Query 029985
Match_columns 184
No_of_seqs 133 out of 273
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 10:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029985.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029985hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ykhb1 a.252.1.1 (B:2-130) RN 50.7 38 0.0028 24.0 8.5 65 20-86 57-128 (129)
2 d1iq0a1 a.27.1.1 (A:467-592) A 32.1 43 0.0031 22.8 5.4 59 4-69 42-103 (126)
3 d3besl1 a.26.1.3 (L:0-126) Int 30.1 30 0.0022 25.2 4.4 70 1-79 47-121 (127)
4 d1d9ca_ a.26.1.3 (A:) Interfer 25.0 39 0.0029 24.1 4.2 70 1-79 46-120 (121)
5 d1nkua_ a.96.1.4 (A:) 3-Methyl 22.4 16 0.0012 27.8 1.6 43 43-89 67-109 (187)
6 d3bb9a1 d.17.4.16 (A:27-147) U 20.6 18 0.0013 22.8 1.4 30 30-59 2-31 (121)
7 d2f05a1 a.59.1.1 (A:1-85) Sin3 18.5 1.1E+02 0.0083 19.4 5.6 17 5-22 10-26 (85)
8 d1v89a_ b.55.1.1 (A:) Rho-GTPa 17.9 22 0.0016 22.5 1.3 17 114-130 100-116 (118)
9 d2id3a2 a.121.1.1 (A:81-203) P 17.7 1.3E+02 0.0096 19.8 7.4 32 3-34 8-39 (123)
10 d2jf2a1 b.81.1.1 (A:1-262) UDP 17.3 21 0.0015 27.2 1.3 40 37-77 215-254 (262)
No 1
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=50.68 E-value=38 Score=24.02 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc------chHhHHHHhhcCHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 029985 20 VSKAIVLCQVEKAKEDMLNQLYSSVGAQ------STARIEELLQEDQNVKRRRDR-YQKQSELLSKLTRQLSIH 86 (184)
Q Consensus 20 VPKAIMh~LVn~sKe~Lq~~L~s~LY~~------~~~~l~eLL~Edp~I~~RRe~-c~k~L~~LkkA~~~Lsi~ 86 (184)
-+|..-.-+|.++|. ...|+.+|=.. ....+.+|-+|...+.++|++ +++.=++|+++..+|..+
T Consensus 57 ~~~elA~dii~kakq--Id~LI~sLP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i~~i 128 (129)
T d1ykhb1 57 TIDELSTDIILKTRQ--INKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDF 128 (129)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh--HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777776 35667776432 145678999999999977754 445556677777777543
No 2
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
Probab=32.09 E-value=43 Score=22.83 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhH---HHHhhcCHHHHHHHHHH
Q 029985 4 EVRGYFEAVLNSLATNVSKAIVLCQVEKAKEDMLNQLYSSVGAQSTARI---EELLQEDQNVKRRRDRY 69 (184)
Q Consensus 4 ~V~SYF~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~~~~~l---~eLL~Edp~I~~RRe~c 69 (184)
.+..|-++|.+...+.=|-.|.++|-+ +...|.+.|.... .+ ...+.|++++...|-.+
T Consensus 42 ~l~~~p~vl~~a~~~~~Ph~l~~yl~~------La~~F~~fY~~~~-~~~~~~~i~~~~~~~~~~RL~L 103 (126)
T d1iq0a1 42 DLLDFEEAVLEAAEERTPHVLAQYLLD------LAASWNAYYNARE-NGQPATPVLTAPEGLRELRLSL 103 (126)
T ss_dssp HHTTHHHHHHHHHHHTCHHHHHHHHHH------HHHHHHHHHHCEE-TTEESSCSTTSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHhcc-cccccccccCCCHHHHHHHHHH
Confidence 355677888888888888666666644 4445666675321 11 22567787777666543
No 3
>d3besl1 a.26.1.3 (L:0-126) Interferon-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.14 E-value=30 Score=25.15 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=36.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHhh-----cCHHHHHHHHHHHHHHHH
Q 029985 1 MSQEVRGYFEAVLNSLATNVSKAIVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQ-----EDQNVKRRRDRYQKQSEL 75 (184)
Q Consensus 1 ~~~~V~SYF~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~~~~~l~eLL~-----Edp~I~~RRe~c~k~L~~ 75 (184)
|||-|.=||.|-- ++.|.=. |...-+.+.++|+..........+++++. ++ +..-.|+++.+....
T Consensus 47 ~SQIVs~Y~klFe-n~k~nq~-------iq~si~~Ike~l~~~f~~~~~~K~~df~~L~ki~vn-D~~VQrKAi~EL~~V 117 (127)
T d3besl1 47 QSQIVSFYFKLFK-NFKDDQS-------IQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVT-DLNVQRKAIHELIQV 117 (127)
T ss_dssp HHHHHHHHHHHHH-TTTTCST-------THHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHCCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCcccHH-------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHH
Confidence 4778888988874 3333211 33333444555555544444444555432 22 223357777666666
Q ss_pred HHHH
Q 029985 76 LSKL 79 (184)
Q Consensus 76 LkkA 79 (184)
|.++
T Consensus 118 ~~~L 121 (127)
T d3besl1 118 MAEL 121 (127)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 4
>d1d9ca_ a.26.1.3 (A:) Interferon-gamma {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.96 E-value=39 Score=24.12 Aligned_cols=70 Identities=17% Similarity=0.285 Sum_probs=39.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHhh-----cCHHHHHHHHHHHHHHHH
Q 029985 1 MSQEVRGYFEAVLNSLATNVSKAIVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQ-----EDQNVKRRRDRYQKQSEL 75 (184)
Q Consensus 1 ~~~~V~SYF~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~~~~~l~eLL~-----Edp~I~~RRe~c~k~L~~ 75 (184)
|||-|.-|+.|-- ++.|.-| +.+.-+.+..+|+...|..+...+++|+. .+.. .-.|+++.+.+..
