Query 029982
Match_columns 184
No_of_seqs 206 out of 1161
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:26:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co9_A Thymus high mobility gr 99.9 3.4E-24 1.2E-28 157.8 11.4 88 64-152 7-94 (102)
2 2eqz_A High mobility group pro 99.9 7.2E-24 2.5E-28 151.3 11.4 80 65-144 6-86 (86)
3 1k99_A Upstream binding factor 99.9 7.1E-24 2.4E-28 155.5 9.1 83 66-149 2-84 (99)
4 1hme_A High mobility group pro 99.9 1.1E-23 3.9E-28 146.9 8.1 76 69-145 1-76 (77)
5 2lhj_A High mobility group pro 99.9 4E-24 1.4E-28 155.9 4.6 83 63-146 11-95 (97)
6 2crj_A SWI/SNF-related matrix- 99.9 8.4E-23 2.9E-27 147.5 11.0 77 69-146 2-78 (92)
7 1cg7_A Protein (NON histone pr 99.9 5.8E-24 2E-28 154.0 4.5 83 64-147 10-92 (93)
8 2cs1_A PMS1 protein homolog 1; 99.9 1.3E-22 4.6E-27 146.5 10.0 81 69-150 2-82 (92)
9 1aab_A High mobility group pro 99.9 2.1E-23 7.2E-28 147.7 5.6 79 69-147 2-81 (83)
10 1wgf_A Upstream binding factor 99.9 1.2E-23 3.9E-28 151.6 4.0 79 63-142 9-87 (90)
11 2e6o_A HMG box-containing prot 99.9 6.7E-23 2.3E-27 146.6 7.9 79 65-144 8-86 (87)
12 3nm9_A HMG-D, high mobility gr 99.9 2.7E-22 9.2E-27 138.9 9.8 72 72-146 1-72 (73)
13 1hry_A Human SRY; DNA, DNA-bin 99.9 1.4E-22 4.7E-27 141.0 7.1 73 71-144 1-73 (76)
14 1wxl_A Single-strand recogniti 99.9 4.6E-22 1.6E-26 137.7 7.6 72 72-146 1-72 (73)
15 2gzk_A Sex-determining region 99.9 2.7E-21 9.1E-26 151.6 11.3 79 66-145 80-158 (159)
16 1ckt_A High mobility group 1 p 99.9 1.2E-21 4.2E-26 134.3 7.8 70 74-143 1-71 (71)
17 1j46_A SRY, sex-determining re 99.9 1.6E-21 5.3E-26 138.8 8.4 75 71-146 1-75 (85)
18 1l8y_A Upstream binding factor 99.8 2.7E-21 9.2E-26 140.3 8.5 75 73-149 3-77 (91)
19 1wz6_A HMG-box transcription f 99.8 1.2E-21 4E-26 138.4 6.1 76 70-146 3-78 (82)
20 4a3n_A Transcription factor SO 99.8 1.8E-21 6.2E-26 133.2 6.3 71 73-144 1-71 (71)
21 1v64_A Nucleolar transcription 99.8 6.5E-21 2.2E-25 141.9 9.6 80 65-149 7-87 (108)
22 4euw_A Transcription factor SO 99.8 3.8E-21 1.3E-25 142.5 8.2 77 68-145 23-99 (106)
23 3f27_D Transcription factor SO 99.8 4.1E-21 1.4E-25 135.6 7.4 74 71-145 3-76 (83)
24 1gt0_D Transcription factor SO 99.8 4.8E-21 1.7E-25 134.5 7.7 73 73-146 1-73 (80)
25 2yrq_A High mobility group pro 99.8 1.5E-20 5.2E-25 149.4 11.2 80 66-146 93-172 (173)
26 2lef_A LEF-1 HMG, protein (lym 99.8 1.4E-20 4.9E-25 134.0 8.1 73 73-146 1-73 (86)
27 3u2b_C Transcription factor SO 99.8 1.3E-20 4.4E-25 131.7 7.0 72 73-145 1-72 (79)
28 2yrq_A High mobility group pro 99.8 3.7E-20 1.3E-24 147.2 10.3 83 65-147 6-89 (173)
29 1i11_A Transcription factor SO 99.8 8.8E-21 3E-25 133.5 5.9 73 72-145 2-74 (81)
30 3fgh_A Transcription factor A, 99.8 2.2E-20 7.4E-25 127.1 7.5 66 73-143 1-66 (67)
31 1v63_A Nucleolar transcription 99.8 1.3E-19 4.5E-24 133.3 10.2 80 70-152 4-83 (101)
32 2d7l_A WD repeat and HMG-box D 99.8 7.3E-20 2.5E-24 129.9 6.7 62 70-132 1-63 (81)
33 2yuk_A Myeloid/lymphoid or mix 99.8 3E-20 1E-24 134.5 -0.0 67 67-138 15-83 (90)
34 3tmm_A Transcription factor A, 99.8 7.1E-19 2.4E-23 147.0 8.3 81 68-149 35-115 (238)
