Query 029985
Match_columns 184
No_of_seqs 133 out of 273
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 10:31:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 99.9 3.1E-22 1E-26 192.9 8.7 82 3-89 684-765 (772)
2 3szr_A Interferon-induced GTP- 99.8 3.3E-21 1.1E-25 178.7 8.7 84 1-86 523-606 (608)
3 3ljb_A Interferon-induced GTP- 99.4 8.7E-14 3E-18 120.3 6.0 60 1-62 212-271 (271)
4 3t34_A Dynamin-related protein 83.8 0.4 1.4E-05 40.6 1.7 23 59-81 333-355 (360)
5 2rig_A Interferon-gamma; cytok 56.0 43 0.0015 26.6 7.3 72 1-81 46-122 (144)
6 2x2e_A Dynamin-1; nitration, h 34.1 88 0.003 26.1 6.3 35 52-89 314-348 (353)
7 1d9c_A Interferon-gamma; helic 32.6 48 0.0016 25.6 4.0 70 1-79 46-120 (121)
8 3hyb_A RBCX protein; rubisco, 31.1 1.4E+02 0.0048 24.0 6.6 54 13-66 23-90 (155)
9 2rqw_B 24-meric peptide from s 30.0 32 0.0011 20.2 2.0 18 164-181 7-24 (26)
10 3ka1_A RBCX protein; chaperone 27.6 1.9E+02 0.0065 22.4 6.7 52 14-65 4-70 (126)
11 3bbp_D GRIP and coiled-coil do 25.8 76 0.0026 22.5 3.7 56 29-89 13-68 (71)
12 2oxj_A Hybrid alpha/beta pepti 24.0 61 0.0021 20.1 2.6 23 50-72 8-30 (34)
13 3fnr_A Arginyl-tRNA synthetase 23.7 1.7E+02 0.0059 26.3 6.7 68 4-83 379-446 (464)
14 2py8_A Hypothetical protein RB 21.9 3E+02 0.01 21.7 11.5 52 14-65 4-70 (147)
15 2cr7_A Paired amphipathic heli 20.6 2.1E+02 0.0073 19.7 5.3 24 4-28 12-35 (80)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.86 E-value=3.1e-22 Score=192.87 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=73.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 029985 3 QEVRGYFEAVLNSLATNVSKAIVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQ 82 (184)
Q Consensus 3 ~~V~SYF~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~~~~~l~eLL~Edp~I~~RRe~c~k~L~~LkkA~~~ 82 (184)
.+|+|||+||+|+|.|+|||||||||||++|+.|+.+|+.+||+.+ ++++||+|++++++||++|++|+.+|++|
T Consensus 684 ~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ly~~~--~~~~lm~Es~~~~~~r~~~~~~~~~l~~a--- 758 (772)
T 3zvr_A 684 NLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCG--DQNTLMEESAEQAQRRDEMLRMYHALKEA--- 758 (772)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTC--CTTTTTCCCHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CHHHHHhcCHHHHHHHHHHHHHHHHHHHH---
Confidence 4799999999999999999999999999999999999999999996 69999999999999999997777666666
Q ss_pred Hhhhhhh
Q 029985 83 LSIHDNR 89 (184)
Q Consensus 83 Lsi~~~~ 89 (184)
|.+++++
T Consensus 759 ~~ii~~i 765 (772)
T 3zvr_A 759 LSIIGDI 765 (772)
T ss_dssp HHHHC--
T ss_pred HHHHHhc
Confidence 5555666
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.84 E-value=3.3e-21 Score=178.72 Aligned_cols=84 Identities=12% Similarity=0.235 Sum_probs=79.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 029985 1 MSQEVRGYFEAVLNSLATNVSKAIVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLT 80 (184)
Q Consensus 1 ~~~~V~SYF~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~~~~~l~eLL~Edp~I~~RRe~c~k~L~~LkkA~ 80 (184)
|..+|.|||+||+|+|+|+|||+||||||+++++.||.+|+..||+.+ .+++||+|||+|++||++|++++++|++|.
