BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>029986
MSPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS
KNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP
IRIKELRNIWQHVAQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKPR
FLVS
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with RR1 RR1 RR1 AT3G16857	protein from Arabidopsis thaliana	7.7e-50
BLAST match view associations BLAST with RR2 RR2 RR2 AT4G16110	protein from Arabidopsis thaliana	1.3e-49
BLAST match view associations BLAST with ARR11 ARR11 ARR11 AT1G67710	protein from Arabidopsis thaliana	2.7e-45
BLAST match view associations BLAST with RR10 RR10 RR10 AT4G31920	protein from Arabidopsis thaliana	5.2e-42
BLAST match view associations BLAST with RR12 RR12 RR12 AT2G25180	protein from Arabidopsis thaliana	7.5e-41
BLAST match view associations BLAST with RR14 RR14 RR14 AT2G01760	protein from Arabidopsis thaliana	4.2e-40
BLAST match view associations BLAST with APRR4 APRR4 APRR4 AT5G49240	protein from Arabidopsis thaliana	1.4e-23
BLAST match view associations BLAST with Q7Y0W3 Q7Y0W3 Q7Y0W3 Two-component response regulator EHD1	protein from Oryza sativa Indica Group	3.4e-22
BLAST match view associations BLAST with EHD1 EHD1 EHD1 Two-component response regulator EHD1	protein from Oryza sativa Japonica Group	3.4e-22
BLAST match view associations BLAST with PRR9 PRR9 PRR9 AT2G46790	protein from Arabidopsis thaliana	1.0e-15
BLAST match view associations BLAST with CPS_4272 CPS_4272 CPS_4272 sigma-54 dependent response regulator	protein from Colwellia psychrerythraea 34H	8.4e-13
BLAST match view associations BLAST with regA regA regA response regulator receiver domain-containing protein	gene from Dictyostelium discoideum	1.7e-12
BLAST match view associations BLAST with TOC1 TOC1 TOC1 AT5G61380	protein from Arabidopsis thaliana	1.9e-12
BLAST match view associations BLAST with PRR7 PRR7 PRR7 AT5G02810	protein from Arabidopsis thaliana	1.9e-12
BLAST match view associations BLAST with GSU_2693 GSU_2693 GSU_2693 response regulator	protein from Geobacter sulfurreducens PCA	5.0e-12
BLAST match view associations BLAST with rcsC rcsC rcsC RcsC sensory histidine kinase	protein from Escherichia coli K-12	1.2e-11
BLAST match view associations BLAST with BA_0585 BA_0585 BA_0585 DNA-binding response regulator	protein from Bacillus anthracis str. Ames	2.2e-11
BLAST match view associations BLAST with rr6 rr6 rr6 Type A response regulator 6	protein from Oryza sativa Indica Group	2.8e-11
BLAST match view associations BLAST with rr3 rr3 rr3 Type A response regulator 3	protein from Oryza sativa Indica Group	2.8e-11
BLAST match view associations BLAST with SPO_1679 SPO_1679 SPO_1679 DNA-binding response regulator CtrA	protein from Ruegeria pomeroyi DSS-3	2.8e-11
BLAST match view associations BLAST with BA_0287 BA_0287 BA_0287 DNA-binding response regulator	protein from Bacillus anthracis str. Ames	7.4e-11
BLAST match view associations BLAST with BA_3900 BA_3900 BA_3900 lantibiotic biosynthesis DNA-binding response regulator, putative	protein from Bacillus anthracis str. Ames	7.4e-11
BLAST match view associations BLAST with SO_2426 SO_2426 SO_2426 DNA-binding response regulator	protein from Shewanella oneidensis MR-1	7.4e-11
BLAST match view associations BLAST with BA_1119 BA_1119 BA_1119 DNA-binding response regulator	protein from Bacillus anthracis str. Ames	1.5e-10
BLAST match view associations BLAST with BA_3229 BA_3229 BA_3229 DNA-binding response regulator	protein from Bacillus anthracis str. Ames	2.5e-10
BLAST match view associations BLAST with CPS_2786 CPS_2786 CPS_2786 response regulator	protein from Colwellia psychrerythraea 34H	2.5e-10
BLAST match view associations BLAST with mprA mprA mprA Response regulator MprA	protein from Mycobacterium tuberculosis	3.2e-10
BLAST match view associations BLAST with CJE_1397 CJE_1397 CJE_1397 DNA-binding response regulator	protein from Campylobacter jejuni RM1221	3.2e-10
BLAST match view associations BLAST with csrR csrR csrR DNA-binding response regulator CsrR	protein from Streptococcus agalactiae A909	4.1e-10
BLAST match view associations BLAST with CHY_0606 CHY_0606 CHY_0606 DNA-binding response regulator	protein from Carboxydothermus hydrogenoformans Z-2901	4.1e-10
BLAST match view associations BLAST with tcrX tcrX tcrX Probable transcriptional regulatory protein TcrX	protein from Mycobacterium tuberculosis	4.6e-10
BLAST match view associations BLAST with fleR fleR fleR Sigma-54 dependent DNA-binding response regulator FleR	protein from Pseudomonas protegens Pf-5	4.7e-10
BLAST match view associations BLAST with DET_0135 DET_0135 DET_0135 DNA-binding response regulator	protein from Dehalococcoides ethenogenes 195	5.6e-10
BLAST match view associations BLAST with CPS_1260 CPS_1260 CPS_1260 putative nitrate/nitrite DNA-binding response regulator	protein from Colwellia psychrerythraea 34H	6.6e-10
BLAST match view associations BLAST with zraR zraR zraR	gene from Escherichia coli K-12	6.7e-10
BLAST match view associations BLAST with flrC flrC flrC Flagellar regulatory protein C	protein from Colwellia psychrerythraea 34H	6.8e-10
BLAST match view associations BLAST with CPS_1500 CPS_1500 CPS_1500 flagellar regulatory protein C	protein from Colwellia psychrerythraea 34H	6.8e-10
BLAST match view associations BLAST with CPS_4164 CPS_4164 CPS_4164 response regulator/phosphatase	protein from Colwellia psychrerythraea 34H	6.9e-10
BLAST match view associations BLAST with prrA prrA prrA Transcriptional regulatory protein PrrA	protein from Mycobacterium tuberculosis	7.9e-10
BLAST match view associations BLAST with phoP phoP phoP Putative two component system response transcriptional positive regulator PhoP	protein from Mycobacterium tuberculosis H37Ra	8.2e-10
BLAST match view associations BLAST with phoP phoP phoP Possible two component system response transcriptional positive regulator PhoP	protein from Mycobacterium tuberculosis	8.2e-10
BLAST match view associations BLAST with cheY cheY cheY	gene from Escherichia coli K-12	8.4e-10
BLAST match view associations BLAST with BA_0571 BA_0571 BA_0571 DNA-binding response regulator	protein from Bacillus anthracis str. Ames	8.4e-10
BLAST match view associations BLAST with BA_1497 BA_1497 BA_1497 DNA-binding response regulator ResD	protein from Bacillus anthracis str. Ames	8.9e-10
BLAST match view associations BLAST with BA_1955 BA_1955 BA_1955 DNA-binding response regulator	protein from Bacillus anthracis str. Ames	9.1e-10
BLAST match view associations BLAST with CPS_1750 CPS_1750 CPS_1750 transcriptional regulatory protein CpxR	protein from Colwellia psychrerythraea 34H	9.7e-10
BLAST match view associations BLAST with DET_0170 DET_0170 DET_0170 DNA-binding response regulator	protein from Dehalococcoides ethenogenes 195	1.0e-09
BLAST match view associations BLAST with BA_1312 BA_1312 BA_1312 DNA-binding response regulator	protein from Bacillus anthracis str. Ames	1.1e-09
BLAST match view associations BLAST with DET_0232 DET_0232 DET_0232 DNA-binding response regulator	protein from Dehalococcoides ethenogenes 195	1.2e-09
BLAST match view associations BLAST with APRR2 APRR2 APRR2 AT4G18020	protein from Arabidopsis thaliana	1.5e-09
BLAST match view associations BLAST with rr8 rr8 rr8 Type A response regulator 8	protein from Oryza sativa Indica Group	1.8e-09
BLAST match view associations BLAST with trcR trcR trcR Two component transcriptional regulator TrcR	protein from Mycobacterium tuberculosis	2.2e-09
BLAST match view associations BLAST with CJE_1261 CJE_1261 CJE_1261 chemotaxis protein CheY	protein from Campylobacter jejuni RM1221	2.9e-09
BLAST match view associations BLAST with GSU_2219 GSU_2219 GSU_2219 response regulator	protein from Geobacter sulfurreducens PCA	2.9e-09
BLAST match view associations BLAST with GSU_1989 GSU_1989 GSU_1989 sigma-54 dependent DNA-binding response regulator	protein from Geobacter sulfurreducens PCA	3.0e-09
BLAST match view associations BLAST with CJE_1358 CJE_1358 CJE_1358 DNA-binding response regulator	protein from Campylobacter jejuni RM1221	3.1e-09
BLAST match view associations BLAST with SPO_0251 SPO_0251 SPO_0251 DNA-binding response regulator PetR	protein from Ruegeria pomeroyi DSS-3	3.2e-09
BLAST match view associations BLAST with barA barA barA	gene from Escherichia coli K-12	3.3e-09
BLAST match view associations BLAST with GSU_0451 GSU_0451 GSU_0451 DNA-binding response regulator	protein from Geobacter sulfurreducens PCA	3.3e-09
BLAST match view associations BLAST with cheY2 cheY2 cheY2 Chemotaxis protein CheY	protein from Carboxydothermus hydrogenoformans Z-2901	3.6e-09
BLAST match view associations BLAST with CHY_1032 CHY_1032 CHY_1032 chemotaxis protein CheY	protein from Carboxydothermus hydrogenoformans Z-2901	3.6e-09
BLAST match view associations BLAST with rprY rprY rprY Transcriptional regulatory protein RprY	protein from Bacteroides fragilis YCH46	4.4e-09
BLAST match view associations BLAST with VC_0622 VC_0622 VC_0622 Sensory box sensor histidine kinase/response regulator	protein from Vibrio cholerae O1 biovar El Tor str. N16961	4.5e-09
BLAST match view associations BLAST with VC_0622 VC_0622 VC_0622 sensory box sensor histidine kinase/response regulator	protein from Vibrio cholerae O1 biovar El Tor	4.5e-09
BLAST match view associations BLAST with SO_0622 SO_0622 SO_0622 DNA-binding response regulator	protein from Shewanella oneidensis MR-1	4.5e-09
BLAST match view associations BLAST with DET_1540 DET_1540 DET_1540 DNA-binding response regulator	protein from Dehalococcoides ethenogenes 195	4.6e-09
BLAST match view associations BLAST with rr1 rr1 rr1 Type A response regulator 1	protein from Oryza sativa Indica Group	5.3e-09
BLAST match view associations BLAST with GSU_1495 GSU_1495 GSU_1495 sigma-54 dependent DNA-binding response regulator	protein from Geobacter sulfurreducens PCA	5.3e-09
BLAST match view associations BLAST with BA_1877 BA_1877 BA_1877 DNA-binding response regulator	protein from Bacillus anthracis str. Ames	5.4e-09
BLAST match view associations BLAST with VC_1719 VC_1719 VC_1719 DNA-binding response regulator TorR	protein from Vibrio cholerae O1 biovar El Tor str. N16961	5.6e-09
BLAST match view associations BLAST with VC_1719 VC_1719 VC_1719 DNA-binding response regulator TorR	protein from Vibrio cholerae O1 biovar El Tor	5.6e-09
BLAST match view associations BLAST with VC_1050 VC_1050 VC_1050 Response regulator	protein from Vibrio cholerae O1 biovar El Tor str. N16961	5.8e-09
BLAST match view associations BLAST with VC_1050 VC_1050 VC_1050 response regulator	protein from Vibrio cholerae O1 biovar El Tor	5.8e-09
BLAST match view associations BLAST with BA_0651 BA_0651 BA_0651 DNA-binding response regulator	protein from Bacillus anthracis str. Ames	6.0e-09
BLAST match view associations BLAST with APRR6 APRR6 APRR6 AT1G68210	protein from Arabidopsis thaliana	6.8e-09
BLAST match view associations BLAST with BA_5106 BA_5106 BA_5106 DNA-binding response regulator	protein from Bacillus anthracis str. Ames	7.0e-09
BLAST match view associations BLAST with cheY2 cheY2 cheY2 Chemotaxis protein CheY	protein from Pseudomonas syringae pv. phaseolicola 1448A	7.6e-09
BLAST match view associations BLAST with BA_4833 BA_4833 BA_4833 DNA-binding response regulator PhoP	protein from Bacillus anthracis str. Ames	8.0e-09
BLAST match view associations BLAST with SO_4388 SO_4388 SO_4388 DNA-binding response regulator	protein from Shewanella oneidensis MR-1	8.2e-09
BLAST match view associations BLAST with mtrA mtrA mtrA DNA-binding response regulator MtrA	protein from Mycobacterium tuberculosis	8.4e-09
BLAST match view associations BLAST with GSU_1003 GSU_1003 GSU_1003 nitrogen regulation protein NR(I)	protein from Geobacter sulfurreducens PCA	9.4e-09
BLAST match view associations BLAST with VC_2065 VC_2065 VC_2065 Chemotaxis protein CheY	protein from Vibrio cholerae O1 biovar El Tor str. N16961	9.7e-09
BLAST match view associations BLAST with VC_2065 VC_2065 VC_2065 chemotaxis protein CheY	protein from Vibrio cholerae O1 biovar El Tor	9.7e-09
BLAST match view associations BLAST with tcrA tcrA tcrA Transcriptional regulatory protein TcrA	protein from Mycobacterium tuberculosis	9.9e-09
BLAST match view associations BLAST with rr2 rr2 rr2 Type A response regulator 2	protein from Oryza sativa Indica Group	1.1e-08
BLAST match view associations BLAST with dhkL dhkL dhkL histidine kinase L	gene from Dictyostelium discoideum	1.1e-08
BLAST match view associations BLAST with BA_4777 BA_4777 BA_4777 DNA-binding response regulator	protein from Bacillus anthracis str. Ames	1.2e-08
BLAST match view associations BLAST with GSU_1671 GSU_1671 GSU_1671 response regulator/GGDEF domain protein	protein from Geobacter sulfurreducens PCA	1.2e-08
BLAST match view associations BLAST with BA_2561 BA_2561 BA_2561 DNA-binding response regulator	protein from Bacillus anthracis str. Ames	1.2e-08
BLAST match view associations BLAST with SPO_3037 SPO_3037 SPO_3037 DNA-binding response regulator, LysR family	protein from Ruegeria pomeroyi DSS-3	1.2e-08
BLAST match view associations BLAST with BA_0271 BA_0271 BA_0271 DNA-binding response regulator	protein from Bacillus anthracis str. Ames	1.2e-08
BLAST match view associations BLAST with TM_0468 TM_0468 TM_0468 Response regulator	protein from Thermotoga maritima MSB8	1.2e-08
BLAST match view associations BLAST with CHY_2567 CHY_2567 CHY_2567 DNA-binding response regulator	protein from Carboxydothermus hydrogenoformans Z-2901	1.3e-08
BLAST match view associations BLAST with GSU_2946 GSU_2946 GSU_2946 DNA-binding heavy metal response regulator	protein from Geobacter sulfurreducens PCA	1.3e-08
BLAST match view associations BLAST with CHY_1855 CHY_1855 CHY_1855 sigma-54 dependent transcriptional regulator/response regulator	protein from Carboxydothermus hydrogenoformans Z-2901	1.3e-08
BLAST match view associations BLAST with glrR glrR glrR GlrR DNA-binding transcriptional activator	protein from Escherichia coli K-12	1.3e-08
BLAST match view associations BLAST with GSU_0008 GSU_0008 GSU_0008 sensory box histidine kinase/response regulator	protein from Geobacter sulfurreducens PCA	1.3e-08
BLAST match view associations BLAST with CHY_1413 CHY_1413 CHY_1413 DNA-binding response regulator	protein from Carboxydothermus hydrogenoformans Z-2901	1.5e-08
BLAST match view associations BLAST with CPS_1426 CPS_1426 CPS_1426 transcriptional regulatory protein RstA	protein from Colwellia psychrerythraea 34H	1.6e-08
BLAST match view associations BLAST with cheY cheY cheY Chemotaxis signal transduction system response regulator CheY	protein from Shewanella oneidensis MR-1	1.6e-08
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029986
        (184 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp...   484  7.7e-50   2
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp...   481  1.3e-49   2
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"...   476  2.7e-45   1
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ...   445  5.2e-42   1
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ...   434  7.5e-41   1
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ...   427  4.2e-40   1
TAIR|locus:2155954 - symbol:APRR4 "pseudo-response regula...   271  1.4e-23   1
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ...   258  3.4e-22   1
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re...   258  3.4e-22   1
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat...   204  1.0e-15   1
TIGR_CMR|CPS_4272 - symbol:CPS_4272 "sigma-54 dependent r...   177  8.4e-13   1
DICTYBASE|DDB_G0284331 - symbol:regA "response regulator ...   178  1.7e-12   1
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO...   176  1.9e-12   1
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat...   177  1.9e-12   1
TIGR_CMR|GSU_2693 - symbol:GSU_2693 "response regulator" ...   162  5.0e-12   1
UNIPROTKB|P14376 - symbol:rcsC "RcsC sensory histidine ki...   171  1.2e-11   1
TIGR_CMR|BA_0585 - symbol:BA_0585 "DNA-binding response r...   156  2.2e-11   1
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ...   155  2.8e-11   1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ...   155  2.8e-11   1
TIGR_CMR|SPO_1679 - symbol:SPO_1679 "DNA-binding response...   155  2.8e-11   1
TIGR_CMR|BA_0287 - symbol:BA_0287 "DNA-binding response r...   151  7.4e-11   1
TIGR_CMR|BA_3900 - symbol:BA_3900 "lantibiotic biosynthes...   151  7.4e-11   1
TIGR_CMR|SO_2426 - symbol:SO_2426 "DNA-binding response r...   151  7.4e-11   1
TIGR_CMR|BA_1119 - symbol:BA_1119 "DNA-binding response r...   148  1.5e-10   1
TIGR_CMR|BA_3229 - symbol:BA_3229 "DNA-binding response r...   146  2.5e-10   1
TIGR_CMR|CPS_2786 - symbol:CPS_2786 "response regulator" ...   147  2.5e-10   1
UNIPROTKB|O53894 - symbol:mprA "Response regulator MprA" ...   145  3.2e-10   1
TIGR_CMR|CJE_1397 - symbol:CJE_1397 "DNA-binding response...   145  3.2e-10   1
UNIPROTKB|Q3JZR1 - symbol:csrR "DNA-binding response regu...   144  4.1e-10   1
TIGR_CMR|CHY_0606 - symbol:CHY_0606 "DNA-binding response...   144  4.1e-10   1
UNIPROTKB|O69730 - symbol:tcrX "Probable transcriptional ...   144  4.6e-10   1
UNIPROTKB|Q4KG71 - symbol:fleR "Sigma-54 dependent DNA-bi...   138  4.7e-10   2
TIGR_CMR|DET_0135 - symbol:DET_0135 "DNA-binding response...   143  5.6e-10   1
TIGR_CMR|CPS_1260 - symbol:CPS_1260 "putative nitrate/nit...   142  6.6e-10   1
UNIPROTKB|P14375 - symbol:zraR species:83333 "Escherichia...   150  6.7e-10   1
UNIPROTKB|Q485M3 - symbol:flrC "Flagellar regulatory prot...   150  6.8e-10   1
TIGR_CMR|CPS_1500 - symbol:CPS_1500 "flagellar regulatory...   150  6.8e-10   1
TIGR_CMR|CPS_4164 - symbol:CPS_4164 "response regulator/p...   148  6.9e-10   1
UNIPROTKB|P0A5Z6 - symbol:prrA "Transcriptional regulator...   142  7.9e-10   1
UNIPROTKB|A5U0E5 - symbol:phoP "Putative two component sy...   143  8.2e-10   1
UNIPROTKB|P71814 - symbol:phoP "Possible two component sy...   143  8.2e-10   1
UNIPROTKB|P0AE67 - symbol:cheY species:83333 "Escherichia...   141  8.4e-10   1
TIGR_CMR|BA_0571 - symbol:BA_0571 "DNA-binding response r...   141  8.4e-10   1
TIGR_CMR|BA_1497 - symbol:BA_1497 "DNA-binding response r...   142  8.9e-10   1
TIGR_CMR|BA_1955 - symbol:BA_1955 "DNA-binding response r...   141  9.1e-10   1
TIGR_CMR|CPS_1750 - symbol:CPS_1750 "transcriptional regu...   142  9.7e-10   1
TIGR_CMR|DET_0170 - symbol:DET_0170 "DNA-binding response...   141  1.0e-09   1
TIGR_CMR|BA_1312 - symbol:BA_1312 "DNA-binding response r...   140  1.1e-09   1
TIGR_CMR|DET_0232 - symbol:DET_0232 "DNA-binding response...   140  1.2e-09   1
TAIR|locus:2141020 - symbol:APRR2 species:3702 "Arabidops...   148  1.5e-09   1
UNIPROTKB|Q4GZK3 - symbol:rr8 "Type A response regulator ...   138  1.8e-09   1
UNIPROTKB|Q50806 - symbol:trcR "Response regulator homolo...   140  2.2e-09   1
TIGR_CMR|CJE_1261 - symbol:CJE_1261 "chemotaxis protein C...   136  2.9e-09   1
TIGR_CMR|GSU_2219 - symbol:GSU_2219 "response regulator" ...   136  2.9e-09   1
TIGR_CMR|GSU_1989 - symbol:GSU_1989 "sigma-54 dependent D...   144  3.0e-09   1
TIGR_CMR|CJE_1358 - symbol:CJE_1358 "DNA-binding response...   136  3.1e-09   1
TIGR_CMR|SPO_0251 - symbol:SPO_0251 "DNA-binding response...   137  3.2e-09   1
UNIPROTKB|P0AEC5 - symbol:barA species:83333 "Escherichia...   148  3.3e-09   1
TIGR_CMR|GSU_0451 - symbol:GSU_0451 "DNA-binding response...   136  3.3e-09   1
UNIPROTKB|Q3ADA5 - symbol:cheY2 "Chemotaxis protein CheY"...   135  3.6e-09   1
TIGR_CMR|CHY_1032 - symbol:CHY_1032 "chemotaxis protein C...   135  3.6e-09   1
UNIPROTKB|Q9AE24 - symbol:rprY "Transcriptional regulator...   136  4.4e-09   1
UNIPROTKB|Q9KUA1 - symbol:VC_0622 "Sensory box sensor his...   148  4.5e-09   1
TIGR_CMR|VC_0622 - symbol:VC_0622 "sensory box sensor his...   148  4.5e-09   1
TIGR_CMR|SO_0622 - symbol:SO_0622 "DNA-binding response r...   135  4.5e-09   1
TIGR_CMR|DET_1540 - symbol:DET_1540 "DNA-binding response...   135  4.6e-09   1
UNIPROTKB|Q4GZL0 - symbol:rr1 "Type A response regulator ...   135  5.3e-09   1
TIGR_CMR|GSU_1495 - symbol:GSU_1495 "sigma-54 dependent D...   142  5.3e-09   1
TIGR_CMR|BA_1877 - symbol:BA_1877 "DNA-binding response r...   135  5.4e-09   1
UNIPROTKB|Q9KRC3 - symbol:VC_1719 "DNA-binding response r...   135  5.6e-09   1
TIGR_CMR|VC_1719 - symbol:VC_1719 "DNA-binding response r...   135  5.6e-09   1
UNIPROTKB|Q9KT55 - symbol:VC_1050 "Response regulator" sp...   140  5.8e-09   1
TIGR_CMR|VC_1050 - symbol:VC_1050 "response regulator" sp...   140  5.8e-09   1
TIGR_CMR|BA_0651 - symbol:BA_0651 "DNA-binding response r...   134  6.0e-09   1
TAIR|locus:2199342 - symbol:APRR6 "pseudo-response regula...   144  6.8e-09   1
TIGR_CMR|BA_5106 - symbol:BA_5106 "DNA-binding response r...   134  7.0e-09   1
UNIPROTKB|Q48GG3 - symbol:cheY2 "Chemotaxis protein CheY"...   132  7.6e-09   1
TIGR_CMR|BA_4833 - symbol:BA_4833 "DNA-binding response r...   134  8.0e-09   1
TIGR_CMR|SO_4388 - symbol:SO_4388 "DNA-binding response r...   133  8.2e-09   1
UNIPROTKB|P0A5Z4 - symbol:mtrA "DNA-binding response regu...   133  8.4e-09   1
TIGR_CMR|GSU_1003 - symbol:GSU_1003 "nitrogen regulation ...   140  9.4e-09   1
UNIPROTKB|Q9KQD5 - symbol:VC_2065 "Chemotaxis protein Che...   131  9.7e-09   1
TIGR_CMR|VC_2065 - symbol:VC_2065 "chemotaxis protein Che...   131  9.7e-09   1
UNIPROTKB|O07776 - symbol:tcrA "Transcriptional regulator...   134  9.9e-09   1
UNIPROTKB|Q4GZK9 - symbol:rr2 "Type A response regulator ...   113  1.1e-08   2
DICTYBASE|DDB_G0282927 - symbol:dhkL "histidine kinase L"...   146  1.1e-08   1
TIGR_CMR|BA_4777 - symbol:BA_4777 "DNA-binding response r...   132  1.2e-08   1
TIGR_CMR|GSU_1671 - symbol:GSU_1671 "response regulator/G...   136  1.2e-08   1
TIGR_CMR|BA_2561 - symbol:BA_2561 "DNA-binding response r...   132  1.2e-08   1
TIGR_CMR|SPO_3037 - symbol:SPO_3037 "DNA-binding response...   134  1.2e-08   1
TIGR_CMR|BA_0271 - symbol:BA_0271 "DNA-binding response r...   132  1.2e-08   1
UNIPROTKB|Q9WYT9 - symbol:TM_0468 "Response regulator" sp...   130  1.2e-08   1
TIGR_CMR|CHY_2567 - symbol:CHY_2567 "DNA-binding response...   132  1.3e-08   1
TIGR_CMR|GSU_2946 - symbol:GSU_2946 "DNA-binding heavy me...   131  1.3e-08   1
TIGR_CMR|CHY_1855 - symbol:CHY_1855 "sigma-54 dependent t...   138  1.3e-08   1
UNIPROTKB|P0AFU4 - symbol:glrR "GlrR DNA-binding transcri...   138  1.3e-08   1
TIGR_CMR|GSU_0008 - symbol:GSU_0008 "sensory box histidin...   139  1.3e-08   1
TIGR_CMR|CHY_1413 - symbol:CHY_1413 "DNA-binding response...   131  1.5e-08   1
TIGR_CMR|CPS_1426 - symbol:CPS_1426 "transcriptional regu...   132  1.6e-08   1
UNIPROTKB|Q8EF67 - symbol:cheY "Chemotaxis signal transdu...   129  1.6e-08   1