35 3tq6_A Transcription factor A, 99.8 1.5E-18 5.1E-23 143.0 9.3 78 71-149 6-83 (214)
36 2cto_A Novel protein; high mob 99.8 5E-19 1.7E-23 128.8 5.3 69 69-140 5-76 (93)
37 3tq6_A Transcription factor A, 99.7 3.4E-19 1.2E-23 146.8 1.3 77 67-148 107-183 (214)
38 3tmm_A Transcription factor A, 99.7 5.1E-19 1.7E-23 147.8 0.6 78 66-148 138-215 (238)
39 2gzk_A Sex-determining region 99.7 1.1E-16 3.8E-21 125.2 7.6 74 72-146 2-75 (159)
40 2qgu_A Probable signal peptide 55.6 8.2 0.00028 30.7 3.1 48 98-146 70-119 (211)
No 1
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.91 E-value=3.4e-24 Score=157.82 Aligned_cols=88 Identities=30% Similarity=0.512 Sum_probs=81.9
Q ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHH
Q 029982 64 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 143 (184)
Q Consensus 64 ~~kk~~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y 143 (184)
+++++.+||++||||+||||||++++|..|+.+||++ ++.+|+++||++|++|++++|++|.++|..++++|..+|..|
T Consensus 7 ~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y 85 (102)
T 2co9_A 7 GKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-TFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAY 85 (102)
T ss_dssp CSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred hhcCCCCcc
Q 029982 144 NKKQESTED 152 (184)
Q Consensus 144 ~~k~~~~~~ 152 (184)
+.++.....
T Consensus 86 ~~~~~~~~~ 94 (102)
T 2co9_A 86 RASLVSKSY 94 (102)
T ss_dssp HHHHTSSCC
T ss_pred Hhhcccccc
Confidence 988776543
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=7.2e-24 Score=151.28 Aligned_cols=80 Identities=33% Similarity=0.574 Sum_probs=75.4
Q ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHH
Q 029982 65 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 143 (184)
Q Consensus 65 ~kk~~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~-s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y 143 (184)
+++.++||++||||+||||||++++|..|+.+||+++ ++.+|+++||++|++||+++|++|.++|..++++|..+|..|
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 85 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDY 85 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566789999999999999999999999999999994 369999999999999999999999999999999999999999
Q ss_pred h
Q 029982 144 N 144 (184)
Q Consensus 144 ~ 144 (184)
+
T Consensus 86 ~ 86 (86)
T 2eqz_A 86 G 86 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 3
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.90 E-value=7.1e-24 Score=155.53 Aligned_cols=83 Identities=25% Similarity=0.492 Sum_probs=78.7
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 029982 66 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 145 (184)
Q Consensus 66 kk~~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~ 145 (184)
+++.+||++||||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|..|..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEM-SNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTS-CSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999 79999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 029982 146 KQES 149 (184)
Q Consensus 146 k~~~ 149 (184)
..+.
