Query 029984
Match_columns 184
No_of_seqs 205 out of 1969
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 06:42:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1530 Rhodanese-related sulf 99.9 6.7E-26 1.5E-30 158.0 10.9 115 69-183 19-135 (136)
2 PLN02160 thiosulfate sulfurtra 99.9 1.8E-25 3.9E-30 161.7 12.8 113 72-184 14-128 (136)
3 cd01527 RHOD_YgaP Member of th 99.9 1.6E-24 3.4E-29 148.3 10.6 98 73-182 2-99 (99)
4 cd01533 4RHOD_Repeat_2 Member 99.9 3.6E-24 7.7E-29 149.2 11.9 98 70-179 7-109 (109)
5 PRK00162 glpE thiosulfate sulf 99.9 7.2E-24 1.6E-28 147.4 12.0 101 72-184 4-105 (108)
6 cd01518 RHOD_YceA Member of th 99.9 4.4E-24 9.5E-29 146.7 8.2 98 74-177 3-101 (101)
7 cd01521 RHOD_PspE2 Member of t 99.9 1.2E-22 2.7E-27 141.7 11.3 98 72-182 7-110 (110)
8 cd01524 RHOD_Pyr_redox Member 99.9 1.2E-22 2.7E-27 136.7 10.6 88 76-176 2-89 (90)
9 cd01523 RHOD_Lact_B Member of 99.9 8.7E-23 1.9E-27 140.0 9.9 97 75-176 1-99 (100)
10 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 4.3E-22 9.4E-27 148.0 14.3 108 72-182 35-162 (162)
11 cd01526 RHOD_ThiF Member of th 99.9 2.4E-22 5.3E-27 142.7 10.8 108 70-182 5-118 (122)
12 cd01520 RHOD_YbbB Member of th 99.9 2E-22 4.4E-27 144.3 10.4 102 75-177 1-126 (128)
13 cd01534 4RHOD_Repeat_3 Member 99.9 2.2E-22 4.7E-27 136.8 10.1 90 75-176 1-94 (95)
14 cd01519 RHOD_HSP67B2 Member of 99.9 1.6E-22 3.5E-27 139.8 9.5 101 76-177 2-106 (106)
15 cd01528 RHOD_2 Member of the R 99.9 3.3E-22 7.1E-27 137.4 10.6 92 75-178 2-99 (101)
16 cd01444 GlpE_ST GlpE sulfurtra 99.9 4.1E-22 9E-27 135.3 10.6 90 75-176 2-95 (96)
17 cd01447 Polysulfide_ST Polysul 99.9 3.8E-22 8.2E-27 137.1 9.8 101 75-179 1-103 (103)
18 cd01448 TST_Repeat_1 Thiosulfa 99.9 8.4E-22 1.8E-26 139.7 11.5 105 75-179 2-122 (122)
19 cd01535 4RHOD_Repeat_4 Member 99.9 6.4E-22 1.4E-26 144.5 10.9 91 81-183 3-95 (145)
20 PRK11493 sseA 3-mercaptopyruva 99.9 1.3E-21 2.7E-26 157.6 11.5 141 44-184 114-279 (281)
21 cd01525 RHOD_Kc Member of the 99.9 8E-22 1.7E-26 136.1 8.9 100 75-176 1-104 (105)
22 cd01449 TST_Repeat_2 Thiosulfa 99.9 1.7E-21 3.6E-26 137.3 9.7 103 75-177 1-118 (118)
23 cd01530 Cdc25 Cdc25 phosphatas 99.9 2.3E-21 5E-26 137.6 10.2 92 74-176 3-120 (121)
24 smart00450 RHOD Rhodanese Homo 99.9 3.2E-21 7E-26 130.6 10.5 96 86-181 3-100 (100)
25 cd01522 RHOD_1 Member of the R 99.9 2E-21 4.3E-26 137.1 9.3 102 75-178 1-105 (117)
26 cd01529 4RHOD_Repeats Member o 99.9 3.5E-21 7.7E-26 131.0 8.8 86 86-177 11-96 (96)
27 COG2897 SseA Rhodanese-related 99.9 7.8E-21 1.7E-25 151.7 12.0 141 44-184 117-282 (285)
28 PLN02723 3-mercaptopyruvate su 99.9 7.4E-21 1.6E-25 155.7 12.1 110 75-184 192-317 (320)
29 PF00581 Rhodanese: Rhodanese- 99.8 7.8E-21 1.7E-25 132.1 10.2 103 76-178 1-113 (113)
30 PRK08762 molybdopterin biosynt 99.8 8.6E-21 1.9E-25 158.4 12.1 100 73-184 3-104 (376)
31 PRK07878 molybdopterin biosynt 99.8 1.3E-20 2.9E-25 157.9 13.0 135 33-181 251-387 (392)
32 cd01532 4RHOD_Repeat_1 Member 99.8 7.9E-21 1.7E-25 128.5 8.8 80 86-177 9-92 (92)
33 COG0607 PspE Rhodanese-related 99.8 2.7E-20 5.9E-25 129.1 9.1 87 86-184 19-108 (110)
34 cd01445 TST_Repeats Thiosulfat 99.8 6.3E-20 1.4E-24 133.0 11.2 102 75-176 1-137 (138)
35 PRK11493 sseA 3-mercaptopyruva 99.8 7.5E-20 1.6E-24 147.3 12.3 112 73-184 5-135 (281)
36 PRK07411 hypothetical protein; 99.8 8.9E-20 1.9E-24 152.8 12.2 140 33-182 243-386 (390)
37 PRK09629 bifunctional thiosulf 99.8 9.5E-20 2.1E-24 159.7 12.8 141 44-184 108-271 (610)
38 PRK09629 bifunctional thiosulf 99.8 1.1E-19 2.3E-24 159.4 12.6 111 73-183 9-128 (610)
39 cd00158 RHOD Rhodanese Homolog 99.8 6E-20 1.3E-24 122.3 8.1 80 85-176 8-89 (89)
40 TIGR02981 phageshock_pspE phag 99.8 9.7E-20 2.1E-24 125.1 9.3 80 86-178 17-98 (101)
41 PRK01415 hypothetical protein; 99.8 3.2E-19 6.9E-24 140.0 13.3 103 71-179 110-213 (247)
42 PRK10287 thiosulfate:cyanide s 99.8 1.6E-19 3.4E-24 124.7 9.3 78 87-177 20-99 (104)
43 PLN02723 3-mercaptopyruvate su 99.8 2.6E-19 5.6E-24 146.5 12.2 113 72-184 21-151 (320)
44 PRK05320 rhodanese superfamily 99.8 2.9E-19 6.3E-24 141.8 10.6 102 71-178 108-216 (257)
45 cd01531 Acr2p Eukaryotic arsen 99.8 2.5E-19 5.4E-24 125.5 8.5 96 74-178 3-112 (113)
46 PRK00142 putative rhodanese-re 99.8 2E-18 4.2E-23 140.7 10.9 102 71-178 110-212 (314)
47 cd01443 Cdc25_Acr2p Cdc25 enzy 99.8 1E-18 2.3E-23 122.4 7.5 94 74-176 3-112 (113)
48 PRK11784 tRNA 2-selenouridine 99.8 2.9E-18 6.3E-23 141.1 9.5 104 77-181 5-132 (345)
49 TIGR03167 tRNA_sel_U_synt tRNA 99.7 4.9E-18 1.1E-22 138.0 8.6 95 87-182 2-119 (311)
50 PRK05597 molybdopterin biosynt 99.7 1.3E-17 2.7E-22 138.3 10.7 95 71-177 259-354 (355)
51 COG2897 SseA Rhodanese-related 99.7 6.3E-17 1.4E-21 129.3 12.0 114 71-184 9-138 (285)
52 cd01446 DSP_MapKP N-terminal r 99.7 9.5E-17 2E-21 115.4 9.6 102 75-178 2-127 (132)
53 PRK05600 thiamine biosynthesis 99.7 4.3E-17 9.3E-22 135.6 8.9 93 74-173 272-369 (370)
54 KOG2017 Molybdopterin synthase 99.6 4.8E-15 1E-19 119.3 8.0 152 22-182 261-423 (427)
55 PRK01269 tRNA s(4)U8 sulfurtra 99.5 5.9E-14 1.3E-18 120.7 9.6 75 83-169 403-481 (482)
56 COG1054 Predicted sulfurtransf 99.4 7.8E-13 1.7E-17 104.8 5.4 101 72-178 112-213 (308)
57 KOG1529 Mercaptopyruvate sulfu 99.3 9.3E-12 2E-16 98.3 9.9 134 44-178 115-276 (286)
58 KOG3772 M-phase inducer phosph 99.3 5.2E-12 1.1E-16 101.6 7.1 97 71-178 154-276 (325)
59 KOG1529 Mercaptopyruvate sulfu 99.3 3.5E-11 7.5E-16 95.0 10.2 111 74-184 6-136 (286)
60 COG5105 MIH1 Mitotic inducer, 98.6 1.5E-07 3.2E-12 75.6 6.9 95 72-177 241-357 (427)
61 COG2603 Predicted ATPase [Gene 97.7 4.3E-05 9.3E-10 61.0 3.8 99 77-176 5-127 (334)
62 TIGR01244 conserved hypothetic 97.3 0.0019 4E-08 46.5 8.3 86 73-163 13-113 (135)
63 PF04273 DUF442: Putative phos 97.3 0.0022 4.7E-08 44.6 8.2 76 73-155 13-104 (110)
64 KOG1093 Predicted protein kina 96.2 0.0027 5.8E-08 55.3 1.9 94 72-176 621-719 (725)
65 PRK00142 putative rhodanese-re 95.7 0.0015 3.3E-08 53.6 -1.6 38 75-112 16-53 (314)
66 PF13350 Y_phosphatase3: Tyros 95.2 0.2 4.4E-06 36.9 8.7 94 71-164 26-153 (164)
67 cd00127 DSPc Dual specificity 93.9 0.2 4.2E-06 35.4 5.6 83 80-162 20-109 (139)
68 TIGR03167 tRNA_sel_U_synt tRNA 93.7 0.23 5E-06 40.8 6.4 94 46-148 102-207 (311)
69 smart00195 DSPc Dual specifici 93.4 0.28 6E-06 34.8 5.7 80 80-163 19-107 (138)
70 PLN02727 NAD kinase 93.3 0.67 1.4E-05 43.2 9.1 74 72-150 266-354 (986)
71 KOG3636 Uncharacterized conser 93.0 0.3 6.6E-06 41.8 6.1 83 88-176 327-427 (669)
72 COG3453 Uncharacterized protei 92.9 0.94 2E-05 31.9 7.4 81 71-157 12-107 (130)
73 KOG1717 Dual specificity phosp 91.9 0.37 7.9E-06 38.6 4.9 99 75-178 6-124 (343)
74 PF05706 CDKN3: Cyclin-depende 89.1 1.2 2.6E-05 33.2 5.3 84 78-161 62-159 (168)
75 PF00782 DSPc: Dual specificit 86.7 1.9 4.2E-05 30.1 5.1 81 83-163 14-102 (133)
76 COG2453 CDC14 Predicted protei 85.6 1.4 3.1E-05 33.0 4.2 33 130-162 98-133 (180)
77 PRK12361 hypothetical protein; 85.6 2 4.3E-05 38.0 5.6 79 77-159 110-199 (547)
78 PTZ00242 protein tyrosine phos 84.7 5 0.00011 29.7 6.7 79 78-161 31-124 (166)
79 PF03162 Y_phosphatase2: Tyros 80.0 2.9 6.4E-05 31.0 3.9 76 88-163 34-119 (164)
80 PTZ00393 protein tyrosine phos 77.5 18 0.00038 28.7 7.6 81 78-163 107-198 (241)
81 PRK11784 tRNA 2-selenouridine 77.3 7.9 0.00017 32.3 6.0 61 46-106 116-187 (345)
82 PF03853 YjeF_N: YjeF-related 75.4 9.4 0.0002 28.3 5.5 32 135-167 23-57 (169)
83 PF09992 DUF2233: Predicted pe 72.4 4.6 9.9E-05 29.7 3.2 39 135-173 98-141 (170)
84 COG1891 Uncharacterized protei 71.1 7.2 0.00016 29.5 3.9 34 74-112 7-40 (235)
85 COG0062 Uncharacterized conser 70.3 15 0.00032 28.3 5.6 35 132-167 42-81 (203)
86 COG2185 Sbm Methylmalonyl-CoA 68.6 20 0.00043 26.0 5.6 39 134-172 60-102 (143)
87 TIGR02689 ars_reduc_gluta arse 66.2 11 0.00025 26.3 4.0 34 139-172 2-36 (126)
88 TIGR00197 yjeF_nterm yjeF N-te 64.4 21 0.00045 27.3 5.4 35 133-168 41-78 (205)
89 PF03610 EIIA-man: PTS system 62.8 37 0.0008 23.2 6.0 46 125-170 45-90 (116)
90 PLN03050 pyridoxine (pyridoxam 61.5 14 0.0003 29.3 4.1 30 138-168 61-93 (246)
91 PRK10565 putative carbohydrate 60.5 22 0.00047 31.4 5.4 34 134-168 57-93 (508)
92 PRK08762 molybdopterin biosynt 59.0 18 0.0004 30.3 4.6 38 136-174 134-171 (376)
93 cd05565 PTS_IIB_lactose PTS_II 58.4 30 0.00064 23.4 4.7 37 139-176 2-42 (99)
94 smart00404 PTPc_motif Protein 57.0 26 0.00057 22.6 4.4 18 136-153 38-56 (105)
95 smart00012 PTPc_DSPc Protein t 57.0 26 0.00057 22.6 4.4 18 136-153 38-56 (105)
96 PRK12898 secA preprotein trans 56.7 44 0.00096 30.5 6.8 37 136-173 472-508 (656)
97 PRK13530 arsenate reductase; P 56.4 28 0.0006 24.6 4.6 35 138-172 4-39 (133)
98 COG2519 GCD14 tRNA(1-methylade 56.1 97 0.0021 24.8 7.9 47 122-168 173-219 (256)
99 TIGR01587 cas3_core CRISPR-ass 56.1 24 0.00052 29.0 4.8 48 125-172 210-258 (358)
100 TIGR00853 pts-lac PTS system, 53.7 23 0.0005 23.6 3.6 38 137-175 3-44 (95)
101 PRK07688 thiamine/molybdopteri 53.6 9.5 0.0002 31.7 2.0 36 71-107 275-317 (339)
102 PF01488 Shikimate_DH: Shikima 53.3 49 0.0011 23.3 5.5 37 136-173 11-47 (135)
103 PLN03049 pyridoxine (pyridoxam 53.1 33 0.00072 29.9 5.3 30 138-168 60-92 (462)
104 PF02590 SPOUT_MTase: Predicte 52.9 38 0.00083 24.8 4.9 49 127-175 57-110 (155)
105 TIGR00640 acid_CoA_mut_C methy 52.8 80 0.0017 22.4 6.8 16 79-94 21-37 (132)
106 PRK10126 tyrosine phosphatase; 52.1 18 0.00039 26.0 3.1 37 138-175 3-40 (147)
107 KOG0333 U5 snRNP-like RNA heli 51.0 29 0.00063 30.9 4.5 48 124-172 502-551 (673)
108 cd00115 LMWPc Substituted upda 51.0 21 0.00045 25.3 3.2 37 139-175 2-40 (141)
109 COG0394 Wzb Protein-tyrosine-p 50.8 20 0.00044 25.7 3.1 37 138-174 3-40 (139)
110 PRK11391 etp phosphotyrosine-p 50.7 20 0.00043 25.8 3.1 37 138-175 3-40 (144)
111 PRK10310 PTS system galactitol 50.6 52 0.0011 21.7 4.9 37 139-176 4-45 (94)
112 PRK13802 bifunctional indole-3 50.5 68 0.0015 29.6 7.0 89 75-165 144-237 (695)
113 TIGR00201 comF comF family pro 50.4 27 0.00058 26.3 3.9 33 136-168 151-186 (190)
114 cd00079 HELICc Helicase superf 49.1 67 0.0015 21.4 5.6 36 136-172 27-62 (131)
115 PLN02918 pyridoxine (pyridoxam 49.0 41 0.00089 30.0 5.3 30 138-168 136-168 (544)
116 COG0034 PurF Glutamine phospho 48.7 26 0.00057 30.4 3.9 34 136-169 347-383 (470)
117 PRK00103 rRNA large subunit me 48.7 36 0.00078 25.0 4.2 50 126-175 56-110 (157)
118 KOG0572 Glutamine phosphoribos 47.1 29 0.00062 29.6 3.7 32 136-167 355-389 (474)
119 TIGR02691 arsC_pI258_fam arsen 46.9 27 0.00058 24.6 3.2 31 141-171 2-33 (129)
120 PRK09590 celB cellobiose phosp 45.9 32 0.00069 23.4 3.3 36 139-175 3-42 (104)
121 PLN02460 indole-3-glycerol-pho 45.3 1.3E+02 0.0028 25.2 7.3 90 75-165 214-314 (338)
122 PF00218 IGPS: Indole-3-glycer 45.2 9.1 0.0002 30.5 0.6 90 74-165 141-235 (254)
123 PF00156 Pribosyltran: Phospho 44.4 40 0.00088 22.8 3.8 33 135-167 86-121 (125)
124 cd02071 MM_CoA_mut_B12_BD meth 44.0 1.1E+02 0.0023 21.1 7.4 19 153-171 70-88 (122)
125 TIGR00614 recQ_fam ATP-depende 43.0 47 0.001 28.7 4.7 37 136-173 225-261 (470)
126 COG4822 CbiK Cobalamin biosynt 42.8 74 0.0016 25.0 5.2 42 126-167 123-172 (265)
127 PTZ00110 helicase; Provisional 42.7 54 0.0012 29.1 5.1 46 127-173 366-412 (545)
128 PRK07199 phosphoribosylpyropho 42.3 39 0.00085 27.6 3.9 32 136-167 210-244 (301)
129 PRK03092 ribose-phosphate pyro 42.1 66 0.0014 26.3 5.2 44 136-179 200-253 (304)
130 PF01206 TusA: Sulfurtransfera 42.1 78 0.0017 19.3 4.5 38 126-163 16-53 (70)
131 PF14572 Pribosyl_synth: Phosp 41.3 40 0.00086 25.6 3.5 32 136-167 82-116 (184)
132 cd05564 PTS_IIB_chitobiose_lic 40.3 39 0.00084 22.5 3.0 36 139-175 1-40 (96)
133 PF02302 PTS_IIB: PTS system, 39.5 45 0.00098 21.3 3.2 25 139-163 1-30 (90)
134 PRK13809 orotate phosphoribosy 39.3 86 0.0019 24.1 5.2 49 134-182 115-172 (206)
135 PRK04923 ribose-phosphate pyro 38.6 53 0.0012 27.1 4.2 32 136-167 216-250 (319)
136 cd00133 PTS_IIB PTS_IIB: subun 38.6 41 0.00089 20.6 2.9 21 139-159 1-22 (84)
137 COG0462 PrsA Phosphoribosylpyr 38.2 59 0.0013 26.8 4.3 32 136-167 213-247 (314)
138 PRK13957 indole-3-glycerol-pho 38.1 1.6E+02 0.0035 23.4 6.6 86 75-163 135-225 (247)
139 TIGR00824 EIIA-man PTS system, 37.9 89 0.0019 21.5 4.7 44 126-170 47-91 (116)
140 PRK09162 hypoxanthine-guanine 37.5 53 0.0011 24.6 3.7 33 136-168 96-131 (181)
141 PF02879 PGM_PMM_II: Phosphogl 37.4 80 0.0017 20.9 4.3 29 137-165 21-49 (104)
142 PRK13104 secA preprotein trans 37.1 63 0.0014 30.6 4.8 41 134-175 441-481 (896)
143 cd05567 PTS_IIB_mannitol PTS_I 37.0 52 0.0011 21.2 3.2 35 139-174 2-41 (87)
144 cd03422 YedF YedF is a bacteri 37.0 1E+02 0.0022 19.0 5.0 38 126-163 15-52 (69)
145 COG0134 TrpC Indole-3-glycerol 36.0 2.1E+02 0.0047 22.9 7.0 87 75-163 140-231 (254)
146 PRK11595 DNA utilization prote 36.0 60 0.0013 25.2 3.9 33 136-168 186-221 (227)
147 KOG0685 Flavin-containing amin 35.7 66 0.0014 28.2 4.4 35 136-171 20-54 (498)
148 KOG0330 ATP-dependent RNA heli 35.6 80 0.0017 27.1 4.7 37 137-174 300-336 (476)
149 COG3414 SgaB Phosphotransferas 35.2 67 0.0014 21.4 3.5 26 138-163 2-32 (93)
150 PRK11776 ATP-dependent RNA hel 35.0 79 0.0017 27.1 4.9 36 137-173 242-277 (460)
151 PRK05298 excinuclease ABC subu 35.0 58 0.0013 29.6 4.2 48 125-173 434-481 (652)
152 PRK04837 ATP-dependent RNA hel 35.0 56 0.0012 27.7 3.9 36 137-173 255-290 (423)
153 PRK02458 ribose-phosphate pyro 34.9 59 0.0013 26.9 3.9 32 136-167 217-251 (323)
154 PRK12560 adenine phosphoribosy 34.9 1E+02 0.0023 23.1 5.0 49 134-182 111-170 (187)
155 KOG1716 Dual specificity phosp 34.7 82 0.0018 25.4 4.7 29 134-162 152-183 (285)
156 PF13344 Hydrolase_6: Haloacid 34.7 1.2E+02 0.0025 20.2 4.7 36 125-163 21-57 (101)
157 TIGR02804 ExbD_2 TonB system t 34.6 1.5E+02 0.0033 20.3 6.2 44 125-168 72-118 (121)
158 COG0513 SrmB Superfamily II DN 34.6 83 0.0018 27.7 5.0 34 139-173 275-308 (513)
159 TIGR03372 putres_am_tran putre 34.6 68 0.0015 27.7 4.4 43 134-176 130-177 (442)
160 PRK11018 hypothetical protein; 34.6 1.2E+02 0.0026 19.2 5.0 38 126-163 24-61 (78)
161 TIGR01389 recQ ATP-dependent D 34.3 74 0.0016 28.4 4.7 36 137-173 224-259 (591)
162 COG0541 Ffh Signal recognition 34.1 2E+02 0.0044 25.0 7.0 46 125-170 202-251 (451)
163 PRK11192 ATP-dependent RNA hel 34.1 64 0.0014 27.4 4.2 37 136-173 244-280 (434)
164 PRK10499 PTS system N,N'-diace 34.1 64 0.0014 21.9 3.4 26 138-163 4-33 (106)
165 PLN03137 ATP-dependent DNA hel 34.0 75 0.0016 31.1 4.8 36 137-173 680-715 (1195)
166 PRK09246 amidophosphoribosyltr 33.9 62 0.0014 28.5 4.1 34 136-169 357-393 (501)
167 COG1576 Uncharacterized conser 33.9 1.5E+02 0.0032 21.9 5.3 50 125-175 55-109 (155)
168 TIGR00336 pyrE orotate phospho 33.9 1E+02 0.0023 22.7 4.8 50 134-183 105-165 (173)
169 PRK11057 ATP-dependent DNA hel 33.7 52 0.0011 29.6 3.6 37 136-173 235-271 (607)
170 PF08503 DapH_N: Tetrahydrodip 33.6 9.8 0.00021 24.9 -0.7 52 125-177 4-55 (83)
171 PRK04537 ATP-dependent RNA hel 33.5 53 0.0012 29.3 3.7 37 136-173 256-292 (572)
172 PRK00278 trpC indole-3-glycero 33.2 2.4E+02 0.0052 22.4 7.0 88 76-165 145-237 (260)
173 PRK06781 amidophosphoribosyltr 33.1 66 0.0014 28.1 4.1 35 136-170 347-384 (471)
174 cd01300 YtcJ_like YtcJ_like me 33.0 81 0.0018 27.2 4.6 34 130-163 105-138 (479)
175 cd00006 PTS_IIA_man PTS_IIA, P 33.0 1.4E+02 0.003 20.5 5.1 45 125-170 45-90 (122)
176 PRK02269 ribose-phosphate pyro 32.7 67 0.0014 26.5 3.9 32 136-167 216-250 (320)
177 TIGR00631 uvrb excinuclease AB 32.6 78 0.0017 28.9 4.6 48 125-173 430-477 (655)
178 PF00289 CPSase_L_chain: Carba 32.3 51 0.0011 22.6 2.7 29 141-169 5-33 (110)
179 COG0514 RecQ Superfamily II DN 32.2 48 0.001 29.9 3.1 37 136-173 229-265 (590)
180 COG1040 ComFC Predicted amidop 32.0 70 0.0015 24.9 3.7 31 138-168 185-218 (225)
181 PRK13812 orotate phosphoribosy 31.8 1.4E+02 0.0029 22.3 5.1 50 134-183 104-162 (176)
182 cd03420 SirA_RHOD_Pry_redox Si 31.3 1.3E+02 0.0028 18.4 5.0 38 126-163 15-52 (69)
183 TIGR00963 secA preprotein tran 31.3 1.2E+02 0.0025 28.3 5.4 38 134-172 402-439 (745)
184 PRK12906 secA preprotein trans 31.2 1.2E+02 0.0026 28.5 5.5 39 135-174 438-476 (796)
185 TIGR03158 cas3_cyano CRISPR-as 30.6 1E+02 0.0022 25.6 4.7 40 136-175 271-311 (357)
186 PF07755 DUF1611: Protein of u 30.5 1.2E+02 0.0026 25.0 4.9 33 145-178 123-157 (301)
187 KOG0332 ATP-dependent RNA heli 30.5 56 0.0012 27.9 3.0 34 140-174 333-366 (477)
188 cd05563 PTS_IIB_ascorbate PTS_ 30.5 67 0.0015 20.4 2.9 23 140-162 2-29 (86)
189 PF00899 ThiF: ThiF family; I 30.3 80 0.0017 22.0 3.5 37 138-175 3-39 (135)
190 PRK10590 ATP-dependent RNA hel 29.3 74 0.0016 27.4 3.8 36 137-173 245-280 (456)
191 COG2518 Pcm Protein-L-isoaspar 29.3 46 0.001 25.8 2.2 24 155-178 112-136 (209)
192 TIGR01809 Shik-DH-AROM shikima 29.0 97 0.0021 24.9 4.2 33 136-169 124-156 (282)
193 COG1204 Superfamily II helicas 29.0 2.1E+02 0.0046 26.8 6.8 87 73-159 189-275 (766)
194 TIGR00537 hemK_rel_arch HemK-r 28.8 1.2E+02 0.0026 22.1 4.4 47 125-171 121-167 (179)
195 PRK00934 ribose-phosphate pyro 28.2 95 0.0021 25.1 4.0 32 136-167 203-237 (285)
196 PF02863 Arg_repressor_C: Argi 28.1 86 0.0019 19.5 3.0 26 134-159 44-69 (70)
197 PRK08341 amidophosphoribosyltr 28.1 82 0.0018 27.3 3.8 33 136-168 333-368 (442)
198 PRK08117 4-aminobutyrate amino 28.1 98 0.0021 26.4 4.3 46 131-176 96-143 (433)
199 PRK07631 amidophosphoribosyltr 27.8 83 0.0018 27.6 3.8 33 136-168 347-382 (475)
200 PRK00553 ribose-phosphate pyro 27.7 94 0.002 25.8 4.0 32 136-167 217-251 (332)
201 PRK13810 orotate phosphoribosy 27.7 1.8E+02 0.004 21.9 5.2 50 133-182 118-176 (187)
202 cd05566 PTS_IIB_galactitol PTS 27.6 92 0.002 19.9 3.2 24 139-162 2-30 (89)
203 PRK06148 hypothetical protein; 27.5 97 0.0021 29.9 4.5 43 134-176 676-720 (1013)
204 PRK07349 amidophosphoribosyltr 27.4 93 0.002 27.5 4.0 33 136-168 376-411 (500)
205 PRK09200 preprotein translocas 27.3 1.4E+02 0.003 28.1 5.3 39 135-174 426-464 (790)
206 TIGR03840 TMPT_Se_Te thiopurin 26.9 1.8E+02 0.0039 22.3 5.2 44 125-173 21-67 (213)
207 cd05311 NAD_bind_2_malic_enz N 26.9 1.2E+02 0.0026 23.6 4.2 33 136-169 24-58 (226)
208 cd03423 SirA SirA (also known 26.8 1.6E+02 0.0034 18.0 5.3 38 126-163 15-52 (69)
209 PF00102 Y_phosphatase: Protei 26.8 91 0.002 23.5 3.6 18 135-152 168-186 (235)
210 cd00291 SirA_YedF_YeeD SirA, Y 26.6 1.5E+02 0.0033 17.7 5.0 38 126-163 15-52 (69)
211 PRK05793 amidophosphoribosyltr 26.4 1E+02 0.0022 27.0 4.0 33 136-168 352-387 (469)
212 PF13738 Pyr_redox_3: Pyridine 26.4 77 0.0017 23.3 3.0 32 136-169 166-197 (203)
213 PRK13107 preprotein translocas 26.4 1.1E+02 0.0023 29.2 4.3 41 134-175 446-486 (908)
214 TIGR01744 XPRTase xanthine pho 26.3 1.9E+02 0.0041 21.9 5.1 49 134-182 114-172 (191)
215 TIGR03714 secA2 accessory Sec 26.2 1.6E+02 0.0036 27.5 5.5 39 135-174 422-460 (762)
216 TIGR00246 tRNA_RlmH_YbeA rRNA 26.1 1.1E+02 0.0023 22.4 3.6 47 127-175 56-107 (153)
217 PRK08525 amidophosphoribosyltr 25.9 95 0.0021 26.9 3.8 33 136-168 339-374 (445)
218 cd05568 PTS_IIB_bgl_like PTS_I 25.5 1.1E+02 0.0024 19.0 3.3 22 139-160 2-24 (85)
219 COG0373 HemA Glutamyl-tRNA red 25.5 1.5E+02 0.0033 25.5 4.9 35 136-171 177-211 (414)
220 PF08704 GCD14: tRNA methyltra 25.5 46 0.00099 26.4 1.7 46 124-169 125-171 (247)
221 PF13399 LytR_C: LytR cell env 25.4 1.5E+02 0.0032 19.0 3.9 28 137-164 3-32 (90)
222 PLN02541 uracil phosphoribosyl 25.1 1.5E+02 0.0033 23.5 4.5 33 135-167 155-192 (244)
223 TIGR01090 apt adenine phosphor 25.1 1.2E+02 0.0026 22.2 3.8 31 135-165 107-140 (169)
224 PLN02369 ribose-phosphate pyro 24.9 1.2E+02 0.0026 24.7 4.1 34 136-169 201-237 (302)
225 PRK06917 hypothetical protein; 24.8 1.4E+02 0.003 25.7 4.6 48 129-176 82-137 (447)
226 PRK06388 amidophosphoribosyltr 24.5 1E+02 0.0022 27.0 3.8 33 136-168 355-390 (474)
227 PRK09427 bifunctional indole-3 24.5 2.9E+02 0.0064 24.1 6.5 87 75-164 143-234 (454)
228 cd00047 PTPc Protein tyrosine 24.3 62 0.0013 24.8 2.2 18 136-153 165-183 (231)
229 PTZ00145 phosphoribosylpyropho 24.2 1.1E+02 0.0024 26.6 3.8 33 136-168 334-369 (439)
230 PRK14027 quinate/shikimate deh 24.2 1.4E+02 0.003 24.1 4.3 33 137-170 127-159 (283)
231 PRK12549 shikimate 5-dehydroge 24.2 1.4E+02 0.003 24.0 4.3 33 137-170 127-159 (284)
232 PF04122 CW_binding_2: Putativ 24.1 90 0.002 20.2 2.7 35 136-173 49-83 (92)
233 PRK00129 upp uracil phosphorib 24.0 1.4E+02 0.0031 22.8 4.1 30 137-166 124-156 (209)
234 PRK04914 ATP-dependent helicas 23.9 1.2E+02 0.0026 29.2 4.3 36 137-173 493-529 (956)
235 TIGR01091 upp uracil phosphori 23.9 1.4E+02 0.0031 22.7 4.1 30 137-166 122-154 (207)
236 PRK01297 ATP-dependent RNA hel 23.7 1.1E+02 0.0025 26.3 3.9 37 137-174 335-371 (475)
237 PF14566 PTPlike_phytase: Inos 23.6 1.9E+02 0.0042 20.7 4.6 30 122-151 106-139 (149)
238 PRK09694 helicase Cas3; Provis 23.4 2E+02 0.0043 27.5 5.6 50 124-173 547-598 (878)
239 TIGR01203 HGPRTase hypoxanthin 23.4 1.4E+02 0.003 22.0 3.8 32 136-167 83-117 (166)
240 cd03028 GRX_PICOT_like Glutare 23.3 1.5E+02 0.0032 19.1 3.6 27 137-163 7-39 (90)
241 KOG0352 ATP-dependent DNA heli 23.1 64 0.0014 28.2 2.1 42 140-182 258-308 (641)
242 PLN02347 GMP synthetase 23.0 2.2E+02 0.0047 25.5 5.5 45 127-172 219-266 (536)
243 PF01451 LMWPc: Low molecular 22.9 58 0.0013 22.7 1.7 29 147-175 9-41 (138)
244 PRK13811 orotate phosphoribosy 22.9 2.4E+02 0.0052 20.8 5.0 48 136-183 103-159 (170)
245 TIGR01134 purF amidophosphorib 22.7 1.3E+02 0.0029 25.9 4.1 35 136-170 337-374 (442)
246 TIGR02356 adenyl_thiF thiazole 22.5 1.8E+02 0.004 22.0 4.5 34 137-171 21-54 (202)
247 PLN02440 amidophosphoribosyltr 22.5 1.2E+02 0.0025 26.7 3.7 34 136-169 339-375 (479)
248 PRK06827 phosphoribosylpyropho 22.4 1.4E+02 0.0029 25.5 4.0 32 136-167 263-297 (382)
249 COG5350 Predicted protein tyro 22.1 1.1E+02 0.0023 22.8 2.8 66 88-153 34-110 (172)
250 PF03848 TehB: Tellurite resis 21.9 2.3E+02 0.005 21.5 4.8 44 125-173 20-63 (192)
251 PRK07322 adenine phosphoribosy 21.9 1.6E+02 0.0034 21.9 3.9 31 136-166 119-152 (178)
252 PRK02304 adenine phosphoribosy 21.8 1.8E+02 0.0039 21.4 4.2 31 135-165 112-145 (175)
253 PRK08384 thiamine biosynthesis 21.8 1.1E+02 0.0024 26.0 3.3 53 89-163 153-206 (381)
254 PF10903 DUF2691: Protein of u 21.7 2.9E+02 0.0062 20.3 5.0 84 71-169 53-142 (153)
255 PRK09219 xanthine phosphoribos 21.6 2.7E+02 0.0058 21.0 5.1 49 134-182 114-172 (189)
256 COG0169 AroE Shikimate 5-dehyd 21.4 1.8E+02 0.0038 23.7 4.3 33 137-170 126-158 (283)
257 PRK00121 trmB tRNA (guanine-N( 21.2 2.4E+02 0.0053 21.2 4.9 49 123-172 135-183 (202)
258 PRK12904 preprotein translocas 21.1 2.4E+02 0.0053 26.7 5.6 38 135-173 428-465 (830)
259 PRK06916 adenosylmethionine--8 21.0 1.8E+02 0.0038 25.2 4.5 47 130-176 108-162 (460)
260 COG1798 DPH5 Diphthamide biosy 21.0 2.8E+02 0.006 22.3 5.1 53 76-149 147-210 (260)
261 PRK05639 4-aminobutyrate amino 21.0 1.6E+02 0.0034 25.5 4.2 38 139-176 114-153 (457)
262 TIGR00342 thiazole biosynthesi 21.0 1.2E+02 0.0027 25.4 3.5 28 136-163 171-198 (371)
263 PLN02297 ribose-phosphate pyro 20.9 1.4E+02 0.003 24.8 3.7 32 136-167 229-263 (326)
264 PTZ00424 helicase 45; Provisio 20.9 1.5E+02 0.0032 24.7 4.0 36 137-173 267-302 (401)
265 PF07879 PHB_acc_N: PHB/PHA ac 20.8 1.1E+02 0.0023 19.0 2.3 27 72-98 17-45 (64)
266 PRK02812 ribose-phosphate pyro 20.7 1.4E+02 0.0031 24.8 3.7 33 136-168 229-264 (330)
267 TIGR00365 monothiol glutaredox 20.5 1.8E+02 0.0039 19.2 3.6 27 137-163 11-43 (97)
268 PF02254 TrkA_N: TrkA-N domain 20.5 1.6E+02 0.0035 19.5 3.5 22 138-163 22-43 (116)
269 TIGR02354 thiF_fam2 thiamine b 20.4 2E+02 0.0044 21.8 4.3 32 139-171 23-54 (200)
270 PF09554 RE_HaeII: HaeII restr 20.4 1.8E+02 0.0038 23.7 4.0 40 122-163 238-277 (338)
271 PF13580 SIS_2: SIS domain; PD 20.2 2.6E+02 0.0056 19.6 4.6 39 125-163 90-132 (138)
272 TIGR02190 GlrX-dom Glutaredoxi 20.1 2.3E+02 0.005 17.5 4.0 29 135-163 5-34 (79)
273 PF11181 YflT: Heat induced st 20.1 1.8E+02 0.0038 19.4 3.5 7 140-146 29-35 (103)
274 PF10740 DUF2529: Protein of u 20.1 3.9E+02 0.0084 20.1 6.9 66 84-163 36-110 (172)
275 PRK12550 shikimate 5-dehydroge 20.1 2.1E+02 0.0045 23.0 4.5 35 135-170 120-154 (272)
276 COG1926 Predicted phosphoribos 20.1 4.3E+02 0.0094 20.6 8.2 32 136-167 123-157 (220)
No 1
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.93 E-value=6.7e-26 Score=158.03 Aligned_cols=115 Identities=41% Similarity=0.701 Sum_probs=105.0
Q ss_pred CCCCcccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCC-CCeEEEEcCC
Q 029984 69 VGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK-HDEIIVGCQS 146 (184)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ivv~c~~ 146 (184)
...+.+++.++++++.+.+ +++||||+++||..||+|.++|||+......+.+.+++|.+......++ ++.|||+|.+
T Consensus 19 ~~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~S 98 (136)
T KOG1530|consen 19 ASNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCAS 98 (136)
T ss_pred cCCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEecc
Confidence 4567789999999999887 9999999999999999999999999877778888999999998877765 5599999999
Q ss_pred ChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984 147 GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183 (184)
Q Consensus 147 g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~ 183 (184)
|.||..+...|..+||+||.+|.|||.+|.+.|+|..