WARNING:  Descriptions of 277 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2093668 [details] [associations]
            symbol:RR1 "response regulator 1" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=ISS;IDA]
            [GO:0009736 "cytokinin mediated signaling pathway"
            evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
            evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0010380 "regulation of chlorophyll biosynthetic process"
            evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
            process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
            evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
            [GO:0006487 "protein N-linked glycosylation" evidence=RCA]
            [GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
            "regulation of seed germination" evidence=RCA] [GO:0010043
            "response to zinc ion" evidence=RCA] [GO:0016558 "protein import
            into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
            shoot system development" evidence=RCA] InterPro:IPR001005
            InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
            PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
            GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
            TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
            GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
            EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
            IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
            RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
            ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
            PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
            KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
            HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
            ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
            Uniprot:Q940D0
        Length = 690

 Score = 484 (175.4 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
 Identities = 91/127 (71%), Positives = 108/127 (85%)

Query:    10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
             V + FP+GLRVLVVDDDP  L ILE+MLR CLYEVTKCNRAE+AL +LR +K+G+DIVIS
Sbjct:    29 VVEMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVIS 88

Query:    70 DVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
             DVHMPDMDGFKL E VGLEMDLPVIMMS D     V+KGVTHGA +YL+KP+R++ L+NI
Sbjct:    89 DVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNI 148

Query:   130 WQHVAQQ 136
             WQHV ++
Sbjct:   149 WQHVVRK 155

 Score = 52 (23.4 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
 Identities = 17/46 (36%), Positives = 22/46 (47%)

Query:   144 DDSYSVNQGN-WRTSNXXXXXXXXXXXXXX----TSTLKKPRFLVS 184
             D+S SVN+GN WR+S+                   S LKKPR + S
Sbjct:   198 DNSSSVNEGNNWRSSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWS 243


>TAIR|locus:2130095 [details] [associations]
            symbol:RR2 "response regulator 2" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=ISS;IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
            mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
            to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
            cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
            evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
            evidence=IMP] [GO:0010119 "regulation of stomatal movement"
            evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
            [GO:0010029 "regulation of seed germination" evidence=RCA]
            [GO:0031537 "regulation of anthocyanin metabolic process"
            evidence=RCA] [GO:0048831 "regulation of shoot system development"
            evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
            InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
            SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
            SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
            InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
            eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
            ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
            EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
            EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
            PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
            ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
            PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
            KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
            OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
            GermOnline:AT4G16110 Uniprot:Q9ZWJ9
        Length = 664

 Score = 481 (174.4 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
 Identities = 92/128 (71%), Positives = 105/128 (82%)

Query:    11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
             SD FPA LRVLVVDDDP  L ILE+ML  CLY VTKCNRAE AL +LR +KNG+DIVISD
Sbjct:    21 SDPFPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISD 80

Query:    71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
             VHMPDMDGFKL E VGLEMDLPVIMMS D     V+KGVTHGA +YL+KP+RI+ L+NIW
Sbjct:    81 VHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIW 140

Query:   131 QHVAQQPK 138
             QHV ++ +
Sbjct:   141 QHVVRKKR 148

 Score = 53 (23.7 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query:   135 QQPKPFEESDD-SYSVNQGNWRTSNXXXXXXXXXXXXXX--TSTLKKPRFLVS 184
             +Q +  E++D+ S SVN+GN R+S                 +S+LKKPR + S
Sbjct:   170 RQQQHREDADNNSSSVNEGNGRSSRKRKEEEVDDQGDDKEDSSSLKKPRVVWS 222


>TAIR|locus:2008585 [details] [associations]
            symbol:ARR11 "response regulator 11" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=ISS;IDA]
            [GO:0009736 "cytokinin mediated signaling pathway"
            evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
            evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
            SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
            PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
            PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
            EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
            RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
            SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
            GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
            HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
            ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
            Uniprot:Q9FXD6
        Length = 521

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 95/131 (72%), Positives = 106/131 (80%)

Query:    15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
             P GLRVLVVDDDP WL+ILEKML+KC YEVT C  A  AL +LR  K+GYDIVISDV+MP
Sbjct:     8 PVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMP 67

Query:    75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
             DMDGFKL E VGLE+DLPVIMMSVDG T  VMKGV HGAC+YLLKPIR+KEL+ IWQHV 
Sbjct:    68 DMDGFKLLEHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVL 127

Query:   135 QQPKPFEESDD 145
             +  K  +E  D
Sbjct:   128 R--KKLQEVRD 136


>TAIR|locus:2116587 [details] [associations]
            symbol:RR10 "response regulator 10" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=ISS;IDA]
            [GO:0009736 "cytokinin mediated signaling pathway"
            evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
            evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
            process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
            metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
            development" evidence=IGI] [GO:0080022 "primary root development"
            evidence=IGI] [GO:0010029 "regulation of seed germination"
            evidence=RCA] [GO:0048831 "regulation of shoot system development"
            evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
            InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
            SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
            GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
            GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
            TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
            EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
            PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
            ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
            PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
            KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
            HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
            ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
            Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
            InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
        Length = 552

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 87/151 (57%), Positives = 113/151 (74%)

Query:     8 VAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIV 67
             + V DQFP G+RVL VDDD   LRIL+ +L++C Y VT  N+A+ AL++LR +KN +D+V
Sbjct:     7 IEVLDQFPVGMRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLV 66

Query:    68 ISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
             ISDV MPDMDGFKL E VGLEMDLPVIM+S     + VMKGV HGAC+YLLKP+RI+EL+
Sbjct:    67 ISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELK 126

Query:   128 NIWQHVAQQPKPFEESDDSYSVNQGNWRTSN 158
             NIWQHV ++ K  +++  + S   GN   +N
Sbjct:   127 NIWQHVVRKSK-LKKNKSNVSNGSGNCDKAN 156


>TAIR|locus:2040194 [details] [associations]
            symbol:RR12 "response regulator 12" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=ISS] [GO:0009736
            "cytokinin mediated signaling pathway" evidence=IGI;TAS]
            [GO:0009735 "response to cytokinin stimulus" evidence=IGI]
            [GO:0010380 "regulation of chlorophyll biosynthetic process"
            evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
            process" evidence=IGI] [GO:0048367 "shoot system development"
            evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
            InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
            GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
            Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
            InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
            PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
            GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
            IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
            ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
            GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
            InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
            Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
        Length = 596

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 83/124 (66%), Positives = 100/124 (80%)

Query:    12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
             DQFP G+RVL VDDD   L+ILE +LR C Y VT  N+A+ AL++LR +KN +D+VISDV
Sbjct:    11 DQFPVGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDV 70

Query:    72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
              MPDMDGFKL E VGLEMDLPVIM+S     + VMKGVTHGAC+YLLKP+RI+EL+NIWQ
Sbjct:    71 DMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQ 130

Query:   132 HVAQ 135
             HV +
Sbjct:   131 HVVR 134


>TAIR|locus:2065398 [details] [associations]
            symbol:RR14 "response regulator 14" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=ISS] [GO:0009736
            "cytokinin mediated signaling pathway" evidence=RCA;TAS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
            protein binding" evidence=IPI] [GO:0010029 "regulation of seed
            germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
            metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
            system development" evidence=RCA] InterPro:IPR001005
            InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
            PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
            InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
            eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
            EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
            PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
            ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
            EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
            GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
            OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
            Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
        Length = 382

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 80/128 (62%), Positives = 106/128 (82%)

Query:    10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
             ++DQFP+GLR+LVVDDD   L ILEKML + +Y+VT C++A++AL +LR  K+ +D+V+S
Sbjct:     3 INDQFPSGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLS 62

Query:    70 DVHMPDMDGFKLHEQVGL-EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
             DVHMP M+G+ L +QVGL EMDLPVIMMSVDG T  VM G+ HGAC+YL+KPIR +EL+N
Sbjct:    63 DVHMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKN 122

Query:   129 IWQHVAQQ 136
             IWQHV ++
Sbjct:   123 IWQHVVRR 130


>TAIR|locus:2155954 [details] [associations]
            symbol:APRR4 "pseudo-response regulator 4" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110
            SMART:SM00448 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
            PROSITE:PS51294 EMBL:AB016872 IPI:IPI00535768 RefSeq:NP_199735.1
            UniGene:At.55447 ProteinModelPortal:Q9FJ16 SMR:Q9FJ16
            EnsemblPlants:AT5G49240.1 GeneID:834984 KEGG:ath:AT5G49240
            GeneFarm:4344 TAIR:At5g49240 eggNOG:NOG265546 HOGENOM:HOG000029456
            InParanoid:Q9FJ16 KO:K14491 OMA:SEIGSEM PhylomeDB:Q9FJ16
            ProtClustDB:CLSN2916474 Genevestigator:Q9FJ16 GermOnline:AT5G49240
            Uniprot:Q9FJ16
        Length = 292

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 53/126 (42%), Positives = 84/126 (66%)

Query:    11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
             S  FP GLRVLV D+DP +L ILE+ L+K  Y+VT CN    A+  LR  +N +D+ +  
Sbjct:    35 SSNFPEGLRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQ 94

Query:    71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
             V+  + D F+   ++G EMDLP+I++S D   + V K + +GA +YL+KPIR ++LR ++
Sbjct:    95 VNNAEGDIFRFLSEIGSEMDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVF 154

Query:   131 QHVAQQ 136
             +H+ ++
Sbjct:   155 KHLVKK 160


>UNIPROTKB|Q7Y0W3 [details] [associations]
            symbol:Q7Y0W3 "Two-component response regulator EHD1"
            species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0048576 "positive regulation of short-day
            photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
            InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
            PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
            GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
            Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
            InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
            eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
            ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
            Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
        Length = 341

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 51/120 (42%), Positives = 76/120 (63%)

Query:    14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
             +P GLRVLV+DDD  +L ++E +L KC Y+VT       A+  +  +    D+VISD   
Sbjct:     7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66

Query:    74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
             P  DG  + ++V  +  +P ++M+  G T  VMK V +GA ++LLKP+RI+EL NIWQH+
Sbjct:    67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126


>UNIPROTKB|Q7Y0W5 [details] [associations]
            symbol:EHD1 "Two-component response regulator EHD1"
            species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
            regulation of short-day photoperiodism, flowering" evidence=IMP]
            InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
            GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
            GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
            EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
            InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
            InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
            EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
            Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
        Length = 341

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 51/120 (42%), Positives = 76/120 (63%)

Query:    14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
             +P GLRVLV+DDD  +L ++E +L KC Y+VT       A+  +  +    D+VISD   
Sbjct:     7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66

Query:    74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
             P  DG  + ++V  +  +P ++M+  G T  VMK V +GA ++LLKP+RI+EL NIWQH+
Sbjct:    67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126


>TAIR|locus:2044376 [details] [associations]
            symbol:PRR9 "pseudo-response regulator 9" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
            evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0009266 "response to temperature stimulus" evidence=IGI]
            [GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
            [GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IDA]
            InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
            PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
            GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
            GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
            GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
            EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
            PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
            ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
            EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
            GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
            KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
            Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
        Length = 468

 Score = 204 (76.9 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 44/120 (36%), Positives = 74/120 (61%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             LRVL+V+ D    +I+  +LRKC Y+V   +    A ++L+   +  D++++++ +P + 
Sbjct:    37 LRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILTELDLPSIS 96

Query:    78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
             GF L   V +E +    +PVIMMS     + V+K +  GA +YL+KP+R  EL+N+WQHV
Sbjct:    97 GFALLALV-MEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHV 155


>TIGR_CMR|CPS_4272 [details] [associations]
            symbol:CPS_4272 "sigma-54 dependent response regulator"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR003593
            InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 PROSITE:PS50045
            PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
            GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 GO:GO:0006351
            GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
            GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
            HOGENOM:HOG000058489 InterPro:IPR025944 PROSITE:PS00688 KO:K07715
            RefSeq:YP_270922.1 ProteinModelPortal:Q47WA0 STRING:Q47WA0
            GeneID:3519601 KEGG:cps:CPS_4272 PATRIC:21471409 OMA:DASVFIQ
            BioCyc:CPSY167879:GI48-4282-MONOMER Uniprot:Q47WA0
        Length = 457

 Score = 177 (67.4 bits), Expect = 8.4e-13, P = 8.4e-13
 Identities = 43/130 (33%), Positives = 71/130 (54%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++L+VDDDP  LR+L   L    Y+V     A+IAL   R+      +VISD+ M  MDG
Sbjct:    14 KILIVDDDPSLLRLLGIRLSAAGYDVESAANAKIALG--RLQNFIPQVVISDLRMEGMDG 71