T Consensus 81 ~~P~ 84 (99)
T 1k99_A 81 DHPD 84 (99)
T ss_dssp CCCC
T ss_pred HCCC
Confidence 7653
No 4
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.89 E-value=1.1e-23 Score=146.86 Aligned_cols=76 Identities=50% Similarity=0.832 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 029982 69 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 145 (184)
Q Consensus 69 ~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~ 145 (184)
++||++||||+|||+||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++.+|..+|..|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47999999999999999999999999999999 79999999999999999999999999999999999999999975
No 5
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.89 E-value=4e-24 Score=155.92 Aligned_cols=83 Identities=37% Similarity=0.692 Sum_probs=78.2
Q ss_pred cccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHH
Q 029982 63 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLM 140 (184)
Q Consensus 63 k~~kk~~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s--~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em 140 (184)
+++++..+||++||||+||||||++++|..|+.+||++ + +.+|+++||++|++||+++|++|.++|..++.+|..+|
T Consensus 11 ~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~-~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~ 89 (97)
T 2lhj_A 11 RRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEI-AKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREK 89 (97)
T ss_dssp CCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTS-TTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778999999999999999999999999999999 7 99999999999999999999999999999999999999
Q ss_pred HHHhhc
Q 029982 141 TAYNKK 146 (184)
Q Consensus 141 ~~Y~~k 146 (184)
..|+.+
T Consensus 90 ~~y~~~ 95 (97)
T 2lhj_A 90 AEYAQR 95 (97)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999865
No 6
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.89 E-value=8.4e-23 Score=147.54 Aligned_cols=77 Identities=30% Similarity=0.528 Sum_probs=74.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 029982 69 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146 (184)
Q Consensus 69 ~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~k 146 (184)
.+||++||||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|..|+.+
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~ 78 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDL-PFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQS 78 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 47999999999999999999999999999999 799999999999999999999999999999999999999999875
No 7
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.89 E-value=5.8e-24 Score=154.05 Aligned_cols=83 Identities=45% Similarity=0.704 Sum_probs=78.3
Q ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHH
Q 029982 64 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 143 (184)
Q Consensus 64 ~~kk~~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y 143 (184)
++++..+||+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|..|
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTS-CHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred hhcC
Q 029982 144 NKKQ 147 (184)
Q Consensus 144 ~~k~ 147 (184)
..+.
T Consensus 89 ~~~~ 92 (93)
T 1cg7_A 89 NATL 92 (93)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 8764
No 8
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=146.47 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 029982 69 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQE 148 (184)
Q Consensus 69 ~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~k~~ 148 (184)
..+|++||||+||||||++++|..|+.+||++ ++.+|+++||++|++|++++|++|.++|..++++|..+|..|..++.
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~ 80 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKT-SLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQES 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35899999999999999999999999999999 79999999999999999999999999999999999999999998765
Q ss_pred CC
Q 029982 149 ST 150 (184)
Q Consensus 149 ~~ 150 (184)
..
T Consensus 81 ~~ 82 (92)
T 2cs1_A 81 QM 82 (92)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 9
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.88 E-value=2.1e-23 Score=147.68 Aligned_cols=79 Identities=33% Similarity=0.570 Sum_probs=74.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 029982 69 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQ 147 (184)
Q Consensus 69 ~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~-s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~k~ 147 (184)
++||++||||+||||||++++|..|+.+||+++ ++.+|+++||++|++||+++|++|.++|..++++|..+|..|+...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 81 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPK 81 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 479999999999999999999999999999984 3599999999999999999999999999999999999999997653
No 10
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=1.2e-23 Score=151.62 Aligned_cols=79 Identities=30% Similarity=0.507 Sum_probs=73.0
Q ss_pred cccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHH
Q 029982 63 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 142 (184)
Q Consensus 63 k~~kk~~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~ 142 (184)
++++++.+||++||||+||||||++++|..|+.+||++ ++.+|+++||++|++|++++|++|.++|..++++|..+|..