T Consensus 99 G~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 99 GVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred CcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 9999999999999999999999999999999998764
No 2
>PLN02160 thiosulfate sulfurtransferase
Probab=99.93 E-value=1.8e-25 Score=161.66 Aligned_cols=113 Identities=45% Similarity=0.819 Sum_probs=95.3
Q ss_pred CcccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCc--EEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChh
Q 029984 72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 149 (184)
Q Consensus 72 ~~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~r 149 (184)
...++++++.++++++..|||||++.||..|||||| +|+|+..+...+.+.+.+++......++++++||+||++|.|
T Consensus 14 ~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG~R 93 (136)
T PLN02160 14 VVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSGAR 93 (136)
T ss_pred eeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCcHH
Confidence 446788899988887788999999999999999999 899975443334444555555555546788999999999999
Q ss_pred HHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984 150 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 184 (184)
Q Consensus 150 s~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 184 (184)
|..++..|...||++|++|.|||.+|.++|+|+++
T Consensus 94 S~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 128 (136)
T PLN02160 94 SLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQ 128 (136)
T ss_pred HHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccc
Confidence 99999999999999999999999999999999864
No 3
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.92 E-value=1.6e-24 Score=148.34 Aligned_cols=98 Identities=31% Similarity=0.488 Sum_probs=85.6
Q ss_pred cccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHH
Q 029984 73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 152 (184)
Q Consensus 73 ~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~ 152 (184)
..++++++.++++++.+|||+|+++||..+|||||+|+|+. .+......++++++||+||++|.++..
T Consensus 2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~iv~~c~~g~~s~~ 69 (99)
T cd01527 2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLS------------QLESEGLPLVGANAIIFHCRSGMRTQQ 69 (99)
T ss_pred CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChh------------HhcccccCCCCCCcEEEEeCCCchHHH
Confidence 35788899888887789999999999999999999999984 222222346888999999999999999
Q ss_pred HHHHHHHccCCCeeeccccHHHHHhCCCCC
Q 029984 153 AATDLLNAGFAGITDIAGGFAAWRQNGLPT 182 (184)
Q Consensus 153 ~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~ 182 (184)
++..|.+.||+++++|+||+.+|+..|+|+
T Consensus 70 ~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 70 NAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred HHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 999999999999999999999999999885
No 4
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.92 E-value=3.6e-24 Score=149.20 Aligned_cols=98 Identities=23% Similarity=0.371 Sum_probs=83.3
Q ss_pred CCCcccCHHHHHHHHhCC--CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEcC
Q 029984 70 GVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQ 145 (184)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~--~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~ 145 (184)
.....++++++.++++++ .+|||||++.||..||||||+|+|+. .+......+ +++++|||||.
T Consensus 7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~------------~l~~~~~~l~~~~~~~ivv~C~ 74 (109)
T cd01533 7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGA------------ELVLRVGELAPDPRTPIVVNCA 74 (109)
T ss_pred ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHH------------HHHHHHHhcCCCCCCeEEEECC
Confidence 344578889999888754 68999999999999999999999983 444444444 45789999999
Q ss_pred CChhHHHHHHHHHHccCCC-eeeccccHHHHHhCC
Q 029984 146 SGKRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNG 179 (184)
Q Consensus 146 ~g~rs~~~~~~L~~~G~~~-v~~l~GG~~~W~~~g 179 (184)
+|.||..+++.|...||+| +++|+||+.+|..+|
T Consensus 75 ~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 75 GRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 9999999999999999988 899999999999876
No 5
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.91 E-value=7.2e-24 Score=147.41 Aligned_cols=101 Identities=32% Similarity=0.497 Sum_probs=89.1
Q ss_pred CcccCHHHHHHHHhC-CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhH
Q 029984 72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150 (184)
Q Consensus 72 ~~~i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs 150 (184)
...++++++.+.+++ +.++||+|++.||..||||||+|+|+ ..+......++++++++|||.+|.+|
T Consensus 4 ~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~------------~~l~~~~~~~~~~~~ivv~c~~g~~s 71 (108)
T PRK00162 4 FECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTN------------DSLGAFMRQADFDTPVMVMCYHGNSS 71 (108)
T ss_pred ccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCH------------HHHHHHHHhcCCCCCEEEEeCCCCCH
Confidence 456788899888754 57899999999999999999999998 34555556678899999999999999
Q ss_pred HHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984 151 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 184 (184)
Q Consensus 151 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 184 (184)
..++..|+..||+|+++++||+.+|.+.++|++.
T Consensus 72 ~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~ 105 (108)
T PRK00162 72 QGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA 105 (108)
T ss_pred HHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence 9999999999999999999999999999999863
No 6
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.90 E-value=4.4e-24 Score=146.74 Aligned_cols=98 Identities=24% Similarity=0.337 Sum_probs=78.5
Q ss_pred ccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHH
Q 029984 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 152 (184)
Q Consensus 74 ~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~ 152 (184)
.++++++.++++++ .+|||||++.||..||||||+|||+..+. ...+.+... ..++++++|||||++|.||..
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~-----~~~~~~~~~-~~~~~~~~ivvyC~~G~rs~~ 76 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFR-----EFPFWLDEN-LDLLKGKKVLMYCTGGIRCEK 76 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHh-----HhHHHHHhh-hhhcCCCEEEEECCCchhHHH
Confidence 46788888887654 78999999999999999999999984211 001112211 123788999999999999999
Q ss_pred HHHHHHHccCCCeeeccccHHHHHh
Q 029984 153 AATDLLNAGFAGITDIAGGFAAWRQ 177 (184)
Q Consensus 153 ~~~~L~~~G~~~v~~l~GG~~~W~~ 177 (184)
++..|...||++|++|+||+.+|.+
T Consensus 77 a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 77 ASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred HHHHHHHhCCcceeeechhHHHHhC
Confidence 9999999999999999999999963
No 7
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.89 E-value=1.2e-22 Score=141.71 Aligned_cols=98 Identities=27% Similarity=0.489 Sum_probs=83.9
Q ss_pred CcccCHHHHHHHHhCC---CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHH-HHHhcCCCCCeEEEEcCCC
Q 029984 72 PTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHDEIIVGCQSG 147 (184)
Q Consensus 72 ~~~i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ivv~c~~g 147 (184)
...++++++.+++..+ .+|||+|++.+|..||||||+|+|.. .+. +....++++++|||||++|
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~~i~~~~~vvvyc~~g 74 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHR------------EICENATAKLDKEKLFVVYCDGP 74 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHH------------HhhhHhhhcCCCCCeEEEEECCC
Confidence 3457888888888643 78999999999999999999999983 232 4456678899999999987
Q ss_pred h--hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCC
Q 029984 148 K--RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 182 (184)
Q Consensus 148 ~--rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~ 182 (184)
. ++..+++.|++.||+ +++|+||+.+|+.+|+|+
T Consensus 75 ~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 75 GCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred CCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 4 899999999999995 999999999999999985
No 8
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.89 E-value=1.2e-22 Score=136.71 Aligned_cols=88 Identities=34% Similarity=0.600 Sum_probs=78.5
Q ss_pred CHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHH
Q 029984 76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAAT 155 (184)
Q Consensus 76 ~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~ 155 (184)
+++++.+++.++.++||+|++++|..||||||+|+|+ ..+......++++++||+||.+|.++..++.
T Consensus 2 ~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~------------~~~~~~~~~~~~~~~vvl~c~~g~~a~~~a~ 69 (90)
T cd01524 2 QWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPL------------DELRDRLNELPKDKEIIVYCAVGLRGYIAAR 69 (90)
T ss_pred CHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCH------------HHHHHHHHhcCCCCcEEEEcCCChhHHHHHH
Confidence 5678888887778999999999999999999999998 3445555567888999999999999999999
Q ss_pred HHHHccCCCeeeccccHHHHH
Q 029984 156 DLLNAGFAGITDIAGGFAAWR 176 (184)
Q Consensus 156 ~L~~~G~~~v~~l~GG~~~W~ 176 (184)
.|++.|+ ++++|+||+.+|+
T Consensus 70 ~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 70 ILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HHHHCCC-CEEEecCCHHHhc
Confidence 9999999 8999999999996
No 9
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.89 E-value=8.7e-23 Score=139.97 Aligned_cols=97 Identities=26% Similarity=0.400 Sum_probs=78.0
Q ss_pred cCHHHHHHHHhCC--CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHH
Q 029984 75 VPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 152 (184)
Q Consensus 75 i~~~~~~~~~~~~--~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~ 152 (184)
++++++.++++++ .+|||||+++||..||||||+|+|+...... + ..........++++++|||||.+|.||..
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~-~---~~~~~~~~~~~~~~~~ivv~C~~G~rs~~ 76 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFD-F---LEIEEDILDQLPDDQEVTVICAKEGSSQF 76 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHH-H---HHhhHHHHhhCCCCCeEEEEcCCCCcHHH
Confidence 4677888877653 7899999999999999999999998421100 0 00013345667889999999999999999
Q ss_pred HHHHHHHccCCCeeeccccHHHHH
Q 029984 153 AATDLLNAGFAGITDIAGGFAAWR 176 (184)
Q Consensus 153 ~~~~L~~~G~~~v~~l~GG~~~W~ 176 (184)
++..|.+.||+ ++.|.||+.+|.
T Consensus 77 aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 77 VAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred HHHHHHHcCce-eEEeCCcHHhhc
Confidence 99999999998 999999999996
No 10
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.89 E-value=4.3e-22 Score=147.97 Aligned_cols=108 Identities=21% Similarity=0.302 Sum_probs=82.5
Q ss_pred CcccCHHHHHHHHhCC-CeEEEcCChh----hHhcC---------CCCCcEEeccccccCCCCCC--CHHHHHHHHhc--
Q 029984 72 PTSVPVRVAHELLQAG-HRYLDVRTPE----EFSAG---------HATGAINVPYMYRVGSGMTK--NLKFVEEVSTR-- 133 (184)
Q Consensus 72 ~~~i~~~~~~~~~~~~-~~liDvR~~~----e~~~g---------hIpgAi~ip~~~~~~~~~~~--~~~~~~~~~~~-- 133 (184)
...++++++.++++++ .+|||||+++ ||..| |||||+|+|+... +.+. ....+...+..
T Consensus 35 ~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~---~~l~~~~~~~~~~~l~~~~ 111 (162)
T TIGR03865 35 ARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGY---GNLAPAWQAYFRRGLERAT 111 (162)
T ss_pred ccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCC---CCCCCchhHHHHHHHHHhc
Confidence 3457889999888765 8899999876 45544 9999999996211 1111 11223333322
Q ss_pred -CCCCCeEEEEcCCCh-hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCC
Q 029984 134 -FRKHDEIIVGCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 182 (184)
Q Consensus 134 -l~~~~~ivv~c~~g~-rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~ 182 (184)
.+++++||+||.+|. +|..+++.|+.+||++|++|+||+.+|+.+|+|+
T Consensus 112 ~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 112 GGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 268899999999986 8999999999999999999999999999999986
No 11
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.88 E-value=2.4e-22 Score=142.73 Aligned_cols=108 Identities=30% Similarity=0.401 Sum_probs=84.5
Q ss_pred CCCcccCHHHHHHHHhC--CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHH---HHhcCCCCCeEEEEc
Q 029984 70 GVPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE---VSTRFRKHDEIIVGC 144 (184)
Q Consensus 70 ~~~~~i~~~~~~~~~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~---~~~~l~~~~~ivv~c 144 (184)
+....++++++.+++.+ +.+|||+|++.||..+|||||+|||+..+... ...+.. ....++++++||+||
T Consensus 5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~-----~~~~~~~~~~~~~~~~~~~ivv~C 79 (122)
T cd01526 5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSK-----AAELKSLQELPLDNDKDSPIYVVC 79 (122)
T ss_pred CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhh-----hhhhhhhhhcccccCCCCcEEEEC
Confidence 34557888999888865 47899999999999999999999998422110 000000 112347889999999
Q ss_pred CCChhHHHHHHHHHHccC-CCeeeccccHHHHHhCCCCC
Q 029984 145 QSGKRSMMAATDLLNAGF-AGITDIAGGFAAWRQNGLPT 182 (184)
Q Consensus 145 ~~g~rs~~~~~~L~~~G~-~~v~~l~GG~~~W~~~g~p~ 182 (184)
++|.||..++..|.+.|| ++++.|+||+.+|..+..+.
T Consensus 80 ~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 80 RRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred CCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence 999999999999999999 78999999999999876543
No 12
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.88 E-value=2e-22 Score=144.31 Aligned_cols=102 Identities=28% Similarity=0.485 Sum_probs=78.8
Q ss_pred cCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCC----C------------------CCHHHHHHHH-
Q 029984 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGM----T------------------KNLKFVEEVS- 131 (184)
Q Consensus 75 i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~----~------------------~~~~~~~~~~- 131 (184)
++++++.++++++.+|||||++.||..||||||+|||+........ . ..++++....
T Consensus 1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd01520 1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAWE 80 (128)
T ss_pred CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4678888888877899999999999999999999999843211000 0 0011122221
Q ss_pred hcCCCCCeEEEEcC-CChhHHHHHHHHHHccCCCeeeccccHHHHHh
Q 029984 132 TRFRKHDEIIVGCQ-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 177 (184)
Q Consensus 132 ~~l~~~~~ivv~c~-~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~ 177 (184)
..++++++|||||+ +|.||..+++.|+.+|| ++++|+||+.+|+.
T Consensus 81 ~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 81 ARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 35789999999997 68899999999999999 69999999999975
No 13
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.88 E-value=2.2e-22 Score=136.84 Aligned_cols=90 Identities=29% Similarity=0.388 Sum_probs=73.5
Q ss_pred cCHHHHHHHHhCC---CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC-CCCCeEEEEcCCChhH
Q 029984 75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEIIVGCQSGKRS 150 (184)
Q Consensus 75 i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ivv~c~~g~rs 150 (184)
++++++.+++.++ +++||||++.||..||||||+|+|+. +......... .++++||+||.+|.||
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~-----------~l~~~~~~~~~~~~~~iv~~c~~G~rs 69 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGG-----------QLVQETDHFAPVRGARIVLADDDGVRA 69 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHH-----------HHHHHHHHhcccCCCeEEEECCCCChH
Confidence 4667888877653 67999999999999999999999983 2222222222 2467899999999999
Q ss_pred HHHHHHHHHccCCCeeeccccHHHHH
Q 029984 151 MMAATDLLNAGFAGITDIAGGFAAWR 176 (184)
Q Consensus 151 ~~~~~~L~~~G~~~v~~l~GG~~~W~ 176 (184)
..++..|...||+ +++|+||+.+|.
T Consensus 70 ~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 70 DMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred HHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 9999999999998 999999999996
No 14
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.88 E-value=1.6e-22 Score=139.77 Aligned_cols=101 Identities=26% Similarity=0.403 Sum_probs=80.0
Q ss_pred CHHHHHHHHh-C-CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCChhHH
Q 029984 76 PVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSM 151 (184)
Q Consensus 76 ~~~~~~~~~~-~-~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~rs~ 151 (184)
+.+++.++++ + +.+|||+|++.||..||||||+|+|+..+... ....++.+...+.. ++++++||+||++|.+|.
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~ 80 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDA-LALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSK 80 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhh-hCCCHHHHHHHhcccCCCCCCeEEEECCCcHHHH
Confidence 4567777776 4 48899999999999999999999998643222 12233344444432 357889999999999999
Q ss_pred HHHHHHHHccCCCeeeccccHHHHHh
Q 029984 152 MAATDLLNAGFAGITDIAGGFAAWRQ 177 (184)
Q Consensus 152 ~~~~~L~~~G~~~v~~l~GG~~~W~~ 177 (184)
.+++.|...||+||++|+||+.+|.+
T Consensus 81 ~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 81 AAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred HHHHHHHHcCCccceecCCcHHHHcC
Confidence 99999999999999999999999963
No 15
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.88 E-value=3.3e-22 Score=137.37 Aligned_cols=92 Identities=32% Similarity=0.543 Sum_probs=77.6
Q ss_pred cCHHHHHHHHhCC---CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC---CCCCeEEEEcCCCh
Q 029984 75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF---RKHDEIIVGCQSGK 148 (184)
Q Consensus 75 i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l---~~~~~ivv~c~~g~ 148 (184)
++++++.+++..+ .++||+|+++||..+|||||+|+|+. .+......+ ++++++|+||++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~------------~~~~~~~~~~~~~~~~~vv~~c~~g~ 69 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMS------------EIPERSKELDSDNPDKDIVVLCHHGG 69 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHH------------HHHHHHHHhcccCCCCeEEEEeCCCc
Confidence 5677888877654 78999999999999999999999983 222233333 35899999999999
Q ss_pred hHHHHHHHHHHccCCCeeeccccHHHHHhC
Q 029984 149 RSMMAATDLLNAGFAGITDIAGGFAAWRQN 178 (184)
Q Consensus 149 rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 178 (184)
+|..++..|.+.||+++++|+||+.+|...
T Consensus 70 rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 70 RSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred hHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 999999999999999999999999999764
No 16
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.88 E-value=4.1e-22 Score=135.29 Aligned_cols=90 Identities=34% Similarity=0.598 Sum_probs=80.0
Q ss_pred cCHHHHHHHHhC--CCeEEEcCChhhHhc--CCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhH
Q 029984 75 VPVRVAHELLQA--GHRYLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150 (184)
Q Consensus 75 i~~~~~~~~~~~--~~~liDvR~~~e~~~--ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs 150 (184)
++++++.+++++ +.++||+|++.||.. ||||||+|+|+ ..+......++++++|||||.+|.+|
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~------------~~~~~~~~~~~~~~~ivv~c~~g~~s 69 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDE------------DSLDDWLGDLDRDRPVVVYCYHGNSS 69 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCH------------HHHHHHHhhcCCCCCEEEEeCCCChH
Confidence 567788887765 388999999999999 99999999998 34555566688999999999999999
Q ss_pred HHHHHHHHHccCCCeeeccccHHHHH
Q 029984 151 MMAATDLLNAGFAGITDIAGGFAAWR 176 (184)
Q Consensus 151 ~~~~~~L~~~G~~~v~~l~GG~~~W~ 176 (184)
..+++.|+..||++|++|+||+.+|.
T Consensus 70 ~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 70 AQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred HHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 99999999999999999999999996
No 17
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.88 E-value=3.8e-22 Score=137.10 Aligned_cols=101 Identities=28% Similarity=0.444 Sum_probs=77.5
Q ss_pred cCHHHHHHHHhC-CCeEEEcCChhhH-hcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHH
Q 029984 75 VPVRVAHELLQA-GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 152 (184)
Q Consensus 75 i~~~~~~~~~~~-~~~liDvR~~~e~-~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~ 152 (184)
++++++.+++++ +.+|||+|++.+| ..||||||+|+|+..+.. ....... .....++++++|||||.+|.++..
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~--~~~~~~~--~~~~~~~~~~~ivv~c~~g~~s~~ 76 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEF--WADPDSP--YHKPAFAEDKPFVFYCASGWRSAL 76 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhh--hcCcccc--ccccCCCCCCeEEEEcCCCCcHHH
Confidence 466788887764 5789999999998 579999999999742110 0000000 001136789999999999999999
Q ss_pred HHHHHHHccCCCeeeccccHHHHHhCC
Q 029984 153 AATDLLNAGFAGITDIAGGFAAWRQNG 179 (184)
Q Consensus 153 ~~~~L~~~G~~~v~~l~GG~~~W~~~g 179 (184)
+++.|...||++|++|+||+.+|..+|
T Consensus 77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 77 AGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred HHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 999999999999999999999998765
No 18
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.88 E-value=8.4e-22 Score=139.68 Aligned_cols=105 Identities=24% Similarity=0.285 Sum_probs=88.1
Q ss_pred cCHHHHHHHHhC-CCeEEEcCCh-------hhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHHhc--CCCCCe
Q 029984 75 VPVRVAHELLQA-GHRYLDVRTP-------EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDE 139 (184)
Q Consensus 75 i~~~~~~~~~~~-~~~liDvR~~-------~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--l~~~~~ 139 (184)
++++++.+++.+ +.+|||+|++ .+|..||||||+|+|+..+.. .+++.+.+.+...+.. ++++++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT 81 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence 567888888766 5789999999 999999999999999865432 3456666666666553 678999
Q ss_pred EEEEcCC-ChhHHHHHHHHHHccCCCeeeccccHHHHHhCC
Q 029984 140 IIVGCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 179 (184)
Q Consensus 140 ivv~c~~-g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g 179 (184)
|||||++ |.++..+++.|+..||++|++|+||+.+|.++|
T Consensus 82 vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 82 VVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 9999998 589999999999999999999999999999875
No 19
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.87 E-value=6.4e-22 Score=144.55 Aligned_cols=91 Identities=25% Similarity=0.381 Sum_probs=80.8
Q ss_pred HHHHhCC--CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHH
Q 029984 81 HELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL 158 (184)
Q Consensus 81 ~~~~~~~--~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~ 158 (184)
.+++.++ ++|||||++.+|..||||||+|+|. ..+......++++++|||||.+|.+|..+++.|+
T Consensus 3 ~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~------------~~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~ 70 (145)
T cd01535 3 AAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLR------------AQLAQALEKLPAAERYVLTCGSSLLARFAAADLA 70 (145)
T ss_pred HHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCH------------HHHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHH
Confidence 3445443 6899999999999999999999997 5666666677888999999999999999999999
Q ss_pred HccCCCeeeccccHHHHHhCCCCCC
Q 029984 159 NAGFAGITDIAGGFAAWRQNGLPTE 183 (184)
Q Consensus 159 ~~G~~~v~~l~GG~~~W~~~g~p~~ 183 (184)
..|+++|++|+||+.+|+.+|+|++
T Consensus 71 ~~G~~~v~~L~GG~~aW~~~g~pl~ 95 (145)
T cd01535 71 ALTVKPVFVLEGGTAAWIAAGLPVE 95 (145)
T ss_pred HcCCcCeEEecCcHHHHHHCCCCcc
Confidence 9999999999999999999999986
No 20
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.87 E-value=1.3e-21 Score=157.57 Aligned_cols=141 Identities=21% Similarity=0.346 Sum_probs=105.3
Q ss_pred ceeeecCCCccccccccc-cCccc-c-------cC-CCCcccCHHHHHHHHhC-CCeEEEcCChhhHh-----------c
Q 029984 44 DNIGFISSKILSFCPKAS-LRGNL-E-------AV-GVPTSVPVRVAHELLQA-GHRYLDVRTPEEFS-----------A 101 (184)
Q Consensus 44 ~~~~~l~~~~~~~~~~~~-~~~~~-~-------~~-~~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~-----------~ 101 (184)
..+.+++|++..|..... ..... . .. ......+.+++...+++ +.+|||+|++.||. .
T Consensus 114 ~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~ 193 (281)
T PRK11493 114 EKVSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRR 193 (281)
T ss_pred CcEEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCccc
Confidence 345689999999975211 11100 0 00 01122344555544444 47899999999995 6
Q ss_pred CCCCCcEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHh-C
Q 029984 102 GHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ-N 178 (184)
Q Consensus 102 ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~-~ 178 (184)
||||||+|+|+..+...+.+..++.++..+.. ++++++||+||++|.+|..++..|+.+||+|+++|+|||.+|.. .
