++.+.+-
T Consensus 26 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 26 INIENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 44556667899999999999999999854
No 348
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.21 E-value=0.00024 Score=48.34 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
+..|+++|.+||||||+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999886
No 349
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.21 E-value=0.00021 Score=50.02 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++--++|+|++|+|||||++.+.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4566789999999999999999975
No 350
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.21 E-value=0.0003 Score=53.32 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=22.8
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..++-.++|+|++||||||+++.+.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 45667899999999999999999984
No 351
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.20 E-value=0.00025 Score=49.16 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+++..|++.|.+||||||+++.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999873
No 352
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.20 E-value=0.00021 Score=48.02 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..|.++|++||||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 353
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.19 E-value=0.00056 Score=49.93 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+..|++.|++||||||+++.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467789999999999999999973
No 354
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.19 E-value=0.00024 Score=53.47 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++-.++++|++||||||++..+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHH
Confidence 345678999999999999999987
No 355
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.19 E-value=0.00026 Score=48.29 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.+...|+++|++||||||+.+.+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999986
No 356
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.18 E-value=0.00025 Score=49.02 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999873
No 357
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00018 Score=55.95 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=26.1
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++...++-.++|+|++|||||||++.+.+
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 456667888899999999999999999884
No 358
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.17 E-value=0.00023 Score=51.62 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999984
No 359
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.17 E-value=0.0003 Score=48.36 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.+...|++.|++||||||+.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 445678999999999999999987
No 360
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.17 E-value=0.00025 Score=47.93 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..++++|++|+|||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3578999999999999999984
No 361
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.16 E-value=0.00026 Score=55.42 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.7
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHH
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
..++-.++|+|++|||||||++.+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHH
Confidence 3456678999999999999999987
No 362
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.16 E-value=0.00026 Score=49.27 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
++|++.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999986
No 363
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.15 E-value=0.00024 Score=47.95 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.....|+++|++|+||||+.+.+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 345678999999999999999987
No 364
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.15 E-value=0.00028 Score=47.77 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
...|+++|++||||||+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999986
No 365
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.14 E-value=0.00027 Score=49.59 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...|+++|++||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999999987
No 366
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.14 E-value=0.00028 Score=49.00 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 029978 20 MELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~ 40 (184)
+.|+++|+|||||+|...++.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999987
No 367
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.14 E-value=0.00079 Score=45.28 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...-.+.+.|++|+|||++++.+..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999998874
No 368
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.13 E-value=0.00012 Score=49.40 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.++|+|++|||||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999884
No 369
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.12 E-value=0.00023 Score=50.14 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++.-|+|.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 56788999999999999999998753
No 370
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.12 E-value=0.00037 Score=47.00 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..|+++|.+||||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999874
No 371
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.12 E-value=0.00033 Score=46.58 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
+|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999873
No 372
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.11 E-value=0.00077 Score=46.27 Aligned_cols=22 Identities=41% Similarity=0.410 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+.+.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999998874
No 373
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.11 E-value=0.00013 Score=54.48 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=24.8
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++...++-.++|+|++|+|||||++.+.+-
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344466678999999999999999999853
No 374
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.11 E-value=0.0002 Score=56.50 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=23.5
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+....+..++|+|++||||||+++.+.+
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGG
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445666799999999999999999985
No 375
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.10 E-value=0.00038 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+.|+|.|++||||||+.+.+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
No 376
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.09 E-value=0.00036 Score=51.43 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++-.++++|++||||||+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 35678999999999999999997
No 377
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.09 E-value=0.00028 Score=47.44 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
+|+|+|++||||||+.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 378
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.09 E-value=0.00034 Score=49.91 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
++++|++|+|||||++.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999985
No 379
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.09 E-value=0.00024 Score=46.71 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++-.++++|++|+|||||++.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 455689999999999999999884
No 380
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.08 E-value=0.00033 Score=47.33 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=19.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++ -.+|+|++|+|||||++.+..
T Consensus 25 ~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 25 SKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp CSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHH
Confidence 344 458999999999999999863
No 381
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.07 E-value=0.00029 Score=52.87 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=26.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++=+++|+|++|+|||||++.+.+.