Query:    79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN-IWQHVAQQ 136
               L EQ+ ++  ++PV++M+  G   D +     G  ++L KP   +EL + + Q +  Q
Sbjct:    72 MALFEQIRIQHPNIPVVIMTAHGTIPDAINATKQGVFSFLTKPFESQELLDTVEQAIRLQ 131

Query:   137 PKPFEESDDS 146
             P   E++ ++
Sbjct:   132 PSQNEKTGET 141


>DICTYBASE|DDB_G0284331 [details] [associations]
            symbol:regA "response regulator receiver
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0030587 "sorocarp development" evidence=IMP] [GO:0051281
            "positive regulation of release of sequestered calcium ion into
            cytosol" evidence=IMP] [GO:0051279 "regulation of release of
            sequestered calcium ion into cytosol" evidence=IMP] [GO:0046058
            "cAMP metabolic process" evidence=IMP] [GO:0031276 "negative
            regulation of lateral pseudopodium assembly" evidence=IMP]
            [GO:0004115 "3',5'-cyclic-AMP phosphodiesterase activity"
            evidence=IDA;IMP] [GO:0005622 "intracellular" evidence=TAS]
            [GO:0006970 "response to osmotic stress" evidence=TAS] [GO:0030435
            "sporulation resulting in formation of a cellular spore"
            evidence=IMP] [GO:0007275 "multicellular organismal development"
            evidence=IMP] [GO:0047555 "3',5'-cyclic-GMP phosphodiesterase
            activity" evidence=IDA] [GO:0006198 "cAMP catabolic process"
            evidence=IDA] [GO:0035556 "intracellular signal transduction"
            evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
            evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0004114 "3',5'-cyclic-nucleotide
            phosphodiesterase activity" evidence=IEA] [GO:0003824 "catalytic
            activity" evidence=IEA] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0000156 "phosphorelay
            response regulator activity" evidence=IEA] [GO:0046872 "metal ion
            binding" evidence=IEA] [GO:0030552 "cAMP binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            InterPro:IPR001789 InterPro:IPR002073 InterPro:IPR003607
            InterPro:IPR023088 InterPro:IPR023174 Pfam:PF00072 Pfam:PF00233
            PRINTS:PR00387 PROSITE:PS00126 PROSITE:PS50110 SMART:SM00448
            SMART:SM00471 dictyBase:DDB_G0284331 GO:GO:0005829
            GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
            GO:GO:0030435 GO:GO:0030587 GO:GO:0005622 GO:GO:0006970
            GO:GO:0051281 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            eggNOG:COG3706 EMBL:AAFI02000064 GO:GO:0030552 GO:GO:0031276
            GO:GO:0004115 GO:GO:0006198 Gene3D:1.10.1300.10 EMBL:U60170
            EMBL:AJ005398 RefSeq:XP_638612.1 ProteinModelPortal:Q23917
            STRING:Q23917 EnsemblProtists:DDB0191479 GeneID:8624583
            KEGG:ddi:DDB_G0284331 OMA:SHYETIC ProtClustDB:CLSZ2728943
            Uniprot:Q23917
        Length = 793

 Score = 178 (67.7 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 48/133 (36%), Positives = 75/133 (56%)

Query:     2 SPASSSVA-VSDQF-PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRM 59
             SP+S  V+  SD++ P+ +R+LV DDD +  +IL  +L+K  Y VT     EIA + +  
Sbjct:   142 SPSSHRVSDFSDEYSPSKVRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINK 201

Query:    60 SKNGYDIVISDVHMPDMDGFKLHEQVG---LEMDLPVIMMSVDGCTQDVMKG---VTHGA 113
              +  YD+V++DV MP + GF L +++    +   +PVI+MS  G   D       +  G 
Sbjct:   202 GQQKYDLVLTDVMMPHITGFDLLQRINDHPVHRHIPVILMS--GTAVDYKYANDTIKIGG 259

Query:   114 CNYLLKPIRIKEL 126
              ++L KPI  KEL
Sbjct:   260 QDFLTKPIA-KEL 271


>TAIR|locus:2163198 [details] [associations]
            symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
            evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
            "transcription, DNA-dependent" evidence=TAS] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IDA]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0010629 "negative regulation of gene expression"
            evidence=IDA] [GO:0009639 "response to red or far red light"
            evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
            evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
            evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
            Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
            GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
            GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
            EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
            RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
            SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
            GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
            eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
            OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
            Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
            Uniprot:Q9LKL2
        Length = 618

 Score = 176 (67.0 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 40/119 (33%), Positives = 65/119 (54%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +R+L+ D+D   L  +  +L +C Y+VT    A   +D L       DI+++++ +P   
Sbjct:    19 VRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIILAEIDLPMAK 78

Query:    78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
             G K+   +  + DL   PVIMMS       V+K +  GA +YL+KP+R  EL N+W H+
Sbjct:    79 GMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNELLNLWTHM 137


>TAIR|locus:2151206 [details] [associations]
            symbol:PRR7 "pseudo-response regulator 7" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
            evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
            pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0009266 "response to temperature stimulus" evidence=IGI]
            [GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0009639 "response to red or far red light" evidence=RCA]
            [GO:0042752 "regulation of circadian rhythm" evidence=RCA]
            [GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
            InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
            PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
            GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
            EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
            PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
            ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
            EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
            GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
            InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
            ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
            GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
        Length = 727

 Score = 177 (67.4 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 44/119 (36%), Positives = 68/119 (57%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +RVL+V++D     I+  +LR C YEV + +    A  +L    N  DIV+++V MP + 
Sbjct:    78 IRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLS 137

Query:    78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
             G  L  ++       ++PVIMMS       V K ++ GA ++L+KPIR  EL+ +WQHV
Sbjct:   138 GIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHV 196


>TIGR_CMR|GSU_2693 [details] [associations]
            symbol:GSU_2693 "response regulator" species:243231
            "Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
            GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
            RefSeq:NP_953738.1 ProteinModelPortal:Q749P9 GeneID:2687548
            KEGG:gsu:GSU2693 PATRIC:22028241 OMA:VEMHRAR
            BioCyc:GSUL243231:GH27-2669-MONOMER Uniprot:Q749P9
        Length = 128

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 43/121 (35%), Positives = 70/121 (57%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             + VL+VDDD  +L +L  +L     EVT  +R   A+D++R  K  +D+VI+D  MP M+
Sbjct:     4 INVLIVDDDVNFLYVLGLLLESKDLEVTSASRGAEAVDIVR--KTTFDMVITDFSMPGMN 61

Query:    78 GFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTH-GACNYLLKPIRIKELRNIWQHVAQ 135
             G +L   V  L  DLPV+M++ +  T D+++  T  G C  L KP+ +  L    +H ++
Sbjct:    62 GLELAAAVKELHPDLPVMMVTCE-VTSDLIEMATDVGICRVLDKPVNVGRLLADIRHFSR 120

Query:   136 Q 136
             +
Sbjct:   121 R 121


>UNIPROTKB|P14376 [details] [associations]
            symbol:rcsC "RcsC sensory histidine kinase" species:83333
            "Escherichia coli K-12" [GO:0018106 "peptidyl-histidine
            phosphorylation" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0000156
            "phosphorelay response regulator activity" evidence=IEA]
            [GO:0023014 "signal transduction by phosphorylation"
            evidence=IEA;IDA] [GO:0035556 "intracellular signal transduction"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0046777
            "protein autophosphorylation" evidence=IMP] [GO:0044010
            "single-species biofilm formation" evidence=IMP] [GO:0071470
            "cellular response to osmotic stress" evidence=IMP] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005886 "plasma membrane"
            evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA;RCA]
            [GO:0016020 "membrane" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
            evidence=IEA;IDA] [GO:0000155 "phosphorelay sensor kinase activity"
            evidence=IEA;IDA] InterPro:IPR000014 InterPro:IPR001789
            InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
            InterPro:IPR009082 InterPro:IPR019017 Pfam:PF00072 Pfam:PF00512
            Pfam:PF02518 Pfam:PF09456 PRINTS:PR00344 PROSITE:PS50110
            PROSITE:PS50112 PROSITE:PS51426 SMART:SM00091 SMART:SM00387
            SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
            GO:GO:0005886 GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
            EMBL:AP009048 GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0005622
            GO:GO:0071470 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
            SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642
            BRENDA:2.7.13.3 GO:GO:0018106 GO:GO:0044010 EMBL:M28242 EMBL:L11272
            PIR:H64991 RefSeq:NP_416722.2 PDB:2AYX PDB:2AYY PDB:2AYZ
            PDBsum:2AYX PDBsum:2AYY PDBsum:2AYZ ProteinModelPortal:P14376
            SMR:P14376 DIP:DIP-10647N IntAct:P14376 MINT:MINT-1267658
            PRIDE:P14376 EnsemblBacteria:EBESCT00000001645
            EnsemblBacteria:EBESCT00000017555 GeneID:948993 KEGG:eco:b2218
            PATRIC:32119795 EchoBASE:EB0815 EcoGene:EG10822
            HOGENOM:HOG000122300 KO:K07677 OMA:HPINRSL ProtClustDB:PRK10841
            BioCyc:EcoCyc:RCSC-MONOMER BioCyc:ECOL316407:JW5917-MONOMER
            BioCyc:ECOL316407:JW5920-MONOMER EvolutionaryTrace:P14376
            Genevestigator:P14376 Uniprot:P14376
        Length = 949

 Score = 171 (65.3 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 46/140 (32%), Positives = 78/140 (55%)

Query:     5 SSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY 64
             S+  AVSD     + +LVVDD PI  R+L   L    Y+    N    AL++L  SKN  
Sbjct:   814 STDKAVSDN--DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNHI 869

Query:    65 DIVISDVHMPDMDGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
             DIV+SDV+MP+MDG++L +++  L + LPVI ++ +   ++  + +  G  + L KP+ +
Sbjct:   870 DIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929

Query:   124 KELRNIWQHVAQQPKPFEES 143
               ++      A++ +   +S
Sbjct:   930 DVIKQTLTLYAERVRKSRDS 949


>TIGR_CMR|BA_0585 [details] [associations]
            symbol:BA_0585 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843119.1
            RefSeq:YP_017209.1 RefSeq:YP_026832.1 ProteinModelPortal:Q81VB2
            DNASU:1087912 EnsemblBacteria:EBBACT00000008912
            EnsemblBacteria:EBBACT00000015521 EnsemblBacteria:EBBACT00000021979
            GeneID:1087912 GeneID:2818661 GeneID:2851974 KEGG:ban:BA_0585
            KEGG:bar:GBAA_0585 KEGG:bat:BAS0554 OMA:YQTDIEY
            ProtClustDB:CLSK2305400 BioCyc:BANT260799:GJAJ-614-MONOMER
            BioCyc:BANT261594:GJ7F-640-MONOMER Uniprot:Q81VB2
        Length = 223

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 35/104 (33%), Positives = 63/104 (60%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRM-SKNGYDIVISDVHMPDM 76
             +++L+VDD+   LR+L+  L    Y    C +A   L+ L++  +  +DI++ DV MP+M
Sbjct:     2 VKILLVDDEERMLRLLDLFLSPRGYF---CMKATSGLEALKLIEQKDFDIILLDVMMPNM 58

Query:    77 DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
             DG+    Q+    ++P+IM++      D++KG+T GA +Y+ KP
Sbjct:    59 DGWDTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKP 102


>UNIPROTKB|Q4GZK5 [details] [associations]
            symbol:rr6 "Type A response regulator 6" species:39946
            "Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
            stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
            GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
            GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
            Gramene:Q4GZK5 Uniprot:Q4GZK5
        Length = 170

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 37/135 (27%), Positives = 73/135 (54%)

Query:     3 PASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK- 61
             P   + A  D+  + + VL VDD  +   ++ K+LR   Y VT    A  AL++L +   
Sbjct:    35 PVVVAAAAGDEAQSEMHVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLCLGLV 94

Query:    62 NGYDIVISDVHMPDMDGFKLHEQV--GLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLL 118
                +++I+D  MP M G++L ++V    ++ ++PV++MS +     + + +  GA ++LL
Sbjct:    95 PNVNMIITDYWMPGMTGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLL 154

Query:   119 KPIRIKELRNIWQHV 133
             KP+R  ++  +   +
Sbjct:   155 KPVRPSDVSRLCSRI 169


>UNIPROTKB|Q4GZK8 [details] [associations]
            symbol:rr3 "Type A response regulator 3" species:39946
            "Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
            stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
            GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
            GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
            STRING:Q4GZK8 Uniprot:Q4GZK8
        Length = 131

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 35/117 (29%), Positives = 69/117 (58%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             VL VDD  +   ++ ++LR   Y VT  +  + AL++L + +N + ++I+D  MP+M GF
Sbjct:    13 VLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLSLDRNVH-MIITDYCMPEMTGF 71

Query:    80 KLHEQV--GLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
              L ++V    E+ ++PV++MS +     + + +  GA ++L+KP+R  ++  +   V
Sbjct:    72 DLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPSDVSRLCNRV 128


>TIGR_CMR|SPO_1679 [details] [associations]
            symbol:SPO_1679 "DNA-binding response regulator CtrA"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
            response regulator activity" evidence=ISS] [GO:0000160
            "phosphorelay signal transduction system" evidence=ISS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034815 RefSeq:YP_166918.1
            ProteinModelPortal:Q5LST7 GeneID:3194546 KEGG:sil:SPO1679
            PATRIC:23376683 KO:K13584 OMA:PDMNGHE ProtClustDB:CLSK863578
            Uniprot:Q5LST7
        Length = 238

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 35/111 (31%), Positives = 67/111 (60%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +R+L+V+DDP   + +E ML      V   +  E  +D+ ++    YD+++ D+++PDM+
Sbjct:     1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKLYD--YDLILLDINLPDMN 58

Query:    78 GFKLHEQVGLE-MDLPVIMMS-VDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G ++  Q+ +  ++ P++++S VD  T+  +KG   GA +YL KP   +EL
Sbjct:    59 GHEVLRQLRMSRIETPILILSGVDD-TESKIKGFGFGADDYLTKPFHREEL 108


>TIGR_CMR|BA_0287 [details] [associations]
            symbol:BA_0287 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
            RefSeq:NP_842837.1 RefSeq:YP_016897.1 RefSeq:YP_026554.1
            ProteinModelPortal:Q81VC5 DNASU:1085878
            EnsemblBacteria:EBBACT00000011028 EnsemblBacteria:EBBACT00000016417
            EnsemblBacteria:EBBACT00000022481 GeneID:1085878 GeneID:2819460
            GeneID:2851280 KEGG:ban:BA_0287 KEGG:bar:GBAA_0287 KEGG:bat:BAS0273
            OMA:NYNLVIL ProtClustDB:CLSK917934
            BioCyc:BANT260799:GJAJ-313-MONOMER
            BioCyc:BANT261594:GJ7F-322-MONOMER Uniprot:Q81VC5
        Length = 237

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 34/109 (31%), Positives = 63/109 (57%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +R+L+ DDD     +L+  L + LY V      E+AL +   ++N Y IVI D+ MP +D
Sbjct:     4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLF--NQNNYSIVILDLMMPKVD 61

Query:    78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G ++  ++  + ++P++M++      D + G++ GA +Y+ KP  I E+
Sbjct:    62 GIEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEV 110


>TIGR_CMR|BA_3900 [details] [associations]
            symbol:BA_3900 "lantibiotic biosynthesis DNA-binding
            response regulator, putative" species:198094 "Bacillus anthracis
            str. Ames" [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0017000 "antibiotic biosynthetic process" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
            GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:Q9WYN0 RefSeq:NP_846147.1
            RefSeq:YP_020538.1 RefSeq:YP_029866.1 ProteinModelPortal:Q81WR8
            DNASU:1087972 EnsemblBacteria:EBBACT00000012233
            EnsemblBacteria:EBBACT00000017950 EnsemblBacteria:EBBACT00000020089
            GeneID:1087972 GeneID:2814840 GeneID:2849516 KEGG:ban:BA_3900
            KEGG:bar:GBAA_3900 KEGG:bat:BAS3613 OMA:TAIVEHI
            ProtClustDB:CLSK907876 BioCyc:BANT260799:GJAJ-3672-MONOMER
            BioCyc:BANT261594:GJ7F-3789-MONOMER Uniprot:Q81WR8
        Length = 220

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 36/119 (30%), Positives = 68/119 (57%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             R+L +DD+   L I++  L K  +EVT  +     L + +     YD+++ DV MP++DG
Sbjct:     3 RILAIDDEDGILYIIKSALEKEGHEVTAVSNP---LTIPKEKFCHYDLILLDVMMPEIDG 59

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR-NIWQHVAQQ 136
             F L +++   +D P++ ++     +D++ G++ G  +Y+ KP  I ELR  +  HV ++
Sbjct:    60 FTLCKEIRDFVDSPIVFLTAKTMEKDLITGLSLGGDDYITKPFGIGELRARVSAHVRRE 118


>TIGR_CMR|SO_2426 [details] [associations]
            symbol:SO_2426 "DNA-binding response regulator"
            species:211586 "Shewanella oneidensis MR-1" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
            EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
            KO:K02483 RefSeq:NP_718016.2 ProteinModelPortal:Q8EEF6
            GeneID:1170140 KEGG:son:SO_2426 PATRIC:23524467 OMA:CLEMSRI
            ProtClustDB:CLSK906726 Uniprot:Q8EEF6
        Length = 227

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 47/127 (37%), Positives = 71/127 (55%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKC--NRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             R+L+VDDDP++   L  +L+   +EV KC  N  E  L  +R      DIV+ D+ MP M
Sbjct:     3 RILLVDDDPLFRVWLTDVLKAQGHEV-KCAVNGVE-GLTCIRSFAP--DIVMLDLVMPQM 58

Query:    77 DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQH 132
             DGF+L +    E   P++M+S     +D ++    GA ++L KP  IKEL    + I + 
Sbjct:    59 DGFELLQ--ARECMTPIMMLSARDNEEDRIRSYELGADDFLTKPFSIKELLVRLQAIERR 116

Query:   133 VAQQPKP 139
             + Q+PKP
Sbjct:   117 LVQRPKP 123


>TIGR_CMR|BA_1119 [details] [associations]
            symbol:BA_1119 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
            RefSeq:NP_843605.1 RefSeq:YP_017739.1 RefSeq:YP_027312.1
            ProteinModelPortal:Q81TY2 DNASU:1089077
            EnsemblBacteria:EBBACT00000010696 EnsemblBacteria:EBBACT00000017772
            EnsemblBacteria:EBBACT00000019871 GeneID:1089077 GeneID:2819546
            GeneID:2850009 KEGG:ban:BA_1119 KEGG:bar:GBAA_1119 KEGG:bat:BAS1040
            OMA:EIDQHSA ProtClustDB:CLSK916099
            BioCyc:BANT260799:GJAJ-1116-MONOMER
            BioCyc:BANT261594:GJ7F-1167-MONOMER Uniprot:Q81TY2
        Length = 234

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 39/135 (28%), Positives = 70/135 (51%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             +L+VDD+   L++L  +L K  +  +T    AE+AL + +  +N YD++I DV +P   G
Sbjct:     6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQ--QNDYDLIILDVMLPGQSG 63

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL-----RNIWQHV 133
             F +   +  + D P+  ++      D + G +HGA +Y+ KP    E+       + +H+
Sbjct:    64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query:   134 AQQPKPFEESDDSYS 148
              +Q  P E+   S S
Sbjct:   124 -KQVMPHEQKAHSSS 137


