BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029982
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
PE=1 SV=1
Length = 178
Score = 166 bits (420), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 93/151 (61%), Positives = 114/151 (75%), Gaps = 7/151 (4%)
Query: 20 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 79
MK +GK VK K E +KPV+DR GKRKA A + + + T+ K AKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTK-EALKPVDDRKVGKRKAP--AEKPTKRETRKEKKAKKDPNKPKRAP 57
Query: 80 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKL 139
SAFFVFLE+FR +K+E+PNVKAVSAVGKAGG+KWKS++ AEKAP+E KAAKRK +YEK
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQ 117
Query: 140 MTAYNKKQESTEDEDEEESEKSKSEVHDDDD 170
M AYNK E D ESEKS+SE++D+D+
Sbjct: 118 MDAYNKNLEEGSD----ESEKSRSEINDEDE 144
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 92/111 (82%), Gaps = 1/111 (0%)
Query: 62 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAE 121
TK K A KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+ VGKAGG+KWK LT AE
Sbjct: 23 TKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAE 82
Query: 122 KAPFEAKAAKRKLDYEKLMTAYNKKQESTEDEDEEESEKSKSEVHDDDDDE 172
KAPF +KA KRK +YEK + AYNKKQ + +EEES+KS+SEV+DDD+D+
Sbjct: 83 KAPFISKAEKRKQEYEKNLQAYNKKQAAGA-AEEEESDKSRSEVNDDDEDQ 132
>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
PE=1 SV=1
Length = 141
Score = 136 bits (343), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 73/109 (66%), Positives = 86/109 (78%), Gaps = 1/109 (0%)
Query: 58 SNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 117
+ K K K A KDPNKPKRP SAFFVF+E+FR YK+EHP K+V+AVGKAGGEKWKSL
Sbjct: 18 TKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSL 77
Query: 118 TDAEKAPFEAKAAKRKLDYEKLMTAYNKKQESTEDEDEEESEKSKSEVH 166
+D+EKAP+ AKA KRK++YEK M AYNKK E ED EES+KS SEV+
Sbjct: 78 SDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKED-EESDKSVSEVN 125
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 127 bits (318), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/104 (63%), Positives = 79/104 (75%), Gaps = 5/104 (4%)
Query: 44 AAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 103
A K+ A KA + + K A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP KAV
Sbjct: 18 AVNKKGAATKARKPAGK-----GKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAV 72
Query: 104 SAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQ 147
SAVGKA G KWK+++DAEKAP+ AK+ KRK++YEK M AYNKKQ
Sbjct: 73 SAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQ 116
>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
PE=1 SV=1
Length = 144
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 89/119 (74%), Gaps = 1/119 (0%)
Query: 48 RKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 107
R + L ++ K K+A KDPNKPKRP SAFFVF+E+FR+ +K+E+P K+V+ VG
Sbjct: 11 RSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVG 70
Query: 108 KAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQESTEDEDEEESEKSKSEVH 166
KA G+KWKSL+D+EKAP+ AKA KRK++YEK + AYNKK E ED EES+KS SEV+
Sbjct: 71 KAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKED-EESDKSVSEVN 128
>sp|Q42344|HMGB4_ARATH High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4
PE=1 SV=1
Length = 138
Score = 120 bits (301), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/118 (54%), Positives = 85/118 (72%), Gaps = 5/118 (4%)
Query: 66 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPF 125
K KKDPN+PKRPPSAFFVFLE+FRK + +PN K+V+ VGKA G +WK++TD +KAP+
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPY 85
Query: 126 EAKAAKRKLDYEKLMTAYNKKQESTEDEDEEESEKSKSEVHDDDDDEELEEEDEEEDD 183
AKA RK +Y K + YN K S + +E++S+KSKSEV DE + EE+ E+DD
Sbjct: 86 VAKAESRKTEYIKNVQQYNLKLASGTNREEDDSDKSKSEV-----DEAVSEEEAEDDD 138
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 79/97 (81%), Gaps = 2/97 (2%)
Query: 70 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 129
KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE+WKSL++ EKAP+ +A
Sbjct: 40 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRA 99
Query: 130 AKRKLDYEKLMTAYNKKQESTEDEDEEESEKSKSEVH 166
K+K +YE + AYNKK E +DEE S+KSKSEV+
Sbjct: 100 LKKKEEYEITLQAYNKKLEGK--DDEEGSDKSKSEVN 134
>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
Length = 157
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 85/132 (64%), Gaps = 18/132 (13%)
Query: 20 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRP 78
MK + KGA K D VK S+ + K K K A KDPNKPKR
Sbjct: 1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRA 44
Query: 79 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEK 138