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56678889999999999999999999864
No 382
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.06 E-value=0.00038 Score=55.86 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=24.8
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..+++-.++++|++|+|||||++.+.+
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45556777899999999999999999984
No 383
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.06 E-value=0.00062 Score=47.09 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=24.4
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+..|++.. ++.-.+.+.||||+||||++..+.+
T Consensus 46 ~~l~~~~~~i--Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 46 GALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHhcC--CcccEEEEECCCCCCHHHHHHHHHH
Confidence 3444455432 3334589999999999999888873
No 384
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.06 E-value=0.00031 Score=49.13 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
....|+|+|++||||||+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999986
No 385
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.05 E-value=0.00039 Score=47.27 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 386
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.05 E-value=0.00036 Score=56.01 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=23.7
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-.++++|++|+|||||++.+.+
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3445667899999999999999999874
No 387
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.04 E-value=0.00039 Score=47.41 Aligned_cols=21 Identities=19% Similarity=0.532 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|++.|++||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999873
No 388
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.04 E-value=0.0004 Score=48.67 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
.|++.|++||||||+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
No 389
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.04 E-value=0.0004 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...|+++|++||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999986
No 390
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.03 E-value=0.00033 Score=50.15 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+..|+++|++||||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999999863
No 391
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.03 E-value=0.00061 Score=47.27 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=22.9
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...++..|+++|.+|+||||+++.+.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 344667789999999999999999886
No 392
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.03 E-value=0.00042 Score=47.35 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
....|+++|++||||||+.+.+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999873
No 393
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.02 E-value=0.00029 Score=47.50 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=16.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...|++.|.+||||||+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999999986
No 394
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.00 E-value=0.00061 Score=48.05 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++..|++.|++||||||+++.+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3678899999999999999999874
No 395
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.99 E-value=0.00047 Score=48.75 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
...+.|+|.|++|+||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999886
No 396
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.99 E-value=0.00087 Score=44.95 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...-.+.+.|++|+|||++++.+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999998874
No 397
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.99 E-value=0.00026 Score=56.97 Aligned_cols=28 Identities=18% Similarity=0.371 Sum_probs=23.8
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-.++++|++|+|||||++.+.+
T Consensus 365 l~i~~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 365 LSIPSGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp EEECTTCEEEEECCTTSSSTHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4456667899999999999999999874
No 398
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.99 E-value=0.00031 Score=50.30 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=23.1
Q ss_pred hccCC---ceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQ---EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~---~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+...+ +-.|+|+|++|+||||+.+.+..
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 44445 67899999999999999999863
No 399
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.99 E-value=0.00081 Score=47.15 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..-.+.+.|++|+|||||++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467789999999999999998873
No 400
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.99 E-value=0.0003 Score=56.59 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-.++++|++|+|||||++.+.+
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4456677899999999999999999874
No 401
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.98 E-value=0.00048 Score=49.90 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 029978 22 LSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~ 41 (184)
++++|++|+|||||++.+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 89999999999999999985
No 402
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.96 E-value=0.00056 Score=48.22 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.....|+++|.+||||||+.+.|.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 445789999999999999999987
No 403
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.96 E-value=0.014 Score=41.82 Aligned_cols=66 Identities=5% Similarity=-0.093 Sum_probs=41.9
Q ss_pred CCEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 029978 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 132 (184)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 132 (184)
..+.+.++|+|+... ......+..+|.+++++..+. .+..........+... . .+.++.+|+|+.+
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~-~-~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKL-N-LFLPIFLIITRFK 208 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTT-T-CCCCEEEEEEEEC
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHH-h-ccCCEEEEEeccc
Confidence 346789999987542 233455667999999998853 3444444433333322 2 3567889999984
No 404
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.96 E-value=0.00064 Score=46.09 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 029978 19 EMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~ 40 (184)
...|+++|++||||||+.+.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999986
No 405
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.95 E-value=0.00065 Score=49.41 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
...+.|+|+|++||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999987
No 406
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.94 E-value=0.00061 Score=48.95 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...|+++|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999873
No 407
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.94 E-value=0.00049 Score=49.28 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
.|+|+|++|||||||...+.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999999999986
No 408
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.94 E-value=0.0012 Score=45.54 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.+.+.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998873
No 409
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.94 E-value=0.00049 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++--++++|++|+|||||+..+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHH
Confidence 455568999999999999999987
No 410
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.93 E-value=0.00073 Score=53.69 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=23.2
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
..++-.++++|++|+|||||++.+.+-
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356667899999999999999999863
No 411
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.93 E-value=0.00055 Score=45.95 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..++++|++|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999873
No 412
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.93 E-value=0.00054 Score=45.72 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|+++|++||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999873
No 413
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.93 E-value=0.00055 Score=53.00 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=26.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+...++=+++|+|++|+|||||++.+.+.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 66788889999999999999999999864
No 414
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.92 E-value=0.00062 Score=45.34 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|+++|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 415
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.91 E-value=0.00055 Score=46.26 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|+++|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998863
No 416
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.91 E-value=0.00069 Score=51.37 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-.++++|++|+|||||++.+.+
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4556777899999999999999999884
No 417
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.90 E-value=0.00061 Score=44.71 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=17.3
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 029978 22 LSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~ 40 (184)
.+|+|++|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3899999999999999976
No 418
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.90 E-value=0.00019 Score=49.71 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 029978 21 ELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~ 40 (184)
.|+|.|++||||||+++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999986
No 419
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.90 E-value=0.0014 Score=48.31 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=27.1
Q ss_pred HHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
....|...+.....-.+.+.|++|+|||+|+..+..