T Consensus 523 i~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~~~~--~~~~ll~E~~~~~~~R~~l~~~~~~L~~A~ 600 (608)
T 3szr_A 523 IFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKD--TYSWLLKERSDTSDKRKFLKERLARLTQAR 600 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCHH--HHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcch--hHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999999875 799999999999999999999999999999
Q ss_pred HHHhhh
Q 029985 81 RQLSIH 86 (184)
Q Consensus 81 ~~Lsi~ 86 (184)
+.|..|
T Consensus 601 ~~l~~~ 606 (608)
T 3szr_A 601 RRLAQF 606 (608)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 999876
No 3
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=99.43 E-value=8.7e-14 Score=120.30 Aligned_cols=60 Identities=10% Similarity=0.222 Sum_probs=54.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHhhcCHHH
Q 029985 1 MSQEVRGYFEAVLNSLATNVSKAIVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNV 62 (184)
Q Consensus 1 ~~~~V~SYF~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~~~~~l~eLL~Edp~I 62 (184)
|.++|.+||+||+++|+|+|||+|+++||+.+++.||.+|+..||..+ .++.||+||+++
T Consensus 212 i~~~l~sYf~i~~~rl~d~IP~~I~~~ll~~~~~~lQ~~ml~~l~~~~--~~~~LL~E~~d~ 271 (271)
T 3ljb_A 212 IFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKD--TYSWLLKERSDT 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSCGG--GHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhchh--hHHHHhcCCCCC
Confidence 456899999999999999999999999999999999999999999986 799999999975
No 4
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=83.82 E-value=0.4 Score=40.60 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 029985 59 DQNVKRRRDRYQKQSELLSKLTR 81 (184)
Q Consensus 59 dp~I~~RRe~c~k~L~~LkkA~~ 81 (184)
||++++||+.|.++|++|+.|..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~ 355 (360)
T 3t34_A 333 DPAIMERRSAISKRLELYRAAQS 355 (360)
T ss_dssp ----CCCTTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999998864
No 5
>2rig_A Interferon-gamma; cytokine; 2.30A {Oryctolagus cuniculus} SCOP: a.26.1.3
Probab=56.03 E-value=43 Score=26.60 Aligned_cols=72 Identities=22% Similarity=0.245 Sum_probs=38.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHh-----hcCHHHHHHHHHHHHHHHH
Q 029985 1 MSQEVRGYFEAVLNSLATNVSKAIVLCQVEKAKEDMLNQLYSSVGAQSTARIEELL-----QEDQNVKRRRDRYQKQSEL 75 (184)
Q Consensus 1 ~~~~V~SYF~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~~~~~l~eLL-----~Edp~I~~RRe~c~k~L~~ 75 (184)
|||-|+=||.|.-.-..+. +|---| ...|++| +.+.+......++.++ +.+.. .-.|+++.+...+
T Consensus 46 ~SqIvs~Y~klF~~m~~~q---~iq~s~-~~Ik~~L----~~~~f~~~~~kl~d~~~L~~i~vnD~-~VQrKAi~EL~~V 116 (144)
T 2rig_A 46 QSQIVSFYFKLFDNLKDHE---VIKKSM-ESIKEDI----FVKFFNSNLTKMDDFQNLTRISVDDR-LVQRKAVSELSNV 116 (144)
T ss_pred HHHHHHHHHHHHHHhccCH---HHHHHH-HHHHHHH----HHHHccCcHHHHHHHHHHHhccCCcH-HHHHHHHHHHHHH
Confidence 6788899999875333222 222222 4444454 5555444444455544 23333 3357777777777
Q ss_pred HHHHHH
Q 029985 76 LSKLTR 81 (184)
Q Consensus 76 LkkA~~ 81 (184)
|.+|..