T Consensus 9 ~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 87 (90)
T 1wgf_A 9 PSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPEL-SESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGP 87 (90)
T ss_dssp SCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSS
T ss_pred CCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778999999999999999999999999999999 79999999999999999999999999999999999876643
No 11
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.88 E-value=6.7e-23 Score=146.63 Aligned_cols=79 Identities=25% Similarity=0.424 Sum_probs=74.7
Q ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHh
Q 029982 65 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 144 (184)
Q Consensus 65 ~kk~~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~ 144 (184)
.++..+||+.||||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..++++|+
T Consensus 8 ~~~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 8 GTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp SSCCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 345678999999999999999999999999999999 7999999999999999999999999999999999999998874
No 12
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.88 E-value=2.7e-22 Score=138.89 Aligned_cols=72 Identities=42% Similarity=0.770 Sum_probs=69.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 029982 72 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146 (184)
Q Consensus 72 p~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~k 146 (184)
.|+||||+||||||++++|..|+.+||++ ++.+|+++||++|++|++ |++|.++|..++++|..+|.+|+.+
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGI-KVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47999999999999999999999999999 799999999999999998 9999999999999999999999875
No 13
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.87 E-value=1.4e-22 Score=140.97 Aligned_cols=73 Identities=33% Similarity=0.471 Sum_probs=69.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHh
Q 029982 71 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 144 (184)
Q Consensus 71 dp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~ 144 (184)
||+.||||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|.+|+
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yk 73 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK 73 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCC-SSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 689999999999999999999999999999 7999999999999999999999999999999999999999885
No 14
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.86 E-value=4.6e-22 Score=137.73 Aligned_cols=72 Identities=38% Similarity=0.706 Sum_probs=69.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 029982 72 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146 (184)
Q Consensus 72 p~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~k 146 (184)
||+||||+||||||++++|..|+.+||++ ++.+|+++||++|++| ++|++|.++|..++++|..+|..|+.+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGI-KVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 78999999999999999999999999999 7999999999999999 889999999999999999999999764
No 15
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.85 E-value=2.7e-21 Score=151.61 Aligned_cols=79 Identities=49% Similarity=0.812 Sum_probs=75.8
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 029982 66 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 145 (184)
Q Consensus 66 kk~~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~ 145 (184)
++..+||++||||+||||||+.++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|.+|+.
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999 79999999999999999999999999999999999999999975
No 16
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.85 E-value=1.2e-21 Score=134.34 Aligned_cols=70 Identities=33% Similarity=0.592 Sum_probs=66.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHH
Q 029982 74 KPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 143 (184)
Q Consensus 74 ~PKRP~SAy~lF~~e~r~~~k~e~P~~~-s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y 143 (184)
+||||+|||+||++++|..++.+||+++ ++.+|++.||++|++||+++|++|.++|..++++|..+|..|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5999999999999999999999999994 359999999999999999999999999999999999999876
No 17
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.85 E-value=1.6e-21 Score=138.82 Aligned_cols=75 Identities=32% Similarity=0.461 Sum_probs=72.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 029982 71 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146 (184)
Q Consensus 71 dp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~k 146 (184)
.||.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|.+|.-.
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 75 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccC
Confidence 489999999999999999999999999999 799999999999999999999999999999999999999999654
No 18
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.85 E-value=2.7e-21 Score=140.27 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=71.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 029982 73 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQES 149 (184)
Q Consensus 73 ~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~k~~~ 149 (184)
|.|+||+||||||++++|..++..||+ ++++|++.||++|++|++.+|++|+++|..++++|..+|..|+.+...
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~ 77 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAA 77 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 789999999999999999999999998 589999999999999999999999999999999999999999887665
No 19
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.84 E-value=1.2e-21 Score=138.39 Aligned_cols=76 Identities=25% Similarity=0.418 Sum_probs=72.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 029982 70 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146 (184)
Q Consensus 70 kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~k 146 (184)
.+|++||||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|.+|+.+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~ 78 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRL-DNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSG 78 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSS-CTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcC
Confidence 5899999999999999999999999999999 799999999999999999999999999999999999999999654
No 20
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.84 E-value=1.8e-21 Score=133.21 Aligned_cols=71 Identities=31% Similarity=0.514 Sum_probs=63.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHh
Q 029982 73 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 144 (184)
Q Consensus 73 ~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~ 144 (184)
+.||||+||||||++++|..++.+||++ ++.+|+++||++|++||+++|++|.++|..++.+|..+|++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 4799999999999999999999999999 7999999999999999999999999999999999999999884
No 21
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=6.5e-21 Score=141.94 Aligned_cols=80 Identities=23% Similarity=0.384 Sum_probs=73.9
Q ss_pred cccCCCCCCCC-CCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHH
Q 029982 65 VKSAKKDPNKP-KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 143 (184)
Q Consensus 65 ~kk~~kdp~~P-KRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y 143 (184)
+.++.+||++| |||+||||||++++|..|+ ++ ++.+|++.||++|++|++++|++|.++|..++++|..+|..|
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~-~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y 81 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DV-PSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRF 81 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566899999 9999999999999999886 67 799999999999999999999999999999999999999999
Q ss_pred hhcCCC
Q 029982 144 NKKQES 149 (184)
Q Consensus 144 ~~k~~~ 149 (184)
..++..