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 444566555433457899999999999999998873
No 420
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.88 E-value=0.00088 Score=46.84 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=19.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+.--|.++|+|||||+|....+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 33446789999999999999887
No 421
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.86 E-value=0.00058 Score=53.36 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=21.6
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...+ -.++|+|++|+|||||++.+.+
T Consensus 26 ~i~~-e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 26 DFDE-LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp ECCS-SEEEEECCTTSSHHHHHHHHHH
T ss_pred EEcc-ceEEEECCCCCcHHHHHHHHhc
Confidence 3445 5679999999999999999873
No 422
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.86 E-value=0.00055 Score=51.03 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
-.++++|++|+|||||++.+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999984
No 423
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.86 E-value=0.00094 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHcC
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
++-.++++|++|+|||||++.+.+-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4456799999999999999999853
No 424
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.86 E-value=0.0014 Score=42.57 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=26.6
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+.+....... ......|.+.|++|+|||++++.+...
T Consensus 11 ~~~~~~~~~~-a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 11 NQYRRRLQQL-SETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHH-TTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHH-hCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3444444333 345567999999999999999999743
No 425
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.85 E-value=0.00034 Score=56.08 Aligned_cols=28 Identities=25% Similarity=0.597 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-.++++|++|+|||||++.+.+
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhc
Confidence 4456677899999999999999998874
No 426
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.84 E-value=0.0014 Score=46.68 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
....+.+.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999974
No 427
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.83 E-value=0.00073 Score=53.69 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++-.++|+|++|+|||||++.+.+-
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667899999999999999999864
No 428
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.83 E-value=0.00035 Score=56.14 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=23.6
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-.++++|++|+|||||++.+.+
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3455667899999999999999998874
No 429
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.82 E-value=0.00055 Score=50.70 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~ 42 (184)
-++|+|+.|+|||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 3579999999999999999954
No 430
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.82 E-value=0.0017 Score=46.72 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.6
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
......+.+.|++|+|||++++.+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 45567899999999999999999974
No 431
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.81 E-value=0.0061 Score=44.67 Aligned_cols=82 Identities=10% Similarity=0.124 Sum_probs=47.8
Q ss_pred CEEEEEEeCCCcccchHhHHHhccCCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCccCcCCHhH
Q 029978 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPEALSKED 141 (184)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~~~~ 141 (184)
.+.+.++|+|+...... ....+..+|.+++++..+. .++.........+.......+.+++ +|.|+.+.. ...++
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~~~~~ 231 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTANDF-DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDR 231 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSSH-HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHH
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--HHHHH
Confidence 46788999987533211 1344577899999887643 2344444444444433233566765 899999843 22455
Q ss_pred HHHHcCC
Q 029978 142 LMEQMGL 148 (184)
Q Consensus 142 ~~~~~~~ 148 (184)
+.+.++.
T Consensus 232 ~~~~~g~ 238 (307)
T 3end_A 232 FCKETNF 238 (307)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 5555543
No 432
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.81 E-value=0.0009 Score=45.89 Aligned_cols=24 Identities=17% Similarity=0.466 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
....|+++|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999874
No 433
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.80 E-value=0.00061 Score=57.54 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=25.3
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcCCC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATGGY 44 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~~~ 44 (184)
+...++-.++|+|++|+|||||++.+.++..