T Consensus 117 ~~~lS~ 122 (144)
T 2rig_A 117 LNFLSP 122 (144)
T ss_pred HHHhCc
Confidence 766544
No 6
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=34.15 E-value=88 Score=26.09 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=20.5
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029985 52 IEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNR 89 (184)
Q Consensus 52 l~eLL~Edp~I~~RRe~c~k~L~~LkkA~~~Lsi~~~~ 89 (184)
+++...+++.-..||..+ +.++.+-.+.+++++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~ 348 (353)
T 2x2e_A 314 YKNFRPDKHGTDSRVDEM---LRMYHALKEALSIIGNI 348 (353)
T ss_dssp HHHHCCCSSSCCHHHHHH---HHHHHHHHHHHHHCC--
T ss_pred ccCCCCCchhhhhHHHHH---HHHHHHHHHHHHHhcCc
Confidence 444444555544556666 56666777778888887
No 7
>1d9c_A Interferon-gamma; helical homodimer, immune system; 2.00A {Bos taurus} SCOP: a.26.1.3 PDB: 1d9g_A 1rfb_A
Probab=32.55 E-value=48 Score=25.61 Aligned_cols=70 Identities=21% Similarity=0.262 Sum_probs=37.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHh-----hcCHHHHHHHHHHHHHHHH
Q 029985 1 MSQEVRGYFEAVLNSLATNVSKAIVLCQVEKAKEDMLNQLYSSVGAQSTARIEELL-----QEDQNVKRRRDRYQKQSEL 75 (184)
Q Consensus 1 ~~~~V~SYF~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~~~~~l~eLL-----~Edp~I~~RRe~c~k~L~~ 75 (184)
|||-|+=||.|.- ++.| -|. |--- +...|++| +...+......++.++ +.+.-. -.|+++.+...+
T Consensus 46 ~SqIvs~Y~klF~-~m~~-~q~-iq~s-~~~Ik~~l----~~~~f~~~~~kl~~~~~L~~i~vnd~~-VQrKAi~EL~~V 116 (121)
T 1d9c_A 46 QSQIVSFYFKLFE-NLKD-NQV-IQRS-MDIIKQDM----FQKFLNGSSEKLEDFKKLIQIPVDDLQ-IQRKAINELIKV 116 (121)
T ss_dssp HHHHHHHHHHHHH-TTTT-CTT-THHH-HHHHHHHH----HHHHSTTCHHHHHHHHHHHTCCSSCHH-HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHH-Hhcc-CHH-HHHH-HHHHHHHH----HHHHccCcHHHHHHHHHHHhccCCcHH-HHHHHHHHHHHH
Confidence 5788888998864 3333 121 1111 14445554 5555554444455554 233333 357777777777
Q ss_pred HHHH
Q 029985 76 LSKL 79 (184)
Q Consensus 76 LkkA 79 (184)
|.+|
T Consensus 117 ~~~l 120 (121)
T 1d9c_A 117 MNDL 120 (121)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7654
No 8
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C
Probab=31.08 E-value=1.4e+02 Score=23.97 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh-------hcchHhHHHHhhcCHHHHHHH
Q 029985 13 LNSLATNVSKAIVLCQVEKAKEDMLNQLYSS-------VG-------AQSTARIEELLQEDQNVKRRR 66 (184)
Q Consensus 13 rk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~-------LY-------~~~~~~l~eLL~Edp~I~~RR 66 (184)
.|.|+.-|=|.++.++-=+|-..++.+|++- || +....=++.|++|+++++.|=
T Consensus 23 ~k~iakDtak~L~~YfTYqAvr~VLaQL~EtNP~~y~wL~~F~s~~iqDGe~fl~~L~~E~~~LA~RI 90 (155)
T 3hyb_A 23 LKQIAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSAGKVQDGEKYIEELFLEKPDLALRI 90 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCSSHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCcccHHHHHHHHHhhCHHHHHHH
Confidence 3677788888888888888877777766542 11 111234789999999987663
No 9
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=30.03 E-value=32 Score=20.17 Aligned_cols=18 Identities=39% Similarity=0.730 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 029985 164 RRTPNRVPPPPPPTQSGS 181 (184)
Q Consensus 164 ~~~~~r~~~~~~~~~~~~ 181 (184)
+-.|.|+.|-||++++.+
T Consensus 7 KFiPsRPAPKPP~s~t~s 24 (26)
T 2rqw_B 7 KFIPSRPAPKPPSSASAS 24 (26)
T ss_dssp SSCCSSCCCCCSSCSCCC
T ss_pred ccccCCCCCCCCCCCccc
Confidence 678999988888766543
No 10
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=27.63 E-value=1.9e+02 Score=22.39 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh--------hcchHhHHHHhhcCHHHHHH
Q 029985 14 NSLATNVSKAIVLCQVEKAKEDMLNQLYSS-------VG--------AQSTARIEELLQEDQNVKRR 65 (184)
Q Consensus 14 k~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~-------LY--------~~~~~~l~eLL~Edp~I~~R 65 (184)
|.|+.-|=|.++.++-=+|-..++.+|++- || +.+..=++.|++|+++++.|