T Consensus 82 ~~~~~~ 87 (108)
T 1v64_A 82 LESLPE 87 (108)
T ss_dssp HHHSCH
T ss_pred HhhCCH
Confidence 998764
No 22
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.84 E-value=3.8e-21 Score=142.55 Aligned_cols=77 Identities=26% Similarity=0.479 Sum_probs=70.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 029982 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 145 (184)
Q Consensus 68 ~~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~ 145 (184)
..++|+.||||+||||||++++|..|+.+||++ ++.+|+++||++|+.||+++|++|.++|..++++|..+|++|+-
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky 99 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPHL-HNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKY 99 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 467899999999999999999999999999999 79999999999999999999999999999999999999999954
No 23
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.84 E-value=4.1e-21 Score=135.58 Aligned_cols=74 Identities=30% Similarity=0.478 Sum_probs=68.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 029982 71 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 145 (184)
Q Consensus 71 dp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~ 145 (184)
.++.||||+||||||++++|..|+.+||++ ++.+|+++||++|++|++++|++|.++|..++++|..+|++|+-
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 76 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKY 76 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 467899999999999999999999999999 79999999999999999999999999999999999999999953
No 24
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.84 E-value=4.8e-21 Score=134.48 Aligned_cols=73 Identities=32% Similarity=0.495 Sum_probs=70.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 029982 73 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146 (184)
Q Consensus 73 ~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~k 146 (184)
+.||||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|++|+-.
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 73 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKM-HNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYR 73 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccC
Confidence 5799999999999999999999999999 799999999999999999999999999999999999999999653
No 25
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=149.41 Aligned_cols=80 Identities=50% Similarity=0.816 Sum_probs=76.3
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 029982 66 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 145 (184)
Q Consensus 66 kk~~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~ 145 (184)
++..+||++||||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|.+|+.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567999999999999999999999999999999 79999999999999999999999999999999999999999986
Q ss_pred c
Q 029982 146 K 146 (184)
Q Consensus 146 k 146 (184)
+
T Consensus 172 k 172 (173)
T 2yrq_A 172 K 172 (173)
T ss_dssp C
T ss_pred c
Confidence 5
No 26
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.83 E-value=1.4e-20 Score=133.99 Aligned_cols=73 Identities=22% Similarity=0.388 Sum_probs=69.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 029982 73 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146 (184)
Q Consensus 73 ~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~k 146 (184)
..|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|++|.-.
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 73 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLK-ESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSAR 73 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCC
Confidence 3699999999999999999999999999 799999999999999999999999999999999999999999744
No 27
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.82 E-value=1.3e-20 Score=131.74 Aligned_cols=72 Identities=28% Similarity=0.476 Sum_probs=69.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 029982 73 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 145 (184)
Q Consensus 73 ~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~ 145 (184)
+.||||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++++|..+|++|+=
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky 72 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDM-HNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKY 72 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 4789999999999999999999999999 79999999999999999999999999999999999999999953
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=3.7e-20 Score=147.18 Aligned_cols=83 Identities=31% Similarity=0.538 Sum_probs=77.1
Q ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHH
Q 029982 65 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 143 (184)
Q Consensus 65 ~kk~~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~-s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y 143 (184)
.++.++||++||||+|||+||++++|..|+.+||+++ ++.+|+++||++|++||+++|++|.++|..++.+|..+|..|
T Consensus 6 ~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 85 (173)
T 2yrq_A 6 SGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 85 (173)
T ss_dssp CSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4456789999999999999999999999999999942 799999999999999999999999999999999999999999
Q ss_pred hhcC
Q 029982 144 NKKQ 147 (184)
Q Consensus 144 ~~k~ 147 (184)
....