T Consensus 456 l~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 456 LRLKRARRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3445667789999999999999999986543
No 434
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.80 E-value=0.0018 Score=47.44 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++-.++++|++|+||||++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45578999999999999999886
No 435
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.79 E-value=0.00082 Score=54.16 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++-.++|+|++|+|||||++.+.+-
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45567899999999999999999864
No 436
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.0012 Score=53.27 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++-.++++|++|+|||||++.+.+-
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 44567899999999999999999853
No 437
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.78 E-value=0.00076 Score=53.57 Aligned_cols=26 Identities=19% Similarity=0.426 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
.++-.++|+|++|+|||||++.+.+-
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44556899999999999999999853
No 438
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.77 E-value=0.00077 Score=47.47 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=18.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++.-|++.|++||||||+++.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 467889999999999999999886
No 439
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.76 E-value=0.0023 Score=44.63 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.++|.|++|+||||+++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999874
No 440
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.75 E-value=0.001 Score=46.95 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+...|+|+|++|+||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998873
No 441
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.75 E-value=0.00085 Score=47.26 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++--++|+|++|+|||||+..+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4566789999999999999999985
No 442
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.73 E-value=0.0011 Score=45.92 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.++--++++|++|+|||||+..+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566789999999999999999985
No 443
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.70 E-value=0.0013 Score=53.05 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
..++-.++|+|++|+|||||++.+.+-
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 356667899999999999999999853
No 444
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.70 E-value=0.00058 Score=49.94 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=18.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+...|+|.|++||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998863
No 445
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.70 E-value=0.0012 Score=48.24 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=23.3
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+-..++--++|+|++|+|||||+..+.+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3446667789999999999999998873
No 446
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.69 E-value=0.001 Score=50.23 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=19.9
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHH
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
...++ .+|+|++|+|||||++.+.
T Consensus 21 ~~~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 21 FQSGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CCSEE-EEEECCTTSSHHHHHHHHH
T ss_pred cCCCe-EEEECCCCCCHHHHHHHHH
Confidence 34555 5699999999999999987
No 447
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.69 E-value=0.0028 Score=47.50 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=25.8
Q ss_pred HHHHHHHHHhh-ccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 4 WEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.+.++..+... ...+..+|+++|++|+||||+.+.+.
T Consensus 8 ~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 8 ADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp HHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHH
Confidence 34455555332 22344679999999999999998776
No 448
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.68 E-value=0.001 Score=47.48 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...++++|++|+||||+++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34689999999999999999974
No 449
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.68 E-value=0.0023 Score=46.85 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.....+.+.|++|+|||++++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999998665
No 450
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.68 E-value=0.0014 Score=49.47 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcc-CCce--EEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLFF-KQEM--ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~-~~~~--~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+..++..... ...- .++|.|++|+|||||++.+.+
T Consensus 27 ~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 27 QQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp HHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 345555544322 2234 789999999999999999874
No 451
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.67 E-value=0.0018 Score=47.54 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
....-.+.+.|++|+|||+|++.+.+
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHH
Confidence 35556799999999999999999984
No 452
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.66 E-value=0.0018 Score=46.84 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...-.+.+.|++|+|||+|++.+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4556799999999999999999974
No 453
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.63 E-value=0.00032 Score=61.39 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=24.4
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.++++-+|+|+|++|+|||||++.+.+
T Consensus 1100 l~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1100 FSVEPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEECTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhc
Confidence 4556778899999999999999999873
No 454
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.61 E-value=0.0003 Score=53.93 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=21.7
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+...++ .++|+|++|+|||||++.+.
T Consensus 56 l~~~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 56 LELGGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EECCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHH
Confidence 344567 78999999999999998874
No 455
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.59 E-value=0.0015 Score=45.98 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
..++++++|+|||||||+...+.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 35789999999999999999886
No 456
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.57 E-value=0.0016 Score=47.60 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..|++.|++||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999974
No 457
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0026 Score=49.04 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=24.0
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+-.+..--+.+.||||+|||+|++.+.+
T Consensus 199 ~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 199 EQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp HHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 333445556799999999999999999983
No 458
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.56 E-value=0.0018 Score=47.74 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++-.++++|++|+||||++..+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 34568999999999999999887
No 459
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.55 E-value=0.0016 Score=44.72 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.|+|.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 460
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.55 E-value=0.0014 Score=47.54 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++--++|+|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445689999999999999998874
No 461
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.50 E-value=0.0023 Score=48.00 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=23.4
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
-..++--+.|+|++|+|||||+..+...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456667899999999999999999853
No 462
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0019 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC
Q 029978 21 ELSLIGLQNAGKTSLVNVIATGG 43 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~~~ 43 (184)
.++|+|++|+|||||++.+.+-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999998643
No 463
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.49 E-value=0.002 Score=47.11 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
....+.+.|+||+|||+|++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346678889999999999999984
No 464
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.43 E-value=0.0019 Score=44.56 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=17.1
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 029978 22 LSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~ 40 (184)
.+|+|++|+||||++..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4799999999999999875
No 465
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.43 E-value=0.00084 Score=56.72 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=23.7
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHcC
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+....+-.++|+|++|+|||||++.+.+-
T Consensus 694 l~I~~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 694 FQCSLSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEETTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33455667999999999999999999853
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.42 E-value=0.0026 Score=43.81 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHcC
Q 029978 19 EMELSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~~ 42 (184)
+..|+|+|++|+|||||+..|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999843
No 467
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.40 E-value=0.0018 Score=42.06 Aligned_cols=36 Identities=8% Similarity=0.041 Sum_probs=25.2
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+....... ......|.+.|++|+|||++++.+..