PSAFFVF+EEFRK +K+++P K+V+AVGKA G++WKSL++++KAP+ AKA K KL+Y K
Sbjct: 45 PSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNK 104
Query: 139 LMTAYNKKQEST 150
+ AYN K EST
Sbjct: 105 AIAAYN-KGEST 115
>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
Length = 161
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 62/75 (82%)
Query: 71 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 130
DPNKPKR PSAFFVF+ EFR+ +KQ++P K+V+AVGKA GE+WKSL+++EKAP+ AKA
Sbjct: 38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKAN 97
Query: 131 KRKLDYEKLMTAYNK 145
K K +Y K + AYNK
Sbjct: 98 KLKGEYNKAIAAYNK 112
>sp|O49597|HMGB5_ARATH High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5
PE=2 SV=1
Length = 125
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 64/94 (68%), Gaps = 4/94 (4%)
Query: 55 SRSSNKRTK----NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG 110
SRS++ R K V KDPN+PK+PPS FFVFL++FRK + +P+ K+V VG+A
Sbjct: 10 SRSTDDRLKVRGNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAA 69
Query: 111 GEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 144
G+KWK++T+ E+APF AK+ +K +Y M YN
Sbjct: 70 GKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYN 103
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nhp6
PE=3 SV=1
Length = 104
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Query: 57 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 116
S+ +TK V+ KKDPN PKR SA+ F E R ++E+P + + VGK GE+WK+
Sbjct: 7 STRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGI-SFGQVGKMLGERWKA 65
Query: 117 LTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQESTEDEDEEES 158
L+D+E+ P+E KAA K YE +YN Q DEDEEES
Sbjct: 66 LSDSERRPYEEKAAADKKRYEDEKASYNAAQ----DEDEEES 103
>sp|O64702|HMG14_ARATH High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14
PE=2 SV=2
Length = 151
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
Query: 75 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKL 134
PK+P +AFF FL++FRK Y++E+P+VK++ +GK GEKWK++T EK + A +++
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKRE 122
Query: 135 DYEKLMTAYNKKQES-TEDEDEEESEKS 161
++ + MT Y K+ ES DE E +S+ S
Sbjct: 123 EFHRAMTEYTKRMESGAHDESETDSDYS 150
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 70 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 129
KDPN PKRP SAFF+F +FR K E P + ++ V K GEKW +LT +K P+E KA
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLTAEDKVPYEKKA 147
Query: 130 AKRKLDYEKLMTAYNKK 146
++ K YEK +TAY K
Sbjct: 148 SRLKEKYEKDITAYRNK 164
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 70 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFEAK 128
KDP KP+ S++ F++ R+ +K++HP S K E+WK+++ EK FE
Sbjct: 3 KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 129 AAKRKLDYEKLMTAY 143
A K+ YE+ M +Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 65 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAP 124
K AKKDPN PKR SA+ F E R+ ++E+P + + VGK GE+WK+L + ++AP
Sbjct: 14 TKRAKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKLLGERWKALNEKQRAP 72
Query: 125 FEAKAAKRKLDYEKLMTAYNKKQESTE 151
+EAKAA K YE AYN QE E
Sbjct: 73 YEAKAAADKKRYEDEKQAYNADQEEEE 99
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 71 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 130
DPN PKRPPSAFF+F EFR K +P + ++ V K GE W +L+D EK P+ KAA
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 131 KRKLDYEKLMTAYNKK 146
K K YEK + Y K
Sbjct: 148 KLKEKYEKDVADYKSK 163
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 80 SAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEK 138
SA+ F++ R+ +K+++P V A K E+WK+++ EKA F+ A K+ Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 139 LMTAY 143
M Y
Sbjct: 74 EMKDY 78
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nhp-6 PE=3 SV=1
Length = 103
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 58/93 (62%), Gaps = 7/93 (7%)
Query: 66 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPF 125
+ AKKDPN PKR SA+ F E R+ ++E+P V + VGK GE+WK+L+D ++AP+
Sbjct: 17 RRAKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSDKQRAPY 75
Query: 126 EAKAAKRKLDYEKLMTAYNKKQESTEDEDEEES 158
EAKAA K YE AYN + DEEES
Sbjct: 76 EAKAAADKKRYEDEKQAYNA------EADEEES 102
>sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7
PE=1 SV=1
Length = 241
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 60 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 119
K+T + K + NKPKRP +AFF+F+ +FRK +K EH A A K GGEKWKSLT+
Sbjct: 100 KKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDA-AKIGGEKWKSLTE 158