>TIGR_CMR|BA_3229 [details] [associations]
            symbol:BA_3229 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
            KO:K02483 RefSeq:NP_845535.1 RefSeq:YP_019868.1 RefSeq:YP_029256.1
            ProteinModelPortal:Q81NG7 DNASU:1083819
            EnsemblBacteria:EBBACT00000008287 EnsemblBacteria:EBBACT00000017508
            EnsemblBacteria:EBBACT00000020077 GeneID:1083819 GeneID:2815940
            GeneID:2850665 KEGG:ban:BA_3229 KEGG:bar:GBAA_3229 KEGG:bat:BAS2999
            OMA:ADNHTTP ProtClustDB:CLSK916969
            BioCyc:BANT260799:GJAJ-3061-MONOMER
            BioCyc:BANT261594:GJ7F-3168-MONOMER Uniprot:Q81NG7
        Length = 224

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 34/110 (30%), Positives = 61/110 (55%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +RVL+V+D+     IL K L    Y V  C   E ALD + M+   YD+++ D+ +P ++
Sbjct:     1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMAT--YDLIVLDIMIPGIN 58

Query:    78 GFKLHEQVGLEMDLP-VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G ++ +++  +     V++++      D +KG+  GA +YL+KP    EL
Sbjct:    59 GLQVLQKLRADNHTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDEL 108


>TIGR_CMR|CPS_2786 [details] [associations]
            symbol:CPS_2786 "response regulator" species:167879
            "Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
            GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            SUPFAM:SSF46894 HOGENOM:HOG000034815 KO:K02483 RefSeq:YP_269498.1
            ProteinModelPortal:Q480M1 STRING:Q480M1 GeneID:3518447
            KEGG:cps:CPS_2786 PATRIC:21468611 ProtClustDB:CLSK757256
            BioCyc:CPSY167879:GI48-2847-MONOMER Uniprot:Q480M1
        Length = 243

 Score = 147 (56.8 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 35/110 (31%), Positives = 66/110 (60%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +R+L+V+DD      L++ L +  + V   +R ++AL  L +    +D+VI D+ +PD+D
Sbjct:     1 MRILLVEDDQGLAEALQQSLVREGFVVDHLSRGKLALTALAVPS--HDMVILDLGLPDID 58

Query:    78 GFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G  + +++  +  DLPVI+++        +KG+ +GA +YL KP  ++EL
Sbjct:    59 GLLVLKEIRAKKNDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQEL 108


>UNIPROTKB|O53894 [details] [associations]
            symbol:mprA "Response regulator MprA" species:1773
            "Mycobacterium tuberculosis" [GO:0000160 "phosphorelay signal
            transduction system" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0006950 "response
            to stress" evidence=IEP] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0090034 "regulation of chaperone-mediated protein complex
            assembly" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
            GO:GO:0045892 GO:GO:0045893 GO:GO:0009405 GO:GO:0006950
            EMBL:BX842575 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000160 eggNOG:COG0745
            HOGENOM:HOG000034815 GO:GO:0090034 PIR:A70821 RefSeq:NP_215496.1
            RefSeq:NP_335443.1 RefSeq:YP_006514341.1 HSSP:P0A5Z6
            ProteinModelPortal:O53894 SMR:O53894 PRIDE:O53894
            EnsemblBacteria:EBMYCT00000001458 EnsemblBacteria:EBMYCT00000070763
            GeneID:13319541 GeneID:885038 GeneID:925187 KEGG:mtc:MT1009
            KEGG:mtu:Rv0981 KEGG:mtv:RVBD_0981 PATRIC:18123964
            TubercuList:Rv0981 KO:K07669 OMA:MLMANPR ProtClustDB:CLSK790869
            Uniprot:O53894
        Length = 230

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 42/137 (30%), Positives = 76/137 (55%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCL----YEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
             +R+LVVDDD    R + + LR+ L    Y V   +    ALDM+   +   D ++ DV M
Sbjct:     3 VRILVVDDD----RAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRP--DALVLDVMM 56

Query:    74 PDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
             P +DG ++  Q+ G   DLP+++++      + + G+  GA +YL KP  ++EL    + 
Sbjct:    57 PRLDGLEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRA 116

Query:   133 VAQQPKPFEESDDSYSV 149
             + ++ KP E++ +S ++
Sbjct:   117 LLRRTKP-EDAAESMAM 132


>TIGR_CMR|CJE_1397 [details] [associations]
            symbol:CJE_1397 "DNA-binding response regulator"
            species:195099 "Campylobacter jejuni RM1221" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
            GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0005622 EMBL:CP000025 GenomeReviews:CP000025_GR
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_179383.1
            ProteinModelPortal:Q5HTK2 STRING:Q5HTK2 GeneID:3231903
            KEGG:cjr:CJE1397 PATRIC:20044596 OMA:CREIREK ProtClustDB:CLSK879174
            BioCyc:CJEJ195099:GJC0-1424-MONOMER Uniprot:Q5HTK2
        Length = 223

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/133 (26%), Positives = 74/133 (55%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             + VL+++DDP + ++L + L +   ++T     + AL++      GYD +I D+ +P +D
Sbjct:     2 INVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNV---GIQGYDCLILDLTLPGID 58

Query:    78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
             G ++  ++  + ++P+I+ S  G   D + G+  GA +YL KP   KE+      + ++ 
Sbjct:    59 GLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPYDPKEMYARIMSLIRRT 118

Query:   138 KPFEESDDSYSVN 150
             K  E +++  ++N
Sbjct:   119 KRVEHTNNE-NIN 130


>UNIPROTKB|Q3JZR1 [details] [associations]
            symbol:csrR "DNA-binding response regulator CsrR"
            species:205921 "Streptococcus agalactiae A909" [GO:0005515 "protein
            binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815
            EMBL:CP000114 RefSeq:YP_330242.1 ProteinModelPortal:Q3JZR1
            EnsemblBacteria:EBSTRT00000004344 GeneID:3685998
            GenomeReviews:CP000114_GR KEGG:sak:SAK_1639 PATRIC:19634591
            OMA:LASVWRY ProtClustDB:CLSK634230
            BioCyc:SAGA205921:GHD7-1647-MONOMER Uniprot:Q3JZR1
        Length = 229

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 39/146 (26%), Positives = 75/146 (51%)

Query:    17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             G ++L+++D+    R +   L    Y+V         LD   + K+ +D+++ D+ +P+M
Sbjct:     2 GKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTA-LEKD-FDLILLDLMLPEM 59

Query:    77 DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQH 132
             DGF++  ++  E    ++MM+      D++ G+  GA +Y++KP  I+EL    R I++ 
Sbjct:    60 DGFEITRRLQAEKTTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRR 119

Query:   133 VAQQPKPFEESDDSYSVNQGNWRTSN 158
                + K  +E  DS S    +  T N
Sbjct:   120 QEIETKT-KEKGDSGSFRDLSLNTHN 144


>TIGR_CMR|CHY_0606 [details] [associations]
            symbol:CHY_0606 "DNA-binding response regulator"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
            Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
            GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
            GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_359462.1
            ProteinModelPortal:Q3AEH2 STRING:Q3AEH2 GeneID:3728152
            KEGG:chy:CHY_0606 PATRIC:21274355
            BioCyc:CHYD246194:GJCN-606-MONOMER Uniprot:Q3AEH2
        Length = 226

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 33/108 (30%), Positives = 59/108 (54%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++LVV+DD    + L  +L+   Y+  +    E A++     +  +D+VI D+++P  DG
Sbjct:     3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVE--HFYRENFDLVILDLNLPKQDG 60

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             F + +++    D+PVI+++  G   D + G T G  +YL KP    EL
Sbjct:    61 FSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAEL 108


>UNIPROTKB|O69730 [details] [associations]
            symbol:tcrX "Probable transcriptional regulatory protein
            TcrX" species:1773 "Mycobacterium tuberculosis" [GO:0005515
            "protein binding" evidence=IPI] [GO:0010106 "cellular response to
            iron ion starvation" evidence=IEP] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
            GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677 EMBL:BX842584
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0010106
            HOGENOM:HOG000034815 HSSP:Q9WYN0 KO:K02483 EMBL:X99370 PIR:F70801
            RefSeq:NP_218282.1 RefSeq:YP_006517260.1 ProteinModelPortal:O69730
            SMR:O69730 EnsemblBacteria:EBMYCT00000002612 GeneID:13317384
            GeneID:886100 KEGG:mtu:Rv3765c KEGG:mtv:RVBD_3765c PATRIC:18156979
            TubercuList:Rv3765c OMA:TELLSMA ProtClustDB:CLSK792706
            Uniprot:O69730
        Length = 234

 Score = 144 (55.7 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 34/108 (31%), Positives = 57/108 (52%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             VLVVDD+P+   ++   LR   + +T       A+   R  +   D+V+ DV +PDM G 
Sbjct:    11 VLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRP--DVVVLDVMLPDMSGL 68

Query:    80 K-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
               LH+       LPV++++     +D + G+T G  +Y+ KP  I+E+
Sbjct:    69 DVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEV 116


>UNIPROTKB|Q4KG71 [details] [associations]
            symbol:fleR "Sigma-54 dependent DNA-binding response
            regulator FleR" species:220664 "Pseudomonas protegens Pf-5"
            [GO:0007155 "cell adhesion" evidence=ISS] [GO:0030092 "regulation
            of flagellum assembly" evidence=ISS] InterPro:IPR001789
            InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
            InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
            PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
            SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
            GO:GO:0007155 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
            Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
            GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
            HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
            InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
            GO:GO:0030092 KO:K10943 OMA:FQMIIDT ProtClustDB:CLSK866333
            RefSeq:YP_258762.1 ProteinModelPortal:Q4KG71 STRING:Q4KG71
            GeneID:3477220 KEGG:pfl:PFL_1636 PATRIC:19872501
            BioCyc:PFLU220664:GIX8-1644-MONOMER Uniprot:Q4KG71
        Length = 468

 Score = 138 (53.6 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
 Identities = 35/116 (30%), Positives = 63/116 (54%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             ++VL+V+DD      L   L    ++      AE AL+ +  +   + +V+SDV+MP MD
Sbjct:     3 IKVLLVEDDRALREALADTLLLAGHDYKAVGSAEEALEAV--AAEPFSLVVSDVNMPGMD 60

Query:    78 GFKLHEQVGL----EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
             G   H+ +GL    +  LPV++M+  G  +  ++ +  GA +YL+KP   + L ++
Sbjct:    61 G---HQLLGLLRARQPQLPVLLMTAHGAVERAVEAMRQGAADYLVKPFEPRALLDL 113

 Score = 35 (17.4 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query:   133 VAQQPKPFEESD 144
             +A QP  FE++D
Sbjct:   211 IAAQPGKFEQAD 222


>TIGR_CMR|DET_0135 [details] [associations]
            symbol:DET_0135 "DNA-binding response regulator"
            species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
            Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
            GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
            GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483
            RefSeq:YP_180885.1 ProteinModelPortal:Q3ZA64 STRING:Q3ZA64
            GeneID:3230499 KEGG:det:DET0135 PATRIC:21607359 OMA:CYNLAKE
            ProtClustDB:CLSK837603 BioCyc:DETH243164:GJNF-135-MONOMER
            Uniprot:Q3ZA64
        Length = 230

 Score = 143 (55.4 bits), Expect = 5.6e-10, P = 5.6e-10
 Identities = 38/108 (35%), Positives = 57/108 (52%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++LVV+DD     +L   L K  Y++        AL M R  K    +VI DV +P MDG
Sbjct:     5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKPS--LVILDVMLPGMDG 62

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             F+L   +  E  +P++M++      D + G+  GA +YL KP  +KEL
Sbjct:    63 FELCRLIRAESSVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKEL 110


>TIGR_CMR|CPS_1260 [details] [associations]
            symbol:CPS_1260 "putative nitrate/nitrite DNA-binding
            response regulator" species:167879 "Colwellia psychrerythraea 34H"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISS]
            InterPro:IPR000792 InterPro:IPR001789 InterPro:IPR016032
            Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038 PROSITE:PS00622
            PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421 SMART:SM00448
            GO:GO:0035556 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:CP000083
            GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 SUPFAM:SSF46894 eggNOG:COG2197 HOGENOM:HOG000034813
            KO:K07684 RefSeq:YP_268003.1 ProteinModelPortal:Q486L2
            STRING:Q486L2 GeneID:3521261 KEGG:cps:CPS_1260 PATRIC:21465757
            OMA:THKRNIK ProtClustDB:CLSK938262
            BioCyc:CPSY167879:GI48-1341-MONOMER Uniprot:Q486L2
        Length = 206

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 34/112 (30%), Positives = 65/112 (58%)

Query:    18 LRVLVVDDDPIWLRILEKMLR--KCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
             ++VL+VDD P++   L+  L    C+  V +    + AL++++     +DIV+ D++MP+
Sbjct:     2 IKVLLVDDHPLFREGLKHRLSLDDCIEVVGEAENGKQALELIKSLD--FDIVLMDINMPE 59

Query:    76 MDGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             MDG  + E +   ++D  V+M+S+    + ++  + HGA  Y+LK +   EL
Sbjct:    60 MDGMYVLELIKEQDLDCKVLMLSMHDNKEYILGAMRHGADGYILKDVPGAEL 111


>UNIPROTKB|P14375 [details] [associations]
            symbol:zraR species:83333 "Escherichia coli K-12"
            [GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA;IGI;IEP;ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0008134 "transcription factor binding" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
            transduction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA;IDA] [GO:0000156 "phosphorelay
            response regulator activity" evidence=IEA;IDA] InterPro:IPR001789
            InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
            InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
            PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
            SMART:SM00448 GO:GO:0005524 GO:GO:0005737 GO:GO:0035556 EMBL:U00096
            EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
            SUPFAM:SSF46689 EMBL:U00006 GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
            InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
            PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
            HOGENOM:HOG000058487 EMBL:M28369 PIR:G65207 RefSeq:NP_418432.1
            RefSeq:YP_491456.1 ProteinModelPortal:P14375 SMR:P14375
            DIP:DIP-9980N PRIDE:P14375 EnsemblBacteria:EBESCT00000003356
            EnsemblBacteria:EBESCT00000015912 GeneID:12933469 GeneID:948505
            KEGG:ecj:Y75_p3192 KEGG:eco:b4004 PATRIC:32123533 EchoBASE:EB0477
            EcoGene:EG10482 KO:K07713 OMA:AEVNAGH ProtClustDB:PRK10365
            BioCyc:EcoCyc:HYDG-MONOMER BioCyc:ECOL316407:JW3968-MONOMER
            Genevestigator:P14375 Uniprot:P14375
        Length = 441

 Score = 150 (57.9 bits), Expect = 6.7e-10, P = 6.7e-10
 Identities = 37/109 (33%), Positives = 59/109 (54%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +LVVDDD     IL+ +LR   Y V   N    AL+ +R  +  +D+V+ DV M +MDG 
Sbjct:     8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR--EQVFDLVLCDVRMAEMDGI 65

Query:    80 K-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
               L E   L   +PV++M+     +  ++ +  GA +YL+KP+    L+
Sbjct:    66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQ 114


>UNIPROTKB|Q485M3 [details] [associations]
            symbol:flrC "Flagellar regulatory protein C" species:167879
            "Colwellia psychrerythraea 34H" [GO:0001539 "ciliary or flagellar
            motility" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0030092 "regulation of flagellum assembly"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0019861 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
            SUPFAM:SSF46689 EMBL:CP000083 GenomeReviews:CP000083_GR
            GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            eggNOG:COG2204 HOGENOM:HOG000058489 InterPro:IPR025943
            InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
            GO:GO:0030092 RefSeq:YP_268242.1 ProteinModelPortal:Q485M3
            STRING:Q485M3 GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207
            KO:K10943 OMA:FRETRND ProtClustDB:CLSK874687
            BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
        Length = 446

 Score = 150 (57.9 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 40/120 (33%), Positives = 60/120 (50%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++LVV+DD      L   L    Y   + +  E AL  L +     DIVISDV M  M G
Sbjct:     5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAAL--LALKSQHVDIVISDVQMGGMSG 62

Query:    79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN-IWQHVAQQ 136
               L + +     +LPV++M+  G   D ++ +  GACNY+ KP   + L N + Q++  Q
Sbjct:    63 LSLLKSIKNHHANLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNMVSQYIPPQ 122


>TIGR_CMR|CPS_1500 [details] [associations]
            symbol:CPS_1500 "flagellar regulatory protein C"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0001539 "ciliary or flagellar motility" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
            of flagellum assembly" evidence=ISS] InterPro:IPR001789
            InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
            InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
            PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
            SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0006355
            GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
            GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
            HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
            PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
            RefSeq:YP_268242.1 ProteinModelPortal:Q485M3 STRING:Q485M3
            GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207 KO:K10943
            OMA:FRETRND ProtClustDB:CLSK874687
            BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
        Length = 446

 Score = 150 (57.9 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 40/120 (33%), Positives = 60/120 (50%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++LVV+DD      L   L    Y   + +  E AL  L +     DIVISDV M  M G
Sbjct:     5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAAL--LALKSQHVDIVISDVQMGGMSG 62

Query:    79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN-IWQHVAQQ 136
               L + +     +LPV++M+  G   D ++ +  GACNY+ KP   + L N + Q++  Q
Sbjct:    63 LSLLKSIKNHHANLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNMVSQYIPPQ 122


>TIGR_CMR|CPS_4164 [details] [associations]
            symbol:CPS_4164 "response regulator/phosphatase"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0016791 "phosphatase activity" evidence=ISS] InterPro:IPR001789
            InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
            PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
            GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
            EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081 eggNOG:COG3437
            Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:YP_270816.1
            ProteinModelPortal:Q47WK6 STRING:Q47WK6 GeneID:3518511
            KEGG:cps:CPS_4164 PATRIC:21471189 OMA:CELIYNA
            BioCyc:CPSY167879:GI48-4174-MONOMER Uniprot:Q47WK6
        Length = 352

 Score = 148 (57.2 bits), Expect = 6.9e-10, P = 6.9e-10
 Identities = 38/107 (35%), Positives = 62/107 (57%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             VL+VDD+   L +L  +LR   Y+V      E+AL +   +KN  DI++ D+ MP MDG+
Sbjct:    16 VLIVDDNSDNLDVLSGVLRP-FYKVKAAINGELALKVAS-AKNKPDIILLDIMMPGMDGY 73

Query:    80 KLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
             ++ +Q+ L     ++PVI ++    T+D   G   GA +Y+ KPI +
Sbjct:    74 EVCQQLKLNPSTANIPVIFVTAKTETKDEEAGFKLGAVDYITKPISV 120


>UNIPROTKB|P0A5Z6 [details] [associations]
            symbol:prrA "Transcriptional regulatory protein PrrA"
            species:1773 "Mycobacterium tuberculosis" [GO:0000287 "magnesium
            ion binding" evidence=IDA] [GO:0005509 "calcium ion binding"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0044110 "growth involved in
            symbiotic interaction" evidence=IDA] [GO:0052572 "response to host
            immune response" evidence=IEP] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0005829 GO:GO:0005886
            GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0000287 GO:GO:0003677
            GO:GO:0005509 GO:GO:0052572 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 EMBL:BX842574 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815 PIR:D70783
            RefSeq:NP_215418.1 RefSeq:NP_335359.1 RefSeq:YP_006514256.1
            PDB:1YS6 PDB:1YS7 PDBsum:1YS6 PDBsum:1YS7 ProteinModelPortal:P0A5Z6
            SMR:P0A5Z6 DIP:DIP-29035N PhosSite:P12061589
            EnsemblBacteria:EBMYCT00000002159 EnsemblBacteria:EBMYCT00000072508
            GeneID:13318807 GeneID:885209 GeneID:926241 KEGG:mtc:MT0926
            KEGG:mtu:Rv0903c KEGG:mtv:RVBD_0903c PATRIC:18123784
            TubercuList:Rv0903c KO:K07671 OMA:VDDRISG ProtClustDB:CLSK790822
            EvolutionaryTrace:P0A5Z6 GO:GO:0044110 Uniprot:P0A5Z6
        Length = 233