T Consensus 86 ~~~~ 89 (173)
T 2yrq_A 86 IPPK 89 (173)
T ss_dssp CCCC
T ss_pred hhhh
Confidence 7654
No 29
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.82 E-value=8.8e-21 Score=133.55 Aligned_cols=73 Identities=27% Similarity=0.455 Sum_probs=68.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 029982 72 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 145 (184)
Q Consensus 72 p~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~ 145 (184)
++.||||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++.+|..++++|+-
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky 74 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKY 74 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSC-CHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC--
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 57899999999999999999999999999 79999999999999999999999999999999999999998853
No 30
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.82 E-value=2.2e-20 Score=127.14 Aligned_cols=66 Identities=33% Similarity=0.519 Sum_probs=62.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHH
Q 029982 73 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 143 (184)
Q Consensus 73 ~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y 143 (184)
|+||||+|||+||++++|..++..|| .+|++.||++|++||+++|.+|.++|..++.+|..+|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999987664 5899999999999999999999999999999999999998
No 31
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.81 E-value=1.3e-19 Score=133.30 Aligned_cols=80 Identities=14% Similarity=0.296 Sum_probs=70.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 029982 70 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQES 149 (184)
Q Consensus 70 kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~k~~~ 149 (184)
...++||||+||||||+++++. ...++++ ++.+|++.||++|+.|++++|++|.++|..++++|..+|..|..++.+
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~-~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~ 80 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHL-PLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSP 80 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 3567999999999999999974 2344557 689999999999999999999999999999999999999999999876
Q ss_pred Ccc
Q 029982 150 TED 152 (184)
Q Consensus 150 ~~~ 152 (184)
...
T Consensus 81 ~~~ 83 (101)
T 1v63_A 81 QDR 83 (101)
T ss_dssp THH
T ss_pred HHH
Confidence 543
No 32
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=7.3e-20 Score=129.90 Aligned_cols=62 Identities=23% Similarity=0.391 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHhhcCChHHhHHHHHHHHHH
Q 029982 70 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFEAKAAKR 132 (184)
Q Consensus 70 kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s-~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~ 132 (184)
.++|+||||+||||||++++|..|+.+||++ + +.+|+++||++|++|++++|++|+++|..+
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~-~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDF-SDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTC-CSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999 7 999999999999999999999999999886
No 33
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.76 E-value=3e-20 Score=134.53 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=62.5
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHH
Q 029982 67 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEK 138 (184)
Q Consensus 67 k~~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s--~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~ 138 (184)
+..+|||+||||+|||||||+++|..|+.+||++ + +.+|+ ++|+.|++++|++|+++|+.+++.|..
T Consensus 15 k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~-s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~ 83 (90)
T 2yuk_A 15 KWEKEEALGEMATVAPVLYTNINFPNLKEEFPDW-TTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRI 83 (90)
T ss_dssp HHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSH-HHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCc-cchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4456999999999999999999999999999999 7 88887 999999999999999999999999864
No 34
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.76 E-value=7.1e-19 Score=146.96 Aligned_cols=81 Identities=16% Similarity=0.382 Sum_probs=77.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 029982 68 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQ 147 (184)
Q Consensus 68 ~~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~k~ 147 (184)
...+|++||||+|||+||++++|..|+.+||++ ++.+|+++||++|+.|++++|.+|+++|..++++|..+|..|...+
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 113 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 113 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356899999999999999999999999999999 7999999999999999999999999999999999999999998877
Q ss_pred CC
Q 029982 148 ES 149 (184)
Q Consensus 148 ~~ 149 (184)
.+
T Consensus 114 ~p 115 (238)
T 3tmm_A 114 TP 115 (238)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 35