T Consensus 194 GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~ 273 (281)
T PRK11493 194 GHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARA 273 (281)
T ss_pred ccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCC
Confidence 99999999998766555566777788777654 67889999999999999999999999999999999999999998 6
Q ss_pred CCCCCC
Q 029984 179 GLPTEP 184 (184)
Q Consensus 179 g~p~~~ 184 (184)
++|+++
T Consensus 274 ~~P~~~ 279 (281)
T PRK11493 274 DLPVEP 279 (281)
T ss_pred CCCcCC
Confidence 999874
No 21
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.87 E-value=8e-22 Score=136.15 Aligned_cols=100 Identities=25% Similarity=0.389 Sum_probs=75.9
Q ss_pred cCHHHHHHHHhC---CCeEEEcCChhhHhcCCCCCcEEeccccccCC-CCCCCHHHHHHHHhcCCCCCeEEEEcCCChhH
Q 029984 75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150 (184)
Q Consensus 75 i~~~~~~~~~~~---~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs 150 (184)
++++++++++.+ +++|||||++.||..||||||+|+|+...... .....-.....+.. .++++||+||.+|.+|
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~~c~~g~~s 78 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVPRLEN--YKGKIIVIVSHSHKHA 78 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchHHHHh--hcCCeEEEEeCCCccH
Confidence 467888888875 37899999999999999999999998533211 01000000111111 2478999999999999
Q ss_pred HHHHHHHHHccCCCeeeccccHHHHH
Q 029984 151 MMAATDLLNAGFAGITDIAGGFAAWR 176 (184)
Q Consensus 151 ~~~~~~L~~~G~~~v~~l~GG~~~W~ 176 (184)
..+++.|...||++|++|+||+.+|+
T Consensus 79 ~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 79 ALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred HHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 99999999999999999999999995
No 22
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.86 E-value=1.7e-21 Score=137.27 Aligned_cols=103 Identities=24% Similarity=0.451 Sum_probs=85.0
Q ss_pred cCHHHHHHHHhCC-CeEEEcCChhhHhc-----------CCCCCcEEeccccccCC-CCCCCHHHHHHHHhc--CCCCCe
Q 029984 75 VPVRVAHELLQAG-HRYLDVRTPEEFSA-----------GHATGAINVPYMYRVGS-GMTKNLKFVEEVSTR--FRKHDE 139 (184)
Q Consensus 75 i~~~~~~~~~~~~-~~liDvR~~~e~~~-----------ghIpgAi~ip~~~~~~~-~~~~~~~~~~~~~~~--l~~~~~ 139 (184)
++++++.++++++ .+|||+|++.||.. ||||||+|+|+..+... +.+..++.+...+.. ++++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP 80 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence 3567788777654 89999999999987 99999999998654322 344566677766654 468899
Q ss_pred EEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHh
Q 029984 140 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 177 (184)
Q Consensus 140 ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~ 177 (184)
||+||++|.+|..+++.|..+||+++++|+||+.+|.+
T Consensus 81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 99999999999999999999999999999999999963
No 23
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.86 E-value=2.3e-21 Score=137.57 Aligned_cols=92 Identities=28% Similarity=0.402 Sum_probs=77.0
Q ss_pred ccCHHHHHHHHhC-------CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHh------cCCCCCeE
Q 029984 74 SVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST------RFRKHDEI 140 (184)
Q Consensus 74 ~i~~~~~~~~~~~-------~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~------~l~~~~~i 140 (184)
.++++++.+++++ +++|||||++.||..||||||+|||.. +.+..... .++++++|
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~-----------~~l~~~~~~~~~~~~~~~~~~v 71 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTK-----------DELEEFFLDKPGVASKKKRRVL 71 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcH-----------HHHHHHHHHhhcccccCCCCEE
Confidence 4788888888764 478999999999999999999999983 22333222 26789999
Q ss_pred EEEcC-CChhHHHHHHHHHHc------------cCCCeeeccccHHHHH
Q 029984 141 IVGCQ-SGKRSMMAATDLLNA------------GFAGITDIAGGFAAWR 176 (184)
Q Consensus 141 vv~c~-~g~rs~~~~~~L~~~------------G~~~v~~l~GG~~~W~ 176 (184)
|+||. +|.||..+++.|++. ||.+|++|+||+.+|-
T Consensus 72 v~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 72 IFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred EEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 99997 999999999999985 9999999999999983
No 24
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.86 E-value=3.2e-21 Score=130.56 Aligned_cols=96 Identities=33% Similarity=0.557 Sum_probs=75.6
Q ss_pred CCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHH--HhcCCCCCeEEEEcCCChhHHHHHHHHHHccCC
Q 029984 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV--STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 163 (184)
Q Consensus 86 ~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~ 163 (184)
++.+|||+|++.||..+|||||+|+|...............+... ...++++++||+||.+|.++..+++.|.+.||+
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 457899999999999999999999998643322111111111221 233578899999999999999999999999999
Q ss_pred CeeeccccHHHHHhCCCC
Q 029984 164 GITDIAGGFAAWRQNGLP 181 (184)
Q Consensus 164 ~v~~l~GG~~~W~~~g~p 181 (184)
+|++|+||+.+|...|.|
T Consensus 83 ~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 83 NVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred ceEEecCCHHHHHhcCCC
Confidence 999999999999998865
No 25
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.86 E-value=2e-21 Score=137.12 Aligned_cols=102 Identities=28% Similarity=0.428 Sum_probs=82.5
Q ss_pred cCHHHHHHHHhC--CCeEEEcCChhhHh-cCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHH
Q 029984 75 VPVRVAHELLQA--GHRYLDVRTPEEFS-AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM 151 (184)
Q Consensus 75 i~~~~~~~~~~~--~~~liDvR~~~e~~-~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~ 151 (184)
++++++.+++++ +.++||||++.||+ .||||||+|+|+..+... .....+...+...++++++||+||++|.+|.
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs~ 78 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNRSI 78 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCccHH
Confidence 467888888876 48899999999999 999999999998543211 1113344444444578899999999999999
Q ss_pred HHHHHHHHccCCCeeeccccHHHHHhC
Q 029984 152 MAATDLLNAGFAGITDIAGGFAAWRQN 178 (184)
Q Consensus 152 ~~~~~L~~~G~~~v~~l~GG~~~W~~~ 178 (184)
.++..|.+.||++++.|.||+.+|+..
T Consensus 79 ~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 79 AAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred HHHHHHHHCCCCeEEECcCceecCCCC
Confidence 999999999999999999999999663
No 26
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.85 E-value=3.5e-21 Score=131.04 Aligned_cols=86 Identities=24% Similarity=0.399 Sum_probs=70.7
Q ss_pred CCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCe
Q 029984 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGI 165 (184)
Q Consensus 86 ~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v 165 (184)
++.+|||||++.||..+|||||+|+|+..+ ....+.++. +..++++++||+||++|.++..++..|+..||++|
T Consensus 11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~-----~~~~~~~~~-~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v 84 (96)
T cd01529 11 PGTALLDVRAEDEYAAGHLPGKRSIPGAAL-----VLRSQELQA-LEAPGRATRYVLTCDGSLLARFAAQELLALGGKPV 84 (96)
T ss_pred CCeEEEeCCCHHHHcCCCCCCcEeCCHHHh-----cCCHHHHHH-hhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCCE
Confidence 458899999999999999999999997422 112233332 33457889999999999999999999999999999
Q ss_pred eeccccHHHHHh
Q 029984 166 TDIAGGFAAWRQ 177 (184)
Q Consensus 166 ~~l~GG~~~W~~ 177 (184)
++|+||+.+|..
T Consensus 85 ~~l~GG~~~W~~ 96 (96)
T cd01529 85 ALLDGGTSAWVA 96 (96)
T ss_pred EEeCCCHHHhcC
Confidence 999999999963
No 27
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.85 E-value=7.8e-21 Score=151.68 Aligned_cols=141 Identities=23% Similarity=0.406 Sum_probs=110.4
Q ss_pred ceeeecCCCcccccccc-ccCccc---cc------CCCCcccCHHHHHHHHhCC-CeEEEcCChhhHhc----------C
Q 029984 44 DNIGFISSKILSFCPKA-SLRGNL---EA------VGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSA----------G 102 (184)
Q Consensus 44 ~~~~~l~~~~~~~~~~~-~~~~~~---~~------~~~~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~----------g 102 (184)
..+.+|+|++..|.... ..+... .. .......+.++++...+.. .+|||+|++++|.. |
T Consensus 117 ~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~G 196 (285)
T COG2897 117 ENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAG 196 (285)
T ss_pred CceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCC
Confidence 56889999999998732 222111 00 1122345666677666654 77899999999997 9
Q ss_pred CCCCcEEeccccccCC-CCCCCHHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhC-
Q 029984 103 HATGAINVPYMYRVGS-GMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN- 178 (184)
Q Consensus 103 hIpgAi~ip~~~~~~~-~~~~~~~~~~~~~~--~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~- 178 (184)
|||||+|+|+..+... +.+..++.++.+.+ .++++++||+||++|.+|+..+..|+.+|+.+.++|+|+|.+|.+.
T Consensus 197 HIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~ 276 (285)
T COG2897 197 HIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDP 276 (285)
T ss_pred CCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCC
Confidence 9999999999776654 56777888888774 4889999999999999999999999999998889999999999886
Q ss_pred CCCCCC
Q 029984 179 GLPTEP 184 (184)
Q Consensus 179 g~p~~~ 184 (184)
+.|+++
T Consensus 277 ~~PV~~ 282 (285)
T COG2897 277 DRPVET 282 (285)
T ss_pred CCcccc
Confidence 568764
No 28
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.85 E-value=7.4e-21 Score=155.65 Aligned_cols=110 Identities=16% Similarity=0.300 Sum_probs=92.9
Q ss_pred cCHHHHHHHHhC-CCeEEEcCChhhH-----------hcCCCCCcEEecccccc-CCCCCCCHHHHHHHHhc--CCCCCe
Q 029984 75 VPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDE 139 (184)
Q Consensus 75 i~~~~~~~~~~~-~~~liDvR~~~e~-----------~~ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~~--l~~~~~ 139 (184)
++.+++.+.+++ +.+|||+|++.|| ..||||||+|+|+..+. ..+.+.+.+.++..+.. ++++++
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~ 271 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSP 271 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCC
Confidence 567778777654 4789999999998 46999999999986543 34567788888887764 678999
Q ss_pred EEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhC-CCCCCC
Q 029984 140 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN-GLPTEP 184 (184)
Q Consensus 140 ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~-g~p~~~ 184 (184)
||+||++|.+|..+++.|+.+||++|++|+|||.+|... ++|+++
T Consensus 272 iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~ 317 (320)
T PLN02723 272 IVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVAT 317 (320)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccC
Confidence 999999999999999999999999999999999999886 678764
No 29
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.85 E-value=7.8e-21 Score=132.05 Aligned_cols=103 Identities=31% Similarity=0.540 Sum_probs=79.4
Q ss_pred CHHHHHHHH-hCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHH----HHHHHhcCCCCCeEEEEcCCChhH
Q 029984 76 PVRVAHELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF----VEEVSTRFRKHDEIIVGCQSGKRS 150 (184)
Q Consensus 76 ~~~~~~~~~-~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~----~~~~~~~l~~~~~ivv~c~~g~rs 150 (184)
|++++++++ +++.+|||+|++.+|..||||||+|+|+............+. .......++++++||+||..|.++
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~ 80 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS 80 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence 467888888 345899999999999999999999999954422222222222 333344568888999999988888
Q ss_pred HHHHHH-----HHHccCCCeeeccccHHHHHhC
Q 029984 151 MMAATD-----LLNAGFAGITDIAGGFAAWRQN 178 (184)
Q Consensus 151 ~~~~~~-----L~~~G~~~v~~l~GG~~~W~~~ 178 (184)
..++.. |...||++|++|+|||.+|.++
T Consensus 81 ~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 81 GSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred chhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 777666 8889999999999999999863
No 30
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.85 E-value=8.6e-21 Score=158.43 Aligned_cols=100 Identities=34% Similarity=0.583 Sum_probs=87.6
Q ss_pred cccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCChhH
Q 029984 73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRS 150 (184)
Q Consensus 73 ~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~rs 150 (184)
..++++++.++++++.++||||+++||..||||||+|+|+. .+...... .+++++||+||++|.+|
T Consensus 3 ~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~~------------~l~~~~~~~~~~~~~~IvvyC~~G~rs 70 (376)
T PRK08762 3 REISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRG------------FLELRIETHLPDRDREIVLICASGTRS 70 (376)
T ss_pred ceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCHH------------HHHHHHhhhcCCCCCeEEEEcCCCcHH
Confidence 45788899998888889999999999999999999999983 34433333 26789999999999999
Q ss_pred HHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984 151 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 184 (184)
Q Consensus 151 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 184 (184)
..+++.|+..||++|++|+||+.+|.++|+|+++
T Consensus 71 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 104 (376)
T PRK08762 71 AHAAATLRELGYTRVASVAGGFSAWKDAGLPLER 104 (376)
T ss_pred HHHHHHHHHcCCCceEeecCcHHHHHhcCCcccc
Confidence 9999999999999999999999999999999863
No 31
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.85 E-value=1.3e-20 Score=157.92 Aligned_cols=135 Identities=25% Similarity=0.410 Sum_probs=105.1
Q ss_pred CCccccCCCccceeeecCCCccccccccccCcccccCCCCcccCHHHHHHHHhCC--CeEEEcCChhhHhcCCCCCcEEe
Q 029984 33 LLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINV 110 (184)
Q Consensus 33 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~liDvR~~~e~~~ghIpgAi~i 110 (184)
..+++++|.|..+..+. +|..+|...+.... .......++++++.++++++ .++||+|+++||..+|||||+|+
T Consensus 251 ~~~~~~~~~C~~~~~~~--~~~~~c~~~~~~~~--~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAini 326 (392)
T PRK07878 251 TIKIRKDPSTPKITELI--DYEAFCGVVSDEAQ--QAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLI 326 (392)
T ss_pred eEeeccCCCCCcccccc--cchhhccccccccc--ccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEc
Confidence 36788899987665555 57777753221111 12345678999999988754 68999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCC
Q 029984 111 PYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 181 (184)
Q Consensus 111 p~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p 181 (184)
|+..+. .......++++++||+||++|.+|..+++.|++.||++|++|+||+.+|.+++.+
T Consensus 327 p~~~l~----------~~~~~~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 327 PKSEIL----------SGEALAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred ChHHhc----------chhHHhhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 984211 0123456788999999999999999999999999999999999999999988654
No 32
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.84 E-value=7.9e-21 Score=128.47 Aligned_cols=80 Identities=26% Similarity=0.459 Sum_probs=66.9
Q ss_pred CCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHH-HHHhcCC-CCCeEEEEcCCChh--HHHHHHHHHHcc
Q 029984 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFR-KHDEIIVGCQSGKR--SMMAATDLLNAG 161 (184)
Q Consensus 86 ~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~-~~~~~l~-~~~~ivv~c~~g~r--s~~~~~~L~~~G 161 (184)
++++|||+|+++||..+|||||+|+|+. .+. .....++ ++++|||||.+|.+ |..+++.|++.|
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G 76 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWAANLPLS------------RLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELG 76 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccCeeCCHH------------HHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcC
Confidence 4588999999999999999999999983 222 2222343 58899999999876 689999999999
Q ss_pred CCCeeeccccHHHHHh
Q 029984 162 FAGITDIAGGFAAWRQ 177 (184)
Q Consensus 162 ~~~v~~l~GG~~~W~~ 177 (184)
|++|++|+||+.+|.+
T Consensus 77 ~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 77 YTDVALLEGGLQGWRA 92 (92)
T ss_pred ccCEEEccCCHHHHcC
Confidence 9999999999999963
No 33
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.7e-20 Score=129.10 Aligned_cols=87 Identities=40% Similarity=0.685 Sum_probs=75.7
Q ss_pred CCCeEEEcCChhhHhcCCCCC-cEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCChhHHHHHHHHHHccC
Q 029984 86 AGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGF 162 (184)
Q Consensus 86 ~~~~liDvR~~~e~~~ghIpg-Ai~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~rs~~~~~~L~~~G~ 162 (184)
++.++||||++.||..+|||| ++|+|.. .+...... +++++++||||.+|.||..++..|+++||
T Consensus 19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~------------~~~~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~~~G~ 86 (110)
T COG0607 19 EDAVLLDVREPEEYERGHIPGAAINIPLS------------ELKAAENLLELPDDDPIVVYCASGVRSAAAAAALKLAGF 86 (110)
T ss_pred CCCEEEeccChhHhhhcCCCcceeeeecc------------cchhhhcccccCCCCeEEEEeCCCCChHHHHHHHHHcCC
Confidence 458999999999999999999 9999984 22222222 57899999999999999999999999999
Q ss_pred CCeeeccccHHHHHhCCCCCCC
Q 029984 163 AGITDIAGGFAAWRQNGLPTEP 184 (184)
Q Consensus 163 ~~v~~l~GG~~~W~~~g~p~~~ 184 (184)
++++.+.||+.+|..+++|+++
T Consensus 87 ~~~~~l~gG~~~w~~~~~~~~~ 108 (110)
T COG0607 87 TNVYNLDGGIDAWKGAGLPLVR 108 (110)
T ss_pred ccccccCCcHHHHHhcCCCccc
Confidence 9888899999999999998763
No 34
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.83 E-value=6.3e-20 Score=132.98 Aligned_cols=102 Identities=20% Similarity=0.257 Sum_probs=82.6
Q ss_pred cCHHHHHHHHh-----CCCeEEEcCCh--------hhHhc------------CCCCCcEEeccccccC-C----CCCCCH
Q 029984 75 VPVRVAHELLQ-----AGHRYLDVRTP--------EEFSA------------GHATGAINVPYMYRVG-S----GMTKNL 124 (184)
Q Consensus 75 i~~~~~~~~~~-----~~~~liDvR~~--------~e~~~------------ghIpgAi~ip~~~~~~-~----~~~~~~ 124 (184)
++.+++.+.++ ++.+|||+|.. ++|.. ||||||+|+|+..+.. . ..+.+.
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 46678887776 34889999987 89988 9999999999864321 1 234455
Q ss_pred HHHHHHHhc--CCCCCeEEEEcCC---ChhHHHHHHHHHHccCCCeeeccccHHHHH
Q 029984 125 KFVEEVSTR--FRKHDEIIVGCQS---GKRSMMAATDLLNAGFAGITDIAGGFAAWR 176 (184)
Q Consensus 125 ~~~~~~~~~--l~~~~~ivv~c~~---g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~ 176 (184)
+.++..+.. ++++++||+||++ |..+.++++.|+.+|+++|++|+||+.+|+
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 677777654 6788999999986 778999999999999999999999999996
No 35
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.83 E-value=7.5e-20 Score=147.29 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=91.7
Q ss_pred cccCHHHHHHHHhCC-CeEEEcCC----------hhhHhcCCCCCcEEeccccccCC-----CCCCCHHHHHHHHhc--C
Q 029984 73 TSVPVRVAHELLQAG-HRYLDVRT----------PEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--F 134 (184)
Q Consensus 73 ~~i~~~~~~~~~~~~-~~liDvR~----------~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~~~~--l 134 (184)
..++++++.+.++++ ++|||+|+ +.+|..||||||+|+|+..+... ..+..++.++..+.. +
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 457888998888754 88999996 78999999999999997543221 234456777777766 4
Q ss_pred CCCCeEEEEcCCChh-HHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984 135 RKHDEIIVGCQSGKR-SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 184 (184)
Q Consensus 135 ~~~~~ivv~c~~g~r-s~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 184 (184)
+++++|||||.++.+ +.++++.|...||++|++|+||+.+|.++|+|+++
T Consensus 85 ~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~ 135 (281)
T PRK11493 85 NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEE 135 (281)
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccC
Confidence 789999999998764 66888999999999999999999999999999863
No 36
>PRK07411 hypothetical protein; Validated
Probab=99.82 E-value=8.9e-20 Score=152.76 Aligned_cols=140 Identities=26% Similarity=0.372 Sum_probs=102.8
Q ss_pred CCccccCCCccceeeecCCCccccccccccCccc-ccCCCCcccCHHHHHHHHhCC---CeEEEcCChhhHhcCCCCCcE
Q 029984 33 LLSLTVDQQRCDNIGFISSKILSFCPKASLRGNL-EAVGVPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAI 108 (184)
Q Consensus 33 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgAi 108 (184)
.+++.++|.|..+..+. +|..+|...+.+... ........++++++.++++++ .++||||++.||..||||||+
T Consensus 243 ~~~~~~~~~c~~i~~~~--~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi 320 (390)
T PRK07411 243 ELKLRPNPERPVIEKLI--DYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV 320 (390)
T ss_pred EEeccCCCCCCcccccc--chhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE
Confidence 56678889887765554 566666422211111 123445679999999888643 689999999999999999999
Q ss_pred EeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCC
Q 029984 109 NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 182 (184)
Q Consensus 109 ~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~ 182 (184)
|||+.++... ... .....++++++||+||.+|.||..+++.|++.||++ +.|.||+.+|.++..|.
T Consensus 321 niP~~~l~~~------~~~-~~l~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 321 LVPLPDIENG------PGV-EKVKELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDPS 386 (390)
T ss_pred EccHHHhhcc------cch-HHHhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence 9998532111 001 123345678999999999999999999999999985 57999999999987664
No 37
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.82 E-value=9.5e-20 Score=159.71 Aligned_cols=141 Identities=20% Similarity=0.324 Sum_probs=108.1
Q ss_pred ceeeecCCCccccccccc-cC-ccc-------c-cCCCCcccCHHHHHHHHhC-CCeEEEcCChhhHh--------cCCC
Q 029984 44 DNIGFISSKILSFCPKAS-LR-GNL-------E-AVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHA 104 (184)
Q Consensus 44 ~~~~~l~~~~~~~~~~~~-~~-~~~-------~-~~~~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~--------~ghI 104 (184)
..+.+++|++..|..... .. ... . .......++.+++.+.+++ +++|||+|+++||. .|||
T Consensus 108 ~~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHI 187 (610)
T PRK09629 108 SGYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHI 187 (610)
T ss_pred CCEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCC
Confidence 456789999999986321 11 100 0 0011224677888877764 47899999999995 6999
Q ss_pred CCcEEecccccc-CCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhC-CC
Q 029984 105 TGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN-GL 180 (184)
Q Consensus 105 pgAi~ip~~~~~-~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~-g~ 180 (184)
|||+|+|+.... ..+.+..++.++.++.. ++++++||+||++|.+|..+++.|+.+||+||++|+|||.+|... ++
T Consensus 188 PGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~l 267 (610)
T PRK09629 188 PGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDT 267 (610)
T ss_pred CCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCC
Confidence 999999985433 34556777888887764 578999999999999999999999999999999999999999885 68
Q ss_pred CCCC
Q 029984 181 PTEP 184 (184)
Q Consensus 181 p~~~ 184 (184)
|+++
T Consensus 268 Pv~~ 271 (610)
T PRK09629 268 PVEV 271 (610)
T ss_pred cccc
Confidence 8863
No 38
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.82 E-value=1.1e-19 Score=159.37 Aligned_cols=111 Identities=21% Similarity=0.220 Sum_probs=94.1
Q ss_pred cccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHHhcC--CCCCeEEEEc
Q 029984 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTRF--RKHDEIIVGC 144 (184)
Q Consensus 73 ~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~~~l--~~~~~ivv~c 144 (184)
..++++++.++++++ ++|||+|++.+|..||||||+|+|+.... ..+++.+.+.++..+..+ +++++|||||
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd 88 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD 88 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence 468899999998764 88999999999999999999999975321 134556667777776664 7899999999
Q ss_pred CCC-hhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984 145 QSG-KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183 (184)
Q Consensus 145 ~~g-~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~ 183 (184)
++| .++.++++.|+.+|+++|++|+||+.+|+.+|+|++
T Consensus 89 ~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~ 128 (610)
T PRK09629 89 DEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLS 128 (610)
T ss_pred CCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccc
Confidence 976 478899999999999999999999999999999975
No 39
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.82 E-value=6e-20 Score=122.31 Aligned_cols=80 Identities=43% Similarity=0.678 Sum_probs=69.7
Q ss_pred hCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHH--HhcCCCCCeEEEEcCCChhHHHHHHHHHHccC
Q 029984 85 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV--STRFRKHDEIIVGCQSGKRSMMAATDLLNAGF 162 (184)
Q Consensus 85 ~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~ 162 (184)
.++..|||+|++.||..+|||||+|+|+. .+... ...++++++|||||+.|.++..+++.|++.||
T Consensus 8 ~~~~~iiD~R~~~~~~~~~i~ga~~~~~~------------~~~~~~~~~~~~~~~~vv~~c~~~~~a~~~~~~l~~~G~ 75 (89)
T cd00158 8 DEDAVLLDVREPEEYAAGHIPGAINIPLS------------ELEERAALLELDKDKPIVVYCRSGNRSARAAKLLRKAGG 75 (89)
T ss_pred CCCeEEEECCCHHHHhccccCCCEecchH------------HHhhHHHhhccCCCCeEEEEeCCCchHHHHHHHHHHhCc
Confidence 34589999999999999999999999983 22222 44567899999999999999999999999999
Q ss_pred CCeeeccccHHHHH
Q 029984 163 AGITDIAGGFAAWR 176 (184)
Q Consensus 163 ~~v~~l~GG~~~W~ 176 (184)
+++++|.||+.+|+
T Consensus 76 ~~v~~l~gG~~~w~ 89 (89)
T cd00158 76 TNVYNLEGGMLAWK 89 (89)
T ss_pred ccEEEecCChhhcC
Confidence 99999999999994
No 40
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.82 E-value=9.7e-20 Score=125.12 Aligned_cols=80 Identities=31% Similarity=0.547 Sum_probs=67.8
Q ss_pred CCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCChhHHHHHHHHHHccCC
Q 029984 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFA 163 (184)
Q Consensus 86 ~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~ 163 (184)
....+||+|+++||..||||||+|||+. .+...... .+++++||+||++|.+|..++..|.+.||+
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~------------~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~ 84 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLK------------EIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYT 84 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHH------------HHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence 3467999999999999999999999983 34443333 256789999999999999999999999999
Q ss_pred CeeeccccHHHHHhC
Q 029984 164 GITDIAGGFAAWRQN 178 (184)
Q Consensus 164 ~v~~l~GG~~~W~~~ 178 (184)
+++++ ||+.+|..-
T Consensus 85 ~v~~~-GG~~~~~~~ 98 (101)
T TIGR02981 85 HAENA-GGIKDIAMP 98 (101)
T ss_pred eEEec-CCHHHhhhh
Confidence 99885 999999753
No 41
>PRK01415 hypothetical protein; Validated
Probab=99.82 E-value=3.2e-19 Score=140.00 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=83.5
Q ss_pred CCcccCHHHHHHHHhC-CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChh
Q 029984 71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 149 (184)
Q Consensus 71 ~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~r 149 (184)
..+.++++++.+++++ ++++||||++.||..||||||+|+|...+. ..+..+. ....++++++|++||.+|.|
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~-----e~~~~~~-~~~~~~k~k~Iv~yCtgGiR 183 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFK-----QFPAWVQ-QNQELLKGKKIAMVCTGGIR 183 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHh-----hhHHHHh-hhhhhcCCCeEEEECCCChH
Confidence 4567899999998875 488999999999999999999999973110 0011111 12345789999999999999
Q ss_pred HHHHHHHHHHccCCCeeeccccHHHHHhCC
Q 029984 150 SMMAATDLLNAGFAGITDIAGGFAAWRQNG 179 (184)
Q Consensus 150 s~~~~~~L~~~G~~~v~~l~GG~~~W~~~g 179 (184)
|..++..|.+.||++|+.|.||+.+|.+..
T Consensus 184 s~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 184 CEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred HHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 999999999999999999999999998753
No 42
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.81 E-value=1.6e-19 Score=124.66 Aligned_cols=78 Identities=31% Similarity=0.532 Sum_probs=66.6
Q ss_pred CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEcCCChhHHHHHHHHHHccCCC
Q 029984 87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAGFAG 164 (184)
Q Consensus 87 ~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~ 164 (184)
+-++||+|+++||..+|||||+|+|+. .+......+ +++++||+||++|.+|..++..|.+.||++
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~------------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~ 87 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLK------------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTH 87 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHH------------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence 357999999999999999999999983 344444443 456889999999999999999999999999
Q ss_pred eeeccccHHHHHh
Q 029984 165 ITDIAGGFAAWRQ 177 (184)
Q Consensus 165 v~~l~GG~~~W~~ 177 (184)
+++ .||+.+|..
T Consensus 88 v~~-~GG~~~~~~ 99 (104)
T PRK10287 88 AEN-AGGLKDIAM 99 (104)
T ss_pred EEe-cCCHHHHhh
Confidence 987 699999975
No 43
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.81 E-value=2.6e-19 Score=146.53 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=91.9
Q ss_pred CcccCHHHHHHHHhC-CCeEEEcC--------C-hhhHhcCCCCCcEEeccccccCC-----CCCCCHHHHHHHHhcC--
Q 029984 72 PTSVPVRVAHELLQA-GHRYLDVR--------T-PEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTRF-- 134 (184)
Q Consensus 72 ~~~i~~~~~~~~~~~-~~~liDvR--------~-~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~~~~l-- 134 (184)
...++++++.+++++ +.+|||+| + ..+|..||||||+|+++..+... .++..++.++..+..+
T Consensus 21 ~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi 100 (320)
T PLN02723 21 EPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGI 100 (320)
T ss_pred CceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCC
Confidence 357899999998875 48899996 3 37899999999999997544321 3455667777777764
Q ss_pred CCCCeEEEEcCCCh-hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984 135 RKHDEIIVGCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 184 (184)
Q Consensus 135 ~~~~~ivv~c~~g~-rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 184 (184)
.++++|||||+.|. .+.++++.|+.+||++|++|+||+.+|.++|+|+++
T Consensus 101 ~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~ 151 (320)
T PLN02723 101 ENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVES 151 (320)
T ss_pred CCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCccc
Confidence 57889999998776 467888999999999999999999999999999863
No 44
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.80 E-value=2.9e-19 Score=141.77 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=81.4
Q ss_pred CCcccCHHHHHHHHhC-------CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEE
Q 029984 71 VPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVG 143 (184)
Q Consensus 71 ~~~~i~~~~~~~~~~~-------~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~ 143 (184)
....++++++.+++++ +.++||||++.||+.||||||+|+|+..+. ..+..+......+ ++++|++|
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~-----~~~~~l~~~~~~~-kdk~Ivvy 181 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFT-----EFPEALAAHRADL-AGKTVVSF 181 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhh-----hhHHHHHhhhhhc-CCCeEEEE
Confidence 4567888898888765 268999999999999999999999984210 0011122222223 78999999
Q ss_pred cCCChhHHHHHHHHHHccCCCeeeccccHHHHHhC
Q 029984 144 CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN 178 (184)
Q Consensus 144 c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 178 (184)
|.+|.||..++..|++.||++|+.|.||+.+|.++
T Consensus 182 C~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 182 CTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred CCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 99999999999999999999999999999999874
No 45
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.80 E-value=2.5e-19 Score=125.49 Aligned_cols=96 Identities=22% Similarity=0.410 Sum_probs=73.8
Q ss_pred ccCHHHHHHHHhCC---CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEcC-CC
Q 029984 74 SVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQ-SG 147 (184)
Q Consensus 74 ~i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~-~g 147 (184)
.++++++.+++..+ .++||||++ ||..||||||+|+|+..+. ..+....... +++++|||||. +|
T Consensus 3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~--------~~~~~~~~~~~~~~~~~iv~yC~~~~ 73 (113)
T cd01531 3 YISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFK--------AQLNQLVQLLSGSKKDTVVFHCALSQ 73 (113)
T ss_pred cCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHh--------hCHHHHHHHHhcCCCCeEEEEeecCC
Confidence 47788888887653 679999999 9999999999999984211 1122222222 56789999998 67
Q ss_pred hhHHHHHHHHHH--------ccCCCeeeccccHHHHHhC
Q 029984 148 KRSMMAATDLLN--------AGFAGITDIAGGFAAWRQN 178 (184)
Q Consensus 148 ~rs~~~~~~L~~--------~G~~~v~~l~GG~~~W~~~ 178 (184)
.|+..++..|.+ .|+.||++|+||+.+|++.
T Consensus 74 ~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 74 VRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred cchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 788888877654 4999999999999999864
No 46
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.77 E-value=2e-18 Score=140.67 Aligned_cols=102 Identities=24% Similarity=0.338 Sum_probs=81.6
Q ss_pred CCcccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChh
Q 029984 71 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 149 (184)
Q Consensus 71 ~~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~r 149 (184)
....++++++.+++.++ ++|||||++.||..||||||+|+|+..+.. .++.+.... ...++++||+||.+|.|
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~-----~~~~l~~~~-~~~kdk~IvvyC~~G~R 183 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFRE-----FPPWVEENL-DPLKDKKVVMYCTGGIR 183 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhh-----hHHHHHHhc-CCCCcCeEEEECCCCcH
Confidence 34568889998887654 889999999999999999999999842210 011121211 23578999999999999
Q ss_pred HHHHHHHHHHccCCCeeeccccHHHHHhC
Q 029984 150 SMMAATDLLNAGFAGITDIAGGFAAWRQN 178 (184)
Q Consensus 150 s~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 178 (184)
+..++..|.+.||++|+.|+||+.+|.+.
T Consensus 184 s~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 184 CEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred HHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 99999999999999999999999999774
No 47
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.77 E-value=1e-18 Score=122.38 Aligned_cols=94 Identities=24% Similarity=0.333 Sum_probs=69.7
Q ss_pred ccCHHHHHHHHhCC-------CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEc
Q 029984 74 SVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGC 144 (184)
Q Consensus 74 ~i~~~~~~~~~~~~-------~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c 144 (184)
.+++++++++++++ .+|||||++ ||..||||||+|+|+..+ .+.+......+ .+.++||+||
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~--------~~~~~~~~~~~~~~~~~~iv~~C 73 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSC--------YQTLPQVYALFSLAGVKLAIFYC 73 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHH--------HHHHHHHHHHhhhcCCCEEEEEC
Confidence 47788999988764 689999999 999999999999998421 11122222222 3467899999
Q ss_pred CC-ChhHHHHHHHHH----HccC--CCeeeccccHHHHH
Q 029984 145 QS-GKRSMMAATDLL----NAGF--AGITDIAGGFAAWR 176 (184)
Q Consensus 145 ~~-g~rs~~~~~~L~----~~G~--~~v~~l~GG~~~W~ 176 (184)
.+ |.||..++..|. +.|| .++++|+||+.+|.