 Score = 142 (55.0 bits), Expect = 7.9e-10, P = 7.9e-10
 Identities = 39/110 (35%), Positives = 62/110 (56%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             RVLVVDDD   L  LE+ LR   +EV T  + AE    +   ++N  D ++ D++MP +D
Sbjct:     9 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEA---LRSATENRPDAIVLDINMPVLD 65

Query:    78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G  +   +  ++ D+PV ++S      D + G+  GA +YL+KP  + EL
Sbjct:    66 GVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAEL 115


>UNIPROTKB|A5U0E5 [details] [associations]
            symbol:phoP "Putative two component system response
            transcriptional positive regulator PhoP" species:419947
            "Mycobacterium tuberculosis H37Ra" [GO:0042802 "identical protein
            binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745 EMBL:CP000611
            GenomeReviews:CP000611_GR HOGENOM:HOG000034815 KO:K02483
            RefSeq:YP_001282057.1 ProteinModelPortal:A5U0E5 SMR:A5U0E5
            STRING:A5U0E5 PRIDE:A5U0E5 EnsemblBacteria:EBMYCT00000067475
            GeneID:5215306 KEGG:mra:MRA_0767 PATRIC:18141256 OMA:KPRILDH
            ProtClustDB:CLSK790716 BioCyc:MTUB419947:GJ8N-786-MONOMER
            Uniprot:A5U0E5
        Length = 247

 Score = 143 (55.4 bits), Expect = 8.2e-10, P = 8.2e-10
 Identities = 40/110 (36%), Positives = 63/110 (57%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             RVLVVDD+   + +L   L+   +EV T  N A+ ALD  R ++   D VI DV MP MD
Sbjct:    22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQ-ALDRARETRP--DAVILDVMMPGMD 78

Query:    78 GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             GF +  ++  + +D P + ++     QD + G+T G  +Y+ KP  ++E+
Sbjct:    79 GFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEV 128


>UNIPROTKB|P71814 [details] [associations]
            symbol:phoP "Possible two component system response
            transcriptional positive regulator PhoP" species:1773
            "Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0006979 "response to oxidative stress"
            evidence=IMP] [GO:0009247 "glycolipid biosynthetic process"
            evidence=IMP] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0044315
            "protein secretion by the type VII secretion system" evidence=IMP]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0005886 GO:GO:0045892 GO:GO:0045893
            GO:GO:0009405 GO:GO:0006979 GenomeReviews:AL123456_GR GO:GO:0035556
            GO:GO:0003677 GO:GO:0009247 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005622 EMBL:BX842574 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034815 GO:GO:0044315 KO:K02483
            OMA:KPRILDH ProtClustDB:CLSK790716 EMBL:AL123456 PIR:H70705
            RefSeq:NP_215271.1 RefSeq:YP_006514104.1 PDB:3R0J PDBsum:3R0J
            ProteinModelPortal:P71814 SMR:P71814
            EnsemblBacteria:EBMYCT00000002360 GeneID:13318651 GeneID:888772
            KEGG:mtu:Rv0757 KEGG:mtv:RVBD_0757 PATRIC:18150200
            TubercuList:Rv0757 Uniprot:P71814
        Length = 247

 Score = 143 (55.4 bits), Expect = 8.2e-10, P = 8.2e-10
 Identities = 40/110 (36%), Positives = 63/110 (57%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             RVLVVDD+   + +L   L+   +EV T  N A+ ALD  R ++   D VI DV MP MD
Sbjct:    22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQ-ALDRARETRP--DAVILDVMMPGMD 78

Query:    78 GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             GF +  ++  + +D P + ++     QD + G+T G  +Y+ KP  ++E+
Sbjct:    79 GFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEV 128


>UNIPROTKB|P0AE67 [details] [associations]
            symbol:cheY species:83333 "Escherichia coli K-12"
            [GO:0006473 "protein acetylation" evidence=IDA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=IEA] [GO:0035556 "intracellular signal transduction"
            evidence=IEA] [GO:0060286 "flagellar cell motility" evidence=TAS]
            [GO:0006935 "chemotaxis" evidence=IEA;IMP;TAS] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000287 "magnesium ion binding"
            evidence=IMP] [GO:0000160 "phosphorelay signal transduction system"
            evidence=IEA;IDA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
            SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
            GO:GO:0000287 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0006935 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000160
            PDB:1BDJ PDBsum:1BDJ HOGENOM:HOG000034820 GO:GO:0006473
            GO:GO:0060286 PDB:1A0O PDB:1EAY PDB:1FFG PDB:1FFS PDB:1FFW PDB:2LP4
            PDBsum:1A0O PDBsum:1EAY PDBsum:1FFG PDBsum:1FFS PDBsum:1FFW
            PDBsum:2LP4 EMBL:M13463 EMBL:K02175 PIR:E25195 RefSeq:NP_416396.1
            RefSeq:YP_490144.1 PDB:1AB5 PDB:1AB6 PDB:1C4W PDB:1CEY PDB:1CHN
            PDB:1CYE PDB:1D4Z PDB:1DJM PDB:1E6K PDB:1E6L PDB:1E6M PDB:1EHC
            PDB:1F4V PDB:1FQW PDB:1HEY PDB:1JBE PDB:1KMI PDB:1MIH PDB:1U8T
            PDB:1UDR PDB:1VLZ PDB:1YMU PDB:1YMV PDB:1ZDM PDB:2B1J PDB:2ID7
            PDB:2ID9 PDB:2IDM PDB:3CHY PDB:3F7N PDB:3FFT PDB:3FFW PDB:3FFX
            PDB:3FGZ PDB:3MYY PDB:3OLV PDB:3OLW PDB:3OLX PDB:3OLY PDB:3OO0
            PDB:3OO1 PDB:3RVJ PDB:3RVK PDB:3RVL PDB:3RVM PDB:3RVN PDB:3RVO
            PDB:3RVP PDB:3RVQ PDB:3RVR PDB:3RVS PDB:5CHY PDB:6CHY PDBsum:1AB5
            PDBsum:1AB6 PDBsum:1C4W PDBsum:1CEY PDBsum:1CHN PDBsum:1CYE
            PDBsum:1D4Z PDBsum:1DJM PDBsum:1E6K PDBsum:1E6L PDBsum:1E6M
            PDBsum:1EHC PDBsum:1F4V PDBsum:1FQW PDBsum:1HEY PDBsum:1JBE
            PDBsum:1KMI PDBsum:1MIH PDBsum:1U8T PDBsum:1UDR PDBsum:1VLZ
            PDBsum:1YMU PDBsum:1YMV PDBsum:1ZDM PDBsum:2B1J PDBsum:2ID7
            PDBsum:2ID9 PDBsum:2IDM PDBsum:3CHY PDBsum:3F7N PDBsum:3FFT
            PDBsum:3FFW PDBsum:3FFX PDBsum:3FGZ PDBsum:3MYY PDBsum:3OLV
            PDBsum:3OLW PDBsum:3OLX PDBsum:3OLY PDBsum:3OO0 PDBsum:3OO1
            PDBsum:3RVJ PDBsum:3RVK PDBsum:3RVL PDBsum:3RVM PDBsum:3RVN
            PDBsum:3RVO PDBsum:3RVP PDBsum:3RVQ PDBsum:3RVR PDBsum:3RVS
            PDBsum:5CHY PDBsum:6CHY ProteinModelPortal:P0AE67 SMR:P0AE67
            DIP:DIP-48237N IntAct:P0AE67 SWISS-2DPAGE:P0AE67 PRIDE:P0AE67
            EnsemblBacteria:EBESCT00000000750 EnsemblBacteria:EBESCT00000017790
            GeneID:12930559 GeneID:946393 KEGG:ecj:Y75_p1858 KEGG:eco:b1882
            PATRIC:32119091 EchoBASE:EB0148 EcoGene:EG10150 KO:K03413
            OMA:FGFVISD ProtClustDB:PRK10610 BioCyc:EcoCyc:CHEY-MONOMER
            BioCyc:ECOL316407:JW1871-MONOMER EvolutionaryTrace:P0AE67
            Genevestigator:P0AE67 Uniprot:P0AE67
        Length = 129

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 35/107 (32%), Positives = 59/107 (55%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
             L+ LVVDD     RI+  +L++  +       AE  +D L ++   GY  VISD +MP+M
Sbjct:     6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63

Query:    77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
             DG +L + +   G    LPV+M++ +   ++++     GA  Y++KP
Sbjct:    64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110


>TIGR_CMR|BA_0571 [details] [associations]
            symbol:BA_0571 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
            HOGENOM:HOG000034815 HSSP:P08402 RefSeq:NP_843105.1
            RefSeq:YP_017194.1 RefSeq:YP_026818.1 ProteinModelPortal:Q81YR2
            DNASU:1087909 EnsemblBacteria:EBBACT00000010289
            EnsemblBacteria:EBBACT00000017976 EnsemblBacteria:EBBACT00000019549
            GeneID:1087909 GeneID:2816056 GeneID:2852340 KEGG:ban:BA_0571
            KEGG:bar:GBAA_0571 KEGG:bat:BAS0540 OMA:TQQTIRY
            ProtClustDB:CLSK915864 BioCyc:BANT260799:GJAJ-600-MONOMER
            BioCyc:BANT261594:GJ7F-626-MONOMER Uniprot:Q81YR2
        Length = 223

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 36/112 (32%), Positives = 67/112 (59%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKC-LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             +R+LVV+D+   L  + ++L  C  +EV      E  L  L + +N YD ++ DV MP+M
Sbjct:     1 MRLLVVEDNASLLESIVQIL--CDEFEVDTALNGEDGL-FLAL-QNIYDAILLDVMMPEM 56

Query:    77 DGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
             DGF++ +++  E ++ PV+ ++     +D +KG+  G  +Y++KP +  EL+
Sbjct:    57 DGFEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELK 108


>TIGR_CMR|BA_1497 [details] [associations]
            symbol:BA_1497 "DNA-binding response regulator ResD"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0009060 "aerobic respiration"
            evidence=ISS] [GO:0009061 "anaerobic respiration" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
            GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_843949.1
            RefSeq:YP_018120.1 RefSeq:YP_027655.1 ProteinModelPortal:Q81SZ6
            DNASU:1087158 EnsemblBacteria:EBBACT00000009602
            EnsemblBacteria:EBBACT00000013896 EnsemblBacteria:EBBACT00000020931
            GeneID:1087158 GeneID:2818509 GeneID:2850870 KEGG:ban:BA_1497
            KEGG:bar:GBAA_1497 KEGG:bat:BAS1386 KO:K07775 OMA:VWHYEFF
            ProtClustDB:CLSK873069 BioCyc:BANT260799:GJAJ-1460-MONOMER
            BioCyc:BANT261594:GJ7F-1522-MONOMER Uniprot:Q81SZ6
        Length = 238

 Score = 142 (55.0 bits), Expect = 8.9e-10, P = 8.9e-10
 Identities = 31/108 (28%), Positives = 62/108 (57%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             R+L+VDD+    R+L+  L +  Y + + +  + AL+M    +N YD+++ D+ MP  DG
Sbjct:     6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMAL--QNDYDLILLDLMMPGKDG 63

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
              ++ + V  +   P+IM++  G   + ++G   G  +Y++KP   +E+
Sbjct:    64 IEVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREV 111


>TIGR_CMR|BA_1955 [details] [associations]
            symbol:BA_1955 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
            EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
            GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_844363.1
            RefSeq:YP_018600.2 ProteinModelPortal:Q81RT3 DNASU:1085997
            EnsemblBacteria:EBBACT00000011147 EnsemblBacteria:EBBACT00000016377
            GeneID:1085997 GeneID:2817674 KEGG:ban:BA_1955 KEGG:bar:GBAA_1955
            PATRIC:18781506 OMA:FLECEGF ProtClustDB:CLSK916430
            BioCyc:BANT261594:GJ7F-1959-MONOMER Uniprot:Q81RT3
        Length = 228

 Score = 141 (54.7 bits), Expect = 9.1e-10, P = 9.1e-10
 Identities = 40/125 (32%), Positives = 68/125 (54%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDMDG 78
             +L+VDDDP  +R L  +  +C  E  +   A   LD L ++++   D+VI D+ MP+MDG
Sbjct:     8 ILIVDDDP-HIRELVSVFLEC--EGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDG 64

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP-------IRIKELRNIWQ 131
             F +  ++    D+P+++++  G T   +KG   G  +YL+KP       +R+K L   +Q
Sbjct:    65 FDVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQ 124

Query:   132 HVAQQ 136
                 Q
Sbjct:   125 ITVSQ 129


>TIGR_CMR|CPS_1750 [details] [associations]
            symbol:CPS_1750 "transcriptional regulatory protein CpxR"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0009636 "response to
            toxic substance" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
            EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            HOGENOM:HOG000034819 KO:K07662 RefSeq:YP_268481.1
            ProteinModelPortal:Q484N4 STRING:Q484N4 GeneID:3518457
            KEGG:cps:CPS_1750 PATRIC:21466667
            BioCyc:CPSY167879:GI48-1820-MONOMER Uniprot:Q484N4
        Length = 242

 Score = 142 (55.0 bits), Expect = 9.7e-10, P = 9.7e-10
 Identities = 31/107 (28%), Positives = 61/107 (57%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L++DDD     +L + L    ++VT C   + A  + +   + +D+++ DV MP ++GF
Sbjct:    11 ILLIDDDAELSELLTEYLESENFKVTSC--LDGASGLAKAFDDSFDLILLDVMMPILNGF 68

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             ++ + +G     P++M++  G   D + G+  GA +YL KP + +EL
Sbjct:    69 EVLKALGGNHKTPILMLTAKGDDNDRILGLELGADDYLAKPFKHREL 115


>TIGR_CMR|DET_0170 [details] [associations]
            symbol:DET_0170 "DNA-binding response regulator"
            species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
            Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
            GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
            GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
            RefSeq:YP_180918.1 ProteinModelPortal:Q3ZA31 STRING:Q3ZA31
            GeneID:3230558 KEGG:det:DET0170 PATRIC:21607423 OMA:RIRVNIR
            ProtClustDB:CLSK741609 BioCyc:DETH243164:GJNF-170-MONOMER
            Uniprot:Q3ZA31
        Length = 232

 Score = 141 (54.7 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 32/111 (28%), Positives = 65/111 (58%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVT--KCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
             +++L+++DD     I++   +    +V   + +  E  L M+  +K   D +I D+ +PD
Sbjct:     1 MKILIIEDDAQTTEIVKLSFKLGWPDVRLLEASSGESGLAMVETAKP--DAIILDIGLPD 58

Query:    76 MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             + G+++  Q+ L  +LPVI++++     D++K ++ GA +YL+KP R  EL
Sbjct:    59 ISGYEVLRQIRLFSELPVIILTIRNEESDIVKALSLGADDYLVKPFRQMEL 109


>TIGR_CMR|BA_1312 [details] [associations]
            symbol:BA_1312 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
            RefSeq:NP_843778.1 RefSeq:YP_017926.1 RefSeq:YP_027483.1
            ProteinModelPortal:Q81TG5 DNASU:1086011
            EnsemblBacteria:EBBACT00000008055 EnsemblBacteria:EBBACT00000016708
            EnsemblBacteria:EBBACT00000023489 GeneID:1086011 GeneID:2814757
            GeneID:2850086 KEGG:ban:BA_1312 KEGG:bar:GBAA_1312 KEGG:bat:BAS1213
            OMA:WDEAENG ProtClustDB:CLSK916176
            BioCyc:BANT260799:GJAJ-1288-MONOMER
            BioCyc:BANT261594:GJ7F-1346-MONOMER Uniprot:Q81TG5
        Length = 223

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 33/108 (30%), Positives = 59/108 (54%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             RVLVVDD+    +++   L    YE  +    + AL   ++  + YD V+ D+ MP+MDG
Sbjct:     5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALK--KLETDHYDFVVLDIMMPEMDG 62

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
               + +++    D+P+I ++  G   + + G+  GA +Y++KP    EL
Sbjct:    63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGEL 110


>TIGR_CMR|DET_0232 [details] [associations]
            symbol:DET_0232 "DNA-binding response regulator"
            species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
            Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
            GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
            GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
            RefSeq:YP_180980.1 ProteinModelPortal:Q3Z9W9 STRING:Q3Z9W9
            GeneID:3230435 KEGG:det:DET0232 PATRIC:21607535 OMA:SIRELWI
            ProtClustDB:CLSK741610 BioCyc:DETH243164:GJNF-232-MONOMER
            Uniprot:Q3Z9W9
        Length = 227

 Score = 140 (54.3 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 33/111 (29%), Positives = 66/111 (59%)

Query:    18 LRVLVVDDDPIWLRILEKMLR-KCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
             +++L+++DD   + ++  + +  C    V   +     ++ +  S N  DI++ D+ +PD
Sbjct:     1 MKLLLIEDDAEIVDVISTIFQISCPNSRVISASSGRKGIESVE-SVNP-DIILLDLGLPD 58

Query:    76 MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             M+GF + +Q+    D+P+I+++V G   DV++G+T GA +Y+ KP R  EL
Sbjct:    59 MNGFDVLKQIRNFSDVPIIILTVRGDESDVVRGLTLGANDYITKPFRQMEL 109


>TAIR|locus:2141020 [details] [associations]
            symbol:APRR2 species:3702 "Arabidopsis thaliana"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=IEA;ISS] [GO:0000160 "phosphorelay signal transduction
            system" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0007623 "circadian rhythm" evidence=RCA;TAS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA]
            InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
            GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0035556
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
            EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL021889
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
            InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB041531
            EMBL:AF385725 EMBL:AY143963 IPI:IPI00524902 IPI:IPI00542892
            PIR:T05088 RefSeq:NP_001078405.1 RefSeq:NP_001154250.1
            RefSeq:NP_001190759.1 RefSeq:NP_567548.1 RefSeq:NP_849403.1
            RefSeq:NP_849404.2 UniGene:At.25394 ProteinModelPortal:Q6LA43
            SMR:Q6LA43 IntAct:Q6LA43 STRING:Q6LA43 EnsemblPlants:AT4G18020.1
            EnsemblPlants:AT4G18020.2 EnsemblPlants:AT4G18020.3
            EnsemblPlants:AT4G18020.6 GeneID:827527 KEGG:ath:AT4G18020
            GeneFarm:4314 TAIR:At4g18020 eggNOG:NOG268152 HOGENOM:HOG000005909
            InParanoid:Q6LA43 OMA:TIMISTD PhylomeDB:Q6LA43
            ProtClustDB:CLSN2689492 Genevestigator:Q6LA43 GermOnline:AT4G18020
            Uniprot:Q6LA43
        Length = 535

 Score = 148 (57.2 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 46/146 (31%), Positives = 69/146 (47%)

Query:    12 DQFPAGLRVLVV----DDDPIWLRILEKM--LRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
             + FP GL+VL++    D D       E    L    Y VT       AL  +  +   + 
Sbjct:    12 ENFPKGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNPESFH 71

Query:    66 IVISDVHMP-DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIK 124
             I I +V+M  + + FK  E    +  LP IM+S D C    MK +  GA  +L KP+  +
Sbjct:    72 IAIVEVNMSAESESFKFLEAA--KDVLPTIMISTDHCITTTMKCIALGAVEFLQKPLSPE 129

Query:   125 ELRNIWQHVAQQPKPFEESDDSYSVN 150
             +L+NIWQHV    K F +   + S++
Sbjct:   130 KLKNIWQHVVH--KAFNDGGSNVSIS 153