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=142.95 Aligned_cols=78 Identities=17% Similarity=0.399 Sum_probs=74.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 029982 71 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQES 149 (184)
Q Consensus 71 dp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~k~~~ 149 (184)
.|++||||+|||+||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.++|..++++|..+|..|...+++
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp 83 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTP 83 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCH
Confidence 478999999999999999999999999999 799999999999999999999999999999999999999999887764
No 36
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5e-19 Score=128.81 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=64.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHH---HHHhhcCChHHhHHHHHHHHHHHHHHHHHH
Q 029982 69 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG---GEKWKSLTDAEKAPFEAKAAKRKLDYEKLM 140 (184)
Q Consensus 69 ~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~i---g~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em 140 (184)
..++|+||||+||||||++++|..|+.+ ++ ++.+|++.| |++|+.|++++|++|+++|.++++.|.+++
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~-~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GL-PVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TC-CCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999999988 67 689999999 999999999999999999999999998876
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.73 E-value=3.4e-19 Score=146.80 Aligned_cols=77 Identities=27% Similarity=0.369 Sum_probs=70.4
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 029982 67 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146 (184)
Q Consensus 67 k~~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~k 146 (184)
+..+|||+||||+|||||||+++|..|+..| ..+|++.||++|++||+++|++|..+|..++++|..+|.+|..+
T Consensus 107 k~~kdp~~PKrP~say~lF~~e~r~~~k~~~-----p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~ 181 (214)
T 3tq6_A 107 KELTLLGKPKRPRSAYNVYVAERFQEAKGDS-----PQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 181 (214)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSSCSS-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCcccccchhhhhHHHHHHhhccCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467999999999999999999999886554 44899999999999999999999999999999999999999988
Q ss_pred CC
Q 029982 147 QE 148 (184)
Q Consensus 147 ~~ 148 (184)
+.
T Consensus 182 ~~ 183 (214)
T 3tq6_A 182 MI 183 (214)
T ss_dssp HH
T ss_pred Cc
Confidence 64
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.72 E-value=5.1e-19 Score=147.85 Aligned_cols=78 Identities=29% Similarity=0.418 Sum_probs=70.8
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 029982 66 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 145 (184)
Q Consensus 66 kk~~kdp~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~ 145 (184)
++..+||++||||+|||||||+++|..|+.+|| .+|++.||++|++|++++|++|..+|..++++|..+|.+|+.
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 212 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH-----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344679999999999999999999998876554 489999999999999999999999999999999999999998
Q ss_pred cCC
Q 029982 146 KQE 148 (184)
Q Consensus 146 k~~ 148 (184)
++.
T Consensus 213 k~~ 215 (238)
T 3tmm_A 213 QMI 215 (238)
T ss_dssp HHH
T ss_pred hCc
Confidence 764
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.66 E-value=1.1e-16 Score=125.22 Aligned_cols=74 Identities=32% Similarity=0.481 Sum_probs=70.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcCChHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 029982 72 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 146 (184)
Q Consensus 72 p~~PKRP~SAy~lF~~e~r~~~k~e~P~~~s~~ei~k~ig~~Wk~ls~~eK~~y~~~A~~~k~~Y~~em~~Y~~k 146 (184)
|+.|+||++|||||+.+.|..|+.+||++ ++.+|+++||++|++||+++|.+|.++|..++.+|..+|..|...
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~ 75 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccc
Confidence 68999999999999999999999999999 799999999999999999999999999999999999999999643
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=55.56 E-value=8.2 Score=30.70 Aligned_cols=48 Identities=10% Similarity=0.191 Sum_probs=38.2
Q ss_pred CCCccHHHHHHH-HHHHhhcCChHHhHHHHHHHHH-HHHHHHHHHHHHhhc
Q 029982 98 PNVKAVSAVGKA-GGEKWKSLTDAEKAPFEAKAAK-RKLDYEKLMTAYNKK 146 (184)
Q Consensus 98 P~~~s~~ei~k~-ig~~Wk~ls~~eK~~y~~~A~~-~k~~Y~~em~~Y~~k 146 (184)
|.. .+..+++. +|..|+.+++++++.|.+.... ...-|-..+..|...
T Consensus 70 p~~-D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q 119 (211)
T 2qgu_A 70 PRA-DFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQ 119 (211)
T ss_dssp GGB-CHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred hhc-CHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 555 56667665 5899999999999999987776 566799999999753
Done!