T Consensus 74 ~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 74 GSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred CCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 96 678877775544 4575 68999999999995
No 48
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.76 E-value=2.9e-18 Score=141.07 Aligned_cols=104 Identities=28% Similarity=0.422 Sum_probs=78.2
Q ss_pred HHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCC----------C---------CCCC---HHHHHHHHhcC
Q 029984 77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----------G---------MTKN---LKFVEEVSTRF 134 (184)
Q Consensus 77 ~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~----------~---------~~~~---~~~~~~~~~~l 134 (184)
..++.++..++.+|||||++.||..||||||+|+|+...... + .+.. .+.+...+..+
T Consensus 5 ~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~~~~ 84 (345)
T PRK11784 5 AQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAWADF 84 (345)
T ss_pred HHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHHHhc
Confidence 456777777889999999999999999999999999532210 0 0111 11222222333
Q ss_pred C-CCCeEEEEcC-CChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCC
Q 029984 135 R-KHDEIIVGCQ-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 181 (184)
Q Consensus 135 ~-~~~~ivv~c~-~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p 181 (184)
+ ++++||+||. +|.||..+++.|...|| +++.|+||+.+|+..+.+
T Consensus 85 ~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~ 132 (345)
T PRK11784 85 PRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVID 132 (345)
T ss_pred ccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHH
Confidence 3 7889999995 78999999999999999 589999999999987653
No 49
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.74 E-value=4.9e-18 Score=137.97 Aligned_cols=95 Identities=29% Similarity=0.430 Sum_probs=71.3
Q ss_pred CCeEEEcCChhhHhcCCCCCcEEeccccccCC---CCC-------------------CCHHHHHHHHhcCCCCCeEEEEc
Q 029984 87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS---GMT-------------------KNLKFVEEVSTRFRKHDEIIVGC 144 (184)
Q Consensus 87 ~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~---~~~-------------------~~~~~~~~~~~~l~~~~~ivv~c 144 (184)
+..|||||++.||..||||||+|||+...... |.. .-++.+.......++++.||+||
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC 81 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC 81 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 35799999999999999999999998432111 000 01122333334445566699999
Q ss_pred C-CChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCC
Q 029984 145 Q-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 182 (184)
Q Consensus 145 ~-~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~ 182 (184)
. +|.||..+++.|...|| ++++|+||+.+|+..+.+.
T Consensus 82 ~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~ 119 (311)
T TIGR03167 82 WRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQ 119 (311)
T ss_pred CCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhh
Confidence 5 78999999999999999 6999999999999887543
No 50
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.74 E-value=1.3e-17 Score=138.30 Aligned_cols=95 Identities=33% Similarity=0.530 Sum_probs=78.2
Q ss_pred CCcccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHH-HhcCCCCCeEEEEcCCChh
Q 029984 71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV-STRFRKHDEIIVGCQSGKR 149 (184)
Q Consensus 71 ~~~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ivv~c~~g~r 149 (184)
....++.+++.++ ..+.+|||+|+++||..+|||||+|+|+.. ..... ...++++++||+||++|.+
T Consensus 259 ~~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgAinip~~~-----------l~~~~~~~~~~~~~~IvvyC~~G~r 326 (355)
T PRK05597 259 FGEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGAHNVPLSA-----------IREGANPPSVSAGDEVVVYCAAGVR 326 (355)
T ss_pred cccccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCCEEeCHHH-----------hhhccccccCCCCCeEEEEcCCCHH
Confidence 3456778888744 456889999999999999999999999842 11111 1235778899999999999
Q ss_pred HHHHHHHHHHccCCCeeeccccHHHHHh
Q 029984 150 SMMAATDLLNAGFAGITDIAGGFAAWRQ 177 (184)
Q Consensus 150 s~~~~~~L~~~G~~~v~~l~GG~~~W~~ 177 (184)
|..+++.|++.||++|++|+||+.+|.+
T Consensus 327 S~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 327 SAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred HHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 9999999999999999999999999975
No 51
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.72 E-value=6.3e-17 Score=129.29 Aligned_cols=114 Identities=23% Similarity=0.265 Sum_probs=94.1
Q ss_pred CCcccCHHHHHHHHhC------CCeEEEcCCh--hhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHHhc--CC
Q 029984 71 VPTSVPVRVAHELLQA------GHRYLDVRTP--EEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FR 135 (184)
Q Consensus 71 ~~~~i~~~~~~~~~~~------~~~liDvR~~--~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~~~--l~ 135 (184)
....++++.+.+.+.+ +..+++++.. .+|..+|||||+++++.... ..+++.+++.+...+.. +.
T Consensus 9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~ 88 (285)
T COG2897 9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIR 88 (285)
T ss_pred cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 4556888888887753 4556666555 89999999999999986543 24678888888888776 57
Q ss_pred CCCeEEEEcCC-ChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984 136 KHDEIIVGCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 184 (184)
Q Consensus 136 ~~~~ivv~c~~-g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 184 (184)
.+.+||+|.+. +..|.+++|.|+-+|++||++|+||+++|+++|+|+++
T Consensus 89 ~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~ 138 (285)
T COG2897 89 NDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLET 138 (285)
T ss_pred CCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccC
Confidence 89999999975 44789999999999999999999999999999999873
No 52
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.70 E-value=9.5e-17 Score=115.36 Aligned_cols=102 Identities=20% Similarity=0.177 Sum_probs=74.0
Q ss_pred cCHHHHHHHHhC---CCeEEEcCChhhHhcCCCCCcEEeccccccCCC----------CCCCHHHHHHHHhcCCCCCeEE
Q 029984 75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG----------MTKNLKFVEEVSTRFRKHDEII 141 (184)
Q Consensus 75 i~~~~~~~~~~~---~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~iv 141 (184)
++++++.+++++ +.+|||+|++.+|..+|||||+|+|+....... ++..++.... +... ++++||
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~-~~~~VV 79 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDR-LRRG-ESLAVV 79 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHH-HhcC-CCCeEE
Confidence 678888888864 478999999999999999999999986422110 1122222222 2222 578999
Q ss_pred EEcCCChh---------HHHHHHHHHH--ccCCCeeeccccHHHHHhC
Q 029984 142 VGCQSGKR---------SMMAATDLLN--AGFAGITDIAGGFAAWRQN 178 (184)
Q Consensus 142 v~c~~g~r---------s~~~~~~L~~--~G~~~v~~l~GG~~~W~~~ 178 (184)
|||.++.+ +..++..|.. .++.+|++|+||+.+|.+.
T Consensus 80 vYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 80 VYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred EEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 99997764 6666777777 4677899999999999763
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.70 E-value=4.3e-17 Score=135.60 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=72.8
Q ss_pred ccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCC---CcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChh
Q 029984 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 149 (184)
Q Consensus 74 ~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIp---gAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~r 149 (184)
.++++++.++++++ .++||||+++||+.+||| ||+|||+..+... .+.. .....++++ +|||||.+|.|
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~-----~~~~-~~l~~~~~~-~Ivv~C~sG~R 344 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDD-----ADIL-HALSPIDGD-NVVVYCASGIR 344 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcc-----hhhh-hhccccCCC-cEEEECCCChh
Confidence 68889998888765 689999999999999998 5999998422100 0001 122334555 89999999999
Q ss_pred HHHHHHHHHHccCCC-eeeccccHH
Q 029984 150 SMMAATDLLNAGFAG-ITDIAGGFA 173 (184)
Q Consensus 150 s~~~~~~L~~~G~~~-v~~l~GG~~ 173 (184)
|..++..|++.||++ |++|.||+.
T Consensus 345 S~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 345 SADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred HHHHHHHHHHcCCCCceEEeccccC
Confidence 999999999999986 899999975
No 54
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.58 E-value=4.8e-15 Score=119.25 Aligned_cols=152 Identities=20% Similarity=0.283 Sum_probs=111.8
Q ss_pred ccCCCCCCCcCCCccccCCCcc------ceeeecCCCccccccccccCc-ccccCCCCcccCHHHHHHHHhCC--CeEEE
Q 029984 22 VLCPHGNNRRGLLSLTVDQQRC------DNIGFISSKILSFCPKASLRG-NLEAVGVPTSVPVRVAHELLQAG--HRYLD 92 (184)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~p~~~------~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~--~~liD 92 (184)
+|+..++.+|+...+.+.+.|. .+...+ +|..+|....... +.........++..+++++++++ .++||
T Consensus 261 lfdg~~~~~r~irlR~r~~~C~~Cg~n~tit~~~--dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llD 338 (427)
T KOG2017|consen 261 LFDGLSGHFRTIRLRSRRPKCAVCGKNPTITSLI--DYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLD 338 (427)
T ss_pred EEecccceeEEEEeccCCCCCcccCCCCccCccc--chhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEe
Confidence 6677778888888888888876 444444 7888886333322 33344567789999999999874 88999
Q ss_pred cCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC-CCCCeEEEEcCCChhHHHHHHHHHHccCC-Ceeeccc
Q 029984 93 VRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEIIVGCQSGKRSMMAATDLLNAGFA-GITDIAG 170 (184)
Q Consensus 93 vR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ivv~c~~g~rs~~~~~~L~~~G~~-~v~~l~G 170 (184)
||++.||+..|+|+|+|||+.+..... . ++....+ ...++|+|+|..|+.|..+++.|++...+ +|+.+-|
T Consensus 339 vRp~~~~eI~~lP~avNIPL~~l~~~~------~-~~~~~~~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvig 411 (427)
T KOG2017|consen 339 VRPSHEYEICRLPEAVNIPLKELRSRS------G-KKLQGDLNTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVIG 411 (427)
T ss_pred ccCcceEEEEecccccccchhhhhhhh------h-hhhcccccccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhhh
Confidence 999999999999999999984221110 0 1222223 34677999999999999999999987653 5667889
Q ss_pred cHHHHHhCCCCC
Q 029984 171 GFAAWRQNGLPT 182 (184)
Q Consensus 171 G~~~W~~~g~p~ 182 (184)
|+.+|..+-.|.
T Consensus 412 Gl~~w~~~vd~~ 423 (427)
T KOG2017|consen 412 GLKAWAAKVDPN 423 (427)
T ss_pred HHHHHHHhcCcC
Confidence 999998875443
No 55
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.52 E-value=5.9e-14 Score=120.74 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=65.9
Q ss_pred HHhCCCeEEEcCChhhHhcCCCCC----cEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHH
Q 029984 83 LLQAGHRYLDVRTPEEFSAGHATG----AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL 158 (184)
Q Consensus 83 ~~~~~~~liDvR~~~e~~~ghIpg----Ai~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~ 158 (184)
.+.++.++||||+++||..+|||| |+|+|+ ..+......+++++++|+||.+|.||..++..|.
T Consensus 403 ~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~------------~~l~~~~~~l~~~~~iivyC~~G~rS~~aa~~L~ 470 (482)
T PRK01269 403 ELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPF------------YKLSTQFGDLDQSKTYLLYCDRGVMSRLQALYLR 470 (482)
T ss_pred hcCCCCEEEECCCHHHHhcCCCCCCCceEEECCH------------HHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHHH
Confidence 335668999999999999999999 999998 3455555667889999999999999999999999
Q ss_pred HccCCCeeecc
Q 029984 159 NAGFAGITDIA 169 (184)
Q Consensus 159 ~~G~~~v~~l~ 169 (184)
+.||+||++|.
T Consensus 471 ~~G~~nv~~y~ 481 (482)
T PRK01269 471 EQGFSNVKVYR 481 (482)
T ss_pred HcCCccEEecC
Confidence 99999999875
No 56
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.36 E-value=7.8e-13 Score=104.84 Aligned_cols=101 Identities=23% Similarity=0.315 Sum_probs=82.3
Q ss_pred CcccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhH
Q 029984 72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150 (184)
Q Consensus 72 ~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs 150 (184)
.+-++++++.+++.++ .++||.|...||+.||..||++.+...+ -.-+..++...+.+ ++++|+.||.+|.|.
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tF-----refP~~v~~~~~~~-~~KkVvmyCTGGIRC 185 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETF-----REFPAWVEENLDLL-KDKKVVMYCTGGIRC 185 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhh-----hhhHHHHHHHHHhc-cCCcEEEEcCCceee
Confidence 4568889999988754 8899999999999999999999987311 12234444444443 466999999999999
Q ss_pred HHHHHHHHHccCCCeeeccccHHHHHhC
Q 029984 151 MMAATDLLNAGFAGITDIAGGFAAWRQN 178 (184)
Q Consensus 151 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 178 (184)
.++..+|...||++||-|+||+-.+-++
T Consensus 186 EKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 186 EKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred hhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 9999999999999999999999888654
No 57
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.33 E-value=9.3e-12 Score=98.26 Aligned_cols=134 Identities=19% Similarity=0.358 Sum_probs=95.2
Q ss_pred ceeeecCCCccccccccccCccccc-CC-----CCcccCHHHHHHHH--------hCCCeEEEcCChhhHh---------
Q 029984 44 DNIGFISSKILSFCPKASLRGNLEA-VG-----VPTSVPVRVAHELL--------QAGHRYLDVRTPEEFS--------- 100 (184)
Q Consensus 44 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~-----~~~~i~~~~~~~~~--------~~~~~liDvR~~~e~~--------- 100 (184)
..+-++++++..|+........... .+ ....+....+..+. .+++..||.|...+|.
T Consensus 115 ~~VslL~GG~~~Wk~~g~~~~s~~~~~p~~~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~ 194 (286)
T KOG1529|consen 115 TKVSLLNGGFRAWKAAGGPVDSSKVETPYSPIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSG 194 (286)
T ss_pred cEEEEecCcHHHHHHcCCccccccccCCCCCccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCccc
Confidence 6678899999999873221111111 01 11222222222221 2348899999999986
Q ss_pred --cCCCCCcEEeccccccCC-CCCCCHHHHHHHHhc--CCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHH
Q 029984 101 --AGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 175 (184)
Q Consensus 101 --~ghIpgAi~ip~~~~~~~-~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W 175 (184)
.||||||+|+|+...... +....++.+...+.. +..++|+++-|+.|..+...+-.|...| .++.+|+|+|.+|
T Consensus 195 ~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew 273 (286)
T KOG1529|consen 195 ATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEW 273 (286)
T ss_pred CcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHH
Confidence 689999999999776654 444446677766554 5668999999999999999999999999 6799999999999
Q ss_pred HhC
Q 029984 176 RQN 178 (184)
Q Consensus 176 ~~~ 178 (184)
...
T Consensus 274 ~~~ 276 (286)
T KOG1529|consen 274 ALR 276 (286)
T ss_pred hhc
Confidence 863
No 58
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=5.2e-12 Score=101.58 Aligned_cols=97 Identities=24% Similarity=0.351 Sum_probs=74.6
Q ss_pred CCcccCHHHHHHHHhCC-------CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC------CCC
Q 029984 71 VPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF------RKH 137 (184)
Q Consensus 71 ~~~~i~~~~~~~~~~~~-------~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l------~~~ 137 (184)
....|+++.++.++++. ++|||+|-+.||..|||+||+||+.. +.+...+-.. .+.
T Consensus 154 ~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~-----------~~~~~~f~~~~~~~~~~~~ 222 (325)
T KOG3772|consen 154 DLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSK-----------ELLQDFFLLKDGVPSGSKR 222 (325)
T ss_pred cccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccH-----------hhhhhhhccccccccccCc
Confidence 34569999999998752 56899999999999999999999974 3444333221 123
Q ss_pred CeEEEEcC-CChhHHHHHHHHHH------------ccCCCeeeccccHHHHHhC
Q 029984 138 DEIIVGCQ-SGKRSMMAATDLLN------------AGFAGITDIAGGFAAWRQN 178 (184)
Q Consensus 138 ~~ivv~c~-~g~rs~~~~~~L~~------------~G~~~v~~l~GG~~~W~~~ 178 (184)
..+||||. +..|...+|..|+. .-|..+|+|+||+.+|-..
T Consensus 223 ~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 223 VILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred eeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 46799997 77899999999984 3455699999999999553
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.28 E-value=3.5e-11 Score=95.05 Aligned_cols=111 Identities=23% Similarity=0.307 Sum_probs=85.9
Q ss_pred ccCHHHHHHHHhC-CCeEEEcC---------ChhhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHHhc--CCC
Q 029984 74 SVPVRVAHELLQA-GHRYLDVR---------TPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FRK 136 (184)
Q Consensus 74 ~i~~~~~~~~~~~-~~~liDvR---------~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~~~--l~~ 136 (184)
.++++-+.+.+.+ +..|||.. ...||..-|||||.++.++... ...++..++.+++.... +++
T Consensus 6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~n 85 (286)
T KOG1529|consen 6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVDN 85 (286)
T ss_pred ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCCC
Confidence 4556666666554 58899984 3457888999999999986443 22455565665665554 577
Q ss_pred CCeEEEEcC--CCh-hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984 137 HDEIIVGCQ--SGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 184 (184)
Q Consensus 137 ~~~ivv~c~--~g~-rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 184 (184)
+..+|||.+ .|+ .|.+++|+++..|+++|.+|+||+..|+..|+|+++
T Consensus 86 ~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s 136 (286)
T KOG1529|consen 86 GDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDS 136 (286)
T ss_pred CCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccc
Confidence 889999998 676 478999999999999999999999999999999863
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.59 E-value=1.5e-07 Score=75.65 Aligned_cols=95 Identities=20% Similarity=0.335 Sum_probs=73.8
Q ss_pred CcccCHHHHHHHHhCC-------CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEE
Q 029984 72 PTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIV 142 (184)
Q Consensus 72 ~~~i~~~~~~~~~~~~-------~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv 142 (184)
-.+|+++.++.+++.. -.|||.|=+.||..|||-.|+||.-. +.+...+.. +.-..-+|+
T Consensus 241 ~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~-----------~~l~~~F~hkplThp~aLif 309 (427)
T COG5105 241 IQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISST-----------KKLGLLFRHKPLTHPRALIF 309 (427)
T ss_pred hhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchH-----------HHHHHHHHhccccCceeEEE
Confidence 3568999999988753 45999999999999999999999863 555554442 222456899
Q ss_pred EcC-CChhHHHHHHHHHHc------------cCCCeeeccccHHHHHh
Q 029984 143 GCQ-SGKRSMMAATDLLNA------------GFAGITDIAGGFAAWRQ 177 (184)
Q Consensus 143 ~c~-~g~rs~~~~~~L~~~------------G~~~v~~l~GG~~~W~~ 177 (184)
+|. +..|+...|..|+.. -|..|++|+||++.+-.
T Consensus 310 HCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 310 HCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred EeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 998 778999999999863 35679999999987643
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.68 E-value=4.3e-05 Score=61.04 Aligned_cols=99 Identities=29% Similarity=0.357 Sum_probs=64.5
Q ss_pred HHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCC---------CCCCCH-------------HHHHHHHhcC
Q 029984 77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS---------GMTKNL-------------KFVEEVSTRF 134 (184)
Q Consensus 77 ~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~---------~~~~~~-------------~~~~~~~~~l 134 (184)
.+....++..+..+||||.|-||..|+.|+++|+|.....+. ...... .++-......
T Consensus 5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f 84 (334)
T COG2603 5 EQDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF 84 (334)
T ss_pred HHHHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 355666777778899999999999999999999998432211 000000 0000111112
Q ss_pred CCCCeEEEEcC-CChhHHHHHHHH-HHccCCCeeeccccHHHHH
Q 029984 135 RKHDEIIVGCQ-SGKRSMMAATDL-LNAGFAGITDIAGGFAAWR 176 (184)
Q Consensus 135 ~~~~~ivv~c~-~g~rs~~~~~~L-~~~G~~~v~~l~GG~~~W~ 176 (184)
..+.++-++|. +|.|+...+.+| ...|++ .--+.||..+.+
T Consensus 85 ~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 85 QEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred HHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 23556666687 566999999999 677875 444679988764
No 62
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=97.34 E-value=0.0019 Score=46.48 Aligned_cols=86 Identities=20% Similarity=0.194 Sum_probs=51.3
Q ss_pred cccCHHHHHHHHhCC-CeEEEcCChhhHhcCC----------CCCc--EEeccccccCCCCCCCHHHHHHHHhcC-CCCC
Q 029984 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGH----------ATGA--INVPYMYRVGSGMTKNLKFVEEVSTRF-RKHD 138 (184)
Q Consensus 73 ~~i~~~~~~~~~~~~-~~liDvR~~~e~~~gh----------IpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 138 (184)
..++.++++.+.+.+ -.|||.|+..|..... -+|- +++|... .. .+++.+......+ ..++
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~----~~-~~~~~v~~f~~~~~~~~~ 87 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA----GD-ITPDDVETFRAAIGAAEG 87 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCC----CC-CCHHHHHHHHHHHHhCCC
Confidence 456778888877777 5799999887643211 1232 5666531 11 1333444433333 2368
Q ss_pred eEEEEcCCChhHHHHHHHHH-HccCC
Q 029984 139 EIIVGCQSGKRSMMAATDLL-NAGFA 163 (184)
Q Consensus 139 ~ivv~c~~g~rs~~~~~~L~-~~G~~ 163 (184)
||++||.+|.|+..++..+. ..|..
T Consensus 88 pvL~HC~sG~Rt~~l~al~~~~~g~~ 113 (135)
T TIGR01244 88 PVLAYCRSGTRSSLLWGFRQAAEGVP 113 (135)
T ss_pred CEEEEcCCChHHHHHHHHHHHHcCCC
Confidence 99999999999877664433 34653
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=97.32 E-value=0.0022 Score=44.56 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=40.2
Q ss_pred cccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCC--------------CcEEeccccccCCCCCCCHHHHHHHHhcCC-C
Q 029984 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT--------------GAINVPYMYRVGSGMTKNLKFVEEVSTRFR-K 136 (184)
Q Consensus 73 ~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIp--------------gAi~ip~~~~~~~~~~~~~~~~~~~~~~l~-~ 136 (184)
..+++++++++.+.| -.||+.|+..|-. +-| .-+|+|.. +....++.+....+.+. .
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~-----~~~~~~~~v~~f~~~l~~~ 85 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVD-----GGAITEEDVEAFADALESL 85 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE---------TTT--HHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecC-----CCCCCHHHHHHHHHHHHhC
Confidence 357889999999998 5699999875521 111 13677763 11123344444433332 3
Q ss_pred CCeEEEEcCCChhHHHHHH
Q 029984 137 HDEIIVGCQSGKRSMMAAT 155 (184)
Q Consensus 137 ~~~ivv~c~~g~rs~~~~~ 155 (184)
.+||++||.+|.|+...|.
T Consensus 86 ~~Pvl~hC~sG~Ra~~l~~ 104 (110)
T PF04273_consen 86 PKPVLAHCRSGTRASALWA 104 (110)
T ss_dssp TTSEEEE-SCSHHHHHHHH
T ss_pred CCCEEEECCCChhHHHHHH
Confidence 5699999999999955543
No 64
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=96.19 E-value=0.0027 Score=55.30 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=63.4
Q ss_pred CcccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC-----CCCCeEEEEcCC
Q 029984 72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-----RKHDEIIVGCQS 146 (184)
Q Consensus 72 ~~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~ivv~c~~ 146 (184)
.+.++++++..+ ....++|.|...||..+|+++++|+|.. ..+..+++. ..+ ...+.++++...
T Consensus 621 ~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~--------~~ea~l~~~-~~l~~~~~~~~~~~v~~~~~ 689 (725)
T KOG1093|consen 621 CPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFN--------NHEADLDWL-RFLPGIVCSEGKKCVVVGKN 689 (725)
T ss_pred CccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCcc--------chHHHHHHh-hcchHhHHhhCCeEEEeccc
Confidence 445677766655 4477899999999999999999999984 111222221 111 245566766665
Q ss_pred ChhHHHHHHHHHHccCCCeeeccccHHHHH
Q 029984 147 GKRSMMAATDLLNAGFAGITDIAGGFAAWR 176 (184)
Q Consensus 147 g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~ 176 (184)
...+......+..+-+.++.++.+|++...
T Consensus 690 ~K~~~e~~~~~~~mk~p~~cil~~~~~~~~ 719 (725)
T KOG1093|consen 690 DKHAAERLTELYVMKVPRICILHDGFNNID 719 (725)
T ss_pred hHHHHHHhhHHHHhcccHHHHHHHHHhhcC
Confidence 556666666666666777888999988543
No 65
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=95.68 E-value=0.0015 Score=53.57 Aligned_cols=38 Identities=8% Similarity=-0.038 Sum_probs=33.2
Q ss_pred cCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEecc
Q 029984 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112 (184)
Q Consensus 75 i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~ 112 (184)
-+++++.+.+.....++|+|....|..+||+|++|+|.
T Consensus 16 ~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~ 53 (314)
T PRK00142 16 EDPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTI 53 (314)
T ss_pred CCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecH
Confidence 45677877777777789999999999999999999997
No 66
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=95.25 E-value=0.2 Score=36.89 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=42.9
Q ss_pred CCcccCHHHHHHHHhCC-CeEEEcCChhhHhcC---CCCCc--EEeccccccCC------------------------CC
Q 029984 71 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAG---HATGA--INVPYMYRVGS------------------------GM 120 (184)
Q Consensus 71 ~~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~g---hIpgA--i~ip~~~~~~~------------------------~~ 120 (184)
....++.++...+..-+ -.|||.|++.|.... .++|. +|+|....... .+
T Consensus 26 ~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 105 (164)
T PF13350_consen 26 NLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREM 105 (164)
T ss_dssp --TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHG
T ss_pred CcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHH
Confidence 34557778887777556 579999999998752 34455 45554211111 00
Q ss_pred C-CCHHHHHHHHhcC-CCCCeEEEEcCCCh-hHH-HHHHHHHHccCCC
Q 029984 121 T-KNLKFVEEVSTRF-RKHDEIIVGCQSGK-RSM-MAATDLLNAGFAG 164 (184)
Q Consensus 121 ~-~~~~~~~~~~~~l-~~~~~ivv~c~~g~-rs~-~~~~~L~~~G~~~ 164 (184)
. .....+...+..+ +...+++++|..|. |.. .++-.|..+|++.
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~~ 153 (164)
T PF13350_consen 106 LESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVPD 153 (164)
T ss_dssp GGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred HHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence 0 1123333333332 23369999999887 444 4556666778753
No 67
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=93.87 E-value=0.2 Score=35.42 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=42.4
Q ss_pred HHHHHhCC-CeEEEcCChhhHhcCCCCC--cEEeccccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCCh-hHHHH-
Q 029984 80 AHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSGK-RSMMA- 153 (184)
Q Consensus 80 ~~~~~~~~-~~liDvR~~~e~~~ghIpg--Ai~ip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g~-rs~~~- 153 (184)
.+.+.+.+ ..|||+++..++...+.+| -.++|+.+......... +..++........+++|+|+|..|. ||..+
T Consensus 20 ~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~ 99 (139)
T cd00127 20 KELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLV 99 (139)
T ss_pred HHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHH
Confidence 33444455 5799999988752222222 35666532221111000 1112222222345679999999886 77644
Q ss_pred -HHHHHHccC
Q 029984 154 -ATDLLNAGF 162 (184)
Q Consensus 154 -~~~L~~~G~ 162 (184)
+..+...|+
T Consensus 100 ~~~l~~~~~~ 109 (139)
T cd00127 100 IAYLMKTLGL 109 (139)
T ss_pred HHHHHHHcCC
Confidence 344444554
No 68
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=93.74 E-value=0.23 Score=40.79 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=56.3
Q ss_pred eeecCCCccccccccccC--c---c--cccCCCCcccCHHHHHHHHhC-CCeEEEcCChhhHhc---CCCC-CcEEeccc
Q 029984 46 IGFISSKILSFCPKASLR--G---N--LEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSA---GHAT-GAINVPYM 113 (184)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~--~---~--~~~~~~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~~---ghIp-gAi~ip~~ 113 (184)
+..+.|+|..|....... . . .......+.+...++.+.+.+ +..|||+|+..+|.. |||+ +.. |-.
T Consensus 102 v~~L~GG~~aw~~~~~~~~~~~~~~~~~~vl~g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~q--psq 179 (311)
T TIGR03167 102 VPRLEGGYKAYRRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGPQ--PSQ 179 (311)
T ss_pred EEEecChHHHHHHhhhhhhhccCCCCceeccCCCCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCCC--Cch
Confidence 457889999997633111 1 1 111222455666677666654 488999999999998 8888 421 110
Q ss_pred cccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCCh
Q 029984 114 YRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148 (184)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~ 148 (184)
. .....+...+..++++++|++-|.+..
T Consensus 180 -----~--~fe~~L~~~l~~~~~~~~i~~e~es~~ 207 (311)
T TIGR03167 180 -----K--RFENALAEALRRLDPGRPIFVEDESRR 207 (311)
T ss_pred -----H--HHHHHHHHHHHhCCCCceEEEEeCchh
Confidence 0 002333344444677788888887654
No 69
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=93.37 E-value=0.28 Score=34.79 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=42.5
Q ss_pred HHHHHhCC-CeEEEcCChhhHhc-CCCCCcEEeccccccCCCCCCCHHHHHH----HHhcCCCCCeEEEEcCCCh-hHHH
Q 029984 80 AHELLQAG-HRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEE----VSTRFRKHDEIIVGCQSGK-RSMM 152 (184)
Q Consensus 80 ~~~~~~~~-~~liDvR~~~e~~~-ghIpgAi~ip~~~~~~~~~~~~~~~~~~----~~~~l~~~~~ivv~c~~g~-rs~~ 152 (184)
++.+.+.+ ..||++++..+... ..+ .-+++|..+.... ...+.+.. +......+++|+|+|..|. ||..
T Consensus 19 ~~~l~~~gi~~Vi~l~~~~~~~~~~~~-~~~~ipi~D~~~~---~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 94 (138)
T smart00195 19 LALLKKLGITHVINVTNEVPNLNKKGF-TYLGVPILDNTET---KISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSAT 94 (138)
T ss_pred HHHHHHcCCCEEEEccCCCCCCCCCCC-EEEEEECCCCCCC---ChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHH
Confidence 34444556 57899987654321 111 2356776421111 11122222 2222456789999999886 7765
Q ss_pred --HHHHHHHccCC
Q 029984 153 --AATDLLNAGFA 163 (184)
Q Consensus 153 --~~~~L~~~G~~ 163 (184)
+++.+...|++
T Consensus 95 v~~~yl~~~~~~~ 107 (138)
T smart00195 95 LIIAYLMKYRNLS 107 (138)
T ss_pred HHHHHHHHHhCCC
Confidence 33455566764
No 70
>PLN02727 NAD kinase
Probab=93.31 E-value=0.67 Score=43.22 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=49.1
Q ss_pred CcccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCC------------CcEEeccccccCCCCCCCHHHHHHHHhcC-C-C
Q 029984 72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT------------GAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-K 136 (184)
Q Consensus 72 ~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIp------------gAi~ip~~~~~~~~~~~~~~~~~~~~~~l-~-~ 136 (184)
...+++++++++.+.| -.||+.|+..|- .+..+ .-+|+|.. ......++.+....+.+ + .
T Consensus 266 sgQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs----~~~apt~EqVe~fa~~l~~sl 340 (986)
T PLN02727 266 GGQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVE----VRTAPSAEQVEKFASLVSDSS 340 (986)
T ss_pred eCCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecC----CCCCCCHHHHHHHHHHHHhhc
Confidence 4468899999988888 469999997762 22221 23577752 11223456666666666 3 4
Q ss_pred CCeEEEEcCCChhH
Q 029984 137 HDEIIVGCQSGKRS 150 (184)
Q Consensus 137 ~~~ivv~c~~g~rs 150 (184)
.+||++||.+|.+.
T Consensus 341 pkPVLvHCKSGarR 354 (986)
T PLN02727 341 KKPIYLHSKEGVWR 354 (986)
T ss_pred CCCEEEECCCCCch
Confidence 78999999999953
No 71
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=93.04 E-value=0.3 Score=41.80 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=51.3
Q ss_pred CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc--------C-----CCCCeEEEEcCCChh-----
Q 029984 88 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--------F-----RKHDEIIVGCQSGKR----- 149 (184)
Q Consensus 88 ~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--------l-----~~~~~ivv~c~~g~r----- 149 (184)
..+||.|+.++|..||+-.|.|++... +++++..++..... + ..+..+.+. .+|..