>UNIPROTKB|Q4GZK3 [details] [associations]
            symbol:rr8 "Type A response regulator 8" species:39946
            "Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
            stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
            GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
            STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
            Gramene:Q4GZK3 Uniprot:Q4GZK3
        Length = 121

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 37/117 (31%), Positives = 62/117 (52%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             VLVVDD  +   ++   L +    VT       AL M   S++  D+++SD  MPDM G+
Sbjct:     6 VLVVDDTHVDRHVVSMALMRHNVRVTAVESVMQAL-MFLDSEHDVDMIVSDYCMPDMTGY 64

Query:    80 KLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
              L  +V        LPV++ S D   + + K +  GA +Y+LKP++I ++  I +++
Sbjct:    65 NLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAKDYILKPVKIVDVPRIMKYI 121


>UNIPROTKB|Q50806 [details] [associations]
            symbol:trcR "Response regulator homolog TrcR" species:1773
            "Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IMP] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IDA] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0045892 GO:GO:0045893
            GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
            EMBL:AL123456 EMBL:U88959 PIR:D70624 RefSeq:NP_215549.1
            RefSeq:YP_006514396.1 SMR:Q50806 EnsemblBacteria:EBMYCT00000001946
            GeneID:13319598 GeneID:887957 KEGG:mtu:Rv1033c KEGG:mtv:RVBD_1033c
            PATRIC:18150824 TubercuList:Rv1033c KO:K07672 OMA:IAHNGRE
            ProtClustDB:CLSK790905 Uniprot:Q50806
        Length = 257

 Score = 140 (54.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 35/132 (26%), Positives = 72/132 (54%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +RVL+VDD+P    +++  L    ++V   +  + A+   +  K G D+++ D+ +PD+D
Sbjct:    32 IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAI--AKFDKVGPDVLVLDIMLPDVD 89

Query:    78 GFKLHEQVGLEMDL--PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQ 131
             G ++  +V  E D+  P + ++      D + G+T GA +Y+ KP  ++EL    R + +
Sbjct:    90 GLEILRRVR-ESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLR 148

Query:   132 HVAQQPKPFEES 143
               +   +P +E+
Sbjct:   149 RSSHLERPADEA 160


>TIGR_CMR|CJE_1261 [details] [associations]
            symbol:CJE_1261 "chemotaxis protein CheY" species:195099
            "Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
            activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
            GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
            OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
            ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
            KEGG:cjr:CJE1261 PATRIC:20044318
            BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
        Length = 130

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 33/114 (28%), Positives = 67/114 (58%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             +++LVVDD     RI++  L +  ++ V +      A D+L  +++   ++I+D +MP+M
Sbjct:     1 MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNED-VKVLITDWNMPEM 59

Query:    77 DGFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
             +G +L ++V  E    D+P+IM++ +G   +V+  +  G  NY++KP   + L+
Sbjct:    60 NGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLK 113


>TIGR_CMR|GSU_2219 [details] [associations]
            symbol:GSU_2219 "response regulator" species:243231
            "Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
            GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P08402
            RefSeq:NP_953268.1 ProteinModelPortal:Q74AY0 GeneID:2685652
            KEGG:gsu:GSU2219 PATRIC:22027293 OMA:VMLTAKK ProtClustDB:CLSK828762
            BioCyc:GSUL243231:GH27-2166-MONOMER Uniprot:Q74AY0
        Length = 123

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 34/116 (29%), Positives = 61/116 (52%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             R+L+V+D+   L++   +L    Y V      + ALD +  +    D++I D+ +P MDG
Sbjct:     5 RILIVEDEESLLKLESILLSSRGYAVAGVTDGKSALDYIAATPP--DLIILDIMLPGMDG 62

Query:    79 FKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
             F++ + +  +     +PV+M++    TQD  KG+  GA  Y+ KP +   +  I Q
Sbjct:    63 FEVCQMIKADPSTRHIPVVMLTAKKSTQDRDKGLEAGASAYVTKPFKSARIIEIIQ 118


>TIGR_CMR|GSU_1989 [details] [associations]
            symbol:GSU_1989 "sigma-54 dependent DNA-binding response
            regulator" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
            InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
            PROSITE:PS00688 RefSeq:NP_953038.1 ProteinModelPortal:Q74BQ2
            GeneID:2686140 KEGG:gsu:GSU1989 PATRIC:22026841 OMA:IARSLHY
            ProtClustDB:CLSK743130 BioCyc:GSUL243231:GH27-2007-MONOMER
            Uniprot:Q74BQ2
        Length = 444

 Score = 144 (55.7 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 39/121 (32%), Positives = 65/121 (53%)

Query:    17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             GL VL+VDD+P   R+L  +L    + V   + A  A  +L+ S++  D +I+D+ MP  
Sbjct:     3 GL-VLIVDDEPNAARVLSAILAGEGHTVLTASDASKAEHILK-SRD-VDAIITDLRMPGR 59

Query:    77 DGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135
             DG +L E V   + D+PVI ++  G     +  +T GA  Y +KP    +L+++     +
Sbjct:    60 DGMQLFEHVTEHLPDIPVIFLTAYGTVDSAVNAITRGAFYYFIKPPDYVKLKSMVARAVE 119

Query:   136 Q 136
             Q
Sbjct:   120 Q 120


>TIGR_CMR|CJE_1358 [details] [associations]
            symbol:CJE_1358 "DNA-binding response regulator"
            species:195099 "Campylobacter jejuni RM1221" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
            EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            HOGENOM:HOG000034819 PIR:A81329 RefSeq:YP_179345.1
            ProteinModelPortal:Q5HTP0 STRING:Q5HTP0 GeneID:3231864
            KEGG:cjr:CJE1358 PATRIC:20044514 OMA:ACIFEEI ProtClustDB:CLSK879148
            BioCyc:CJEJ195099:GJC0-1384-MONOMER Uniprot:Q5HTP0
        Length = 221

 Score = 136 (52.9 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 36/109 (33%), Positives = 58/109 (53%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++L+++DD     I+E+ L    YEV  C+ A+ ALDM    +  +D+ I DV +P  DG
Sbjct:     4 KILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAY--ERYFDLWILDVKVPLGDG 61

Query:    79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             F L +++       P I M+    T D+ +G   G  +Y+ KP  + EL
Sbjct:    62 FSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIKKPFELAEL 110


>TIGR_CMR|SPO_0251 [details] [associations]
            symbol:SPO_0251 "DNA-binding response regulator PetR"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
            response regulator activity" evidence=ISS] [GO:0000160
            "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
            SUPFAM:SSF46894 KO:K07659 RefSeq:YP_165515.1
            ProteinModelPortal:Q5LX38 GeneID:3196152 KEGG:sil:SPO0251
            PATRIC:23373753 OMA:DRGQAQE ProtClustDB:CLSK933195 Uniprot:Q5LX38
        Length = 233

 Score = 137 (53.3 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 35/107 (32%), Positives = 58/107 (54%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L+VDDD     +L+K L +  + VT    AE A  +L  S   +D+++ DV MP  DG 
Sbjct:     8 LLIVDDDERIRDLLKKFLMRHGFLVTAARDAEHARRIL--SGLDFDLIVMDVMMPGEDGV 65

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
              L   +   +  P+++++  G T+  + G+  GA +YL KP   +EL
Sbjct:    66 SLTRALRQTLSTPILLLTARGETEHRIAGLEAGADDYLAKPFEPREL 112


>UNIPROTKB|P0AEC5 [details] [associations]
            symbol:barA species:83333 "Escherichia coli K-12"
            [GO:0009927 "histidine phosphotransfer kinase activity"
            evidence=IDA] [GO:0046777 "protein autophosphorylation"
            evidence=IDA] [GO:0006468 "protein phosphorylation" evidence=IDA]
            [GO:0042542 "response to hydrogen peroxide" evidence=IMP]
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=IEA] [GO:0023014 "signal transduction by phosphorylation"
            evidence=IEA;IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
            transduction" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0071310 "cellular response to organic substance"
            evidence=IEP] [GO:0016868 "intramolecular transferase activity,
            phosphotransferases" evidence=ISS] [GO:0005887 "integral to plasma
            membrane" evidence=ISS] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0016020
            "membrane" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000160
            "phosphorelay signal transduction system" evidence=IEA;IDA]
            [GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA;IDA]
            InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
            InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
            InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
            Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
            PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073 SMART:SM00304
            SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
            GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0006355
            GO:GO:0035556 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0006351 GO:GO:0005622
            GO:GO:0042542 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            eggNOG:COG0784 GO:GO:0009927 GO:GO:0000155 Gene3D:1.10.287.130
            Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
            Gene3D:1.20.120.160 SUPFAM:SSF47226 EMBL:D10888 EMBL:U29580
            PIR:S20550 RefSeq:NP_417266.1 RefSeq:YP_490994.1
            ProteinModelPortal:P0AEC5 SMR:P0AEC5 DIP:DIP-47932N IntAct:P0AEC5
            MINT:MINT-1307958 EnsemblBacteria:EBESCT00000000619
            EnsemblBacteria:EBESCT00000017432 GeneID:12933292 GeneID:947255
            KEGG:ecj:Y75_p2723 KEGG:eco:b2786 PATRIC:32120988 EchoBASE:EB1341
            EcoGene:EG11367 HOGENOM:HOG000272329 KO:K07678 OMA:ANQVISQ
            ProtClustDB:PRK11107 BioCyc:EcoCyc:BARA-MONOMER
            BioCyc:ECOL316407:JW2757-MONOMER Genevestigator:P0AEC5
            GO:GO:0071310 InterPro:IPR019247 Pfam:PF09984 Uniprot:P0AEC5
        Length = 918

 Score = 148 (57.2 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 35/123 (28%), Positives = 63/123 (51%)

Query:    10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
             V+D+    + V+ VDD+P  L+++  +L   +  V  C+    A++  R  +  +D+++ 
Sbjct:   660 VTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVE--RAKQMPFDLILM 717

Query:    70 DVHMPDMDGFKLHE---QVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             D+ MPDMDG +  E   Q+  +   PVI ++         K +  G  +YL KPI  + L
Sbjct:   718 DIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777

Query:   127 RNI 129
              N+
Sbjct:   778 HNL 780


>TIGR_CMR|GSU_0451 [details] [associations]
            symbol:GSU_0451 "DNA-binding response regulator"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
            GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
            RefSeq:NP_951510.1 ProteinModelPortal:Q74G01 GeneID:2686349
            KEGG:gsu:GSU0451 PATRIC:22023646 OMA:MRRSELD ProtClustDB:CLSK827838
            BioCyc:GSUL243231:GH27-442-MONOMER Uniprot:Q74G01
        Length = 224

 Score = 136 (52.9 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 33/110 (30%), Positives = 59/110 (53%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             ++VLVV+D+      +++ L +  YEV      E  L M  + K GYD+++ DV +P  D
Sbjct:     1 MKVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMA-LDK-GYDLIVLDVMLPKKD 58

Query:    78 GFKLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G  +  ++    +  PV+M++     +D++ G+  G+ +YL KP    EL
Sbjct:    59 GLSVVRELRERKNSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAEL 108


>UNIPROTKB|Q3ADA5 [details] [associations]
            symbol:cheY2 "Chemotaxis protein CheY" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0006935 "chemotaxis"
            evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
            SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
            GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
            HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
            ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
            KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
            BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
        Length = 118

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 35/106 (33%), Positives = 61/106 (57%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG-YDIVISDVHMPDM 76
             ++VL+VDD     +  +++ +   +EV +   A   L+ L    NG +D++  DV+MP M
Sbjct:     1 MKVLIVDDSFTVRQYFKEIFQGFSWEVEE---AVNGLEALEKVLNGEFDLMTVDVNMPKM 57

Query:    77 DGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
             DG+    +V  + + LPVI++S +    D +KG+  GA  YL+KP+
Sbjct:    58 DGYTFVYKVREMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPV 103


>TIGR_CMR|CHY_1032 [details] [associations]
            symbol:CHY_1032 "chemotaxis protein CheY" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
            Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
            GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622
            GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
            ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
            KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
            BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
        Length = 118

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 35/106 (33%), Positives = 61/106 (57%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG-YDIVISDVHMPDM 76
             ++VL+VDD     +  +++ +   +EV +   A   L+ L    NG +D++  DV+MP M
Sbjct:     1 MKVLIVDDSFTVRQYFKEIFQGFSWEVEE---AVNGLEALEKVLNGEFDLMTVDVNMPKM 57

Query:    77 DGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
             DG+    +V  + + LPVI++S +    D +KG+  GA  YL+KP+
Sbjct:    58 DGYTFVYKVREMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPV 103


>UNIPROTKB|Q9AE24 [details] [associations]
            symbol:rprY "Transcriptional regulatory protein RprY"
            species:295405 "Bacteroides fragilis YCH46" [GO:0000160
            "phosphorelay signal transduction system" evidence=NAS] [GO:0003677
            "DNA binding" evidence=NAS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=NAS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
            GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            GO:GO:0000160 eggNOG:COG0745 EMBL:S59000 EMBL:AP006841
            GenomeReviews:AP006841_GR PIR:S33662 RefSeq:YP_101140.1
            ProteinModelPortal:Q9AE24 GeneID:3084945 KEGG:bfr:BF3864
            PATRIC:21053264 OMA:CVLDVMM ProtClustDB:CLSK823045 Uniprot:Q9AE24
        Length = 236

 Score = 136 (52.9 bits), Expect = 4.4e-09, P = 4.4e-09
 Identities = 33/110 (30%), Positives = 56/110 (50%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             LR+L+ +DD     +L + L+   Y        E         KN YD+ + DV MP  D
Sbjct:     8 LRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFL--KNKYDLCVFDVMMPKKD 65

Query:    78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             GF L ++V     ++P+I ++     +D+++G   GA +Y+ KP  ++EL
Sbjct:    66 GFTLAQEVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEEL 115


>UNIPROTKB|Q9KUA1 [details] [associations]
            symbol:VC_0622 "Sensory box sensor histidine
            kinase/response regulator" species:243277 "Vibrio cholerae O1
            biovar El Tor str. N16961" [GO:0000155 "phosphorelay sensor kinase
            activity" evidence=ISS] [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] [GO:0023014 "signal transduction
            by phosphorylation" evidence=ISS] [GO:0035556 "intracellular signal
            transduction" evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
            InterPro:IPR003594 InterPro:IPR003660 InterPro:IPR003661
            InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
            Pfam:PF00672 Pfam:PF02518 Pfam:PF13188 PRINTS:PR00344
            PROSITE:PS50110 PROSITE:PS50885 SMART:SM00091 SMART:SM00304
            SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
            GO:GO:0016021 GO:GO:0005524 GO:GO:0006355 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
            Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
            SUPFAM:SSF47384 PROSITE:PS50109 HSSP:P08402 PIR:A82300
            RefSeq:NP_230271.1 ProteinModelPortal:Q9KUA1 DNASU:2615410
            GeneID:2615410 KEGG:vch:VC0622 PATRIC:20080353 OMA:SLYVSSQ
            ProtClustDB:CLSK874044 Uniprot:Q9KUA1
        Length = 1177

 Score = 148 (57.2 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 39/127 (30%), Positives = 68/127 (53%)

Query:     3 PASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN 62
             P  S++  ++  P    +LV DD+P+ LR+L+  LR   Y V         L+ ++  K 
Sbjct:   758 PEQSNLPENEHGPL---LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKP 814

Query:    63 GYDIVISDVHMPDMDGFKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLK 119
               ++V+ D+ MP M G+++ E++    D   LP+IM++    + D ++G   GA +YL K
Sbjct:   815 --ELVLLDIMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSK 872

Query:   120 PIRIKEL 126
             P   +EL
Sbjct:   873 PFNKQEL 879


>TIGR_CMR|VC_0622 [details] [associations]
            symbol:VC_0622 "sensory box sensor histidine
            kinase/response regulator" species:686 "Vibrio cholerae O1 biovar
            El Tor" [GO:0000155 "phosphorelay sensor kinase activity"
            evidence=ISS] [GO:0000156 "phosphorelay response regulator
            activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR000014
            InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
            InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
            Pfam:PF00072 Pfam:PF00512 Pfam:PF00672 Pfam:PF02518 Pfam:PF13188
            PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50885 SMART:SM00091
            SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
            InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
            Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
            SUPFAM:SSF47384 PROSITE:PS50109 HSSP:P08402 PIR:A82300
            RefSeq:NP_230271.1 ProteinModelPortal:Q9KUA1 DNASU:2615410
            GeneID:2615410 KEGG:vch:VC0622 PATRIC:20080353 OMA:SLYVSSQ
            ProtClustDB:CLSK874044 Uniprot:Q9KUA1
        Length = 1177

 Score = 148 (57.2 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 39/127 (30%), Positives = 68/127 (53%)

Query:     3 PASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN 62
             P  S++  ++  P    +LV DD+P+ LR+L+  LR   Y V         L+ ++  K 
Sbjct:   758 PEQSNLPENEHGPL---LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKP 814

Query:    63 GYDIVISDVHMPDMDGFKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLK 119
               ++V+ D+ MP M G+++ E++    D   LP+IM++    + D ++G   GA +YL K
Sbjct:   815 --ELVLLDIMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSK 872

Query:   120 PIRIKEL 126
             P   +EL
Sbjct:   873 PFNKQEL 879


>TIGR_CMR|SO_0622 [details] [associations]
            symbol:SO_0622 "DNA-binding response regulator"
            species:211586 "Shewanella oneidensis MR-1" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
            GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
            HOGENOM:HOG000034815 HSSP:Q9WYN0 RefSeq:NP_716255.1
            ProteinModelPortal:Q8EJ51 GeneID:1168488 KEGG:son:SO_0622
            PATRIC:23520932 OMA:PFHTQEL ProtClustDB:CLSK905847 Uniprot:Q8EJ51
        Length = 224

 Score = 135 (52.6 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 36/110 (32%), Positives = 62/110 (56%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +++L+V+D+P+ +  LEK L++  Y VT      +  D L + +  YD VI D+ +PD +
Sbjct:     1 MKLLLVEDNPMLVSELEKQLKQAGY-VTDITDKALEADYL-VKETQYDCVILDIGLPDGN 58

Query:    78 GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G +L E    + +  PVIM++      + ++G   GA +YL KP   +EL
Sbjct:    59 GLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQEL 108


>TIGR_CMR|DET_1540 [details] [associations]
            symbol:DET_1540 "DNA-binding response regulator"
            species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
            EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            HOGENOM:HOG000034815 RefSeq:YP_182238.1 ProteinModelPortal:Q3Z6B1
            GeneID:3229185 KEGG:det:DET1540 PATRIC:21610100 OMA:ARIRCIL
            ProtClustDB:CLSK741608 BioCyc:DETH243164:GJNF-1541-MONOMER
            Uniprot:Q3Z6B1
        Length = 225

 Score = 135 (52.6 bits), Expect = 4.6e-09, P = 4.6e-09
 Identities = 33/111 (29%), Positives = 63/111 (56%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVT--KCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
             +++L+++DD   ++ +   L+    +VT    +R E  L M+   +   ++VI D+ +PD
Sbjct:     1 MKILIIEDDYKIVQAISFALKIGWPDVTLLSASRGESGLRMIEEQRP--NLVILDLSLPD 58

Query:    76 MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             MDG ++ +   L  D P+I+++V     DV++ +  GA  Y++KP R  EL
Sbjct:    59 MDGLEVLKDARLFCDTPIIILTVRSEESDVVEALELGANEYIIKPFRQMEL 109


>UNIPROTKB|Q4GZL0 [details] [associations]
            symbol:rr1 "Type A response regulator 1" species:39946
            "Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
            stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
            GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 EMBL:CM000129 EMBL:AJ938070 eggNOG:NOG76823
            Uniprot:Q4GZL0
        Length = 231