Query: 120 AEKAPFEAKAAKRKLDYEKLM 140
EK + KAA+ K +Y K +
Sbjct: 159 EEKKVYLDKAAELKAEYNKSL 179
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 71 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 130
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D EK P+ KAA
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAA 146
Query: 131 KRKLDYEKLMTAYNKK 146
K K YEK + Y K
Sbjct: 147 KLKEKYEKDVADYKSK 162
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 69 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAK 128
KKDPN PKRPPS FF+F EF K +P + + V K GE WK+L D+EK P+ +
Sbjct: 86 KKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGI-PIGDVAKKLGEMWKNLNDSEKQPYITQ 144
Query: 129 AAKRKLDYEKLMTAYNKKQES 149
AAK K YEK + Y K +S
Sbjct: 145 AAKLKEKYEKDVAVYKSKGKS 165
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 71 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 130
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L D+EK P+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 131 KRKLDYEKLMTAYNKK 146
K K YEK + Y K
Sbjct: 148 KLKEKYEKDVADYKSK 163
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 80 SAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEK 138
SA+ F++ R+ +K+++P V A K E+WK+++ EK+ F+ A K+ Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 139 LMTAYN 144
M Y
Sbjct: 74 EMKDYG 79
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 71 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 130
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+EK P+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 131 KRKLDYEKLMTAYNKK 146
K K YEK + Y K
Sbjct: 148 KLKEKYEKDVADYKSK 163
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 80 SAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEK 138
SA+ F++ R+ +K+++P V A K E+WK+++ EK+ F+ A K+ Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 139 LMTAYN 144
M Y
Sbjct: 74 EMKDYG 79
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 71 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 130
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D EK P+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYVTKAA 147
Query: 131 KRKLDYEKLMTAYNKK 146
K K YEK + Y K
Sbjct: 148 KLKEKYEKDVADYKSK 163
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 80 SAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEK 138
SA+ F++ R+ +K+++P V A K E+WK+++ EK+ F+ A K+ Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 139 LMTAYN 144
M Y
Sbjct: 74 EMKDYG 79
>sp|P26584|HMGB2_CHICK High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2
Length = 207
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 71 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 130
DPN PKRPPSAFF+F E R K +HP + ++ K GE W +K P+E KAA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMWSEQLAKDKQPYEQKAA 149
Query: 131 KRKLDYEKLMTAYNKKQES 149
K K YEK + AY K +S
Sbjct: 150 KLKEKYEKDIAAYRAKSKS 168
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDAEKAPFE 126
K DPNKP+ S++ F++ R+ +K++HP+ A + E+WK+++ EK FE
Sbjct: 2 GKGDPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K Y++ M Y
Sbjct: 62 EMAKGDKARYDREMKNY 78
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 69 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAK 128
KKDPN PKR SA+ F + R ++E+P + + VGK GEKWKSL+D E+ P+E K
Sbjct: 21 KKDPNAPKRGLSAYMFFANDNRDKVREENPGI-SFGQVGKMLGEKWKSLSDKERKPYEDK 79
Query: 129 AAKRKLDYEKLMTAYNKKQESTEDED 154
AA K YE AY K E+ EDE+
Sbjct: 80 AAADKKRYEDEKAAY-KAGEAEEDEE 104
>sp|Q6CC79|NHP6_YARLI Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NHP6 PE=3 SV=1
Length = 103
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 71 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 130
DPN PKR SA+ F + R + ++P + A VGKA GEKWK+LTDAEK P+E KA
Sbjct: 21 DPNAPKRALSAYMFFANDNRDAIRADNPGI-AFGQVGKALGEKWKTLTDAEKVPYEEKAT 79
Query: 131 KRKLDYEKLMTAYNKKQESTEDEDEE 156
K YE AY K + E ++EE
Sbjct: 80 ADKKRYEDEKAAY--KANAAEFDEEE 103
>sp|P52925|HMGB2_RAT High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2
SV=2
Length = 210
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 73 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKR 132
N PKRPPSAFF+F E R K EHP + ++ K GE W + +K P+E KAAK
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 133 KLDYEKLMTAYNKKQES 149
K YEK + AY K +S
Sbjct: 152 KEKYEKDIAAYRAKGKS 168
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDAEKAPFE 126
K DPNKP+ S++ F++ R+ +K++HP+ A K E+WK+++ EK+ FE
Sbjct: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K Y++ M Y
Sbjct: 62 DLAKSDKARYDREMKNY 78