T Consensus 327 FFiVDcRpaeqynaGHlstaFhlDc~l-----mlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfm-GsGr~EED~Y 400 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTAFHLDCVL-----MLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFM-GSGRDEEDNY 400 (669)
T ss_pred EEEEeccchhhcccccchhhhcccHHH-----HhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEe-ccCcchHHHH
Confidence 679999999999999999999988632 23334333322221 2 223455554 44321
Q ss_pred HHHHHHHHHHccCCCeeeccccHHHHH
Q 029984 150 SMMAATDLLNAGFAGITDIAGGFAAWR 176 (184)
Q Consensus 150 s~~~~~~L~~~G~~~v~~l~GG~~~W~ 176 (184)
-..+...+.+.+-.-|.++.||+....
T Consensus 401 mnMviA~FlQKnk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 401 MNMVIAMFLQKNKLYVSFVQGGYKKLH 427 (669)
T ss_pred HHHHHHHHHhcCceEEEEecchHHHHH
Confidence 223444555555556888999998765
No 72
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.87 E-value=0.94 Score=31.86 Aligned_cols=81 Identities=19% Similarity=0.151 Sum_probs=51.2
Q ss_pred CCcccCHHHHHHHHhCC-CeEEEcCChhhHh-------------cCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCC-
Q 029984 71 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFS-------------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR- 135 (184)
Q Consensus 71 ~~~~i~~~~~~~~~~~~-~~liDvR~~~e~~-------------~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~- 135 (184)
....++++++.++...+ ..||-.|+..|-. ..-+. -.+||.. +....++.++...+.++
T Consensus 12 VsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~-----~~~iT~~dV~~f~~Al~e 85 (130)
T COG3453 12 VSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVT-----GGGITEADVEAFQRALDE 85 (130)
T ss_pred ecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecC-----CCCCCHHHHHHHHHHHHH
Confidence 44567888999988888 4588999755432 11111 3466652 22233455555544443
Q ss_pred CCCeEEEEcCCChhHHHHHHHH
Q 029984 136 KHDEIIVGCQSGKRSMMAATDL 157 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L 157 (184)
.+.|++.||.+|.||...+..-
T Consensus 86 aegPVlayCrsGtRs~~ly~~~ 107 (130)
T COG3453 86 AEGPVLAYCRSGTRSLNLYGLG 107 (130)
T ss_pred hCCCEEeeecCCchHHHHHHHH
Confidence 4779999999999997766443
No 73
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=91.90 E-value=0.37 Score=38.60 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=53.4
Q ss_pred cCHHHHHHHHhCC-CeEEEcCChhhHhcCCCCCcEEeccccccCC----CCCCCHHHHHHHH-hcCC----CCCeEEEEc
Q 029984 75 VPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGS----GMTKNLKFVEEVS-TRFR----KHDEIIVGC 144 (184)
Q Consensus 75 i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~----~~~~~~~~~~~~~-~~l~----~~~~ivv~c 144 (184)
++++.+.+.+..+ ..++|.|+ +..||.+|+|+-+..++.. |.+.--..+.... .... +..++|.|+
T Consensus 6 ~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v~vilyD 81 (343)
T KOG1717|consen 6 KSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGTVTVILYD 81 (343)
T ss_pred HHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCcceeeecc
Confidence 4556666665544 88899999 6789999998876422110 0000000000000 0001 225678887
Q ss_pred CCCh--h----HHH----HHHHHHHccCCCeeeccccHHHHHhC
Q 029984 145 QSGK--R----SMM----AATDLLNAGFAGITDIAGGFAAWRQN 178 (184)
Q Consensus 145 ~~g~--r----s~~----~~~~L~~~G~~~v~~l~GG~~~W~~~ 178 (184)
.+.. . +.. .-..++..|+. ++.|.|||..++.+
T Consensus 82 ~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 82 ESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE 124 (343)
T ss_pred cccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence 6511 1 111 12455567874 88899999887654
No 74
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=89.09 E-value=1.2 Score=33.21 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=38.3
Q ss_pred HHHHHHHhCC-CeEEEcCChhhHhcCCCCC-----------cEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcC
Q 029984 78 RVAHELLQAG-HRYLDVRTPEEFSAGHATG-----------AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ 145 (184)
Q Consensus 78 ~~~~~~~~~~-~~liDvR~~~e~~~ghIpg-----------Ai~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~ 145 (184)
.++.++.+.+ ..||=.=+..|...-.+|+ -+|+|..+...+......+.+.++...+..+++|+++|.
T Consensus 62 ~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~ 141 (168)
T PF05706_consen 62 ADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCR 141 (168)
T ss_dssp HHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-S
T ss_pred HHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 3455555555 2344466677776555553 246776432222110111233344444667889999999
Q ss_pred CCh-hHHH-HHHHHHHcc
Q 029984 146 SGK-RSMM-AATDLLNAG 161 (184)
Q Consensus 146 ~g~-rs~~-~~~~L~~~G 161 (184)
+|. |+.. ++..|.++|
T Consensus 142 GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 142 GGLGRTGLVAACLLLELG 159 (168)
T ss_dssp SSSSHHHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHc
Confidence 775 7765 556666666
No 75
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=86.65 E-value=1.9 Score=30.06 Aligned_cols=81 Identities=15% Similarity=0.209 Sum_probs=40.9
Q ss_pred HHhCC-CeEEEcCChhhH---hcCCCCCcEEeccccccCCCCCCCHHHHHHH-HhcCCCCCeEEEEcCCCh-hHHHHH--
Q 029984 83 LLQAG-HRYLDVRTPEEF---SAGHATGAINVPYMYRVGSGMTKNLKFVEEV-STRFRKHDEIIVGCQSGK-RSMMAA-- 154 (184)
Q Consensus 83 ~~~~~-~~liDvR~~~e~---~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ivv~c~~g~-rs~~~~-- 154 (184)
+.+.+ ..+|+++...+. ....--.-.++|..+.........-+.+... .....++.+|+|+|..|. ||..++
T Consensus 14 l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~a 93 (133)
T PF00782_consen 14 LKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAA 93 (133)
T ss_dssp HHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHH
T ss_pred HHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHH
Confidence 33455 468999976543 2222224466775431111111111112222 222456789999999876 766533
Q ss_pred HHHHHccCC
Q 029984 155 TDLLNAGFA 163 (184)
Q Consensus 155 ~~L~~~G~~ 163 (184)
..+...|++
T Consensus 94 yLm~~~~~~ 102 (133)
T PF00782_consen 94 YLMKKNGMS 102 (133)
T ss_dssp HHHHHHTSS
T ss_pred HHHHHcCCC
Confidence 344445653
No 76
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=85.65 E-value=1.4 Score=33.00 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=21.2
Q ss_pred HHhcCCCCCeEEEEcCCCh-hHHHHH--HHHHHccC
Q 029984 130 VSTRFRKHDEIIVGCQSGK-RSMMAA--TDLLNAGF 162 (184)
Q Consensus 130 ~~~~l~~~~~ivv~c~~g~-rs~~~~--~~L~~~G~ 162 (184)
+...+.+++.|+|+|..|. ||..+. +.+...|.
T Consensus 98 i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 98 IEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred HHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 3334567779999999776 776533 45555444
No 77
>PRK12361 hypothetical protein; Provisional
Probab=85.56 E-value=2 Score=38.00 Aligned_cols=79 Identities=20% Similarity=0.261 Sum_probs=41.4
Q ss_pred HHHHHHHHhCC-CeEEEcCChhhHhc-CCCC---CcEEeccccccCCCCCCCHHHHHHHHhc----CCCCCeEEEEcCCC
Q 029984 77 VRVAHELLQAG-HRYLDVRTPEEFSA-GHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSG 147 (184)
Q Consensus 77 ~~~~~~~~~~~-~~liDvR~~~e~~~-ghIp---gAi~ip~~~~~~~~~~~~~~~~~~~~~~----l~~~~~ivv~c~~g 147 (184)
..++..+.+.+ ..|||++.+.+... ...+ .-.++|..+...+ ..+.+....+. ...+.+|+|+|..|
T Consensus 110 a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p----~~~~l~~a~~~i~~~~~~~~~VlVHC~~G 185 (547)
T PRK12361 110 PADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVP----TLAQLNQAINWIHRQVRANKSVVVHCALG 185 (547)
T ss_pred cccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCC----cHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 34555555555 57899995332211 1112 2467776432211 22333333333 34578899999977
Q ss_pred h-hHHHH-HHHHHH
Q 029984 148 K-RSMMA-ATDLLN 159 (184)
Q Consensus 148 ~-rs~~~-~~~L~~ 159 (184)
. ||..+ +..|..
T Consensus 186 ~sRSa~vv~ayLm~ 199 (547)
T PRK12361 186 RGRSVLVLAAYLLC 199 (547)
T ss_pred CCcHHHHHHHHHHH
Confidence 6 77653 344443
No 78
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=84.75 E-value=5 Score=29.75 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=40.0
Q ss_pred HHHHHHHhCC-CeEEEcCC----hhhHhcCCCCCcEEeccccccCCCCCCCH----HHHHHHHhc----CCCCCeEEEEc
Q 029984 78 RVAHELLQAG-HRYLDVRT----PEEFSAGHATGAINVPYMYRVGSGMTKNL----KFVEEVSTR----FRKHDEIIVGC 144 (184)
Q Consensus 78 ~~~~~~~~~~-~~liDvR~----~~e~~~ghIpgAi~ip~~~~~~~~~~~~~----~~~~~~~~~----l~~~~~ivv~c 144 (184)
..++.+.+.+ ..+|.+-. ++++...+|. -.++|..+ +..... ++++..... +.++.+|+|+|
T Consensus 31 ~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~-~~~~p~~D----~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC 105 (166)
T PTZ00242 31 LYIKELQRYNVTHLVRVCGPTYDAELLEKNGIE-VHDWPFDD----GAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHC 105 (166)
T ss_pred HHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCE-EEecCCCC----CCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEEC
Confidence 3445555566 45777743 3445444553 34555531 111122 222222221 24588999999
Q ss_pred CCCh-hHHHH-HHHHHHcc
Q 029984 145 QSGK-RSMMA-ATDLLNAG 161 (184)
Q Consensus 145 ~~g~-rs~~~-~~~L~~~G 161 (184)
..|. ||..+ +..|.+.|
T Consensus 106 ~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 106 VAGLGRAPILVALALVEYG 124 (166)
T ss_pred CCCCCHHHHHHHHHHHHhC
Confidence 9775 77653 44454444
No 79
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=79.98 E-value=2.9 Score=30.97 Aligned_cols=76 Identities=17% Similarity=0.308 Sum_probs=32.7
Q ss_pred CeEEEcCChh------hHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEcCCCh-hHHHHHHHHH
Q 029984 88 HRYLDVRTPE------EFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGK-RSMMAATDLL 158 (184)
Q Consensus 88 ~~liDvR~~~------e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~~g~-rs~~~~~~L~ 158 (184)
-.||.+|+.. +|.+.+=-.-++++........+...++.+.+.++.+ +...||+|+|.+|. |...+.-.|+
T Consensus 34 KTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lR 113 (164)
T PF03162_consen 34 KTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLR 113 (164)
T ss_dssp SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHH
T ss_pred ceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHH
Confidence 3577887652 2322332344555543111112223445666555543 34679999999876 6666666666
Q ss_pred Hc-cCC
Q 029984 159 NA-GFA 163 (184)
Q Consensus 159 ~~-G~~ 163 (184)
+. |+.
T Consensus 114 k~Q~W~ 119 (164)
T PF03162_consen 114 KLQGWS 119 (164)
T ss_dssp HHTTB-
T ss_pred HHcCCC
Confidence 43 653
No 80
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=77.46 E-value=18 Score=28.68 Aligned_cols=81 Identities=15% Similarity=0.227 Sum_probs=42.6
Q ss_pred HHHHHHHhCC-CeEEEcCCh----hhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc----CCCCCeEEEEcCCCh
Q 029984 78 RVAHELLQAG-HRYLDVRTP----EEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSGK 148 (184)
Q Consensus 78 ~~~~~~~~~~-~~liDvR~~----~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~----l~~~~~ivv~c~~g~ 148 (184)
..++++...+ ..||++.++ ++|....|. -.++|+. ++.....+.+...... +..+.+|+|+|..|.
T Consensus 107 ~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~-~~~lpip----Dg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGl 181 (241)
T PTZ00393 107 LYIKEMKNYNVTDLVRTCERTYNDGEITSAGIN-VHELIFP----DGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGL 181 (241)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCe-EEEeecC----CCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCC
Confidence 3344444455 457777542 344433332 1345553 2222333433333332 356788999999765
Q ss_pred -hHHH-HHHHHHHccCC
Q 029984 149 -RSMM-AATDLLNAGFA 163 (184)
Q Consensus 149 -rs~~-~~~~L~~~G~~ 163 (184)
|+.. ++..|.+.|++
T Consensus 182 GRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 182 GRAPVLASIVLIEFGMD 198 (241)
T ss_pred CHHHHHHHHHHHHcCCC
Confidence 7664 55666667764
No 81
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=77.29 E-value=7.9 Score=32.31 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=35.0
Q ss_pred eeecCCCcccccccccc--Cc-----ccccCCCCcccCHH-HHHHHHhCCCeEEEcCChhhHhc---CCCCC
Q 029984 46 IGFISSKILSFCPKASL--RG-----NLEAVGVPTSVPVR-VAHELLQAGHRYLDVRTPEEFSA---GHATG 106 (184)
Q Consensus 46 ~~~l~~~~~~~~~~~~~--~~-----~~~~~~~~~~i~~~-~~~~~~~~~~~liDvR~~~e~~~---ghIpg 106 (184)
+..+.|+|..|+..... .. .......++-.... .+..+.+.+..+||+|+..+|.. |++++
T Consensus 116 v~~L~GG~~awr~~~~~~~~~~~~~~~~ivl~G~TGsGKT~iL~~L~~~~~~vlDlE~~aehrGS~fG~~~~ 187 (345)
T PRK11784 116 VPRLEGGYKAYRRFVIDTLEEAPAQFPLVVLGGNTGSGKTELLQALANAGAQVLDLEGLANHRGSSFGRLGG 187 (345)
T ss_pred cEEEcCCHHHHHHhhHHHHhhhcccCceEecCCCCcccHHHHHHHHHhcCCeEEECCchhhhccccccCCCC
Confidence 46789999999862211 10 11111222333333 34455455788999999999973 44444
No 82
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=75.44 E-value=9.4 Score=28.25 Aligned_cols=32 Identities=28% Similarity=0.554 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCh---hHHHHHHHHHHccCCCeee
Q 029984 135 RKHDEIIVGCQSGK---RSMMAATDLLNAGFAGITD 167 (184)
Q Consensus 135 ~~~~~ivv~c~~g~---rs~~~~~~L~~~G~~~v~~ 167 (184)
.+..+|+|+|..|+ .+-.+++.|...|++ |.+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 67789999998765 566788999999996 655
No 83
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=72.42 E-value=4.6 Score=29.70 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=22.6
Q ss_pred CCCCeEEEEc-C----CChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 135 RKHDEIIVGC-Q----SGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 135 ~~~~~ivv~c-~----~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
+++..+++++ + .|.....++..|+++|..+...||||-.
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgS 141 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGS 141 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcc
Confidence 3444555554 4 3667778999999999999999999854
No 84
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=71.10 E-value=7.2 Score=29.47 Aligned_cols=34 Identities=32% Similarity=0.530 Sum_probs=25.2
Q ss_pred ccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEecc
Q 029984 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112 (184)
Q Consensus 74 ~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~ 112 (184)
.++.++..+.+..+.-||||..|.|=.- | -|+||
T Consensus 7 Pin~eEA~eAieGGAdIiDVKNP~EGSL----G-ANFPW 40 (235)
T COG1891 7 PINREEAIEAIEGGADIIDVKNPAEGSL----G-ANFPW 40 (235)
T ss_pred cCCHHHHHHHhhCCCceEeccCcccCcc----c-CCChH
Confidence 4666788888888899999999987221 1 27776
No 85
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=70.29 E-value=15 Score=28.32 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=26.2
Q ss_pred hcCCC--CCeEEEEcCC---ChhHHHHHHHHHHccCCCeee
Q 029984 132 TRFRK--HDEIIVGCQS---GKRSMMAATDLLNAGFAGITD 167 (184)
Q Consensus 132 ~~l~~--~~~ivv~c~~---g~rs~~~~~~L~~~G~~~v~~ 167 (184)
+..+. .++++|+|.. |...-.+++.|...|++ |.+
T Consensus 42 ~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v 81 (203)
T COG0062 42 REYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTV 81 (203)
T ss_pred HHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEE
Confidence 33454 5689999975 45788899999999985 554
No 86
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=68.63 E-value=20 Score=26.03 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=27.7
Q ss_pred CCCCCeEEEEcC-CCh---hHHHHHHHHHHccCCCeeeccccH
Q 029984 134 FRKHDEIIVGCQ-SGK---RSMMAATDLLNAGFAGITDIAGGF 172 (184)
Q Consensus 134 l~~~~~ivv~c~-~g~---rs~~~~~~L~~~G~~~v~~l~GG~ 172 (184)
+..+..+|.+|. +|. ........|++.|.+++.++.||.
T Consensus 60 ~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 60 VEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred HhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 345666777776 332 255677889999998888777774
No 87
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=66.22 E-value=11 Score=26.29 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=21.8
Q ss_pred eEEEEcCC-ChhHHHHHHHHHHccCCCeeeccccH
Q 029984 139 EIIVGCQS-GKRSMMAATDLLNAGFAGITDIAGGF 172 (184)
Q Consensus 139 ~ivv~c~~-g~rs~~~~~~L~~~G~~~v~~l~GG~ 172 (184)
.|+|+|.+ -.||..+...|+.++-+++.+...|.
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~ 36 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGL 36 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 57788864 34777777777766544555555554
No 88
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=64.41 E-value=21 Score=27.35 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=25.7
Q ss_pred cCCCCCeEEEEcCC---ChhHHHHHHHHHHccCCCeeec
Q 029984 133 RFRKHDEIIVGCQS---GKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 133 ~l~~~~~ivv~c~~---g~rs~~~~~~L~~~G~~~v~~l 168 (184)
.+++.++|+|+|.. |.....+++.|...|++ |+.+
T Consensus 41 ~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~-V~~~ 78 (205)
T TIGR00197 41 AFPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVE-VFLL 78 (205)
T ss_pred HcCCCCeEEEEECCCCCccHHHHHHHHHHhCCCE-EEEE
Confidence 34556789999974 55788889999887774 6654
No 89
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=62.75 E-value=37 Score=23.17 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccc
Q 029984 125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 170 (184)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~G 170 (184)
+.+....+.++++..++|.|+-+.-+...........+++++++.|
T Consensus 45 ~~l~~~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~~~~~~~~vi~G 90 (116)
T PF03610_consen 45 EKLEEAIEELDEGDGVLILTDLGGGSPFNEAARLLLDKPNIRVISG 90 (116)
T ss_dssp HHHHHHHHHCCTTSEEEEEESSTTSHHHHHHHHHHCTSTTEEEEES
T ss_pred HHHHHHHHhccCCCcEEEEeeCCCCccchHHHHHhccCCCEEEEec
Confidence 4455556667778889999985443333333333334445655544
No 90
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=61.54 E-value=14 Score=29.29 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=23.9
Q ss_pred CeEEEEcCC---ChhHHHHHHHHHHccCCCeeec
Q 029984 138 DEIIVGCQS---GKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 138 ~~ivv~c~~---g~rs~~~~~~L~~~G~~~v~~l 168 (184)
++|+|+|.. |...-.+++.|...||+ |.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 679999974 55788899999999995 6554
No 91
>PRK10565 putative carbohydrate kinase; Provisional
Probab=60.54 E-value=22 Score=31.37 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=25.4
Q ss_pred CCCCCeEEEEcCC---ChhHHHHHHHHHHccCCCeeec
Q 029984 134 FRKHDEIIVGCQS---GKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 134 l~~~~~ivv~c~~---g~rs~~~~~~L~~~G~~~v~~l 168 (184)
+++.++|+|+|.. |.+...+++.|...||+ |.++
T Consensus 57 ~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 57 YPDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred cCCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 4455679999974 45777889999999995 6543
No 92
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=59.00 E-value=18 Score=30.33 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHH
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 174 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~ 174 (184)
++++|+|+ ..|..+..++..|...|+.++.++++..-+
T Consensus 134 ~~~~Vlvv-G~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~ 171 (376)
T PRK08762 134 LEARVLLI-GAGGLGSPAALYLAAAGVGTLGIVDHDVVD 171 (376)
T ss_pred hcCcEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCEec
Confidence 34556666 666677789999999999999999987443
No 93
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=58.43 E-value=30 Score=23.39 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=24.9
Q ss_pred eEEEEcCCChhHHHHHH----HHHHccCCCeeeccccHHHHH
Q 029984 139 EIIVGCQSGKRSMMAAT----DLLNAGFAGITDIAGGFAAWR 176 (184)
Q Consensus 139 ~ivv~c~~g~rs~~~~~----~L~~~G~~~v~~l~GG~~~W~ 176 (184)
+|++.|.+|..|..++. .+++.|++ +.+...+..+..
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~~e~~ 42 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAYGSHY 42 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeHHHHH
Confidence 48899998887776664 44567884 666666665543
No 94
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=57.00 E-value=26 Score=22.62 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=13.3
Q ss_pred CCCeEEEEcCCCh-hHHHH
Q 029984 136 KHDEIIVGCQSGK-RSMMA 153 (184)
Q Consensus 136 ~~~~ivv~c~~g~-rs~~~ 153 (184)
.+.+|+|+|..|. |+..+
T Consensus 38 ~~~pvlVHC~~G~gRtg~~ 56 (105)
T smart00404 38 SSGPVVVHCSAGVGRTGTF 56 (105)
T ss_pred CCCCEEEEeCCCCChhhHH
Confidence 3679999999765 76643
No 95
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=57.00 E-value=26 Score=22.62 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=13.3
Q ss_pred CCCeEEEEcCCCh-hHHHH
Q 029984 136 KHDEIIVGCQSGK-RSMMA 153 (184)
Q Consensus 136 ~~~~ivv~c~~g~-rs~~~ 153 (184)
.+.+|+|+|..|. |+..+
T Consensus 38 ~~~pvlVHC~~G~gRtg~~ 56 (105)
T smart00012 38 SSGPVVVHCSAGVGRTGTF 56 (105)
T ss_pred CCCCEEEEeCCCCChhhHH
Confidence 3679999999765 76643
No 96
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=56.68 E-value=44 Score=30.50 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
+.++++|+|++-..+...+..|.+.|+. +..|.|...
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~-~~~Lhg~~~ 508 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLP-HQVLNAKQD 508 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCC-EEEeeCCcH
Confidence 4678999999999999999999999995 667777644
No 97
>PRK13530 arsenate reductase; Provisional
Probab=56.41 E-value=28 Score=24.65 Aligned_cols=35 Identities=20% Similarity=0.007 Sum_probs=23.6
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHccCCCeeeccccH
Q 029984 138 DEIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGF 172 (184)
Q Consensus 138 ~~ivv~c~~g-~rs~~~~~~L~~~G~~~v~~l~GG~ 172 (184)
+.|+|+|.+. .||..+...+....-+++.+...|+
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 4688889754 4887777777665434566666665
No 98
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=56.14 E-value=97 Score=24.83 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=39.5
Q ss_pred CCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeec
Q 029984 122 KNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 122 ~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l 168 (184)
.+.+.++.....+.++..+++||..-.+..+....|++.|+.++..+
T Consensus 173 ~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 173 DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhh
Confidence 34578888888888889999999998899999999999999776543
No 99
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=56.05 E-value=24 Score=29.03 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCC-CeeeccccH
Q 029984 125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA-GITDIAGGF 172 (184)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~-~v~~l~GG~ 172 (184)
+.+..+...+.++.+++|+|++-..+...+..|.+.+.+ ++..+.|++
T Consensus 210 ~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~ 258 (358)
T TIGR01587 210 SSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRF 258 (358)
T ss_pred HHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 344445554556778999999988888899999988874 577788875
No 100
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=53.70 E-value=23 Score=23.61 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=25.2
Q ss_pred CCeEEEEcCCChhHHHHH----HHHHHccCCCeeeccccHHHH
Q 029984 137 HDEIIVGCQSGKRSMMAA----TDLLNAGFAGITDIAGGFAAW 175 (184)
Q Consensus 137 ~~~ivv~c~~g~rs~~~~----~~L~~~G~~~v~~l~GG~~~W 175 (184)
.+.|++.|.+|..+..++ ..+.+.|++ +.+-..++.+-
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHHH
Confidence 467999999998766555 444567874 55555555544
No 101
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=53.63 E-value=9.5 Score=31.72 Aligned_cols=36 Identities=14% Similarity=-0.003 Sum_probs=27.8
Q ss_pred CCcccCHHHHHHHHh-------CCCeEEEcCChhhHhcCCCCCc
Q 029984 71 VPTSVPVRVAHELLQ-------AGHRYLDVRTPEEFSAGHATGA 107 (184)
Q Consensus 71 ~~~~i~~~~~~~~~~-------~~~~liDvR~~~e~~~ghIpgA 107 (184)
....++++++.+.++ .+..+||||++. |+..++|+-
T Consensus 275 ~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~g 317 (339)
T PRK07688 275 HKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDG 317 (339)
T ss_pred CcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCC
Confidence 345788888887762 357899999988 998888843
No 102
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=53.28 E-value=49 Score=23.27 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
++++++|+ ..|..+..++..|...|+++++++.--..
T Consensus 11 ~~~~vlvi-GaGg~ar~v~~~L~~~g~~~i~i~nRt~~ 47 (135)
T PF01488_consen 11 KGKRVLVI-GAGGAARAVAAALAALGAKEITIVNRTPE 47 (135)
T ss_dssp TTSEEEEE-SSSHHHHHHHHHHHHTTSSEEEEEESSHH
T ss_pred CCCEEEEE-CCHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 35667777 55778888899999999988888765443
No 103
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=53.14 E-value=33 Score=29.87 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=23.5
Q ss_pred CeEEEEcCC---ChhHHHHHHHHHHccCCCeeec
Q 029984 138 DEIIVGCQS---GKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 138 ~~ivv~c~~---g~rs~~~~~~L~~~G~~~v~~l 168 (184)
++|+|+|.. |+.+-.+++.|...||+ |.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 679999975 45677899999999996 6543
No 104
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=52.94 E-value=38 Score=24.83 Aligned_cols=49 Identities=27% Similarity=0.256 Sum_probs=32.1
Q ss_pred HHHHHhcCCCCCeEEEEcCCCh--hHHHHHHHHHH---ccCCCeeeccccHHHH
Q 029984 127 VEEVSTRFRKHDEIIVGCQSGK--RSMMAATDLLN---AGFAGITDIAGGFAAW 175 (184)
Q Consensus 127 ~~~~~~~l~~~~~ivv~c~~g~--rs~~~~~~L~~---~G~~~v~~l~GG~~~W 175 (184)
-+.++..++++..+|+.+..|. .|...+..|.. .|..++..+-||-.++
T Consensus 57 ~~~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 57 GERILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HHHHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HHHHHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 3445566777888888887775 57788877776 5877888888986544
No 105
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=52.82 E-value=80 Score=22.35 Aligned_cols=16 Identities=13% Similarity=-0.141 Sum_probs=8.8
Q ss_pred HHHHHHh-CCCeEEEcC
Q 029984 79 VAHELLQ-AGHRYLDVR 94 (184)
Q Consensus 79 ~~~~~~~-~~~~liDvR 94 (184)
.+..++. .++.++|.-
T Consensus 21 iv~~~l~~~GfeVi~lg 37 (132)
T TIGR00640 21 VIATAYADLGFDVDVGP 37 (132)
T ss_pred HHHHHHHhCCcEEEECC
Confidence 3444443 457777764
No 106
>PRK10126 tyrosine phosphatase; Provisional
Probab=52.12 E-value=18 Score=26.04 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=24.4
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHccCCCeeeccccHHHH
Q 029984 138 DEIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGFAAW 175 (184)
Q Consensus 138 ~~ivv~c~~g-~rs~~~~~~L~~~G~~~v~~l~GG~~~W 175 (184)
..|+|+|.+. .||..+...|++.+- .+.+...|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 4688889754 488888888887653 355556665443
No 107
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=51.03 E-value=29 Score=30.89 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCC--CCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccH
Q 029984 124 LKFVEEVSTRFR--KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 172 (184)
Q Consensus 124 ~~~~~~~~~~l~--~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~ 172 (184)
.+....+...+. -+.|+||+.|.-..+..++..|.++|| +++.|.||-
T Consensus 502 d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 502 DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 333444443332 367888888887777889999999999 588999984
No 108
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=51.01 E-value=21 Score=25.32 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=24.5
Q ss_pred eEEEEcCCC-hhHHHHHHHHHHccCC-CeeeccccHHHH
Q 029984 139 EIIVGCQSG-KRSMMAATDLLNAGFA-GITDIAGGFAAW 175 (184)
Q Consensus 139 ~ivv~c~~g-~rs~~~~~~L~~~G~~-~v~~l~GG~~~W 175 (184)
.|+|+|.+. .||..+...+++..-+ ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 578888643 4787777777765433 566777776543
No 109
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=50.77 E-value=20 Score=25.71 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=26.0
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHccCCCeeeccccHHH
Q 029984 138 DEIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGFAA 174 (184)
Q Consensus 138 ~~ivv~c~~g-~rs~~~~~~L~~~G~~~v~~l~GG~~~ 174 (184)
..|+|+|.+. .||..+-..++...-+++.+...|..+
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~ 40 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGG 40 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCC
Confidence 4688888743 488887777777644677777777543
No 110
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=50.74 E-value=20 Score=25.79 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=23.8
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHccCCCeeeccccHHHH
Q 029984 138 DEIIVGCQSG-KRSMMAATDLLNAGFAGITDIAGGFAAW 175 (184)
Q Consensus 138 ~~ivv~c~~g-~rs~~~~~~L~~~G~~~v~~l~GG~~~W 175 (184)
+.|+|+|.+. .||..+...|+...- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 3688888643 488887777776542 355566665544
No 111
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=50.56 E-value=52 Score=21.75 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=23.9
Q ss_pred eEEEEcCCCh-hHHHHH----HHHHHccCCCeeeccccHHHHH
Q 029984 139 EIIVGCQSGK-RSMMAA----TDLLNAGFAGITDIAGGFAAWR 176 (184)
Q Consensus 139 ~ivv~c~~g~-rs~~~~----~~L~~~G~~~v~~l~GG~~~W~ 176 (184)
+|++.|++|. .|..++ ..|.+.|++ +.+....+.+..
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~e~~ 45 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVNEIE 45 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecHHHHh
Confidence 5899999998 444433 556677884 555555555543
No 112
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=50.47 E-value=68 Score=29.56 Aligned_cols=89 Identities=19% Similarity=0.218 Sum_probs=56.4
Q ss_pred cCHHHHHHHHhC----C-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChh
Q 029984 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 149 (184)
Q Consensus 75 i~~~~~~~~~~~----~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~r 149 (184)
++.+++.++++. + -.||.|++.+|.+..-=-|+.-|=.+......+..+.+....+...++++ +++++.+|..