 Score = 135 (52.6 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 35/122 (28%), Positives = 72/122 (59%)

Query:    19 RVLVVDDDPIWLRILEKMLRK--CL--YEVTKCNRAEIALDMLRMSKNG----YDIVISD 70
             RVL+VDD P+  R+++ +L    C   + V   + A+ A++ L + + G     D+V++D
Sbjct:     9 RVLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDMVLTD 68

Query:    71 VHMPDMDGFKLHEQV-GLE--MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
               MP+M G++L + +  L     +PVI+MS +   Q + + +  GA ++++KP++ K+++
Sbjct:    69 YCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQSKDVQ 128

Query:   128 NI 129
              +
Sbjct:   129 RL 130


>TIGR_CMR|GSU_1495 [details] [associations]
            symbol:GSU_1495 "sigma-54 dependent DNA-binding response
            regulator" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
            InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
            PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
            RefSeq:NP_952546.1 ProteinModelPortal:Q74D24 GeneID:2686126
            KEGG:gsu:GSU1495 PATRIC:22025837 KO:K02667 OMA:IHARAGH
            ProtClustDB:CLSK828394 BioCyc:GSUL243231:GH27-1478-MONOMER
            Uniprot:Q74D24
        Length = 458

 Score = 142 (55.0 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 38/112 (33%), Positives = 62/112 (55%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             + VLVVDD+      L  +L +  Y V +   AE AL  L   +  YD+VISDV MP +D
Sbjct:     3 IHVLVVDDELSMREFLAILLDREGYTVDQAASAEEALACLE--RKTYDLVISDVKMPGLD 60

Query:    78 GFKLHEQVGLEM--DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
             G  L  ++  EM  D  V++M+     +  ++ +  GA +Y+ KP +++E++
Sbjct:    61 GITLLGRIK-EMTPDTAVLLMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEVK 111


>TIGR_CMR|BA_1877 [details] [associations]
            symbol:BA_1877 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
            RefSeq:NP_844293.1 RefSeq:YP_018518.1 RefSeq:YP_028003.1
            HSSP:Q9WXY0 ProteinModelPortal:Q81S03 DNASU:1087421
            EnsemblBacteria:EBBACT00000008114 EnsemblBacteria:EBBACT00000014243
            EnsemblBacteria:EBBACT00000023021 GeneID:1087421 GeneID:2817591
            GeneID:2853065 KEGG:ban:BA_1877 KEGG:bar:GBAA_1877 KEGG:bat:BAS1739
            OMA:ANLMQEG ProtClustDB:CLSK584084
            BioCyc:BANT260799:GJAJ-1808-MONOMER
            BioCyc:BANT261594:GJ7F-1884-MONOMER Uniprot:Q81S03
        Length = 232

 Score = 135 (52.6 bits), Expect = 5.4e-09, P = 5.4e-09
 Identities = 31/101 (30%), Positives = 55/101 (54%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L+VDDD   +R +   L +  ++V      E AL+++  + N   + I D+ MP MDG 
Sbjct:     6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEII--NNNSIQLAILDIMMPQMDGI 63

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
             +L  ++  +  LP+I +S      D + G + GA +Y++KP
Sbjct:    64 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKP 104


>UNIPROTKB|Q9KRC3 [details] [associations]
            symbol:VC_1719 "DNA-binding response regulator TorR"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] [GO:0035556 "intracellular signal transduction"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
            Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
            GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
            ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
            ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
            KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
        Length = 234

 Score = 135 (52.6 bits), Expect = 5.6e-09, P = 5.6e-09
 Identities = 41/143 (28%), Positives = 76/143 (53%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             VLVV+DD +    L    +   Y+VT+        + L +  N  D+V+ D+++P  DG 
Sbjct:     5 VLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALEL--NDIDLVLLDINLPGEDGL 62

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMK--GVTHGACNYLLKPIRIKEL----RNI-WQ- 131
              L  ++  + ++ +I+  V G T  + K  G+  GA +Y+ KP+ ++EL    +N+ W+ 
Sbjct:    63 LLTRELRSQSEIGIIL--VTGRTDSIDKIVGLEMGADDYVTKPVDLRELQVRVKNLLWRI 120

Query:   132 HVAQQPKPFEESDDSYSVNQGNW 154
              +AQ+ +  ++ DD   V+ G W
Sbjct:   121 SLAQRERITDKHDDKL-VHFGEW 142


>TIGR_CMR|VC_1719 [details] [associations]
            symbol:VC_1719 "DNA-binding response regulator TorR"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
            GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
            ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
            ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
            KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
        Length = 234

 Score = 135 (52.6 bits), Expect = 5.6e-09, P = 5.6e-09
 Identities = 41/143 (28%), Positives = 76/143 (53%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             VLVV+DD +    L    +   Y+VT+        + L +  N  D+V+ D+++P  DG 
Sbjct:     5 VLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALEL--NDIDLVLLDINLPGEDGL 62

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMK--GVTHGACNYLLKPIRIKEL----RNI-WQ- 131
              L  ++  + ++ +I+  V G T  + K  G+  GA +Y+ KP+ ++EL    +N+ W+ 
Sbjct:    63 LLTRELRSQSEIGIIL--VTGRTDSIDKIVGLEMGADDYVTKPVDLRELQVRVKNLLWRI 120

Query:   132 HVAQQPKPFEESDDSYSVNQGNW 154
              +AQ+ +  ++ DD   V+ G W
Sbjct:   121 SLAQRERITDKHDDKL-VHFGEW 142


>UNIPROTKB|Q9KT55 [details] [associations]
            symbol:VC_1050 "Response regulator" species:243277 "Vibrio
            cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
            response regulator activity" evidence=ISS] [GO:0000160
            "phosphorelay signal transduction system" evidence=ISS] [GO:0035556
            "intracellular signal transduction" evidence=ISS]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM
            HSSP:Q56312 PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
            DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
            ProtClustDB:CLSK874195 Uniprot:Q9KT55
        Length = 368

 Score = 140 (54.3 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 37/111 (33%), Positives = 63/111 (56%)

Query:    13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY-DIVISDV 71
             Q  A   +L+VDDDP++ R+ +  L+K  Y+V +   AE  LD LR  ++   D+++ D+
Sbjct:    20 QITAAKLILLVDDDPVFRRMTKGYLQKYGYQVIE---AENGLDGLRKLRDHEPDLILCDL 76

Query:    72 HMPDMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
              MP ++G +  E+V      LP++++S      DV K +  G  ++L KPI
Sbjct:    77 SMPVLNGIEFVEEVSSSYPSLPLVVVSATEEMADVAKALRFGIKDFLPKPI 127


>TIGR_CMR|VC_1050 [details] [associations]
            symbol:VC_1050 "response regulator" species:686 "Vibrio
            cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM HSSP:Q56312
            PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
            DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
            ProtClustDB:CLSK874195 Uniprot:Q9KT55
        Length = 368

 Score = 140 (54.3 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 37/111 (33%), Positives = 63/111 (56%)

Query:    13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY-DIVISDV 71
             Q  A   +L+VDDDP++ R+ +  L+K  Y+V +   AE  LD LR  ++   D+++ D+
Sbjct:    20 QITAAKLILLVDDDPVFRRMTKGYLQKYGYQVIE---AENGLDGLRKLRDHEPDLILCDL 76

Query:    72 HMPDMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
              MP ++G +  E+V      LP++++S      DV K +  G  ++L KPI
Sbjct:    77 SMPVLNGIEFVEEVSSSYPSLPLVVVSATEEMADVAKALRFGIKDFLPKPI 127


>TIGR_CMR|BA_0651 [details] [associations]
            symbol:BA_0651 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843182.1
            RefSeq:YP_017279.1 RefSeq:YP_026895.1 ProteinModelPortal:Q81V49
            DNASU:1088070 EnsemblBacteria:EBBACT00000008363
            EnsemblBacteria:EBBACT00000015665 EnsemblBacteria:EBBACT00000022532
            GeneID:1088070 GeneID:2814886 GeneID:2850289 KEGG:ban:BA_0651
            KEGG:bar:GBAA_0651 KEGG:bat:BAS0618 OMA:LWDEAKH
            ProtClustDB:CLSK915873 BioCyc:BANT260799:GJAJ-677-MONOMER
            BioCyc:BANT261594:GJ7F-704-MONOMER Uniprot:Q81V49
        Length = 225

 Score = 134 (52.2 bits), Expect = 6.0e-09, P = 6.0e-09
 Identities = 32/107 (29%), Positives = 60/107 (56%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L+VDD+P  L +L   L    Y        E A+  +  ++N +  ++ D+ MP MDG+
Sbjct:     4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIE-NQN-FKFILLDIMMPKMDGW 61

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             +  +++    ++P+IM++    T DV++G+  GA +Y+ KP   +EL
Sbjct:    62 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEEL 108


>TAIR|locus:2199342 [details] [associations]
            symbol:APRR6 "pseudo-response regulator 6" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA;TAS] InterPro:IPR001789
            InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355
            GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60
            SUPFAM:SSF46689 EMBL:AC016447 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557 KO:K14491
            IPI:IPI00522591 IPI:IPI01020037 PIR:E96705 RefSeq:NP_176988.4
            UniGene:At.52431 ProteinModelPortal:Q9C9F6 SMR:Q9C9F6 PaxDb:Q9C9F6
            PRIDE:Q9C9F6 GeneID:843150 KEGG:ath:AT1G68210 GeneFarm:4346
            TAIR:At1g68210 eggNOG:NOG320519 OMA:IANIEMP Genevestigator:Q9C9F6
            Uniprot:Q9C9F6
        Length = 755

 Score = 144 (55.7 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 37/136 (27%), Positives = 72/136 (52%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             + +L++D D   +  L  ML++    V   + A  AL M+   K    ++I+++ MP +D
Sbjct:    13 ISILLIDHDTASIASLTSMLQQFSKRVMSVDVASKALSMIEKQKKEIGLIIANIEMPHID 72

Query:    78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV---- 133
                    + L+ D+P+I+++ +  T++    +T  AC  L KPI   +++N+WQHV    
Sbjct:    73 SHSFLNALLLK-DIPLILINPEIKTKEPSDLLTKRACFSLDKPISNDDIKNMWQHVFSKK 131

Query:   134 AQQPKPFEESDDSYSV 149
             +Q+ K    ++D  +V
Sbjct:   132 SQELKKINITEDQENV 147


>TIGR_CMR|BA_5106 [details] [associations]
            symbol:BA_5106 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
            RefSeq:NP_847292.1 RefSeq:YP_030989.1 RefSeq:YP_052651.1
            ProteinModelPortal:Q81K99 DNASU:1084409
            EnsemblBacteria:EBBACT00000012632 EnsemblBacteria:EBBACT00000014721
            EnsemblBacteria:EBBACT00000022679 GeneID:1084409 GeneID:2821239
            GeneID:2851460 KEGG:ban:BA_5106 KEGG:bar:GBAA_5106 KEGG:bat:BAS4745
            OMA:VVINPER ProtClustDB:CLSK873134
            BioCyc:BANT260799:GJAJ-4799-MONOMER
            BioCyc:BANT261594:GJ7F-4958-MONOMER Uniprot:Q81K99
        Length = 232

 Score = 134 (52.2 bits), Expect = 7.0e-09, P = 7.0e-09
 Identities = 32/109 (29%), Positives = 56/109 (51%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             + +L+ DD+     ++E  L K  Y V K    E A+ ++       D+V+ D+ MP MD
Sbjct:     4 ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP--IDLVVLDIMMPKMD 61

Query:    78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G+++  Q+  +  +P+I +S      D + G+  GA +Y+ KP    EL
Sbjct:    62 GYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIEL 110


>UNIPROTKB|Q48GG3 [details] [associations]
            symbol:cheY2 "Chemotaxis protein CheY" species:264730
            "Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
            transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
            evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
            SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
            GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
            eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
            ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
            KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
            ProtClustDB:CLSK642753 Uniprot:Q48GG3
        Length = 124

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 32/114 (28%), Positives = 62/114 (54%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG-YDIVISDVHMPDM 76
             +++L+VDD     RI++ +LR   +  T  + A+  L  L M ++G +D +++D +MP M
Sbjct:     1 MKILIVDDFSTMRRIIKNLLRDLGF--TNTSEADDGLTALPMLQSGAFDFLVTDWNMPGM 58

Query:    77 DGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
              G  L  QV  +     LPV+M++ +   + +++    G   Y++KP   + L+
Sbjct:    59 TGIDLLRQVRADERLKSLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALK 112


>TIGR_CMR|BA_4833 [details] [associations]
            symbol:BA_4833 "DNA-binding response regulator PhoP"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0006796
            "phosphate-containing compound metabolic process" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
            GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 KO:K07658
            RefSeq:NP_847036.1 RefSeq:YP_021478.1 RefSeq:YP_030731.1
            ProteinModelPortal:Q81L01 SMR:Q81L01 DNASU:1086976
            EnsemblBacteria:EBBACT00000010602 EnsemblBacteria:EBBACT00000014654
            EnsemblBacteria:EBBACT00000019808 GeneID:1086976 GeneID:2814633
            GeneID:2851563 KEGG:ban:BA_4833 KEGG:bar:GBAA_4833 KEGG:bat:BAS4484
            OMA:LYLGRHK ProtClustDB:CLSK887707
            BioCyc:BANT260799:GJAJ-4541-MONOMER
            BioCyc:BANT261594:GJ7F-4695-MONOMER Uniprot:Q81L01
        Length = 239

 Score = 134 (52.2 bits), Expect = 8.0e-09, P = 8.0e-09
 Identities = 38/137 (27%), Positives = 73/137 (53%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             R+LVVDD+   L ++E  L++  +EV      E+AL      +   D++I D+ +P MDG
Sbjct:     4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERP--DLIILDLMLPKMDG 61

Query:    79 FKLHEQVGLEMDL-PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHV 133
              ++ +++ L+  + P++M++      D + G+  GA +Y+ KP   +E+    + I +  
Sbjct:    62 MEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRT 121

Query:   134 A-QQPKPFEESDDSYSV 149
               QQ +   E+ D  S+
Sbjct:   122 KLQQEEQVTETSDEESI 138


>TIGR_CMR|SO_4388 [details] [associations]
            symbol:SO_4388 "DNA-binding response regulator"
            species:211586 "Shewanella oneidensis MR-1" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
            EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
            RefSeq:NP_719912.1 ProteinModelPortal:Q8E997 GeneID:1171990
            KEGG:son:SO_4388 PATRIC:23528433 ProtClustDB:CLSK889389
            Uniprot:Q8E997
        Length = 227

 Score = 133 (51.9 bits), Expect = 8.2e-09, P = 8.2e-09
 Identities = 35/112 (31%), Positives = 63/112 (56%)

Query:    18 LRVLVVDDDPIWLRI-LEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             +++L+ +DD I +R  L  ML +  Y V   +  ++AL  L+  +   D +I D+ MP++
Sbjct:     1 MKILIAEDD-IHIRQGLADMLSREGYSVLLADNGKVAL--LKYQQEQPDFIILDIMMPEL 57

Query:    77 DGFKLHEQVGL-EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
             DG+ + +++   +   PVI +S  G   D + G+  GA +Y+ KP  I E+R
Sbjct:    58 DGYSVCKEIRKHDEQTPVIFLSAKGEELDKVLGLELGADDYINKPFGIHEVR 109


>UNIPROTKB|P0A5Z4 [details] [associations]
            symbol:mtrA "DNA-binding response regulator MtrA"
            species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
            membrane" evidence=IDA] [GO:0006468 "protein phosphorylation"
            evidence=IDA] [GO:0044117 "growth of symbiont in host"
            evidence=IMP] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0005886 GO:GO:0045893 EMBL:AE000516
            GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
            GO:GO:0003677 GO:GO:0006468 GO:GO:0044117 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:BX842582
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            HOGENOM:HOG000034819 EMBL:U01971 PIR:H70592 RefSeq:NP_217763.1
            RefSeq:NP_337872.1 RefSeq:YP_006516722.1 PDB:2GWR PDB:3NHZ
            PDBsum:2GWR PDBsum:3NHZ ProteinModelPortal:P0A5Z4 SMR:P0A5Z4
            EnsemblBacteria:EBMYCT00000000173 EnsemblBacteria:EBMYCT00000070796
            GeneID:13318068 GeneID:888743 GeneID:923067 KEGG:mtc:MT3344
            KEGG:mtu:Rv3246c KEGG:mtv:RVBD_3246c PATRIC:18129108
            TubercuList:Rv3246c KO:K07670 OMA:GFEPSFV ProtClustDB:CLSK872159
            EvolutionaryTrace:P0A5Z4 Uniprot:P0A5Z4
        Length = 228

 Score = 133 (51.9 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 33/108 (30%), Positives = 59/108 (54%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             R+LVVDDD     +L  +LR   ++         AL  +R  +   D+V+ D+ +P M+G
Sbjct:     7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP--DLVLLDLMLPGMNG 64

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
               +   +  +  +P++M++    T DV+ G+  GA +Y++KP + KEL
Sbjct:    65 IDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKEL 112


>TIGR_CMR|GSU_1003 [details] [associations]
            symbol:GSU_1003 "nitrogen regulation protein NR(I)"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
            InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
            Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
            SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
            Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
            InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
            PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
            HSSP:P06143 RefSeq:NP_952057.1 ProteinModelPortal:Q74EF9
            GeneID:2687478 KEGG:gsu:GSU1003 PATRIC:22024778 OMA:NQVRAAD
            ProtClustDB:CLSK828129 BioCyc:GSUL243231:GH27-989-MONOMER
            Uniprot:Q74EF9
        Length = 481

 Score = 140 (54.3 bits), Expect = 9.4e-09, P = 9.4e-09
 Identities = 35/116 (30%), Positives = 63/116 (54%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             R+LV DD+     +L K LRK  + V      E AL +++   N YD+ I D+ MP   G
Sbjct:     5 RILVADDEESMRWVLSKALRKKGFTVDLARDGEEALRLIQ--SNEYDLAILDIKMPGFTG 62

Query:    79 FKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
              +L ++V  L+ DL +++M+ +   ++ ++ +  GA +Y+ KP  +  +  I + V
Sbjct:    63 LELLDKVRELKHDLLMVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIIEKV 118


>UNIPROTKB|Q9KQD5 [details] [associations]
            symbol:VC_2065 "Chemotaxis protein CheY" species:243277
            "Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
            transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
            evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
            SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
            OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
            ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
            KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
            Uniprot:Q9KQD5
        Length = 130

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 32/114 (28%), Positives = 61/114 (53%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG-YDIVISDVHMPDM 76
             +++L+VDD     RI++ +LR   +  T+   A+  L  L M K G +D V++D +MP M
Sbjct:     9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQ--EADDGLTALPMLKKGDFDFVVTDWNMPGM 66

Query:    77 DGFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
              G  L + +  + +L   PV+M++ +   + +++    G   Y++KP     L+
Sbjct:    67 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLK 120


>TIGR_CMR|VC_2065 [details] [associations]
            symbol:VC_2065 "chemotaxis protein CheY" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
            activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
            HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
            SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
            PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
        Length = 130

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 32/114 (28%), Positives = 61/114 (53%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG-YDIVISDVHMPDM 76
             +++L+VDD     RI++ +LR   +  T+   A+  L  L M K G +D V++D +MP M
Sbjct:     9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQ--EADDGLTALPMLKKGDFDFVVTDWNMPGM 66

Query:    77 DGFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
              G  L + +  + +L   PV+M++ +   + +++    G   Y++KP     L+
Sbjct:    67 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLK 120