>sp|P26583|HMGB2_HUMAN High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2
Length = 209
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 73 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKR 132
N PKRPPSAFF+F E R K EHP + ++ K GE W + +K P+E KAAK
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 133 KLDYEKLMTAYNKKQES 149
K YEK + AY K +S
Sbjct: 152 KEKYEKDIAAYRAKGKS 168
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDAEKAPFE 126
K DPNKP+ S++ F++ R+ +K++HP+ A K E+WK+++ EK+ FE
Sbjct: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K Y++ M Y
Sbjct: 62 DMAKSDKARYDREMKNY 78
>sp|P40673|HMGB2_BOVIN High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3
Length = 209
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 73 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKR 132
N PKRPPSAFF+F E R K EHP + ++ K GE W + +K P+E KAAK
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 133 KLDYEKLMTAYNKKQES 149
K YEK + AY K +S
Sbjct: 152 KEKYEKDIAAYRAKGKS 168
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDAEKAPFE 126
K DPNKP+ S++ F++ R+ +K++HP+ A K E+WK+++ EK+ FE
Sbjct: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K Y++ M Y
Sbjct: 62 DMAKSDKARYDREMKNY 78
>sp|P17741|HMGB2_PIG High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2
Length = 210
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 73 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKR 132
N PKRPPSAFF+F E R K EHP + ++ K GE W + +K P+E KAAK
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 133 KLDYEKLMTAY 143
K YEK + AY
Sbjct: 152 KEKYEKDIAAY 162
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDAEKAPFE 126
K DPNKP+ S++ F++ R+ +K++HP+ A K E+WK+++ EK+ FE
Sbjct: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K Y++ M Y
Sbjct: 62 DMAKSDKARYDREMKNY 78
>sp|P30681|HMGB2_MOUSE High mobility group protein B2 OS=Mus musculus GN=Hmgb2 PE=1 SV=3
Length = 210
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 73 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKR 132
N PKRPPSAFF+F E R K EHP + ++ K GE W + +K P+E KAAK
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 133 KLDYEKLMTAYNKKQES 149
K YEK + AY K +S
Sbjct: 152 KEKYEKDIAAYRAKGKS 168
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDAEKAPFE 126
K DPNKP+ S++ F++ R+ +K++HP+ A K E+WK+++ EK+ FE
Sbjct: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K Y++ M Y
Sbjct: 62 DLAKSDKARYDREMKNY 78
>sp|Q6CVH3|NHP6_KLULA Non-histone chromosomal protein 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NHP6 PE=3 SV=1
Length = 93
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 63 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEK 122
K + KKDPN PKR SA+ F E R + + E+P + VG+ GEKWK+L + EK
Sbjct: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGI-TFGQVGRILGEKWKALNEDEK 64
Query: 123 APFEAKAAKRKLDYE 137
AP+EAKA K YE
Sbjct: 65 APYEAKAEADKKRYE 79
>sp|P11633|NHP6B_YEAST Non-histone chromosomal protein 6B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6B PE=1 SV=3
Length = 99
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 69 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAK 128
KKDPN PKR SA+ F E R + + E+P+V VG+ GE+WK+LT EK P+E+K
Sbjct: 21 KKDPNAPKRGLSAYMFFANENRDIVRSENPDV-TFGQVGRILGERWKALTAEEKQPYESK 79
Query: 129 AAKRKLDYEKLMTAYN 144
A K YE YN
Sbjct: 80 AQADKKRYESEKELYN 95
>sp|Q75B82|NHP6_ASHGO Non-histone chromosomal protein 6 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NHP6
PE=3 SV=1
Length = 94
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 71 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 130
DPN PKR SA+ F E R + + E+P + + VG+ GEKWK+L+D EK P+EAKA
Sbjct: 17 DPNAPKRAMSAYMFFANENRDIVRAENPGI-SFGQVGRVLGEKWKALSDDEKQPYEAKAE 75
Query: 131 KRKLDYEKLMTAYN 144
K YE YN
Sbjct: 76 ADKKRYESEKELYN 89
>sp|P11632|NHP6A_YEAST Non-histone chromosomal protein 6A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6A PE=1 SV=1
Length = 93
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 71 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 130
DPN PKR SA+ F E R + + E+P++ VGK GEKWK+LT EK P+EAKA
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALTPEEKQPYEAKAQ 75
Query: 131 KRKLDYEKLMTAYN 144
K YE YN
Sbjct: 76 ADKKRYESEKELYN 89
>sp|Q9SUP7|HMGB6_ARATH High mobility group B protein 6 OS=Arabidopsis thaliana GN=HMGB6
PE=2 SV=1
Length = 456
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 71 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 130
DP KPK P SAF V+ E R ++E+ K+V V K GE+WK+L+D +KAP+E A
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREEN---KSVVEVAKITGEEWKNLSDKKKAPYEKVAK 307