T Consensus 144 L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~--~~~VsESGI~ 221 (695)
T PRK13802 144 LDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDD--VIKVAESGVF 221 (695)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCC--cEEEEcCCCC
Confidence 445566665542 3 47899999999874322344333222122223334556666777777754 5677899999
Q ss_pred HHHHHHHHHHccCCCe
Q 029984 150 SMMAATDLLNAGFAGI 165 (184)
Q Consensus 150 s~~~~~~L~~~G~~~v 165 (184)
+..-...|.+.|++-+
T Consensus 222 ~~~d~~~l~~~G~dav 237 (695)
T PRK13802 222 GAVEVEDYARAGADAV 237 (695)
T ss_pred CHHHHHHHHHCCCCEE
Confidence 9999999999999743
No 113
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=50.41 E-value=27 Score=26.27 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=27.5
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeec
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l 168 (184)
+++.|+++++ +|.....++..|.+.|...|+++
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 3578999886 68888899999999999888765
No 114
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=49.07 E-value=67 Score=21.43 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccH
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 172 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~ 172 (184)
.+.+++|+|.+-.........|.+.+. ++..+.|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 567899999988788888888888765 477777774
No 115
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=49.01 E-value=41 Score=29.97 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=23.4
Q ss_pred CeEEEEcCC---ChhHHHHHHHHHHccCCCeeec
Q 029984 138 DEIIVGCQS---GKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 138 ~~ivv~c~~---g~rs~~~~~~L~~~G~~~v~~l 168 (184)
++|+|+|.. |+..-.+++.|...||+ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 579999975 44677889999999995 6553
No 116
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=48.75 E-value=26 Score=30.36 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=29.2
Q ss_pred CCCeEEEEcCC---ChhHHHHHHHHHHccCCCeeecc
Q 029984 136 KHDEIIVGCQS---GKRSMMAATDLLNAGFAGITDIA 169 (184)
Q Consensus 136 ~~~~ivv~c~~---g~rs~~~~~~L~~~G~~~v~~l~ 169 (184)
++++||+++++ |..+.+...+|+++|-+.|++-.
T Consensus 347 ~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvri 383 (470)
T COG0034 347 KGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRI 383 (470)
T ss_pred CCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEe
Confidence 58899999986 77899999999999998887643
No 117
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=48.65 E-value=36 Score=25.03 Aligned_cols=50 Identities=22% Similarity=0.181 Sum_probs=34.4
Q ss_pred HHHHHHhcCCCCCeEEEEcCCCh--hHHHHHHHHHHc---cCCCeeeccccHHHH
Q 029984 126 FVEEVSTRFRKHDEIIVGCQSGK--RSMMAATDLLNA---GFAGITDIAGGFAAW 175 (184)
Q Consensus 126 ~~~~~~~~l~~~~~ivv~c~~g~--rs~~~~~~L~~~---G~~~v~~l~GG~~~W 175 (184)
.-+.+...++++..+|+.+..|. .|...+..|.+. |..++..+-||-.++
T Consensus 56 E~~~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 56 EGERILAALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred HHHHHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 34455666777777777776665 588888888654 555788888986655
No 118
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=47.07 E-value=29 Score=29.59 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=27.7
Q ss_pred CCCeEEEEcCC---ChhHHHHHHHHHHccCCCeee
Q 029984 136 KHDEIIVGCQS---GKRSMMAATDLLNAGFAGITD 167 (184)
Q Consensus 136 ~~~~ivv~c~~---g~rs~~~~~~L~~~G~~~v~~ 167 (184)
.+++||+++++ |..+....++|++.|-++|++
T Consensus 355 ~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~ 389 (474)
T KOG0572|consen 355 EGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHI 389 (474)
T ss_pred CCceEEEEecceeccCchHHHHHHHHHcCCcEEEE
Confidence 57889999986 778889999999999988875
No 119
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=46.89 E-value=27 Score=24.60 Aligned_cols=31 Identities=19% Similarity=-0.052 Sum_probs=12.1
Q ss_pred EEEcCCC-hhHHHHHHHHHHccCCCeeecccc
Q 029984 141 IVGCQSG-KRSMMAATDLLNAGFAGITDIAGG 171 (184)
Q Consensus 141 vv~c~~g-~rs~~~~~~L~~~G~~~v~~l~GG 171 (184)
+|+|.+. .||..+...+....-+++.+...|
T Consensus 2 LFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG 33 (129)
T TIGR02691 2 YFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAG 33 (129)
T ss_pred EEEcCCchHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4445422 244444444443321234334444
No 120
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=45.89 E-value=32 Score=23.43 Aligned_cols=36 Identities=25% Similarity=0.192 Sum_probs=23.7
Q ss_pred eEEEEcCCChhHHHHHHH----HHHccCCCeeeccccHHHH
Q 029984 139 EIIVGCQSGKRSMMAATD----LLNAGFAGITDIAGGFAAW 175 (184)
Q Consensus 139 ~ivv~c~~g~rs~~~~~~----L~~~G~~~v~~l~GG~~~W 175 (184)
+|++.|.+|..+..++.. +.+.|++ +.+-..+..+-
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e~ 42 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATEG 42 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 689999999876666544 4556774 55545555443
No 121
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=45.30 E-value=1.3e+02 Score=25.17 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=53.9
Q ss_pred cCHHHHHHHHhC----C-CeEEEcCChhhHhcC-CCCCcEEeccccccCCCCCCCHHHHHHHHh-----cCCCCCeEEEE
Q 029984 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAG-HATGAINVPYMYRVGSGMTKNLKFVEEVST-----RFRKHDEIIVG 143 (184)
Q Consensus 75 i~~~~~~~~~~~----~-~~liDvR~~~e~~~g-hIpgAi~ip~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~ivv~ 143 (184)
++.+++.++++- + -.||.|.+.+|.+.. .+.|+.-|=.+......+..+.+....+.. .++++ .++++
T Consensus 214 L~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~-~~~~V 292 (338)
T PLN02460 214 LPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREK-GIIVV 292 (338)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCC-CeEEE
Confidence 455556655531 3 578999999998642 333543333221122222333444444544 34333 46778
Q ss_pred cCCChhHHHHHHHHHHccCCCe
Q 029984 144 CQSGKRSMMAATDLLNAGFAGI 165 (184)
Q Consensus 144 c~~g~rs~~~~~~L~~~G~~~v 165 (184)
+.+|.....-...|...|++-|
T Consensus 293 sESGI~t~~Dv~~l~~~GadAv 314 (338)
T PLN02460 293 GESGLFTPDDVAYVQNAGVKAV 314 (338)
T ss_pred ECCCCCCHHHHHHHHHCCCCEE
Confidence 8999999999999999999743
No 122
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=45.24 E-value=9.1 Score=30.54 Aligned_cols=90 Identities=24% Similarity=0.262 Sum_probs=52.6
Q ss_pred ccCHHHHHHHHh----CC-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCCh
Q 029984 74 SVPVRVAHELLQ----AG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148 (184)
Q Consensus 74 ~i~~~~~~~~~~----~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~ 148 (184)
.++.+++.++++ =| -.+|.|++.+|.+..---|+.-|=.+......+..+.+....+...++++ ++++..+|.
T Consensus 141 ~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~--~~~iseSGI 218 (254)
T PF00218_consen 141 ILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKD--VIVISESGI 218 (254)
T ss_dssp GSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTT--SEEEEESS-
T ss_pred hCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccc--eeEEeecCC
Confidence 456666666654 24 57899999999874221233221111111122222335555666667755 566678999
Q ss_pred hHHHHHHHHHHccCCCe
Q 029984 149 RSMMAATDLLNAGFAGI 165 (184)
Q Consensus 149 rs~~~~~~L~~~G~~~v 165 (184)
.+..-+..|...|++-+
T Consensus 219 ~~~~d~~~l~~~G~dav 235 (254)
T PF00218_consen 219 KTPEDARRLARAGADAV 235 (254)
T ss_dssp SSHHHHHHHCTTT-SEE
T ss_pred CCHHHHHHHHHCCCCEE
Confidence 99999999999999743
No 123
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=44.42 E-value=40 Score=22.81 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=26.3
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHccCCCeee
Q 029984 135 RKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 167 (184)
Q Consensus 135 ~~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~ 167 (184)
.+++.++++++ +|.....+...|++.|.+.|..
T Consensus 86 ~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 86 IKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp GTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred ccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 35778888875 7888888999999999876553
No 124
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=43.97 E-value=1.1e+02 Score=21.15 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=8.9
Q ss_pred HHHHHHHccCCCeeecccc
Q 029984 153 AATDLLNAGFAGITDIAGG 171 (184)
Q Consensus 153 ~~~~L~~~G~~~v~~l~GG 171 (184)
....|++.|+.++.++-||
T Consensus 70 ~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 70 VIELLRELGAGDILVVGGG 88 (122)
T ss_pred HHHHHHhcCCCCCEEEEEC
Confidence 3344445555444444443
No 125
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.01 E-value=47 Score=28.74 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
+++..||||++-..+..++..|.+.|+. +..|.||+.
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 4566799999998999999999999985 667778754
No 126
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=42.80 E-value=74 Score=25.00 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=25.9
Q ss_pred HHHHHHhcCC---CCCeEEEEcCCChh-HHH----HHHHHHHccCCCeee
Q 029984 126 FVEEVSTRFR---KHDEIIVGCQSGKR-SMM----AATDLLNAGFAGITD 167 (184)
Q Consensus 126 ~~~~~~~~l~---~~~~ivv~c~~g~r-s~~----~~~~L~~~G~~~v~~ 167 (184)
.++.+...++ ++..+|+.|.+... |.. .-..|.+.||++|++
T Consensus 123 ~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v 172 (265)
T COG4822 123 CVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFV 172 (265)
T ss_pred HHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEE
Confidence 4444455555 77778888875432 222 225667789988875
No 127
>PTZ00110 helicase; Provisional
Probab=42.68 E-value=54 Score=29.10 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=33.8
Q ss_pred HHHHHhcCC-CCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 127 VEEVSTRFR-KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 127 ~~~~~~~l~-~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
+..++..+. ...++||||++-..+..++..|...|+. +..+.|++.
T Consensus 366 L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~-~~~ihg~~~ 412 (545)
T PTZ00110 366 LKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWP-ALCIHGDKK 412 (545)
T ss_pred HHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCc-EEEEECCCc
Confidence 333444332 5678999999988898999999999985 556777653
No 128
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=42.33 E-value=39 Score=27.58 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=26.3
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeee
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 167 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~ 167 (184)
+++.++++++ +|.....+++.|++.|..+|+.
T Consensus 210 ~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 244 (301)
T PRK07199 210 AGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDC 244 (301)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEE
Confidence 5678888875 6888889999999999987654
No 129
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=42.13 E-value=66 Score=26.30 Aligned_cols=44 Identities=16% Similarity=0.104 Sum_probs=31.8
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeecc-------ccHHHHHhCC
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA-------GGFAAWRQNG 179 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l~-------GG~~~W~~~g 179 (184)
+++.++++++ +|..-..++..|++.|..+|+.+. +++....+.|
T Consensus 200 ~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~~~ 253 (304)
T PRK03092 200 EGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCG 253 (304)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHHCC
Confidence 4677888875 677888899999999998876433 3455555554
No 130
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=42.08 E-value=78 Score=19.26 Aligned_cols=38 Identities=5% Similarity=-0.071 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCC
Q 029984 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 163 (184)
Q Consensus 126 ~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~ 163 (184)
.+...+..++.+..+.|..++......+..++.+.||+
T Consensus 16 ~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~ 53 (70)
T PF01206_consen 16 KAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYE 53 (70)
T ss_dssp HHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEE
T ss_pred HHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCE
Confidence 55666777888888888888776667888999999995
No 131
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=41.33 E-value=40 Score=25.60 Aligned_cols=32 Identities=22% Similarity=0.131 Sum_probs=23.4
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeee
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 167 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~ 167 (184)
+++..|++++ +|..-..++..|++.|-.+||.
T Consensus 82 ~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~ 116 (184)
T PF14572_consen 82 KGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYA 116 (184)
T ss_dssp TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEE
T ss_pred cCCeEeeecccccchHHHHHHHHHHHHcCCCEEEE
Confidence 4566677654 6777778888888888877764
No 132
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=40.32 E-value=39 Score=22.45 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=23.5
Q ss_pred eEEEEcCCChhHHHHHH----HHHHccCCCeeeccccHHHH
Q 029984 139 EIIVGCQSGKRSMMAAT----DLLNAGFAGITDIAGGFAAW 175 (184)
Q Consensus 139 ~ivv~c~~g~rs~~~~~----~L~~~G~~~v~~l~GG~~~W 175 (184)
+|++.|.+|..+..++. .+.+.|++ +.+-..++..-
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~~ 40 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESEL 40 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 37899999987665554 44556774 55555555544
No 133
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=39.46 E-value=45 Score=21.30 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=16.9
Q ss_pred eEEEEcCCChhHHHHH-----HHHHHccCC
Q 029984 139 EIIVGCQSGKRSMMAA-----TDLLNAGFA 163 (184)
Q Consensus 139 ~ivv~c~~g~rs~~~~-----~~L~~~G~~ 163 (184)
+|++.|.+|..+...+ ..+.+.|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 4899999997544333 455567875
No 134
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=39.31 E-value=86 Score=24.09 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=34.0
Q ss_pred CCCCCeEEEEcC---CChhHHHHHHHHHHccCCCe---eecc---ccHHHHHhCCCCC
Q 029984 134 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGI---TDIA---GGFAAWRQNGLPT 182 (184)
Q Consensus 134 l~~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v---~~l~---GG~~~W~~~g~p~ 182 (184)
+.++++|+++++ +|.....++..|++.|.+-+ .+++ ||.......|.|+
T Consensus 115 ~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v 172 (206)
T PRK13809 115 FTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKL 172 (206)
T ss_pred cCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCE
Confidence 346778999886 68888889999999997532 2344 4444444567765
No 135
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=38.60 E-value=53 Score=27.09 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=26.2
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeee
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 167 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~ 167 (184)
+++.+|++++ +|..-..+++.|++.|..+|+.
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 250 (319)
T PRK04923 216 QGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVA 250 (319)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEE
Confidence 5677888865 7888889999999999988764
No 136
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=38.59 E-value=41 Score=20.63 Aligned_cols=21 Identities=43% Similarity=0.537 Sum_probs=13.8
Q ss_pred eEEEEcCCCh-hHHHHHHHHHH
Q 029984 139 EIIVGCQSGK-RSMMAATDLLN 159 (184)
Q Consensus 139 ~ivv~c~~g~-rs~~~~~~L~~ 159 (184)
.++++|++|. .+..+...|++
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~ 22 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEK 22 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHH
Confidence 3789999984 55555555543
No 137
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=38.23 E-value=59 Score=26.83 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=25.8
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeee
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 167 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~ 167 (184)
+++.+|++++ +|+.-..++..|++.|-++|+.
T Consensus 213 ~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a 247 (314)
T COG0462 213 EGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYA 247 (314)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEE
Confidence 3456777775 6888889999999999988874
No 138
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=38.11 E-value=1.6e+02 Score=23.42 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=52.3
Q ss_pred cCHHHHHHHHhC----C-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChh
Q 029984 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 149 (184)
Q Consensus 75 i~~~~~~~~~~~----~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~r 149 (184)
.+.+++.+++.. | -.||.|++.+|.+...=-|+..|=.+......+..+.+....+...++++ +++++.+|..
T Consensus 135 L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~--~~~IsESGI~ 212 (247)
T PRK13957 135 LTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPN--IVKVGESGIE 212 (247)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCC--cEEEEcCCCC
Confidence 455566666542 3 57899999999874332344333322222223334556667777777754 4566789998
Q ss_pred HHHHHHHHHHccCC
Q 029984 150 SMMAATDLLNAGFA 163 (184)
Q Consensus 150 s~~~~~~L~~~G~~ 163 (184)
+..-+..++.. ++
T Consensus 213 t~~d~~~l~~~-~d 225 (247)
T PRK13957 213 SRSDLDKFRKL-VD 225 (247)
T ss_pred CHHHHHHHHHh-CC
Confidence 87777777765 65
No 139
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=37.87 E-value=89 Score=21.47 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCCCeEEEEcC-CChhHHHHHHHHHHccCCCeeeccc
Q 029984 126 FVEEVSTRFRKHDEIIVGCQ-SGKRSMMAATDLLNAGFAGITDIAG 170 (184)
Q Consensus 126 ~~~~~~~~l~~~~~ivv~c~-~g~rs~~~~~~L~~~G~~~v~~l~G 170 (184)
.++...+.++.+..++|.++ -|+.-..++..+. ..+++++++.|
T Consensus 47 ~l~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~-~~~~~~~vIsG 91 (116)
T TIGR00824 47 KYNAALADLDTEEEVLFLVDIFGGSPYNAAARII-VDKPHMDVIAG 91 (116)
T ss_pred HHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHH-hhcCCEEEEEe
Confidence 34455556666677887777 3444444443332 12346766654
No 140
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=37.52 E-value=53 Score=24.55 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=26.3
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeec
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l 168 (184)
+++.++++++ +|.....++..|++.|..+|+.+
T Consensus 96 ~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~a 131 (181)
T PRK09162 96 KGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSA 131 (181)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 4677888875 67788888999999998877653
No 141
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=37.37 E-value=80 Score=20.86 Aligned_cols=29 Identities=28% Similarity=0.301 Sum_probs=23.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHccCCCe
Q 029984 137 HDEIIVGCQSGKRSMMAATDLLNAGFAGI 165 (184)
Q Consensus 137 ~~~ivv~c~~g~rs~~~~~~L~~~G~~~v 165 (184)
+-+|++-|.+|.-+..+-..|.++|.+.+
T Consensus 21 ~~kivvD~~~G~~~~~~~~ll~~lg~~~~ 49 (104)
T PF02879_consen 21 GLKIVVDCMNGAGSDILPRLLERLGCDVI 49 (104)
T ss_dssp TCEEEEE-TTSTTHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCcEE
Confidence 34789999999999899999999998533
No 142
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=37.06 E-value=63 Score=30.63 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=34.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHH
Q 029984 134 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 175 (184)
Q Consensus 134 l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W 175 (184)
..+++|++|.|.+-..|...+..|.+.|+. ..+|.+...+.
T Consensus 441 ~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~-h~vLnak~~q~ 481 (896)
T PRK13104 441 GVRKQPVLVGTVSIEASEFLSQLLKKENIK-HQVLNAKFHEK 481 (896)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEeecCCCChH
Confidence 468999999999999999999999999996 56677765543
No 143
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=37.04 E-value=52 Score=21.22 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=19.5
Q ss_pred eEEEEcCCChhHH-HHH----HHHHHccCCCeeeccccHHH
Q 029984 139 EIIVGCQSGKRSM-MAA----TDLLNAGFAGITDIAGGFAA 174 (184)
Q Consensus 139 ~ivv~c~~g~rs~-~~~----~~L~~~G~~~v~~l~GG~~~ 174 (184)
.|+++|.+|.-+. .+. ..+.+.|.. +.+-..++..
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~-~~v~~~~~~~ 41 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLE-IPVTNSAIDE 41 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCc-eEEEEcchhh
Confidence 5899999887443 323 445555653 3333344433
No 144
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=37.01 E-value=1e+02 Score=18.96 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCC
Q 029984 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 163 (184)
Q Consensus 126 ~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~ 163 (184)
..+..++.+..+..+.|.+++......+-.++++.||+
T Consensus 15 ~~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~ 52 (69)
T cd03422 15 ATLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYK 52 (69)
T ss_pred HHHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCE
Confidence 45566777888888888888776777888999999996
No 145
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=36.01 E-value=2.1e+02 Score=22.86 Aligned_cols=87 Identities=21% Similarity=0.225 Sum_probs=55.2
Q ss_pred cCHHHHHHHHh----CC-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChh
Q 029984 75 VPVRVAHELLQ----AG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 149 (184)
Q Consensus 75 i~~~~~~~~~~----~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~r 149 (184)
++.++++++.+ -| -+||.|.+.+|.+...--|+.-|=.+......+..+.+....+...++++ ++++..+|..
T Consensus 140 L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~--~~~IsESGI~ 217 (254)
T COG0134 140 LDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKD--VILISESGIS 217 (254)
T ss_pred cCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCC--cEEEecCCCC
Confidence 45555666554 24 57899999999875443455333222112223333445556666667766 4555789999
Q ss_pred HHHHHHHHHHccCC
Q 029984 150 SMMAATDLLNAGFA 163 (184)
Q Consensus 150 s~~~~~~L~~~G~~ 163 (184)
+..-...+...|.+
T Consensus 218 ~~~dv~~l~~~ga~ 231 (254)
T COG0134 218 TPEDVRRLAKAGAD 231 (254)
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999985
No 146
>PRK11595 DNA utilization protein GntX; Provisional
Probab=35.98 E-value=60 Score=25.16 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=27.3
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeec
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l 168 (184)
+++.|+++++ +|.....++..|++.|...|+.+
T Consensus 186 ~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~ 221 (227)
T PRK11595 186 QGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVW 221 (227)
T ss_pred CCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEE
Confidence 4667888876 68888899999999999888764
No 147
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=35.75 E-value=66 Score=28.22 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=26.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCCCeeecccc
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 171 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG 171 (184)
.+.+|||+ ..|.-.-.+|..|.+.|+.++.+++|.
T Consensus 20 ~~~kIvII-GAG~AGLaAA~rLle~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 20 GNAKIVII-GAGIAGLAAATRLLENGFIDVLILEAS 54 (498)
T ss_pred CCceEEEE-CCchHHHHHHHHHHHhCCceEEEEEec
Confidence 45567777 555555667888889999999988864
No 148
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=35.62 E-value=80 Score=27.15 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=30.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHH
Q 029984 137 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 174 (184)
Q Consensus 137 ~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~ 174 (184)
+.+++|+|+....+...+..|...|+. .-.|.|-+..
T Consensus 300 g~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqmsq 336 (476)
T KOG0330|consen 300 GNSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQMSQ 336 (476)
T ss_pred CCcEEEEEeccchHHHHHHHHHhcCcc-eecccchhhH
Confidence 478999999999999999999999996 3346666553
No 149
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=35.19 E-value=67 Score=21.44 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=19.0
Q ss_pred CeEEEEcCCChhHHH-----HHHHHHHccCC
Q 029984 138 DEIIVGCQSGKRSMM-----AATDLLNAGFA 163 (184)
Q Consensus 138 ~~ivv~c~~g~rs~~-----~~~~L~~~G~~ 163 (184)
.+|++.|..|.-+.. +-..|+++|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 368999999875432 33778889995
No 150
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=34.99 E-value=79 Score=27.12 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=30.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 137 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 137 ~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
...++|||++-..+..++..|.+.|+. +..+.|++.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~~-v~~~hg~~~ 277 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGFS-ALALHGDLE 277 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCCc-EEEEeCCCC
Confidence 346899999988999999999999984 777778764
No 151
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=34.98 E-value=58 Score=29.65 Aligned_cols=48 Identities=13% Similarity=0.228 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
..+..+...+..+..++|+|++-.++...+..|.+.|+. +..+.|++.
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~-~~~~h~~~~ 481 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIK-VRYLHSDID 481 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhccee-EEEEECCCC
Confidence 344444444556778999999988999999999999984 666666543
No 152
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=34.95 E-value=56 Score=27.68 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=30.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 137 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 137 ~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
...++|||++...+...+..|...|+. +..+.|++.
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~~-v~~lhg~~~ 290 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGHR-VGLLTGDVA 290 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCCc-EEEecCCCC
Confidence 457899999988888999999999984 777888753
No 153
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=34.91 E-value=59 Score=26.90 Aligned_cols=32 Identities=22% Similarity=0.106 Sum_probs=25.5
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeee
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 167 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~ 167 (184)
+++.+|++++ +|..-..++..|++.|..+|+.
T Consensus 217 ~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 251 (323)
T PRK02458 217 AGKKAILIDDILNTGKTFAEAAKIVEREGATEIYA 251 (323)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEE
Confidence 4677888865 6778888999999999988764
No 154
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=34.88 E-value=1e+02 Score=23.15 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcC---CChhHHHHHHHHHHccCCCee---ecc----ccHHHH-HhCCCCC
Q 029984 134 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA----GGFAAW-RQNGLPT 182 (184)
Q Consensus 134 l~~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~---~l~----GG~~~W-~~~g~p~ 182 (184)
+.++++++++.+ +|.....+...+++.|-.-+. +++ ||.+.. ...|.|+
T Consensus 111 ~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g~~~l~~~~gv~v 170 (187)
T PRK12560 111 IEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNNGRKKLFTQTGINV 170 (187)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccchHHHHhhccCCcE
Confidence 456788999886 677777788899999975322 222 566666 3357765
No 155
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=34.73 E-value=82 Score=25.38 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=20.5
Q ss_pred CCCCCeEEEEcCCCh-hHH--HHHHHHHHccC
Q 029984 134 FRKHDEIIVGCQSGK-RSM--MAATDLLNAGF 162 (184)
Q Consensus 134 l~~~~~ivv~c~~g~-rs~--~~~~~L~~~G~ 162 (184)
..++..++|+|..|. ||. .+|..+...|.
T Consensus 152 ~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~ 183 (285)
T KOG1716|consen 152 REKGGKVLVHCQAGVSRSATLVIAYLMKYEGL 183 (285)
T ss_pred HhCCCeEEEEcCCccchhHHHHHHHHHHHcCC
Confidence 356888999999776 766 35566666565
No 156
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=34.68 E-value=1.2e+02 Score=20.24 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhH-HHHHHHHHHccCC
Q 029984 125 KFVEEVSTRFRKHDEIIVGCQSGKRS-MMAATDLLNAGFA 163 (184)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~rs-~~~~~~L~~~G~~ 163 (184)
+.++.+.+ .++++++..|+..++ ...+..|..+|++
T Consensus 21 e~l~~L~~---~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 21 EALDALRE---RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHH---TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 44444443 468899998877665 6778888999985
No 157
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=34.61 E-value=1.5e+02 Score=20.34 Aligned_cols=44 Identities=7% Similarity=0.078 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCCh---hHHHHHHHHHHccCCCeeec
Q 029984 125 KFVEEVSTRFRKHDEIIVGCQSGK---RSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~---rs~~~~~~L~~~G~~~v~~l 168 (184)
+.+...+....++.++++-++... +-..+...+++.|++++.+.
T Consensus 72 ~~L~~~l~~~~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 72 EELEAEIAQLNKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred HHHHHHHHhhCCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEE
Confidence 444555555566777888887654 34466788899999988754
No 158
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=34.60 E-value=83 Score=27.72 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=29.5
Q ss_pred eEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 139 EIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 139 ~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
.+||+|++...+...+..|...|+. +..+.|++.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~~-~~~lhG~l~ 308 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGFK-VAALHGDLP 308 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCCe-EEEecCCCC
Confidence 4899999999999999999999985 888888854
No 159
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=34.60 E-value=68 Score=27.69 Aligned_cols=43 Identities=26% Similarity=0.232 Sum_probs=27.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHc-----cCCCeeeccccHHHHH
Q 029984 134 FRKHDEIIVGCQSGKRSMMAATDLLNA-----GFAGITDIAGGFAAWR 176 (184)
Q Consensus 134 l~~~~~ivv~c~~g~rs~~~~~~L~~~-----G~~~v~~l~GG~~~W~ 176 (184)
.+.+-..+++|++|..+..++-.|... |-..|-.+.|++.+|.
T Consensus 130 ~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t 177 (442)
T TIGR03372 130 TPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKS 177 (442)
T ss_pred CCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCC
Confidence 343335678899999888777665543 4344556777777663
No 160
>PRK11018 hypothetical protein; Provisional
Probab=34.60 E-value=1.2e+02 Score=19.19 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=29.8
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCC
Q 029984 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 163 (184)
Q Consensus 126 ~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~ 163 (184)
..+..++.++.+..+.|.+++......+-.++++.||+
T Consensus 24 ~~kk~l~~l~~G~~L~V~~d~~~a~~di~~~~~~~G~~ 61 (78)
T PRK11018 24 ATLEALPQLKKGEILEVVSDCPQSINNIPLDARNHGYT 61 (78)
T ss_pred HHHHHHHhCCCCCEEEEEeCCccHHHHHHHHHHHcCCE
Confidence 45556777888888888888776666888999999996
No 161
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=34.27 E-value=74 Score=28.42 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=29.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 137 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 137 ~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
+.+.||||++-..+..++..|...|+. +..|.||+.
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~-~~~~H~~l~ 259 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGIS-ALAYHAGLS 259 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCC-EEEEECCCC
Confidence 567899999988888999999999985 666777754
No 162
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=34.12 E-value=2e+02 Score=25.02 Aligned_cols=46 Identities=17% Similarity=0.323 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCCCeEEEEcC-CChhHHHHHHHHHHc-cCCCeee--ccc
Q 029984 125 KFVEEVSTRFRKHDEIIVGCQ-SGKRSMMAATDLLNA-GFAGITD--IAG 170 (184)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~-~g~rs~~~~~~L~~~-G~~~v~~--l~G 170 (184)
+++.++...+.++..++|.+. .|..+...|..+.+. |++-|.+ +||
T Consensus 202 ~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 202 DELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred HHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEEcccC
Confidence 455556666788888888876 688899999888764 7765543 554
No 163
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=34.12 E-value=64 Score=27.38 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
....++|||++-..+...+..|...|+. +..+.|++.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~g~~~ 280 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGIN-CCYLEGEMV 280 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 3567899999988899999999999984 777888763
No 164
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=34.07 E-value=64 Score=21.91 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=18.2
Q ss_pred CeEEEEcCCChhHHHHHHHH----HHccCC
Q 029984 138 DEIIVGCQSGKRSMMAATDL----LNAGFA 163 (184)
Q Consensus 138 ~~ivv~c~~g~rs~~~~~~L----~~~G~~ 163 (184)
+.|++.|..|..+...+..+ .+.|++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 47999999998777666333 445653
No 165
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=33.97 E-value=75 Score=31.13 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=30.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 137 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 137 ~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
+...||||.+-..+..++..|...|+. +..|.||+.
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gik-a~~YHAGLs 715 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHK-AAFYHGSMD 715 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCC-eeeeeCCCC
Confidence 456799999988888999999999995 777889864
No 166
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=33.94 E-value=62 Score=28.48 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=28.4
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeecc
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA 169 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l~ 169 (184)
+++.|+++++ +|.....++..|++.|.++|+++.
T Consensus 357 ~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v 393 (501)
T PRK09246 357 KGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFAS 393 (501)
T ss_pred cCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEE
Confidence 4688999987 588888999999999998887653
No 167
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=33.87 E-value=1.5e+02 Score=21.91 Aligned_cols=50 Identities=24% Similarity=0.166 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCCh--hHHHHHHHHH---HccCCCeeeccccHHHH
Q 029984 125 KFVEEVSTRFRKHDEIIVGCQSGK--RSMMAATDLL---NAGFAGITDIAGGFAAW 175 (184)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~--rs~~~~~~L~---~~G~~~v~~l~GG~~~W 175 (184)
++-+.+...++++..+|+.+-.|. .|...+..|. ..| .++..+-||-.+.
T Consensus 55 ~E~~~il~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G-~~i~f~IGG~~Gl 109 (155)
T COG1576 55 KEGEAILAAIPKGSYVVLLDIRGKALSSEEFADFLERLRDDG-RDISFLIGGADGL 109 (155)
T ss_pred HHHHHHHHhcCCCCeEEEEecCCCcCChHHHHHHHHHHHhcC-CeEEEEEeCcccC
Confidence 344455666777776666655554 5777777666 347 6788888886543
No 168
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=33.85 E-value=1e+02 Score=22.69 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=34.0
Q ss_pred CCCCCeEEEEcC---CChhHHHHHHHHHHccCCCe---eecc----ccHHHHHhC-CCCCC
Q 029984 134 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGI---TDIA----GGFAAWRQN-GLPTE 183 (184)
Q Consensus 134 l~~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v---~~l~----GG~~~W~~~-g~p~~ 183 (184)
+.++++++++++ +|.....+...|++.|.+-+ .+++ ||...+.+. |.|+.
T Consensus 105 ~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~~~~~~l~~~~gv~~~ 165 (173)
T TIGR00336 105 LLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKEYGLPVI 165 (173)
T ss_pred CCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCchhHHHHHHHhcCCeEE
Confidence 456788999886 67777788899999997532 1233 456666655 77763
No 169
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=33.73 E-value=52 Score=29.60 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
+++..||||++-..+...+..|.+.|+. +..+.||+.
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~-v~~~Ha~l~ 271 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGIS-AAAYHAGLD 271 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 4567899999988899999999999984 777888764
No 170
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=33.60 E-value=9.8 Score=24.95 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHh
Q 029984 125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 177 (184)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~ 177 (184)
+.+-...+.-.+.+||-+|+++....... ..++-.|-.+..++-|-|..++.