T Consensus 46 lSqIvs~Y~kife-nl~~~~~-------~~~si~~ik~~l~~~~~~~~~~kl~dl~~L~~i~vnd~-~IQrKAlnEL~~V 116 (121)
T d1d9ca_ 46 QSQIVSFYFKLFE-NLKDNQV-------IQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDL-QIQRKAINELIKV 116 (121)
T ss_dssp HHHHHHHHHHHHH-TTTTCTT-------THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTCCSSCH-HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHH-hCcccch-------hHhhHHHHHHHHHHHhccCcHHHHHHHHHHHhccCCcH-HHHHHHHHHHHHH
Confidence 4677888888874 3443322 12333344455666666666555665543 2222 3356777777777
Q ss_pred HHHH
Q 029985 76 LSKL 79 (184)
Q Consensus 76 LkkA 79 (184)
|.++
T Consensus 117 ~~~l 120 (121)
T d1d9ca_ 117 MNDL 120 (121)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 5
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]}
Probab=22.37 E-value=16 Score=27.80 Aligned_cols=43 Identities=23% Similarity=0.411 Sum_probs=29.9
Q ss_pred HHhhcchHhHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029985 43 SVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNR 89 (184)
Q Consensus 43 ~LY~~~~~~l~eLL~Edp~I~~RRe~c~k~L~~LkkA~~~Lsi~~~~ 89 (184)
.+..-+.+++++||+ |+.|+.-|.++ ..+...|+-.|.+...-
T Consensus 67 ~vA~~~e~~ie~Ll~-d~~IIRNr~KI---~Avi~NAr~~l~i~~e~ 109 (187)
T d1nkua_ 67 KVAAMQEEDVERLVQ-DAGIIRHRGKI---QAIIGNARAYLQMEQNG 109 (187)
T ss_dssp HHHTCCHHHHHHHHT-CCSSCCCHHHH---HHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHhc-cCCeeechHHH---HHHHHHHHHHHHHHHhc
Confidence 444444568999996 78888888888 46667887777665443
No 6
>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]}
Probab=20.61 E-value=18 Score=22.84 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhcchHhHHHHhhcC
Q 029985 30 EKAKEDMLNQLYSSVGAQSTARIEELLQED 59 (184)
Q Consensus 30 n~sKe~Lq~~L~s~LY~~~~~~l~eLL~Ed 59 (184)
..+..+++++++..+.+.+.+.+..|+.+|
T Consensus 2 ~~a~~~v~~~~~~A~~~~D~~~~~~l~a~D 31 (121)
T d3bb9a1 2 DSAAGNVVKQFHAALQMGNEAIVRQSLAAN 31 (121)
T ss_dssp TSHHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHhhCCC
Confidence 345556666666666666666666666655
No 7
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.54 E-value=1.1e+02 Score=19.41 Aligned_cols=17 Identities=6% Similarity=0.225 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 029985 5 VRGYFEAVLNSLATNVSK 22 (184)
Q Consensus 5 V~SYF~IVrk~I~D~VPK 22 (184)
-.+|++-|+..+.|. |=
T Consensus 10 A~~yl~kVK~rf~~~-p~ 26 (85)
T d2f05a1 10 AISYVNKIKTRFLDH-PE 26 (85)
T ss_dssp HHHHHHHHHHHTTTC-HH
T ss_pred HHHHHHHHHHHHccC-HH
Confidence 457999999999875 53
No 8
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.92 E-value=22 Score=22.51 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=13.5
Q ss_pred CcchHHHHHHHhCCCCC
Q 029985 114 GDDWRSAFDAAANGPVS 130 (184)
Q Consensus 114 ~d~w~~af~~~~~~~~~ 130 (184)
.++|..|+.+|++..+.
T Consensus 100 ~~~Wi~aI~~a~~~~p~ 116 (118)
T d1v89a_ 100 MEEWVKFLRRVAGSGPS 116 (118)
T ss_dssp HHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHccCCC
Confidence 36999999999876553
No 9
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=17.68 E-value=1.3e+02 Score=19.75 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=25.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029985 3 QEVRGYFEAVLNSLATNVSKAIVLCQVEKAKE 34 (184)
Q Consensus 3 ~~V~SYF~IVrk~I~D~VPKAIMh~LVn~sKe 34 (184)
+++..|+..+.+.+.+-...++++.++..+..
T Consensus 8 ~DL~~~l~~~~~~l~~p~~~~~~~~l~ae~~~ 39 (123)
T d2id3a2 8 EDLRANARLVVRTLDDPRQGRLFRALIAASLC 39 (123)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHhcC
Confidence 46778888888888888888888888776654
No 10
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}
Probab=17.31 E-value=21 Score=27.23 Aligned_cols=40 Identities=8% Similarity=0.191 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcchHhHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 029985 37 LNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLS 77 (184)
Q Consensus 37 q~~L~s~LY~~~~~~l~eLL~Edp~I~~RRe~c~k~L~~Lk 77 (184)
+.++|..||+... .+++++++-.+..+.-++.+++++.++
T Consensus 215 lk~~~k~L~~~~~-~l~~~~~~l~~~~~~~~~v~~~i~Fi~ 254 (262)
T d2jf2a1 215 IRNAYKLIYRSGK-TLDEVKPEIAELAETYPEVKAFTDFFA 254 (262)
T ss_dssp HHHHHHHHHTSCC-CHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 4566777776552 455555443333333334444455443
Done!