T Consensus 4 k~ia~Dtak~L~~yfTY~Avr~Vl~QL~E~np~~~~wL~~F~~~~~~~DGe~fl~~L~~E~~~LA~R 70 (126)
T 3ka1_A 4 KHIAKQTTKTLISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFR 70 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCccHHHHHHHHHhhCHHHHHH
Confidence 566667777777777777766666555432 11 11223468999999988765
No 11
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=25.81 E-value=76 Score=22.54 Aligned_cols=56 Identities=25% Similarity=0.369 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhcchHhHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029985 29 VEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNR 89 (184)
Q Consensus 29 Vn~sKe~Lq~~L~s~LY~~~~~~l~eLL~Edp~I~~RRe~c~k~L~~LkkA~~~Lsi~~~~ 89 (184)
+.-+++.|...|-..= +. .+-+.+||.|++....| +.+++++||.=.+.|.....|
T Consensus 13 ~~~s~eel~~~L~~~~-k~-~~Hl~~LL~EsEatnar---L~eq~~lLK~EIRRlERnqeR 68 (71)
T 3bbp_D 13 AEFTKEELVQKLSSTT-KS-ADHLNGLLRETEATNAI---LMEQIKLLKSEIRRLERNQER 68 (71)
T ss_dssp -----------------CT-TSHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTC--
T ss_pred ccCCHHHHHHHHHHHH-HH-HHHHHHHHHhccchHHH---HHHHHHHHHHHHHHHHhhHhh
Confidence 3446666666654432 22 34689999999988876 777899999988888766555
No 12
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=24.03 E-value=61 Score=20.07 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=15.8
Q ss_pred HhHHHHhhcCHHHHHHHHHHHHH
Q 029985 50 ARIEELLQEDQNVKRRRDRYQKQ 72 (184)
Q Consensus 50 ~~l~eLL~Edp~I~~RRe~c~k~ 72 (184)
++.++||.|+.+...+=.+++.+
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Confidence 36788888888777665555443
No 13
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=23.72 E-value=1.7e+02 Score=26.34 Aligned_cols=68 Identities=6% Similarity=-0.022 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029985 4 EVRGYFEAVLNSLATNVSKAIVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQL 83 (184)
Q Consensus 4 ~V~SYF~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~~~~~l~eLL~Edp~I~~RRe~c~k~L~~LkkA~~~L 83 (184)
.+..|-++|.+...+.=|..|...|.+-++ ..+.+|... ..|.|++++..-|=.+.+.. .|+.+...|
T Consensus 379 ~L~~~~~~v~~a~~~~ep~~i~~yL~~La~--~~n~fY~~~---------~vl~~~~~~~~aRL~L~~a~-vL~~gL~lL 446 (464)
T 3fnr_A 379 EALNLKAVLNDAFEARALQKIPDYLKNLAA--NFHKFYNEN---------KVVGSANENDLLKLFSLVAL-SIKTAFSLM 446 (464)
T ss_dssp HHHTHHHHHHHHHHHTCTTHHHHHHHHHHH--HHHHHHHHC---------CCTTSTTHHHHHHHHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHHHhC---------cCCCCCHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 345666777777777777777766666553 334444432 24566667777777776666 677766666
No 14
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=21.89 E-value=3e+02 Score=21.73 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhh--------cchHhHHHHhhcCHHHHHH
Q 029985 14 NSLATNVSKAIVLCQVEKAKEDMLNQL-------YSSVGA--------QSTARIEELLQEDQNVKRR 65 (184)
Q Consensus 14 k~I~D~VPKAIMh~LVn~sKe~Lq~~L-------~s~LY~--------~~~~~l~eLL~Edp~I~~R 65 (184)
|.|.+-+=|+++.++-=+|-+.++.+| |.-|+. ...+=++.||+|+++++.|
T Consensus 4 k~~~kdaAk~L~~yfTy~AvR~VL~QL~EtNP~~y~wL~~Fl~~npl~DGd~fL~~Lmre~~~LAlR 70 (147)
T 2py8_A 4 KHIAQATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKELVLR 70 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCSSHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcCCCccHHHHHHHHHhhCHHHHHH
Confidence 455555556666666555555555554 333331 1223478899999998766
No 15
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=20.55 E-value=2.1e+02 Score=19.71 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 029985 4 EVRGYFEAVLNSLATNVSKAIVLCQ 28 (184)
Q Consensus 4 ~V~SYF~IVrk~I~D~VPKAIMh~L 28 (184)
+..+|++.|+....|. |-..-.||
T Consensus 12 dA~~yl~~VK~rF~~~-p~~Y~~FL 35 (80)
T 2cr7_A 12 DALTYLDQVKIRFGSD-PATYNGFL 35 (80)
T ss_dssp CSHHHHHHHHHHTSSC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHccC-hHHHHHHH
Confidence 3468999999999884 65544444
Done!