T Consensus 4 ~eII~~I~~skKkTPVKvYv~G~l~~~~~-~~~~~fg~~~~~vvfGd~~~i~~ 55 (83)
T PF08503_consen 4 EEIIRYIKNSKKKTPVKVYVKGDLAGIDF-EDVKVFGSGNFGVVFGDWDEIKP 55 (83)
T ss_dssp HHHHHHHHHCTTB-EEEEEEEESCTC----TTSEEEEESSEEEEEEEHHHHHH
T ss_pred HHHHHHHHhCCCCCCEEEEEeeeecCCCh-hheEEEeCCCcEEEEecHHHHHH
Confidence 45566666667889999999865333222 34444565667788888887753
No 171
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=33.46 E-value=53 Score=29.34 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
....++|||++-..+..++..|...|+. +..+.|++.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~~-v~~lhg~l~ 292 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGYR-VGVLSGDVP 292 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCCC-EEEEeCCCC
Confidence 4567899999988899999999999984 777888743
No 172
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=33.17 E-value=2.4e+02 Score=22.37 Aligned_cols=88 Identities=20% Similarity=0.182 Sum_probs=47.1
Q ss_pred CHHHHHHHHh----CC-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhH
Q 029984 76 PVRVAHELLQ----AG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150 (184)
Q Consensus 76 ~~~~~~~~~~----~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs 150 (184)
+.+++.++++ -+ ..++|+.+.+|.....=-|+-.|=...........+.+...++...++++ +++++-+|..+
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~--~~vIaegGI~t 222 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPSD--RLVVSESGIFT 222 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCCC--CEEEEEeCCCC
Confidence 3445555543 23 56889999887653211133222111000011122344555555555433 35667788887
Q ss_pred HHHHHHHHHccCCCe
Q 029984 151 MMAATDLLNAGFAGI 165 (184)
Q Consensus 151 ~~~~~~L~~~G~~~v 165 (184)
..-+..+.+.|++-|
T Consensus 223 ~ed~~~~~~~Gad~v 237 (260)
T PRK00278 223 PEDLKRLAKAGADAV 237 (260)
T ss_pred HHHHHHHHHcCCCEE
Confidence 788888889998644
No 173
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=33.12 E-value=66 Score=28.12 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=28.8
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeeccc
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIAG 170 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l~G 170 (184)
++++|+++++ +|..+...++.|++.|.+.|+++-.
T Consensus 347 ~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~ 384 (471)
T PRK06781 347 EGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIA 384 (471)
T ss_pred CCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEEC
Confidence 4788999987 5888889999999999988876543
No 174
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=33.03 E-value=81 Score=27.17 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=29.2
Q ss_pred HHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCC
Q 029984 130 VSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 163 (184)
Q Consensus 130 ~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~ 163 (184)
.+..+.+++||++...++..+......|+..|++
T Consensus 105 ~LD~~~~d~Pv~l~~~~~H~~~~Ns~al~~~gi~ 138 (479)
T cd01300 105 ELDAVSPDRPVLLLRRDGHSAWVNSAALRLAGIT 138 (479)
T ss_pred HHhcccCCCcEEEEccCchHHHHHHHHHHHcCCC
Confidence 3455678999999999999999999999999985
No 175
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=33.00 E-value=1.4e+02 Score=20.48 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCCCeEEEEcCC-ChhHHHHHHHHHHccCCCeeeccc
Q 029984 125 KFVEEVSTRFRKHDEIIVGCQS-GKRSMMAATDLLNAGFAGITDIAG 170 (184)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~-g~rs~~~~~~L~~~G~~~v~~l~G 170 (184)
+.+......++.++.+++.++- |+.-...+..+.... .+++++.|
T Consensus 45 ~~i~~~i~~~~~~~~viil~Dl~GGSp~n~~~~~~~~~-~~~~visG 90 (122)
T cd00006 45 EKIKAALAELDSGEGVLILTDLFGGSPNNAAARLSMEH-PPVEVIAG 90 (122)
T ss_pred HHHHHHHHHhCCCCcEEEEEeCCCCCHHHHHHHHHhcC-CCEEEEEc
Confidence 3455555566666678888884 544445554444432 45665543
No 176
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=32.67 E-value=67 Score=26.50 Aligned_cols=32 Identities=22% Similarity=0.145 Sum_probs=25.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeee
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 167 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~ 167 (184)
+++.++++++ +|..-..++..|++.|.+.|+.
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 250 (320)
T PRK02269 216 KGKKCILIDDMIDTAGTICHAADALAEAGATEVYA 250 (320)
T ss_pred CCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEE
Confidence 4677888875 6888889999999999987763
No 177
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=32.65 E-value=78 Score=28.94 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
..+.++...+.++..++|+|++-.++...+..|.+.|+. +..+.|++.
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~-~~~lh~~~~ 477 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIK-VRYLHSEID 477 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccc-eeeeeCCCC
Confidence 344444444566788999999988999999999999984 666666543
No 178
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=32.35 E-value=51 Score=22.57 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=21.4
Q ss_pred EEEcCCChhHHHHHHHHHHccCCCeeecc
Q 029984 141 IVGCQSGKRSMMAATDLLNAGFAGITDIA 169 (184)
Q Consensus 141 vv~c~~g~rs~~~~~~L~~~G~~~v~~l~ 169 (184)
|++.+.|.-+.++.+.++++|++-|.++.
T Consensus 5 vLIanrGeia~r~~ra~r~~Gi~tv~v~s 33 (110)
T PF00289_consen 5 VLIANRGEIAVRIIRALRELGIETVAVNS 33 (110)
T ss_dssp EEESS-HHHHHHHHHHHHHTTSEEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHhCCcceeccC
Confidence 44457787888999999999997655543
No 179
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=32.22 E-value=48 Score=29.89 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
.+..-||||.+-..+...+..|...|+. +..|.||+.
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~-a~~YHaGl~ 265 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGIS-AGAYHAGLS 265 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCc-eEEecCCCC
Confidence 4566899999998899999999999985 777888875
No 180
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=32.02 E-value=70 Score=24.93 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=26.2
Q ss_pred CeEEEEcC---CChhHHHHHHHHHHccCCCeeec
Q 029984 138 DEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 138 ~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l 168 (184)
++|+++++ +|.....++..|++.|..+|.++
T Consensus 185 ~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~ 218 (225)
T COG1040 185 KNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVL 218 (225)
T ss_pred CeEEEEecccccHHHHHHHHHHHHHcCCceEEEE
Confidence 56888876 68888899999999999888765
No 181
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=31.85 E-value=1.4e+02 Score=22.31 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcC---CChhHHHHHHHHHHccCCCee---ecc---ccHHHHHhCCCCCC
Q 029984 134 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT---DIA---GGFAAWRQNGLPTE 183 (184)
Q Consensus 134 l~~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~---~l~---GG~~~W~~~g~p~~ 183 (184)
+.++++++++.+ +|.....+...+++.|.+-+. +++ ||-+.-...|+|+.
T Consensus 104 ~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~~~~~~~l~~~g~~v~ 162 (176)
T PRK13812 104 LDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDREEGARENLADHDVELE 162 (176)
T ss_pred CCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECCcchHHHHHhcCCcEE
Confidence 456888999886 687888889999999975321 222 33333344677753
No 182
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=31.27 E-value=1.3e+02 Score=18.45 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=29.8
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCC
Q 029984 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 163 (184)
Q Consensus 126 ~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~ 163 (184)
..+..+..+..+..+.|.++.......+..++.+.||+
T Consensus 15 ~~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~ 52 (69)
T cd03420 15 KLKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNT 52 (69)
T ss_pred HHHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCE
Confidence 45566777777888888888776777888999999996
No 183
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=31.25 E-value=1.2e+02 Score=28.32 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=32.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccH
Q 029984 134 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 172 (184)
Q Consensus 134 l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~ 172 (184)
..+++|++|+|++-..+...+..|.+.|+. ...|.+.-
T Consensus 402 ~~~grpvLV~t~si~~se~ls~~L~~~gi~-~~~Lna~q 439 (745)
T TIGR00963 402 HAKGQPVLVGTTSVEKSELLSNLLKERGIP-HNVLNAKN 439 (745)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEEeeCCh
Confidence 367899999999998999999999999996 55676663
No 184
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=31.18 E-value=1.2e+02 Score=28.47 Aligned_cols=39 Identities=21% Similarity=0.124 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHH
Q 029984 135 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 174 (184)
Q Consensus 135 ~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~ 174 (184)
.+.+|++|.|++-..|...+..|.+.|+. ...|.+...+
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~gi~-~~~Lna~~~~ 476 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEAGIP-HAVLNAKNHA 476 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHCCCC-eeEecCCcHH
Confidence 57899999999999999999999999995 5677776553
No 185
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=30.64 E-value=1e+02 Score=25.61 Aligned_cols=40 Identities=15% Similarity=-0.012 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCC-CeeeccccHHHH
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFA-GITDIAGGFAAW 175 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~-~v~~l~GG~~~W 175 (184)
++.+++|+|++-..+...+..|++.|+. ++..+.|.....
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~ 311 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKK 311 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHH
Confidence 4567899999988999999999987652 455666765443
No 186
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=30.52 E-value=1.2e+02 Score=24.96 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=20.9
Q ss_pred CCChh--HHHHHHHHHHccCCCeeeccccHHHHHhC
Q 029984 145 QSGKR--SMMAATDLLNAGFAGITDIAGGFAAWRQN 178 (184)
Q Consensus 145 ~~g~r--s~~~~~~L~~~G~~~v~~l~GG~~~W~~~ 178 (184)
..|.+ +....+.|++.|++ +..+.=|-.+|-..
T Consensus 123 avGK~tTal~L~~~l~~~G~~-a~fvaTGQTGimia 157 (301)
T PF07755_consen 123 AVGKMTTALELRRALRERGIN-AGFVATGQTGIMIA 157 (301)
T ss_dssp SSSHHHHHHHHHHHHHHTT---EEEEE-SHHHHHCH
T ss_pred cccHHHHHHHHHHHHHHcCCC-ceEEecCCceEEEe
Confidence 34554 44567899999995 77777777777553
No 187
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=30.52 E-value=56 Score=27.90 Aligned_cols=34 Identities=15% Similarity=0.343 Sum_probs=28.5
Q ss_pred EEEEcCCChhHHHHHHHHHHccCCCeeeccccHHH
Q 029984 140 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 174 (184)
Q Consensus 140 ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~ 174 (184)
-|++|..-..+.+.+..|.+.||+ |..|.|.+..
T Consensus 333 siIFc~tk~ta~~l~~~m~~~Gh~-V~~l~G~l~~ 366 (477)
T KOG0332|consen 333 SIIFCHTKATAMWLYEEMRAEGHQ-VSLLHGDLTV 366 (477)
T ss_pred eEEEEeehhhHHHHHHHHHhcCce-eEEeeccchh
Confidence 467789888888999999999995 9999987654
No 188
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.47 E-value=67 Score=20.40 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=14.5
Q ss_pred EEEEcCCCh-hHHHHH----HHHHHccC
Q 029984 140 IIVGCQSGK-RSMMAA----TDLLNAGF 162 (184)
Q Consensus 140 ivv~c~~g~-rs~~~~----~~L~~~G~ 162 (184)
++++|.+|. .|.... ..|.+.|+
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~~i 29 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKELGI 29 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 789999887 344444 34445565
No 189
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=30.25 E-value=80 Score=21.99 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=27.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHH
Q 029984 138 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 175 (184)
Q Consensus 138 ~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W 175 (184)
++|++ +..|.-...++..|...|+.++.++|...-.+
T Consensus 3 ~~v~i-iG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~ 39 (135)
T PF00899_consen 3 KRVLI-IGAGGVGSEVAKNLARSGVGKITLVDDDIVEP 39 (135)
T ss_dssp -EEEE-ESTSHHHHHHHHHHHHHTTSEEEEEESSBB-G
T ss_pred CEEEE-ECcCHHHHHHHHHHHHhCCCceeecCCcceee
Confidence 34544 47777777999999999999898888775443
No 190
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=29.34 E-value=74 Score=27.36 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=29.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 137 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 137 ~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
...++|||++-..+..++..|...|+. +..+.|++.
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~-~~~lhg~~~ 280 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIR-SAAIHGNKS 280 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCC-EEEEECCCC
Confidence 457899999988888999999999984 677777754
No 191
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.34 E-value=46 Score=25.78 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=17.8
Q ss_pred HHHHHccCCCeee-ccccHHHHHhC
Q 029984 155 TDLLNAGFAGITD-IAGGFAAWRQN 178 (184)
Q Consensus 155 ~~L~~~G~~~v~~-l~GG~~~W~~~ 178 (184)
..|..+||.||.+ ...|..+|.+.
T Consensus 112 ~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 112 RNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHcCCCceEEEECCcccCCCCC
Confidence 4478899998876 55678888764
No 192
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=29.05 E-value=97 Score=24.87 Aligned_cols=33 Identities=27% Similarity=0.143 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCCCeeecc
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 169 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~ 169 (184)
++++++|+ ..|..+..++..|.+.|..+++++.
T Consensus 124 ~~k~vlvl-GaGGaarai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 124 AGFRGLVI-GAGGTSRAAVYALASLGVTDITVIN 156 (282)
T ss_pred CCceEEEE-cCcHHHHHHHHHHHHcCCCeEEEEe
Confidence 35667776 5566777788889999998888765
No 193
>COG1204 Superfamily II helicase [General function prediction only]
Probab=28.98 E-value=2.1e+02 Score=26.78 Aligned_cols=87 Identities=16% Similarity=-0.039 Sum_probs=56.2
Q ss_pred cccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHH
Q 029984 73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 152 (184)
Q Consensus 73 ~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~ 152 (184)
+.-..+++..+++.+.+.-|.|+-..+......+++-..-..........+...+......+..+..++++|++...+..
T Consensus 189 TlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~ 268 (766)
T COG1204 189 TLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEK 268 (766)
T ss_pred ecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHH
Confidence 34466888888887766778898877776666666544321110001112234445555567778889999999888888
Q ss_pred HHHHHHH
Q 029984 153 AATDLLN 159 (184)
Q Consensus 153 ~~~~L~~ 159 (184)
.+..|..
T Consensus 269 ~A~~l~~ 275 (766)
T COG1204 269 TAKKLRI 275 (766)
T ss_pred HHHHHHH
Confidence 8877773
No 194
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=28.83 E-value=1.2e+02 Score=22.13 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeecccc
Q 029984 125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 171 (184)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG 171 (184)
.++......+.++-.++++.........+...|.+.||....+-..|
T Consensus 121 ~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 121 RFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERG 167 (179)
T ss_pred HHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEee
Confidence 34555555566666666554443346778899999999744444444
No 195
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.23 E-value=95 Score=25.06 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=25.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeee
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 167 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~ 167 (184)
+++.++++++ +|.....++..|++.|-.+|+.
T Consensus 203 ~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~ 237 (285)
T PRK00934 203 KGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYV 237 (285)
T ss_pred CCCEEEEEcCccccHHHHHHHHHHHHHCCCCEEEE
Confidence 5678888876 6778888999999999877654
No 196
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=28.14 E-value=86 Score=19.47 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=21.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHH
Q 029984 134 FRKHDEIIVGCQSGKRSMMAATDLLN 159 (184)
Q Consensus 134 l~~~~~ivv~c~~g~rs~~~~~~L~~ 159 (184)
+..+..|++.|++...+......+++
T Consensus 44 IAgdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 44 IAGDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp EEESSEEEEEESTTSHHHHHHHHHHT
T ss_pred EeCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 35678999999999888888877764
No 197
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=28.11 E-value=82 Score=27.31 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=27.4
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeec
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l 168 (184)
++++|+++++ +|.....++..|++.|.+.|.+.
T Consensus 333 ~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~ 368 (442)
T PRK08341 333 NGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVR 368 (442)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEE
Confidence 5788999987 57788899999999999877653
No 198
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=28.08 E-value=98 Score=26.35 Aligned_cols=46 Identities=15% Similarity=0.072 Sum_probs=30.0
Q ss_pred HhcCCCCCeEEEEcCCChhHHHHHHHHHHc--cCCCeeeccccHHHHH
Q 029984 131 STRFRKHDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 176 (184)
Q Consensus 131 ~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~--G~~~v~~l~GG~~~W~ 176 (184)
.+..+....-|++|++|..+..++-.+... |-+++..++|++.+|.
T Consensus 96 ~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 143 (433)
T PRK08117 96 AEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRT 143 (433)
T ss_pred HHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcC
Confidence 333434444678899999888777666443 5455666778777764
No 199
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=27.76 E-value=83 Score=27.59 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=27.6
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeec
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l 168 (184)
+++.|+++++ +|..+..+++.|++.|.+.|++.
T Consensus 347 ~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~ 382 (475)
T PRK07631 347 EGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVR 382 (475)
T ss_pred CCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 5788999987 47788889999999999887764
No 200
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.73 E-value=94 Score=25.81 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=26.0
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeee
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 167 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~ 167 (184)
+++.++++++ +|.....++..|++.|-+.|+.
T Consensus 217 ~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~ 251 (332)
T PRK00553 217 KNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCV 251 (332)
T ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEE
Confidence 4677888875 6888888999999999887764
No 201
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=27.68 E-value=1.8e+02 Score=21.89 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=33.6
Q ss_pred cCCCCCeEEEEcC---CChhHHHHHHHHHHccCCCe---eecc---ccHHHHHhCCCCC
Q 029984 133 RFRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGI---TDIA---GGFAAWRQNGLPT 182 (184)
Q Consensus 133 ~l~~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v---~~l~---GG~~~W~~~g~p~ 182 (184)
.+.++++|+++++ +|.....+...+++.|.+-+ .+++ ||-+...+.|.|+
T Consensus 118 ~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~g~~~~l~~~gi~~ 176 (187)
T PRK13810 118 DLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREEGAEENLKEADVEL 176 (187)
T ss_pred cCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCcChHHHHHHcCCcE
Confidence 3457788999986 67777788899999997522 1233 4444445567765
No 202
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=27.59 E-value=92 Score=19.88 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=15.6
Q ss_pred eEEEEcCCChhHH-HHH----HHHHHccC
Q 029984 139 EIIVGCQSGKRSM-MAA----TDLLNAGF 162 (184)
Q Consensus 139 ~ivv~c~~g~rs~-~~~----~~L~~~G~ 162 (184)
.++++|.+|..+. ... ..+.+.++
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i 30 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGI 30 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 5899999988433 344 44455666
No 203
>PRK06148 hypothetical protein; Provisional
Probab=27.47 E-value=97 Score=29.88 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=31.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHc--cCCCeeeccccHHHHH
Q 029984 134 FRKHDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 176 (184)
Q Consensus 134 l~~~~~ivv~c~~g~rs~~~~~~L~~~--G~~~v~~l~GG~~~W~ 176 (184)
++.+-..+++|++|..+..++-.|... |-++|-.+.||+.+|.
T Consensus 676 ~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t 720 (1013)
T PRK06148 676 LPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTT 720 (1013)
T ss_pred CCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCC
Confidence 444334688999999988888766654 5556767888888775
No 204
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=27.37 E-value=93 Score=27.46 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=27.6
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeec
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l 168 (184)
++++|+++++ +|.....++..|++.|.+.|++.
T Consensus 376 ~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~ 411 (500)
T PRK07349 376 AGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMR 411 (500)
T ss_pred CCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEE
Confidence 5788999987 58888899999999998776653
No 205
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=27.34 E-value=1.4e+02 Score=28.06 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHH
Q 029984 135 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 174 (184)
Q Consensus 135 ~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~ 174 (184)
.+.++++|+|++-..+...+..|.+.|+. +..+.|....
T Consensus 426 ~~~~pvLIf~~t~~~se~l~~~L~~~gi~-~~~L~~~~~~ 464 (790)
T PRK09200 426 ETGRPVLIGTGSIEQSETFSKLLDEAGIP-HNLLNAKNAA 464 (790)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCC-EEEecCCccH
Confidence 46789999999988999999999999995 6678777443
No 206
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=26.91 E-value=1.8e+02 Score=22.32 Aligned_cols=44 Identities=7% Similarity=0.006 Sum_probs=26.1
Q ss_pred HHHHHHHhcC---CCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 125 KFVEEVSTRF---RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 125 ~~~~~~~~~l---~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
..+......+ +..+-+++-|..|. -+..|.+.|++ |..++-.-.
T Consensus 21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~----da~~LA~~G~~-V~gvD~S~~ 67 (213)
T TIGR03840 21 PLLVKHWPALGLPAGARVFVPLCGKSL----DLAWLAEQGHR-VLGVELSEI 67 (213)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCchh----HHHHHHhCCCe-EEEEeCCHH
Confidence 3444444443 33466677788773 34556678995 776665433
No 207
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=26.90 E-value=1.2e+02 Score=23.57 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCC--Ceeecc
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFA--GITDIA 169 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~--~v~~l~ 169 (184)
++++++|+ ..|.-+.-++..|...|.+ ++++++
T Consensus 24 ~~~rvlvl-GAGgAg~aiA~~L~~~G~~~~~i~ivd 58 (226)
T cd05311 24 EEVKIVIN-GAGAAGIAIARLLLAAGAKPENIVVVD 58 (226)
T ss_pred cCCEEEEE-CchHHHHHHHHHHHHcCcCcceEEEEe
Confidence 35567666 5566777788889999998 888765
No 208
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=26.80 E-value=1.6e+02 Score=18.01 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCC
Q 029984 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 163 (184)
Q Consensus 126 ~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~ 163 (184)
..+..+..++.+..+.|..++......+..++++.||+
T Consensus 15 ~~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~ 52 (69)
T cd03423 15 MLHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHE 52 (69)
T ss_pred HHHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCE
Confidence 45566777877777777777666667888999999996
No 209
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=26.77 E-value=91 Score=23.47 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=13.5
Q ss_pred CCCCeEEEEcCCCh-hHHH
Q 029984 135 RKHDEIIVGCQSGK-RSMM 152 (184)
Q Consensus 135 ~~~~~ivv~c~~g~-rs~~ 152 (184)
..+.|++|+|..|. |+..
T Consensus 168 ~~~~pivVhc~~G~gRsg~ 186 (235)
T PF00102_consen 168 DPNGPIVVHCSDGVGRSGT 186 (235)
T ss_dssp TTSSEEEEESSSSSHHHHH
T ss_pred CCccceEeecccccccccc
Confidence 45689999998765 6654
No 210
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=26.61 E-value=1.5e+02 Score=17.71 Aligned_cols=38 Identities=5% Similarity=-0.057 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCC
Q 029984 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 163 (184)
Q Consensus 126 ~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~ 163 (184)
.+...+..++.+..+.+..+....-..+..++.+.||+
T Consensus 15 ~~~~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~ 52 (69)
T cd00291 15 KTKKALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHE 52 (69)
T ss_pred HHHHHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCE
Confidence 34555666777888887777766666788899999996
No 211
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=26.39 E-value=1e+02 Score=26.98 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=27.1
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeec
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l 168 (184)
+++.|+++++ +|.....++..|++.|-+.|++.
T Consensus 352 ~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~ 387 (469)
T PRK05793 352 EGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFR 387 (469)
T ss_pred CCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEE
Confidence 5688999987 47778889999999999887754
No 212
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=26.38 E-value=77 Score=23.31 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCCCeeecc
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 169 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~ 169 (184)
++++|+|+ .+|..+..++..|.+.| ++|.++.
T Consensus 166 ~~k~V~VV-G~G~SA~d~a~~l~~~g-~~V~~~~ 197 (203)
T PF13738_consen 166 KGKRVVVV-GGGNSAVDIAYALAKAG-KSVTLVT 197 (203)
T ss_dssp TTSEEEEE---SHHHHHHHHHHTTTC-SEEEEEE
T ss_pred CCCcEEEE-cChHHHHHHHHHHHhhC-CEEEEEe
Confidence 35777777 77888889999999999 6687653
No 213
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=26.36 E-value=1.1e+02 Score=29.24 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHH
Q 029984 134 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 175 (184)
Q Consensus 134 l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W 175 (184)
..+++||+|.|.+-..+...+..|...|+. ..+|.+.....
T Consensus 446 ~~~GrpVLV~t~sv~~se~ls~~L~~~gi~-~~vLnak~~~~ 486 (908)
T PRK13107 446 RERGQPVLVGTVSIEQSELLARLMVKEKIP-HEVLNAKFHER 486 (908)
T ss_pred HHcCCCEEEEeCcHHHHHHHHHHHHHCCCC-eEeccCcccHH
Confidence 367899999999999999999999999995 55677665443
No 214
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=26.31 E-value=1.9e+02 Score=21.85 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=34.0
Q ss_pred CCCCCeEEEEcC---CChhHHHHHHHHHHccCCCe---eecc----ccHHHHHhCCCCC
Q 029984 134 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGI---TDIA----GGFAAWRQNGLPT 182 (184)
Q Consensus 134 l~~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v---~~l~----GG~~~W~~~g~p~ 182 (184)
+.++++++++.+ +|.....+...+++.|.+-+ .+++ ||.....+.|.|+
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~~~~g~~~l~~~gvpv 172 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKSFQNGRQELVELGYRV 172 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEecCccHHHHHHhcCCcE
Confidence 467888999986 67778788899999997522 1232 5555555667775
No 215
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=26.22 E-value=1.6e+02 Score=27.49 Aligned_cols=39 Identities=18% Similarity=0.099 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHH
Q 029984 135 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 174 (184)
Q Consensus 135 ~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~ 174 (184)
.+.++++|+|++-..+......|.+.|+. ...|.|....
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~gi~-~~~L~a~~~~ 460 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLREGIP-HNLLNAQNAA 460 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHCCCC-EEEecCCChH
Confidence 56789999999988899999999999995 5567776654
No 216
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=26.12 E-value=1.1e+02 Score=22.45 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=31.3
Q ss_pred HHHHHhcCCCCCeEEEEcCCCh--hHHHHHHHHHH---ccCCCeeeccccHHHH
Q 029984 127 VEEVSTRFRKHDEIIVGCQSGK--RSMMAATDLLN---AGFAGITDIAGGFAAW 175 (184)
Q Consensus 127 ~~~~~~~l~~~~~ivv~c~~g~--rs~~~~~~L~~---~G~~~v~~l~GG~~~W 175 (184)
-+.++..++ +..+|+.+..|. .|...+..|.+ .| .++..+-||-.++
T Consensus 56 ~~~il~~~~-~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g-~~i~FvIGGa~G~ 107 (153)
T TIGR00246 56 GDRILAAIG-KAHVVTLDIPGKPWTTPQLADTLEKWKTDG-RDVTLLIGGPEGL 107 (153)
T ss_pred HHHHHHhCC-CCeEEEEcCCCCcCCHHHHHHHHHHHhccC-CeEEEEEcCCCcC
Confidence 344556666 456677766665 58888888874 45 4688888886554
No 217
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=25.89 E-value=95 Score=26.89 Aligned_cols=33 Identities=24% Similarity=0.115 Sum_probs=27.1
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeec
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l 168 (184)
+++.|+++++ +|.....++..|++.|.+.|++.
T Consensus 339 ~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~ 374 (445)
T PRK08525 339 EGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLR 374 (445)
T ss_pred CCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEE
Confidence 4778999987 57788889999999999887753
No 218
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=25.51 E-value=1.1e+02 Score=18.99 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=15.9
Q ss_pred eEEEEcCCChh-HHHHHHHHHHc
Q 029984 139 EIIVGCQSGKR-SMMAATDLLNA 160 (184)
Q Consensus 139 ~ivv~c~~g~r-s~~~~~~L~~~ 160 (184)
.++++|++|.. +......|++.
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~ 24 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKL 24 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHH
Confidence 58999999875 44566777664
No 219
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=25.51 E-value=1.5e+02 Score=25.48 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=27.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCCCeeecccc
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 171 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG 171 (184)
+++.++|+ +-|..+..++..|...|+.+|++..--
T Consensus 177 ~~~~vlvI-GAGem~~lva~~L~~~g~~~i~IaNRT 211 (414)
T COG0373 177 KDKKVLVI-GAGEMGELVAKHLAEKGVKKITIANRT 211 (414)
T ss_pred ccCeEEEE-cccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 46667777 667788899999999999888876543
No 220
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=25.47 E-value=46 Score=26.43 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=36.6
Q ss_pred HHHHHHHHhcC-CCCCeEEEEcCCChhHHHHHHHHHHccCCCeeecc
Q 029984 124 LKFVEEVSTRF-RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 169 (184)
Q Consensus 124 ~~~~~~~~~~l-~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~ 169 (184)
.+.+......| .++..+++|+..=.+..+....|++.||.++..++
T Consensus 125 w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 125 WEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp GGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEEE
Confidence 35677777777 56778999988878889999999999998766543
No 221
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=25.38 E-value=1.5e+02 Score=19.00 Aligned_cols=28 Identities=25% Similarity=0.194 Sum_probs=17.0
Q ss_pred CCeEEEEcCCC--hhHHHHHHHHHHccCCC
Q 029984 137 HDEIIVGCQSG--KRSMMAATDLLNAGFAG 164 (184)
Q Consensus 137 ~~~ivv~c~~g--~rs~~~~~~L~~~G~~~ 164 (184)
+-+|-|+=.++ ..+..++..|+..||..
T Consensus 3 ~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v 32 (90)
T PF13399_consen 3 DVRVEVLNGTGVSGLAARVADALRNRGFTV 32 (90)
T ss_pred ceEEEEEECcCCcCHHHHHHHHHHHCCCce
Confidence 33455553333 35667778888888753
No 222
>PLN02541 uracil phosphoribosyltransferase
Probab=25.09 E-value=1.5e+02 Score=23.51 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=24.6
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHccCC--Ceee
Q 029984 135 RKHDEIIVGCQ---SGKRSMMAATDLLNAGFA--GITD 167 (184)
Q Consensus 135 ~~~~~ivv~c~---~g~rs~~~~~~L~~~G~~--~v~~ 167 (184)
+.++.|++++. +|..+..+...|++.|.+ ++.+
T Consensus 155 ~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~ 192 (244)
T PLN02541 155 PEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRV 192 (244)
T ss_pred CCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEE
Confidence 33456888775 688888889999999986 5543
No 223
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=25.05 E-value=1.2e+02 Score=22.23 Aligned_cols=31 Identities=6% Similarity=0.090 Sum_probs=24.7
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHccCCCe
Q 029984 135 RKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGI 165 (184)
Q Consensus 135 ~~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v 165 (184)
.+++.|+++++ +|.....+...|++.|.+.+
T Consensus 107 ~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v 140 (169)
T TIGR01090 107 KPGQRVLIVDDLLATGGTAEATDELIRKLGGEVV 140 (169)
T ss_pred CCcCEEEEEeccccchHHHHHHHHHHHHcCCEEE
Confidence 36778888876 67778888999999998644
No 224
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=24.95 E-value=1.2e+02 Score=24.75 Aligned_cols=34 Identities=18% Similarity=0.041 Sum_probs=26.0
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeecc
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA 169 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l~ 169 (184)
+++.+|++++ +|.....++..|++.|..+++.+.
T Consensus 201 ~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~ 237 (302)
T PLN02369 201 KGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACA 237 (302)
T ss_pred CCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEE
Confidence 4667888875 677777888999999998776543
No 225
>PRK06917 hypothetical protein; Provisional
Probab=24.80 E-value=1.4e+02 Score=25.73 Aligned_cols=48 Identities=13% Similarity=-0.015 Sum_probs=30.0
Q ss_pred HHHhcCCCCCeEEEEcCCChhHHHHHHHHHH-----ccC---CCeeeccccHHHHH
Q 029984 129 EVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-----AGF---AGITDIAGGFAAWR 176 (184)
Q Consensus 129 ~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~-----~G~---~~v~~l~GG~~~W~ 176 (184)
.+.+.++....-+++|++|..+..++-.|.. .|+ ..|-.+.||+.+|.
T Consensus 82 ~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t 137 (447)
T PRK06917 82 KLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGIT 137 (447)
T ss_pred HHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCcc
Confidence 3333344433468889999988877766653 243 23555778877764
No 226
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=24.52 E-value=1e+02 Score=26.98 Aligned_cols=33 Identities=9% Similarity=0.041 Sum_probs=26.7
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeec
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l 168 (184)
+++.|+++++ +|.....++..|++.|.+.|++.