Query: 131 KRKLDYEKLMTAYNKKQE 148
K K Y + M Y + +E
Sbjct: 308 KNKETYLQAMEEYKRTKE 325
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 71 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 130
DPNKPK+P S++F+F ++ RK +E P + V KWK L++ EK + KAA
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNNAT-VTALISLKWKELSEEEKQVYNGKAA 433
Query: 131 KRKLDYEKLMTAYNKKQEST 150
K Y+K + AYNKK +T
Sbjct: 434 KLMEAYKKEVEAYNKKSAAT 453
>sp|P07156|HMGB1_CRIGR High mobility group protein B1 (Fragment) OS=Cricetulus griseus
GN=HMGB1 PE=1 SV=1
Length = 180
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 46 GKRKAVLKASRSSNKR--------TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 97
GK + + KA ++ +R K KDPN PKRPPSAFF+F E+R K EH
Sbjct: 23 GKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 82
Query: 98 PNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146
P + ++ V K GE W + +K P+E KAAK K YEK + AY K
Sbjct: 83 PGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 130
>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
SV=2
Length = 215
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 46 GKRKAVLKASRSSNKR--------TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 97
GK + + KA ++ +R K KDPN PKRPPSAFF+F E+R K EH
Sbjct: 58 GKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 117
Query: 98 PNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146
P + ++ V K GE W + +K P+E KAAK K YEK + AY K
Sbjct: 118 PGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 126
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
Length = 215
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 46 GKRKAVLKASRSSNKR--------TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 97
GK + + KA ++ +R K KDPN PKRPPSAFF+F E+R K EH
Sbjct: 58 GKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 117
Query: 98 PNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146
P + ++ V K GE W + +K P+E KAAK K YEK + AY K
Sbjct: 118 PGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 126
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|P63158|HMGB1_MOUSE High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2
Length = 215
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 46 GKRKAVLKASRSSNKR--------TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 97
GK + + KA ++ +R K KDPN PKRPPSAFF+F E+R K EH
Sbjct: 58 GKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 117
Query: 98 PNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146
P + ++ V K GE W + +K P+E KAAK K YEK + AY K
Sbjct: 118 PGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 126
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|Q4R844|HMGB1_MACFA High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2
SV=3
Length = 215
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 46 GKRKAVLKASRSSNKR--------TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 97
GK + + KA ++ +R K KDPN PKRPPSAFF+F E+R K EH
Sbjct: 58 GKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 117
Query: 98 PNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146
P + ++ V K GE W + +K P+E KAAK K YEK + AY K
Sbjct: 118 PGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 126
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3
Length = 215
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 46 GKRKAVLKASRSSNKR--------TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 97
GK + + KA ++ +R K KDPN PKRPPSAFF+F E+R K EH
Sbjct: 58 GKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 117
Query: 98 PNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146
P + ++ V K GE W + +K P+E KAAK K YEK + AY K
Sbjct: 118 PGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 126
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|Q08IE6|HMGB1_HORSE High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3
Length = 215
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 46 GKRKAVLKASRSSNKR--------TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 97
GK + + KA ++ +R K KDPN PKRPPSAFF+F E+R K EH
Sbjct: 58 GKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 117
Query: 98 PNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146
P + ++ V K GE W + +K P+E KAAK K YEK + AY K
Sbjct: 118 PGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 126
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|Q6YKA4|HMGB1_CANFA High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2
SV=3
Length = 215
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 46 GKRKAVLKASRSSNKR--------TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 97