T Consensus 14 ~~l~~~~~~~-~~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 14 QEMNREVEAA-AKRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp HHHHHHHHHH-HTCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred HHHHHHHHHH-hCCCCcEEEECCCCccHHHHHHHHHH
Confidence 3344444332 23456799999999999999998863
No 468
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.40 E-value=0.0019 Score=47.06 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.-.+.+.|++|+|||++++.+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 46789999999999999999984
No 469
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.40 E-value=0.002 Score=45.41 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=19.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++--+++.|++|+|||||+..+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 445567999999999999987775
No 470
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.39 E-value=0.0015 Score=57.21 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=24.0
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..+++-.++|+|++|||||||++.+.+
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTT
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhcc
Confidence 4456777899999999999999998873
No 471
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.39 E-value=0.0013 Score=52.34 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=23.1
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 16 FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 16 ~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..++..++++|++|||||||++.+.+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHH
Confidence 45778899999999999999999874
No 472
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.38 E-value=0.0049 Score=46.38 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=26.0
Q ss_pred HHHHHHHHhhc-cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+..++.... ....-.+.|.|++|+||||+++.+..
T Consensus 30 ~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 30 RDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 34444554432 23345789999999999999999874
No 473
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0029 Score=46.85 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=26.8
Q ss_pred HHHHHHHh-hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 6 AFLNWLRS-LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 6 ~~~~~~~~-~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+..++.. ......-.+.|.|+||+|||++++.+..
T Consensus 31 ~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 31 RIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp HHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 44444444 2345667889999999999999999874
No 474
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.37 E-value=0.0027 Score=44.89 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..|++.|..||||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999874
No 475
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.36 E-value=0.0011 Score=54.16 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=19.9
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHH
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVI 39 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l 39 (184)
.+.++-.++|+|++|||||||++.+
T Consensus 344 ~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 344 KIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEETTSEEEEECSTTSSHHHHHTTT
T ss_pred EecCCCEEEEEeeCCCCHHHHHHHH
Confidence 3345566899999999999999754
No 476
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.36 E-value=0.0046 Score=46.01 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.+.+.|++|+||||+++.+.+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999874
No 477
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.0037 Score=48.24 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=24.4
Q ss_pred HhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 12 RSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 12 ~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..+-.+..-.|.+.||||+|||+|++.+.+
T Consensus 208 ~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 208 KDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp HHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 334445567899999999999999999983
No 478
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.33 E-value=0.0024 Score=48.06 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=21.2
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...++ -.+|+|++|+||||+++.+..
T Consensus 23 ~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 23 NFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp ECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 33455 569999999999999999873
No 479
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.32 E-value=0.0023 Score=49.19 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...-|+++|++||||||+.+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346688999999999999999873
No 480
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.32 E-value=0.0021 Score=47.46 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.-.+.+.|++|+|||||++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35689999999999999999874
No 481
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.29 E-value=0.0014 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=19.3
Q ss_pred hccCCceEEEEEcCCCCChHHHH
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLV 36 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli 36 (184)
+..+++-.++|+|++|+|||||+
T Consensus 39 l~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 39 VEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHh
Confidence 44456677999999999999996
No 482
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.28 E-value=0.0035 Score=46.65 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 029978 21 ELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 21 ~i~iiG~~g~GKStli~~l~~ 41 (184)
.+.+.|++|+||||+++.+.+
T Consensus 60 ~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999874
No 483
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.28 E-value=0.0027 Score=47.72 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
...-.+.|.|++|+||||+++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999873
No 484
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.27 E-value=0.0016 Score=56.95 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=0.0
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 13 SLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++..+++-.++++|++|+|||||++.+.+
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
No 485
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.26 E-value=0.0048 Score=45.78 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=25.7
Q ss_pred HHHHHHHHhhc--cCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 5 EAFLNWLRSLF--FKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~--~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+.+..++.... ....-.+.+.|++|+|||++++.+..