T Consensus 355 ~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~r 390 (474)
T PRK06388 355 SGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVR 390 (474)
T ss_pred cCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEE
Confidence 4678999987 47778889999999998877653
No 227
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=24.50 E-value=2.9e+02 Score=24.07 Aligned_cols=87 Identities=18% Similarity=0.136 Sum_probs=50.6
Q ss_pred cCHHHHHHHHhC----C-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChh
Q 029984 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 149 (184)
Q Consensus 75 i~~~~~~~~~~~----~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~r 149 (184)
++.+++.++++. + -.||.|++.+|.+..-=-|+.-|=.+......+..+.+....+...++++ +++++.+|..
T Consensus 143 L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~--~~~vseSGI~ 220 (454)
T PRK09427 143 LDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIPAD--VIVISESGIY 220 (454)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCC--cEEEEeCCCC
Confidence 355556655542 3 57899999999874222233222222122223334556666677777754 5666789988
Q ss_pred HHHHHHHHHHccCCC
Q 029984 150 SMMAATDLLNAGFAG 164 (184)
Q Consensus 150 s~~~~~~L~~~G~~~ 164 (184)
+..-...|+. |++-
T Consensus 221 t~~d~~~~~~-~~da 234 (454)
T PRK09427 221 THAQVRELSP-FANG 234 (454)
T ss_pred CHHHHHHHHh-cCCE
Confidence 7766666765 6653
No 228
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=24.30 E-value=62 Score=24.77 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=13.2
Q ss_pred CCCeEEEEcCCCh-hHHHH
Q 029984 136 KHDEIIVGCQSGK-RSMMA 153 (184)
Q Consensus 136 ~~~~ivv~c~~g~-rs~~~ 153 (184)
.+.||+|+|..|. |+..+
T Consensus 165 ~~~pivVHC~~G~gRsg~~ 183 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGTF 183 (231)
T ss_pred CCCCeEEECCCCCCccchH
Confidence 4679999998764 76643
No 229
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=24.22 E-value=1.1e+02 Score=26.56 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=26.0
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeec
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l 168 (184)
+++.+|++++ +|..-..++..|++.|..+|+.+
T Consensus 334 ~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~~ 369 (439)
T PTZ00145 334 YDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAF 369 (439)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHHcCCCEEEEE
Confidence 4577888865 67788889999999999887643
No 230
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=24.22 E-value=1.4e+02 Score=24.10 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=24.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHccCCCeeeccc
Q 029984 137 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 170 (184)
Q Consensus 137 ~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~G 170 (184)
+++++|+ ..|+.+.-++..|.+.|..++++++-
T Consensus 127 ~k~vlil-GaGGaarAi~~aL~~~g~~~i~i~nR 159 (283)
T PRK14027 127 LDSVVQV-GAGGVGNAVAYALVTHGVQKLQVADL 159 (283)
T ss_pred CCeEEEE-CCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 5566666 55667777778888999988887653
No 231
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=24.18 E-value=1.4e+02 Score=24.02 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=24.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHccCCCeeeccc
Q 029984 137 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 170 (184)
Q Consensus 137 ~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~G 170 (184)
.++++|+ ..|.-+..++..|...|..++++++-
T Consensus 127 ~k~vlIl-GaGGaaraia~aL~~~G~~~I~I~nR 159 (284)
T PRK12549 127 LERVVQL-GAGGAGAAVAHALLTLGVERLTIFDV 159 (284)
T ss_pred CCEEEEE-CCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 4566666 55667777889999999988887764
No 232
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=24.14 E-value=90 Score=20.16 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
.+.||++.- ..-.......|...+.++++++ ||-.
T Consensus 49 ~~~PIll~~--~~l~~~~~~~l~~~~~~~v~ii-Gg~~ 83 (92)
T PF04122_consen 49 NNAPILLVN--NSLPSSVKAFLKSLNIKKVYII-GGEG 83 (92)
T ss_pred cCCeEEEEC--CCCCHHHHHHHHHcCCCEEEEE-CCCC
Confidence 456666654 3344677888888888888877 6643
No 233
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=24.05 E-value=1.4e+02 Score=22.77 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=20.9
Q ss_pred CCeEEEEcC---CChhHHHHHHHHHHccCCCee
Q 029984 137 HDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT 166 (184)
Q Consensus 137 ~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~ 166 (184)
++.|++.++ +|.....+...|++.|.++|.
T Consensus 124 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~ 156 (209)
T PRK00129 124 ERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIK 156 (209)
T ss_pred CCEEEEECCcccchHHHHHHHHHHHHcCCCEEE
Confidence 456666654 577777778888888876654
No 234
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=23.95 E-value=1.2e+02 Score=29.19 Aligned_cols=36 Identities=14% Similarity=0.334 Sum_probs=29.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHH-HccCCCeeeccccHH
Q 029984 137 HDEIIVGCQSGKRSMMAATDLL-NAGFAGITDIAGGFA 173 (184)
Q Consensus 137 ~~~ivv~c~~g~rs~~~~~~L~-~~G~~~v~~l~GG~~ 173 (184)
+.++||+|++...+......|. ..|++ +..+.||+.
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~~Gi~-~~~ihG~~s 529 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALREREGIR-AAVFHEGMS 529 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhccCee-EEEEECCCC
Confidence 5679999999888888999994 66985 667888865
No 235
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=23.94 E-value=1.4e+02 Score=22.74 Aligned_cols=30 Identities=23% Similarity=0.181 Sum_probs=20.0
Q ss_pred CCeEEEEcC---CChhHHHHHHHHHHccCCCee
Q 029984 137 HDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT 166 (184)
Q Consensus 137 ~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~ 166 (184)
++.|++.++ +|.....+...|++.|.++|.
T Consensus 122 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~ 154 (207)
T TIGR01091 122 ERTVIVLDPMLATGGTMIAALDLLKKRGAKKIK 154 (207)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHcCCCEEE
Confidence 445666653 566677777888888876654
No 236
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=23.68 E-value=1.1e+02 Score=26.34 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=29.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHH
Q 029984 137 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 174 (184)
Q Consensus 137 ~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~ 174 (184)
..+++|||++-..+......|...|+. +..+.|++..
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~~~~-~~~~~g~~~~ 371 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKDGIN-AAQLSGDVPQ 371 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCC-EEEEECCCCH
Confidence 457899999988888899999999985 7777777543
No 237
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=23.61 E-value=1.9e+02 Score=20.70 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=15.9
Q ss_pred CCHHHHHHHH---hcCCCCCeEEEEcCCCh-hHH
Q 029984 122 KNLKFVEEVS---TRFRKHDEIIVGCQSGK-RSM 151 (184)
Q Consensus 122 ~~~~~~~~~~---~~l~~~~~ivv~c~~g~-rs~ 151 (184)
..++.+..+. ..++++.-++|+|..|. |..
T Consensus 106 P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTT 139 (149)
T PF14566_consen 106 PDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTT 139 (149)
T ss_dssp --HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHH
Confidence 3444444443 34688899999999765 543
No 238
>PRK09694 helicase Cas3; Provisional
Probab=23.41 E-value=2e+02 Score=27.46 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCC--CeeeccccHH
Q 029984 124 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA--GITDIAGGFA 173 (184)
Q Consensus 124 ~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~--~v~~l~GG~~ 173 (184)
...++.+...+.+++.++|+|++-.++..++..|++.+.+ ++..+.+.+.
T Consensus 547 ~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 547 LTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 3445555555667788999999988999999999987532 4777877743
No 239
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=23.36 E-value=1.4e+02 Score=21.95 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=25.4
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeee
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 167 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~ 167 (184)
+++.++++++ +|.....+...|++.|..+++.
T Consensus 83 ~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~ 117 (166)
T TIGR01203 83 KGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKI 117 (166)
T ss_pred CCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEE
Confidence 3678888875 7888888999999999877654
No 240
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=23.25 E-value=1.5e+02 Score=19.15 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=18.3
Q ss_pred CCeEEEEcC------CChhHHHHHHHHHHccCC
Q 029984 137 HDEIIVGCQ------SGKRSMMAATDLLNAGFA 163 (184)
Q Consensus 137 ~~~ivv~c~------~g~rs~~~~~~L~~~G~~ 163 (184)
+.+||||.. ....+..+-..|.+.|.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~ 39 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD 39 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 456777755 344677777888887764
No 241
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=23.06 E-value=64 Score=28.19 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=32.1
Q ss_pred EEEEcCCChhHHHHHHHHHHccCCCeeeccccHH---------HHHhCCCCC
Q 029984 140 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA---------AWRQNGLPT 182 (184)
Q Consensus 140 ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~---------~W~~~g~p~ 182 (184)
=||||.......+.+-.|...|+. ...|..|++ +|-+...|+
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~-A~AYHAGLK~~ERTeVQe~WM~~~~Pv 308 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIP-AMAYHAGLKKKERTEVQEKWMNNEIPV 308 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcc-hHHHhcccccchhHHHHHHHhcCCCCE
Confidence 599999988889999999999985 444555543 677766665
No 242
>PLN02347 GMP synthetase
Probab=22.96 E-value=2.2e+02 Score=25.46 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=31.1
Q ss_pred HHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHH-ccCCCee--eccccH
Q 029984 127 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-AGFAGIT--DIAGGF 172 (184)
Q Consensus 127 ~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~-~G~~~v~--~l~GG~ 172 (184)
++.+.+.+.++.++++...+|..|..++..+.+ .|. ++. .++.|+
T Consensus 219 i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~-~v~av~id~g~ 266 (536)
T PLN02347 219 IELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGD-RLHCVFVDNGL 266 (536)
T ss_pred HHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCC-cEEEEEEeCCC
Confidence 444444556566788877888999999988888 684 554 355554
No 243
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=22.88 E-value=58 Score=22.73 Aligned_cols=29 Identities=28% Similarity=0.111 Sum_probs=21.9
Q ss_pred ChhHHHHHHHHHHc----cCCCeeeccccHHHH
Q 029984 147 GKRSMMAATDLLNA----GFAGITDIAGGFAAW 175 (184)
Q Consensus 147 g~rs~~~~~~L~~~----G~~~v~~l~GG~~~W 175 (184)
-.||..+...|+++ +-.++.+...|+.+|
T Consensus 9 ~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 9 ICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp SSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred cchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 44888888777776 556788888888766
No 244
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=22.85 E-value=2.4e+02 Score=20.77 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=31.5
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCe---eecc---ccHHHHHhCCCCCC
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGI---TDIA---GGFAAWRQNGLPTE 183 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v---~~l~---GG~~~W~~~g~p~~ 183 (184)
++++++++++ +|.....+...|++.|-+-+ .+++ |+-+..+..|.|+.
T Consensus 103 ~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~g~~~~l~~~gv~~~ 159 (170)
T PRK13811 103 KGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQGAEELLAELGITLT 159 (170)
T ss_pred CCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECCccHHHHHHhcCCcEE
Confidence 5778888886 68788888999999997522 2333 22333334677753
No 245
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=22.67 E-value=1.3e+02 Score=25.93 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=28.1
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeeccc
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIAG 170 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l~G 170 (184)
++++|+++++ +|.....++..|++.|.+.|.+...
T Consensus 337 ~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 337 RGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 5678999987 5778888999999999987775433
No 246
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=22.49 E-value=1.8e+02 Score=21.96 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=25.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHccCCCeeecccc
Q 029984 137 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 171 (184)
Q Consensus 137 ~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG 171 (184)
+++|+|+ ..|.-...++..|...|+.++.++|..
T Consensus 21 ~~~Vlvi-G~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLII-GAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEE-CCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3445555 555566788999999999889888876
No 247
>PLN02440 amidophosphoribosyltransferase
Probab=22.48 E-value=1.2e+02 Score=26.67 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=27.5
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeecc
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDIA 169 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l~ 169 (184)
+++.|+++++ +|.....++..|++.|.+.|++..
T Consensus 339 ~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v 375 (479)
T PLN02440 339 EGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRI 375 (479)
T ss_pred cCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEE
Confidence 4678999887 577888899999999998777543
No 248
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=22.40 E-value=1.4e+02 Score=25.48 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=25.6
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeee
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 167 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~ 167 (184)
+++.+|++++ +|..-..++..|++.|...|+.
T Consensus 263 ~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~ 297 (382)
T PRK06827 263 EGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIV 297 (382)
T ss_pred CCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEE
Confidence 4567888875 6778888999999999988764
No 249
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=22.11 E-value=1.1e+02 Score=22.76 Aligned_cols=66 Identities=12% Similarity=0.226 Sum_probs=36.3
Q ss_pred CeEEEcCChhhHhc--CCCCCcEEecc--cccc--CCC-CCCCHHHHHHHHh---cCCCCCeEEEEcCCCh-hHHHH
Q 029984 88 HRYLDVRTPEEFSA--GHATGAINVPY--MYRV--GSG-MTKNLKFVEEVST---RFRKHDEIIVGCQSGK-RSMMA 153 (184)
Q Consensus 88 ~~liDvR~~~e~~~--ghIpgAi~ip~--~~~~--~~~-~~~~~~~~~~~~~---~l~~~~~ivv~c~~g~-rs~~~ 153 (184)
-.+|-++.+.++.. --++-..++++ ++.. ..+ ....+.-+..... ..+..++++|+|.-|. ||.-+
T Consensus 34 t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~ 110 (172)
T COG5350 34 THMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAA 110 (172)
T ss_pred ceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeeccccccchHH
Confidence 56677777655532 22334444544 2222 223 2344555555444 4577899999999776 65433
No 250
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=21.93 E-value=2.3e+02 Score=21.54 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
..+.+....+++.+-+=+-|..| +.+..|.+.||+ |..+|..-.
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~G----RNalyLA~~G~~-VtAvD~s~~ 63 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEG----RNALYLASQGFD-VTAVDISPV 63 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTS----HHHHHHHHTT-E-EEEEESSHH
T ss_pred HHHHHHHhhcCCCcEEEcCCCCc----HHHHHHHHCCCe-EEEEECCHH
Confidence 45555566667777677778877 567889999996 877775543
No 251
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=21.88 E-value=1.6e+02 Score=21.87 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=23.8
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCee
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGIT 166 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~ 166 (184)
+++.|+++++ +|.....++..|++.|-+.|.
T Consensus 119 ~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~ 152 (178)
T PRK07322 119 KGKRVAIVDDVVSTGGTLTALERLVERAGGQVVA 152 (178)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCEEEE
Confidence 4677888876 677777888999999976443
No 252
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=21.81 E-value=1.8e+02 Score=21.36 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=24.6
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHccCCCe
Q 029984 135 RKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGI 165 (184)
Q Consensus 135 ~~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v 165 (184)
.++++|+++++ +|.....+...|++.|.+.+
T Consensus 112 ~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v 145 (175)
T PRK02304 112 KPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVV 145 (175)
T ss_pred CCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEE
Confidence 46788999886 67777788899999998654
No 253
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=21.80 E-value=1.1e+02 Score=26.02 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=34.1
Q ss_pred eEEEcCChhhHhc-CCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCC
Q 029984 89 RYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 163 (184)
Q Consensus 89 ~liDvR~~~e~~~-ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~ 163 (184)
+-|++|+..-|-- ..++|.==+|+. .+.++++.-.+|..|..+++.|++.|++
T Consensus 153 i~vEir~~~ayv~~~~~~G~GGLPvG----------------------s~gkvlvllSGGiDSpVAa~ll~krG~~ 206 (381)
T PRK08384 153 VGVELMEGKAYVFVDKVKAWGGLPIG----------------------TQGKVVALLSGGIDSPVAAFLMMKRGVE 206 (381)
T ss_pred EEEEEEeCeEEEEEEEeecCCCCccC----------------------CCCcEEEEEeCChHHHHHHHHHHHcCCe
Confidence 3466666555542 345555456652 2445665557788899999999999986
No 254
>PF10903 DUF2691: Protein of unknown function (DUF2691); InterPro: IPR020216 This entry represents a group of uncharacterised proteins.
Probab=21.71 E-value=2.9e+02 Score=20.34 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=48.6
Q ss_pred CCcccCHHHHHHHHhCC-C--eEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc---CCCCCeEEEEc
Q 029984 71 VPTSVPVRVAHELLQAG-H--RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---FRKHDEIIVGC 144 (184)
Q Consensus 71 ~~~~i~~~~~~~~~~~~-~--~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~---l~~~~~ivv~c 144 (184)
....++-.++++.+.++ + +++|.+. |..+..+..++- + ++++....+. +-...-|-|||
T Consensus 53 ~~~~~~G~~lk~~l~~~~YYlIF~dLkA---fp~~~~~~~I~t-y-----------eeFl~S~CelvllIvD~~yv~Iyc 117 (153)
T PF10903_consen 53 DEEIMTGSELKKLLKDNDYYLIFLDLKA---FPKGETVTEINT-Y-----------EEFLNSKCELVLLIVDSSYVSIYC 117 (153)
T ss_pred CceeeehHHHHHHhhcCCeEEEEEEeee---CcCCCCcccccc-H-----------HHHhcCCceEEEEEEeccEEEEEE
Confidence 34557888888888754 3 3456653 222221111111 1 1232222211 22345688899
Q ss_pred CCChhHHHHHHHHHHccCCCeeecc
Q 029984 145 QSGKRSMMAATDLLNAGFAGITDIA 169 (184)
Q Consensus 145 ~~g~rs~~~~~~L~~~G~~~v~~l~ 169 (184)
.....-..........||.|+..+.
T Consensus 118 Kd~~~i~~lyqna~~~gy~~i~yIT 142 (153)
T PF10903_consen 118 KDQEIIESLYQNAQNQGYENIEYIT 142 (153)
T ss_pred cCHHHHHHHHHHHHHCCceEEEEEe
Confidence 9877777888888999999887654
No 255
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=21.57 E-value=2.7e+02 Score=21.02 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcC---CChhHHHHHHHHHHccCCCe---eecccc----HHHHHhCCCCC
Q 029984 134 FRKHDEIIVGCQ---SGKRSMMAATDLLNAGFAGI---TDIAGG----FAAWRQNGLPT 182 (184)
Q Consensus 134 l~~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v---~~l~GG----~~~W~~~g~p~ 182 (184)
+.++++++++++ +|.....+...+++.|.+-+ .+++.+ .......|.|+
T Consensus 114 i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~~~~g~~~l~~~g~~~ 172 (189)
T PRK09219 114 LSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKSFQDGRKLLEEKGYRV 172 (189)
T ss_pred CCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEccCccHHHHHHhcCCcE
Confidence 567889999987 67777788899999997522 234433 33333456665
No 256
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=21.43 E-value=1.8e+02 Score=23.65 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=25.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHccCCCeeeccc
Q 029984 137 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 170 (184)
Q Consensus 137 ~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~G 170 (184)
++.++++ ..|+-+.-++..|.+.|..++.++.-
T Consensus 126 ~~~vlil-GAGGAarAv~~aL~~~g~~~i~V~NR 158 (283)
T COG0169 126 GKRVLIL-GAGGAARAVAFALAEAGAKRITVVNR 158 (283)
T ss_pred CCEEEEE-CCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 3555554 77778888999999999988877654
No 257
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=21.22 E-value=2.4e+02 Score=21.16 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=35.1
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccH
Q 029984 123 NLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 172 (184)
Q Consensus 123 ~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~ 172 (184)
.+.+++.....+.++-.+++.+............+.+.|+. +.+.++|+
T Consensus 135 ~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~ 183 (202)
T PRK00121 135 QPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGF-LVSEAGDY 183 (202)
T ss_pred CHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccc-ccccchhh
Confidence 35678888888888888888777665666778888888874 44445443
No 258
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=21.14 E-value=2.4e+02 Score=26.68 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 135 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 135 ~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
.+.+|++|+|++-..|...+..|.+.|+. ...|.+.-.
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~gi~-~~vLnakq~ 465 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKAGIP-HNVLNAKNH 465 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCc-eEeccCchH
Confidence 56789999999999999999999999995 556766533
No 259
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=20.99 E-value=1.8e+02 Score=25.21 Aligned_cols=47 Identities=9% Similarity=0.050 Sum_probs=29.6
Q ss_pred HHhcCCCCCeEEEEcCCChhHHHHHHHHHHc-----cC---CCeeeccccHHHHH
Q 029984 130 VSTRFRKHDEIIVGCQSGKRSMMAATDLLNA-----GF---AGITDIAGGFAAWR 176 (184)
Q Consensus 130 ~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~-----G~---~~v~~l~GG~~~W~ 176 (184)
+.+.++..-.-+++|++|..+..++-.|... |+ ++|-.+.|++.+|.
T Consensus 108 L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t 162 (460)
T PRK06916 108 LIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDT 162 (460)
T ss_pred HHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCccc
Confidence 3333443324688999999888777666543 43 34556778777764
No 260
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.98 E-value=2.8e+02 Score=22.29 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=31.4
Q ss_pred CHHHHHHHHhCC---CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHH----h----cCCCCCeEEEEc
Q 029984 76 PVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS----T----RFRKHDEIIVGC 144 (184)
Q Consensus 76 ~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~----~----~l~~~~~ivv~c 144 (184)
..+..++..+.+ .++||++... .+++.. +-++.++ . .+.++..+|+.|
T Consensus 147 ~yd~Ik~N~~~GLHTl~lLDi~~~~----------r~Mt~~-----------ea~~~LLe~e~~~~~~~~~~d~~~vvva 205 (260)
T COG1798 147 PYDVIKENLERGLHTLVLLDIKEDE----------RYMTAN-----------EALELLLEAEERRGRGVLTEDTLAVVVA 205 (260)
T ss_pred HHHHHHHhhhcCccceEEEEecccc----------cccCHH-----------HHHHHHHHHHHHhcCCCcCCCceEEEEE
Confidence 345555665555 6899999866 445542 1122111 1 256788899999
Q ss_pred CCChh
Q 029984 145 QSGKR 149 (184)
Q Consensus 145 ~~g~r 149 (184)
.-|.-
T Consensus 206 R~Gs~ 210 (260)
T COG1798 206 RAGSG 210 (260)
T ss_pred ecCCC
Confidence 86543
No 261
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=20.96 E-value=1.6e+02 Score=25.53 Aligned_cols=38 Identities=13% Similarity=0.049 Sum_probs=26.2
Q ss_pred eEEEEcCCChhHHHHHHHHHHc--cCCCeeeccccHHHHH
Q 029984 139 EIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 176 (184)
Q Consensus 139 ~ivv~c~~g~rs~~~~~~L~~~--G~~~v~~l~GG~~~W~ 176 (184)
.-+++|++|..+..+|-.|... |-+.|-.+.||+.+|.
T Consensus 114 ~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 153 (457)
T PRK05639 114 PKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQT 153 (457)
T ss_pred CEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 3577899999888877666553 4344555677777764
No 262
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=20.96 E-value=1.2e+02 Score=25.41 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHccCC
Q 029984 136 KHDEIIVGCQSGKRSMMAATDLLNAGFA 163 (184)
Q Consensus 136 ~~~~ivv~c~~g~rs~~~~~~L~~~G~~ 163 (184)
.+.++++...+|..|..+++.+.+.|++
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG~~ 198 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRGCR 198 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcCCe
Confidence 3455666667788888888888888874
No 263
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=20.88 E-value=1.4e+02 Score=24.81 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=25.2
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeee
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 167 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~ 167 (184)
+++.++++++ +|..-..++..|++.|.+.|+.
T Consensus 229 ~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~ 263 (326)
T PLN02297 229 AGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSA 263 (326)
T ss_pred CCCeEEEEecccCcHHHHHHHHHHHHHCCCcEEEE
Confidence 5677888875 6778888899999999887653
No 264
>PTZ00424 helicase 45; Provisional
Probab=20.88 E-value=1.5e+02 Score=24.66 Aligned_cols=36 Identities=11% Similarity=0.332 Sum_probs=29.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984 137 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173 (184)
Q Consensus 137 ~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~ 173 (184)
...+++||++-..+...+..|...|+. +..+.|++.
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~-~~~~h~~~~ 302 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFT-VSCMHGDMD 302 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence 346889999988888899999999884 777888864
No 265
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=20.79 E-value=1.1e+02 Score=19.03 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=21.3
Q ss_pred CcccCHHHHHHHHhCC--CeEEEcCChhh
Q 029984 72 PTSVPVRVAHELLQAG--HRYLDVRTPEE 98 (184)
Q Consensus 72 ~~~i~~~~~~~~~~~~--~~liDvR~~~e 98 (184)
..-++.+++.++..++ +.++|..+-++
T Consensus 17 s~YiTL~di~~lV~~g~~~~V~D~ktgeD 45 (64)
T PF07879_consen 17 SSYITLEDIAQLVREGEDFKVVDAKTGED 45 (64)
T ss_pred ceeEeHHHHHHHHHCCCeEEEEECCCCcc
Confidence 3457889999999876 78999997554
No 266
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.69 E-value=1.4e+02 Score=24.75 Aligned_cols=33 Identities=18% Similarity=0.080 Sum_probs=25.0
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeeec
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITDI 168 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~l 168 (184)
+++.+|++++ +|.....++..|++.|.++|+.+
T Consensus 229 ~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~ 264 (330)
T PRK02812 229 KGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYAC 264 (330)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEE
Confidence 4667777765 57777788899999998877643
No 267
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=20.55 E-value=1.8e+02 Score=19.16 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=19.2
Q ss_pred CCeEEEEcC------CChhHHHHHHHHHHccCC
Q 029984 137 HDEIIVGCQ------SGKRSMMAATDLLNAGFA 163 (184)
Q Consensus 137 ~~~ivv~c~------~g~rs~~~~~~L~~~G~~ 163 (184)
+.+||||.. .+..+.++-..|.+.|++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~ 43 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVP 43 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCC
Confidence 457888864 255677788888888874
No 268
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=20.51 E-value=1.6e+02 Score=19.50 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=11.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHccCC
Q 029984 138 DEIIVGCQSGKRSMMAATDLLNAGFA 163 (184)
Q Consensus 138 ~~ivv~c~~g~rs~~~~~~L~~~G~~ 163 (184)
.++++++... .....+.+.|+.
T Consensus 22 ~~vvvid~d~----~~~~~~~~~~~~ 43 (116)
T PF02254_consen 22 IDVVVIDRDP----ERVEELREEGVE 43 (116)
T ss_dssp SEEEEEESSH----HHHHHHHHTTSE
T ss_pred CEEEEEECCc----HHHHHHHhcccc
Confidence 3566665542 235555666653
No 269
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=20.41 E-value=2e+02 Score=21.78 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=24.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHccCCCeeecccc
Q 029984 139 EIIVGCQSGKRSMMAATDLLNAGFAGITDIAGG 171 (184)
Q Consensus 139 ~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG 171 (184)
+|.|+ ..|.-...++..|...|+.++.++|..
T Consensus 23 ~V~Iv-G~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 23 TVAIC-GLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred cEEEE-CcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 44444 556677788999999999888888766
No 270
>PF09554 RE_HaeII: HaeII restriction endonuclease; InterPro: IPR019058 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This family includes Type-2 restriction enzyme NgoBI, and HaeII. They recognise the double-stranded sequence RGCGCY and cleaves after C-5.
Probab=20.40 E-value=1.8e+02 Score=23.71 Aligned_cols=40 Identities=15% Similarity=0.368 Sum_probs=28.8
Q ss_pred CCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCC
Q 029984 122 KNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA 163 (184)
Q Consensus 122 ~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~ 163 (184)
.+.+..+.....+..| +||++|.+...+ .....|.+.|+.
T Consensus 238 L~~~laE~IV~sissd-rIvIVCkdaee~-vI~sLlnQIGW~ 277 (338)
T PF09554_consen 238 LDEELAENIVSSISSD-RIVIVCKDAEES-VIVSLLNQIGWK 277 (338)
T ss_pred ccHHHHHHHHhhcccC-eEEEEecchhHH-HHHHHHHHhhhH
Confidence 4556667777777766 588999976443 667788888884
No 271
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=20.21 E-value=2.6e+02 Score=19.60 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=23.3
Q ss_pred HHHHHHHhc--CCCCCeEEEEcCCChhH--HHHHHHHHHccCC
Q 029984 125 KFVEEVSTR--FRKHDEIIVGCQSGKRS--MMAATDLLNAGFA 163 (184)
Q Consensus 125 ~~~~~~~~~--l~~~~~ivv~c~~g~rs--~~~~~~L~~~G~~ 163 (184)
.+.+.+... +.+++.+|+++.+|... ..++...++.|..
T Consensus 90 ~~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~ 132 (138)
T PF13580_consen 90 GFARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMK 132 (138)
T ss_dssp THHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
Confidence 344555544 67788899999988753 3466777888875
No 272
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=20.15 E-value=2.3e+02 Score=17.53 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=20.9
Q ss_pred CCCCeEEEEcCCC-hhHHHHHHHHHHccCC
Q 029984 135 RKHDEIIVGCQSG-KRSMMAATDLLNAGFA 163 (184)
Q Consensus 135 ~~~~~ivv~c~~g-~rs~~~~~~L~~~G~~ 163 (184)
..+.+|++|...+ ..+..+-..|.+.|++
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~ 34 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYD 34 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCC
Confidence 3455688888754 4677777888888875
No 273
>PF11181 YflT: Heat induced stress protein YflT
Probab=20.14 E-value=1.8e+02 Score=19.44 Aligned_cols=7 Identities=29% Similarity=0.282 Sum_probs=3.1
Q ss_pred EEEEcCC
Q 029984 140 IIVGCQS 146 (184)
Q Consensus 140 ivv~c~~ 146 (184)
|.|+...
T Consensus 29 I~Vva~d 35 (103)
T PF11181_consen 29 IYVVAKD 35 (103)
T ss_pred EEEEEcC
Confidence 4444443
No 274
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=20.13 E-value=3.9e+02 Score=20.09 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=32.5
Q ss_pred HhCCCeEEEcCChhhHh-------cCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCC--hhHHHHH
Q 029984 84 LQAGHRYLDVRTPEEFS-------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG--KRSMMAA 154 (184)
Q Consensus 84 ~~~~~~liDvR~~~e~~-------~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g--~rs~~~~ 154 (184)
..++.+.|.-=...++- ...+|++..++-+ ......+....+|+++|..- ..+...+
T Consensus 36 vgeG~IYi~G~~Em~~v~~~Al~g~E~l~~~k~l~~~--------------~~~~~~lt~~DRVllfs~~~~~~e~~~~a 101 (172)
T PF10740_consen 36 VGEGTIYIYGFGEMEAVEAEALYGAEPLPSAKRLSED--------------LENFDELTETDRVLLFSPFSTDEEAVALA 101 (172)
T ss_dssp HTT--EEEEE-GGGGGGHHHHHCSTT--TTEEE--TT----------------------TT-EEEEEES-S--HHHHHHH
T ss_pred hcCCEEEEEecChHHHHHHHHHcCCCCCchhhcCccc--------------ccccccccccceEEEEeCCCCCHHHHHHH
Confidence 34667777765554432 4567788777631 11233456666888888743 3677889
Q ss_pred HHHHHccCC
Q 029984 155 TDLLNAGFA 163 (184)
Q Consensus 155 ~~L~~~G~~ 163 (184)
..|.+.|.+
T Consensus 102 ~~L~~~gi~ 110 (172)
T PF10740_consen 102 KQLIEQGIP 110 (172)
T ss_dssp HHHHHHT--
T ss_pred HHHHHCCCC
Confidence 999999986
No 275
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=20.08 E-value=2.1e+02 Score=22.97 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccc
Q 029984 135 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAG 170 (184)
Q Consensus 135 ~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~G 170 (184)
+.+++++|+ ..|+.+.-++..|.+.|..+++++.-
T Consensus 120 ~~~~~vlil-GaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 120 PPDLVVALR-GSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CCCCeEEEE-CCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 344566666 55667777888899999988877653
No 276
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=20.08 E-value=4.3e+02 Score=20.65 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=24.3
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHccCCCeee
Q 029984 136 KHDEIIVGCQ---SGKRSMMAATDLLNAGFAGITD 167 (184)
Q Consensus 136 ~~~~ivv~c~---~g~rs~~~~~~L~~~G~~~v~~ 167 (184)
+++.||+.++ +|.+..-+...+++.|-+++.+
T Consensus 123 ~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~Ivi 157 (220)
T COG1926 123 KGRTVILVDDGIATGATMKAAVRALRAKGPKEIVI 157 (220)
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEE
Confidence 4677788776 3666767789999999888775
Done!