GK + + KA ++ +R K KDPN PKRPPSAFF+F E+R K EH
Sbjct: 58 GKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 117
Query: 98 PNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146
P + ++ V K GE W + +K P+E KAAK K YEK + AY K
Sbjct: 118 PGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 126
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|B1MTB0|HMGB1_CALMO High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3
SV=1
Length = 215
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 46 GKRKAVLKASRSSNKR--------TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 97
GK + + KA ++ +R K KDPN PKRPPSAFF+F E+R K EH
Sbjct: 58 GKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 117
Query: 98 PNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146
P + ++ V K GE W + +K P+E KAAK K YEK + AY K
Sbjct: 118 PGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 126
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|B0CM99|HMGB1_CALJA High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3
SV=1
Length = 215
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 46 GKRKAVLKASRSSNKR--------TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 97
GK + + KA ++ +R K KDPN PKRPPSAFF+F E+R K EH
Sbjct: 58 GKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 117
Query: 98 PNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146
P + ++ V K GE W + +K P+E KAAK K YEK + AY K
Sbjct: 118 PGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 126
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|P10103|HMGB1_BOVIN High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3
Length = 215
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 46 GKRKAVLKASRSSNKR--------TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 97
GK + + KA ++ +R K KDPN PKRPPSAFF+F E+R K EH
Sbjct: 58 GKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 117
Query: 98 PNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146
P + ++ V K GE W + +K P+E KAAK K YEK + AY K
Sbjct: 118 PGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 126
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
Length = 215
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 46 GKRKAVLKASRSSNKR--------TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 97
GK + + KA ++ +R K KDPN PKRPPSAFF+F E+R K EH
Sbjct: 58 GKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 117
Query: 98 PNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146
P + ++ V K GE W + +K P+E KAAK K YEK + AY K
Sbjct: 118 PGL-SIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAYRAK 165
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 126
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 127 AKAAKRKLDYEKLMTAY 143
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|P0CO24|NHP6_CRYNJ Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=NHP6 PE=3 SV=1
Length = 116
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 66 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPF 125
K KKDPNKPKR SA+ F++++R+ K E+P VGK G KW+ + + EK P+
Sbjct: 19 KRTKKDPNKPKRALSAYMFFVQDYRERIKTENPEA-TFGDVGKLLGIKWREMNENEKKPY 77
Query: 126 EAKA 129
EAKA
Sbjct: 78 EAKA 81
>sp|P0CO25|NHP6_CRYNB Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=NHP6 PE=3 SV=1
Length = 116
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 66 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPF 125
K KKDPNKPKR SA+ F++++R+ K E+P VGK G KW+ + + EK P+
Sbjct: 19 KRTKKDPNKPKRALSAYMFFVQDYRERIKTENPEA-TFGDVGKLLGIKWREMNENEKKPY 77
Query: 126 EAKA 129
EAKA
Sbjct: 78 EAKA 81
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
Length = 706
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 61 RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 119
R K V+S K KDPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK+++
Sbjct: 530 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMSK 588
Query: 120 AEKAPFEAKAAKRKLDYEKLMTAYN 144
+K ++ KA K DYEK M Y+
Sbjct: 589 EKKEEWDRKAEDAKRDYEKAMKEYS 613
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.124 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,102,689
Number of Sequences: 539616
Number of extensions: 2982871
Number of successful extensions: 101189
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2195
Number of HSP's successfully gapped in prelim test: 1457
Number of HSP's that attempted gapping in prelim test: 43858
Number of HSP's gapped (non-prelim): 30684
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 57 (26.6 bits)