T Consensus 39 ~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 39 KNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp HHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 34444444332 23335689999999999999999974
No 486
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.26 E-value=0.0015 Score=46.82 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHc
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
++...|+|.|..||||||+++.|..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998873
No 487
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.23 E-value=0.0071 Score=43.53 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=25.1
Q ss_pred HHHHHHhhccCC---ceEEEEEcCCCCChHHHHHHHHc
Q 029978 7 FLNWLRSLFFKQ---EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 7 ~~~~~~~~~~~~---~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..|+..+...+ .-.+.+.||||+|||.|+..+..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 334444444433 33589999999999999999984
No 488
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.22 E-value=0.0024 Score=47.29 Aligned_cols=23 Identities=17% Similarity=0.518 Sum_probs=19.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++ -.+|+|++|+|||||+..+.
T Consensus 23 ~~g-~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 23 SDR-VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp CSS-EEEEECCTTTCSTHHHHHHH
T ss_pred CCC-cEEEECCCCCcHHHHHHHHH
Confidence 445 45899999999999999987
No 489
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.22 E-value=0.0026 Score=47.73 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHc
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
..-.++|.|++|+|||||++.+.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999874
No 490
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.22 E-value=0.0027 Score=47.35 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
..|+|.|++|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998873
No 491
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.22 E-value=0.0025 Score=44.21 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+..|+|+|++||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998874
No 492
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.21 E-value=0.0066 Score=44.95 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHc
Q 029978 19 EMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 19 ~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.-.+.+.|++|+|||+|++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 35789999999999999999984
No 493
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.20 E-value=0.0036 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
+.-.++++|++|+||||++..+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44568999999999999999887
No 494
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.18 E-value=0.0029 Score=47.22 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=19.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q 029978 17 KQEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 17 ~~~~~i~iiG~~g~GKStli~~l~ 40 (184)
.++++ +|+|++|+||||++..+.
T Consensus 22 ~~~~~-~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 22 KEGIN-LIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CSEEE-EEECCTTSSHHHHHHHHH
T ss_pred CCCeE-EEECCCCCCHHHHHHHHH
Confidence 34455 799999999999999874
No 495
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.18 E-value=0.0028 Score=50.23 Aligned_cols=25 Identities=16% Similarity=0.042 Sum_probs=21.2
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHH
Q 029978 15 FFKQEMELSLIGLQNAGKTSLVNVI 39 (184)
Q Consensus 15 ~~~~~~~i~iiG~~g~GKStli~~l 39 (184)
...++-.++|+|++|+|||||++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 3456667899999999999999995
No 496
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.18 E-value=0.0073 Score=48.06 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
.+.+.+++..-.....--|+|+|.+|+|||||+..+.+
T Consensus 137 ~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 137 VDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 34566666443222345678999999999999999985
No 497
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0057 Score=47.22 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=23.5
Q ss_pred hccCCceEEEEEcCCCCChHHHHHHHHc
Q 029978 14 LFFKQEMELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~iiG~~g~GKStli~~l~~ 41 (184)
+-.+..--|.+.||||+|||+|++.+.+
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3345567899999999999999999983
No 498
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.16 E-value=0.0035 Score=42.45 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 029978 22 LSLIGLQNAGKTSLVNVIATG 42 (184)
Q Consensus 22 i~iiG~~g~GKStli~~l~~~ 42 (184)
+.|+|.+||||||+..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999843
No 499
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.15 E-value=0.0042 Score=45.40 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 029978 20 MELSLIGLQNAGKTSLVNVIAT 41 (184)
Q Consensus 20 ~~i~iiG~~g~GKStli~~l~~ 41 (184)
-.++++|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4789999999999999999874
No 500
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.15 E-value=0.0042 Score=43.23 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q 029978 18 QEMELSLIGLQNAGKTSLVNVIA 40 (184)
Q Consensus 18 ~~~~i~iiG~~g~GKStli~~l~ 40 (184)
++.-|++.|++||||||+++.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHH
Confidence 46778999999999999999986
Done!