>UNIPROTKB|O07776 [details] [associations]
            symbol:tcrA "Transcriptional regulatory protein TcrA"
            species:1773 "Mycobacterium tuberculosis" [GO:0000156 "phosphorelay
            response regulator activity" evidence=IDA] [GO:0005886 "plasma
            membrane" evidence=IDA] [GO:0035556 "intracellular signal
            transduction" evidence=IDA] [GO:0070298 "negative regulation of
            phosphorelay signal transduction system" evidence=IDA]
            InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005886
            GO:GO:0005737 GO:GO:0006355 GenomeReviews:AL123456_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 EMBL:BX842574
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HOGENOM:HOG000034815 GO:GO:0070298 PIR:E70909 RefSeq:NP_215116.1
            RefSeq:YP_006513938.1 HSSP:Q9WYN0 ProteinModelPortal:O07776
            SMR:O07776 PRIDE:O07776 EnsemblBacteria:EBMYCT00000002096
            GeneID:13318480 GeneID:887870 KEGG:mtu:Rv0602c KEGG:mtv:RVBD_0602c
            PATRIC:18149834 TubercuList:Rv0602c KO:K02483
            ProtClustDB:CLSK790622 Uniprot:O07776
        Length = 253

 Score = 134 (52.2 bits), Expect = 9.9e-09, P = 9.9e-09
 Identities = 34/112 (30%), Positives = 61/112 (54%)

Query:    16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
             +G+R+LVV+D+P    +L + L +  + V        A+    +    YD V+ DV +P 
Sbjct:    21 SGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAV--AAVDGGDYDAVVLDVMLPG 78

Query:    76 MDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             +DGF++  ++  + +  PV+M++  G   D + G+  GA +YL KP  + EL
Sbjct:    79 IDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDEL 130


>UNIPROTKB|Q4GZK9 [details] [associations]
            symbol:rr2 "Type A response regulator 2" species:39946
            "Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
            stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
            GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938071
            ProteinModelPortal:Q4GZK9 KEGG:dosa:Os02t0557800-01 Gramene:Q4GZK9
            Uniprot:Q4GZK9
        Length = 252

 Score = 113 (44.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 27/90 (30%), Positives = 52/90 (57%)

Query:    65 DIVISDVHMPDMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
             DIV++D  MP+M G+ L + +   G    +PV++MS +   Q + + +T GA +++LKP+
Sbjct:    85 DIVLTDYCMPEMTGYDLLKAIKALGSPNPIPVVVMSSENEPQRISRCLTAGAEDFILKPL 144

Query:   122 RIKELRNIWQ-HVAQQPKPFEESDDSYSVN 150
             ++ +++ + +   A +PK     DD    N
Sbjct:   145 KMNDVQRLRKCSGATRPKSAVAGDDDRCCN 174

 Score = 61 (26.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 12/21 (57%), Positives = 17/21 (80%)

Query:    18 LRVLVVDDDPIWLRILEKMLR 38
             +RVLVVDD P+  R++E +LR
Sbjct:     6 VRVLVVDDSPVDRRVVELLLR 26


>DICTYBASE|DDB_G0282927 [details] [associations]
            symbol:dhkL "histidine kinase L" species:44689
            "Dictyostelium discoideum" [GO:0035556 "intracellular signal
            transduction" evidence=IEA] [GO:0023014 "signal transduction by
            phosphorylation" evidence=IEA] [GO:0016772 "transferase activity,
            transferring phosphorus-containing groups" evidence=IEA]
            [GO:0016310 "phosphorylation" evidence=IEA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0000160
            "phosphorelay signal transduction system" evidence=IEA] [GO:0000156
            "phosphorelay response regulator activity" evidence=IEA]
            [GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
            [GO:0004673 "protein histidine kinase activity" evidence=IEA]
            [GO:0016740 "transferase activity" evidence=IEA] [GO:0016301
            "kinase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR001789
            InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
            InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
            PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113
            SMART:SM00091 SMART:SM00387 SMART:SM00388 SMART:SM00448
            InterPro:IPR005467 InterPro:IPR001610 dictyBase:DDB_G0282927
            GO:GO:0005525 GO:GO:0005524 GenomeReviews:CM000153_GR GO:GO:0016020
            GO:GO:0006355 GO:GO:0035556 GO:GO:0003924 GO:GO:0006184
            GO:GO:0005622 EMBL:AAFI02000049 GO:GO:0023014 SMART:SM00086
            TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
            SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642
            EMBL:AF362373 EMBL:AF258796 RefSeq:XP_639305.1
            ProteinModelPortal:Q54RP6 EnsemblProtists:DDB0191389 GeneID:8623876
            KEGG:ddi:DDB_G0282927 OMA:FIERNDT Uniprot:Q54RP6
        Length = 1709

 Score = 146 (56.5 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 45/153 (29%), Positives = 78/153 (50%)

Query:     6 SSVAVSDQFPAGL--RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK-N 62
             +S    +Q P+ L  +VLVVDD+ I ++IL KML+    EV        AL  +  S  +
Sbjct:  1555 ASAEEQEQDPSKLLGKVLVVDDNHINIQILSKMLQTVGCEVDSVLSGADALAKINQSSGD 1614

Query:    63 GYDIVISDVHMPDMDGFKLHEQVG---LEMDLP---VIMMSVDGCTQDVMKGVTHGACNY 116
              YD +  D+ MPDMDGF++  ++     +  LP   +I  + +   +D +K    G  ++
Sbjct:  1615 SYDAIFLDIQMPDMDGFQVSRKIREREKKFSLPRVAIIATTANVFKEDQLKCFDAGMDDF 1674

Query:   117 LLKPIRIKELRNIWQHVAQQPKPFEESDDSYSV 149
             + KPI+  E++ I +   +      +S  +YS+
Sbjct:  1675 ISKPIKRAEIKEIIKKYGKNGN--HQSGSAYSL 1705


>TIGR_CMR|BA_4777 [details] [associations]
            symbol:BA_4777 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
            RefSeq:NP_846982.1 RefSeq:YP_021423.1 RefSeq:YP_030680.1
            ProteinModelPortal:Q81L55 DNASU:1083888
            EnsemblBacteria:EBBACT00000012704 EnsemblBacteria:EBBACT00000017584
            EnsemblBacteria:EBBACT00000020354 GeneID:1083888 GeneID:2815717
            GeneID:2851624 KEGG:ban:BA_4777 KEGG:bar:GBAA_4777 KEGG:bat:BAS4433
            OMA:DISIQEM ProtClustDB:CLSK917419
            BioCyc:BANT260799:GJAJ-4490-MONOMER
            BioCyc:BANT261594:GJ7F-4640-MONOMER Uniprot:Q81L55
        Length = 230

 Score = 132 (51.5 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 33/107 (30%), Positives = 58/107 (54%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L+V+DD     ++EK L K  ++VT  +  E  +D     K  +D++I D+ MP +DG 
Sbjct:     5 ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYL--KGSFDLIILDIMMPKLDGL 62

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             ++   +  +  +P++MMS      D   G+  GA +Y+ KP  + EL
Sbjct:    63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIEL 109


>TIGR_CMR|GSU_1671 [details] [associations]
            symbol:GSU_1671 "response regulator/GGDEF domain protein"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
            SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
            EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
            GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
            TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205 RefSeq:NP_952722.1
            ProteinModelPortal:Q74CK2 GeneID:2687445 KEGG:gsu:GSU1671
            PATRIC:22026193 OMA:IADWLMP ProtClustDB:CLSK740862
            BioCyc:GSUL243231:GH27-1671-MONOMER Uniprot:Q74CK2
        Length = 322

 Score = 136 (52.9 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 38/129 (29%), Positives = 66/129 (51%)

Query:     1 MSPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS 60
             M+ A +    + +FP    +L+VDD+ +   +LE  L+   Y+V      + AL++   +
Sbjct:     1 MTDAITDETRAPRFP--FPILIVDDNRLLRTMLETSLKSAGYDVVMAENGKEALEIF--N 56

Query:    61 KNGYDIVISDVHMPDMDGFKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYL 117
             K  Y IV++D  MP+MDG +L   +  +       +I+++      DV+ G+  GA  YL
Sbjct:    57 KGYYPIVMTDWVMPEMDGLELCRAIRADCSGRYTYIILLTSQDSKNDVIAGLEAGADEYL 116

Query:   118 LKPIRIKEL 126
             +KP    EL
Sbjct:   117 VKPAHQVEL 125


>TIGR_CMR|BA_2561 [details] [associations]
            symbol:BA_2561 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:Q9WYN0 RefSeq:NP_844929.1
            RefSeq:YP_019199.1 RefSeq:YP_028645.1 ProteinModelPortal:Q81Q72
            DNASU:1085788 EnsemblBacteria:EBBACT00000009128
            EnsemblBacteria:EBBACT00000014330 EnsemblBacteria:EBBACT00000023961
            GeneID:1085788 GeneID:2819548 GeneID:2848970 KEGG:ban:BA_2561
            KEGG:bar:GBAA_2561 KEGG:bat:BAS2385 OMA:LETVMNG
            ProtClustDB:CLSK916690 BioCyc:BANT260799:GJAJ-2450-MONOMER
            BioCyc:BANT261594:GJ7F-2538-MONOMER Uniprot:Q81Q72
        Length = 231

 Score = 132 (51.5 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 32/107 (29%), Positives = 57/107 (53%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L++DDD   + +L   LR   Y + K    + AL M+  S    D++I D+ MP  +G 
Sbjct:     5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI--STYEVDLMILDIMMPKRNGL 62

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             ++ ++V     +P++M+S      D + G+  GA +Y++KP    EL
Sbjct:    63 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLEL 109


>TIGR_CMR|SPO_3037 [details] [associations]
            symbol:SPO_3037 "DNA-binding response regulator, LysR
            family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR000847 InterPro:IPR001789
            Pfam:PF00072 Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50110
            PROSITE:PS50931 SMART:SM00448 GO:GO:0035556 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:YP_168241.1
            ProteinModelPortal:Q5LP15 DNASU:3195987 GeneID:3195987
            KEGG:sil:SPO3037 PATRIC:23379513 Uniprot:Q5LP15
        Length = 269

 Score = 134 (52.2 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 40/119 (33%), Positives = 63/119 (52%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +LVVDD P  +  L  +L+   Y +      + AL  L  S    D+++ D+ MPDMDG+
Sbjct:   115 LLVVDDTPQNIHHLHGLLKDA-YRIIPQTSGKGALSFL--SGELADLILLDIRMPDMDGY 171

Query:    80 KLHEQVGLEM---DLPVIMM-SVDGCTQDVMKGVTHGACNYLLKPIRIKELR-NIWQHV 133
             ++  Q+       D+PVI + S+D    D  KG+  GAC+++ +PI    LR  I  H+
Sbjct:   172 EVCRQIKSTASLADIPVIFLTSLDD-PMDETKGLEMGACDFITRPIVPAILRARIRSHI 229


>TIGR_CMR|BA_0271 [details] [associations]
            symbol:BA_0271 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
            RefSeq:NP_842823.1 RefSeq:YP_016879.1 RefSeq:YP_026540.1
            ProteinModelPortal:Q81VD8 DNASU:1085970
            EnsemblBacteria:EBBACT00000008300 EnsemblBacteria:EBBACT00000015450
            EnsemblBacteria:EBBACT00000024239 GeneID:1085970 GeneID:2815661
            GeneID:2850601 KEGG:ban:BA_0271 KEGG:bar:GBAA_0271 KEGG:bat:BAS0256
            OMA:EAKEMPI ProtClustDB:CLSK915759
            BioCyc:BANT260799:GJAJ-293-MONOMER
            BioCyc:BANT261594:GJ7F-302-MONOMER Uniprot:Q81VD8
        Length = 233

 Score = 132 (51.5 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 33/107 (30%), Positives = 57/107 (53%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +LVVDD+     ++   L+   Y+V +    E  L +L   +N   +V+ D+ MP +DG 
Sbjct:     6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLE--ENEVHLVVLDIMMPKVDGI 63

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
              +  ++  E ++P+IM+S      D + G+T GA +Y+ KP    EL
Sbjct:    64 HMCMKIREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLEL 110


>UNIPROTKB|Q9WYT9 [details] [associations]
            symbol:TM_0468 "Response regulator" species:243274
            "Thermotoga maritima MSB8" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
            SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
            GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            EMBL:AE000512 GenomeReviews:AE000512_GR KO:K02485 EMBL:AGIJ01000001
            PIR:D72374 RefSeq:NP_228278.1 PDB:3DGE PDB:3DGF PDB:3GL9
            PDBsum:3DGE PDBsum:3DGF PDBsum:3GL9 IntAct:Q9WYT9 GeneID:897499
            KEGG:tma:TM0468 PATRIC:23935833 OMA:WKRIPVI ProtClustDB:CLSK875163
            EvolutionaryTrace:Q9WYT9 Uniprot:Q9WYT9
        Length = 122

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 35/106 (33%), Positives = 61/106 (57%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             +VL+VDD  +  +I+   L+K  YEV +    +IAL+  ++S+   D+++ D+ MP MDG
Sbjct:     4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALE--KLSEFTPDLIVLDIMMPVMDG 61

Query:    79 F----KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
             F    KL E+   +  +PVI+++  G  +D    ++ GA   + KP
Sbjct:    62 FTVLKKLQEKEEWKR-IPVIVLTAKGGEEDESLALSLGARKVMRKP 106


>TIGR_CMR|CHY_2567 [details] [associations]
            symbol:CHY_2567 "DNA-binding response regulator"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
            Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
            GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
            GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483 RefSeq:YP_361360.1
            ProteinModelPortal:Q3A924 SMR:Q3A924 STRING:Q3A924 GeneID:3728531
            KEGG:chy:CHY_2567 PATRIC:21278183
            BioCyc:CHYD246194:GJCN-2566-MONOMER Uniprot:Q3A924
        Length = 236

 Score = 132 (51.5 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 30/108 (27%), Positives = 58/108 (53%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++L+VDD+P  + +++  L K  YEV        AL+     K   D+++ D  MP+M G
Sbjct:     4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKP--DLIVLDWMMPEMSG 61

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
              ++  ++  +  +P+IM++      D + G   G  +Y++KP  ++EL
Sbjct:    62 IEVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLREL 109


>TIGR_CMR|GSU_2946 [details] [associations]
            symbol:GSU_2946 "DNA-binding heavy metal response
            regulator" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR006291
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07665 TIGRFAMs:TIGR01387
            HSSP:Q9WYN0 RefSeq:NP_953988.1 ProteinModelPortal:Q748Q5
            GeneID:2688389 KEGG:gsu:GSU2946 PATRIC:22028753 OMA:GYMLEIP
            ProtClustDB:CLSK743174 BioCyc:GSUL243231:GH27-2897-MONOMER
            Uniprot:Q748Q5
        Length = 223

 Score = 131 (51.2 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 32/110 (29%), Positives = 61/110 (55%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +RVL+++D+      L+K   +  +        +  L + R ++N YD++I D+ +P  D
Sbjct:     1 MRVLIIEDEKKAAAYLQKGFAENGFTADTAASGDDGLHLAR-TEN-YDLIILDIMLPGRD 58

Query:    78 GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G+++ E++  E  ++PVI +S      D ++G+  GA +YL+KP    EL
Sbjct:    59 GWEVLEELRKEGSEVPVIYLSARDAVHDRVRGLELGADDYLVKPFAFSEL 108


>TIGR_CMR|CHY_1855 [details] [associations]
            symbol:CHY_1855 "sigma-54 dependent transcriptional
            regulator/response regulator" species:246194 "Carboxydothermus
            hydrogenoformans Z-2901" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
            GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
            Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
            HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
            PROSITE:PS00675 PROSITE:PS00688 RefSeq:YP_360675.1
            ProteinModelPortal:Q3AB09 STRING:Q3AB09 GeneID:3727631
            KEGG:chy:CHY_1855 PATRIC:21276809 KO:K02481 OMA:NTRELFH
            ProtClustDB:CLSK928866 BioCyc:CHYD246194:GJCN-1854-MONOMER
            Uniprot:Q3AB09
        Length = 443

 Score = 138 (53.6 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 38/127 (29%), Positives = 68/127 (53%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             ++VLVVDD+  +  +L + L +  YEV      E AL  L+  +  + + I D+ MP +D
Sbjct:     5 IKVLVVDDEENFRDLLIQRLTRKGYEVKGAATGEEALQFLK--EETFHLAIFDIKMPGID 62

Query:    78 GFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
             G +L ++   L+ +L VI+++  G  +  +  +  GA +YL KP  + EL    Q   ++
Sbjct:    63 GIELLQRARQLDENLQVIILTGHGTIESAIGAMKLGAYDYLTKPCNLAELEITLQKAYEK 122

Query:   137 PKPFEES 143
              +  EE+
Sbjct:   123 RQLLEEN 129


>UNIPROTKB|P0AFU4 [details] [associations]
            symbol:glrR "GlrR DNA-binding transcriptional activator"
            species:83333 "Escherichia coli K-12" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0035556 "intracellular signal
            transduction" evidence=IEA;IMP] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA;IEP] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000160 "phosphorelay signal transduction system"
            evidence=IEA;IMP] [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;IMP] [GO:0006351 "transcription,
            DNA-dependent" evidence=ISS;IDA] InterPro:IPR001789
            InterPro:IPR002078 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 PROSITE:PS50045 PROSITE:PS50110
            SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0005737
            GO:GO:0006355 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351
            Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:U36841 GO:GO:0017111
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
            HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
            InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
            EMBL:M16778 EMBL:S67014 EMBL:Z21843 PIR:A65033 RefSeq:NP_417049.1
            RefSeq:YP_490782.1 ProteinModelPortal:P0AFU4 SMR:P0AFU4
            IntAct:P0AFU4 MINT:MINT-1317436 PRIDE:P0AFU4
            EnsemblBacteria:EBESCT00000000551 EnsemblBacteria:EBESCT00000014286
            GeneID:12930208 GeneID:947042 KEGG:ecj:Y75_p2507 KEGG:eco:b2554
            PATRIC:32120507 EchoBASE:EB1262 EcoGene:EG11285 KO:K07715
            OMA:FAEIQKH ProtClustDB:PRK15115 BioCyc:EcoCyc:EG11285-MONOMER
            BioCyc:ECOL316407:JW2538-MONOMER Genevestigator:P0AFU4
            Uniprot:P0AFU4
        Length = 444

 Score = 138 (53.6 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 39/126 (30%), Positives = 60/126 (47%)

Query:    15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
             PA L  L+VDDDP  L++L   L    Y V         L +L   K   D+VISD+ M 
Sbjct:     5 PAHL--LLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREK--VDLVISDLRMD 60

Query:    75 DMDGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
             +MDG +L  ++  ++  +PVI+++  G   D +     G  ++L KP+    L       
Sbjct:    61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120

Query:   134 AQQPKP 139
              +Q  P
Sbjct:   121 LEQSAP 126


>TIGR_CMR|GSU_0008 [details] [associations]
            symbol:GSU_0008 "sensory box histidine kinase/response
            regulator" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
            InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
            InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
            PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091
            SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
            InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
            GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
            GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
            Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
            SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
            HSSP:P06143 RefSeq:NP_951070.1 ProteinModelPortal:Q74H84
            GeneID:2688683 KEGG:gsu:GSU0008 PATRIC:22022753
            HOGENOM:HOG000135130 OMA:HRFEAGR ProtClustDB:CLSK924354
            BioCyc:GSUL243231:GH27-8-MONOMER Uniprot:Q74H84
        Length = 516

 Score = 139 (54.0 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 34/113 (30%), Positives = 58/113 (51%)

Query:    16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
             +G +V +VDD+     IL+  L    Y   +      ALD L   +  +D+V+ D+ MP 
Sbjct:     2 SGYKVFIVDDEADIALILKLQLEDAGYRTMRARDGIEALDALE--RESFDLVLLDIRMPR 59

Query:    76 MDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
             MDG ++ E++     DL VIMM+  G     ++ +  GA +Y+ KP    +++
Sbjct:    60 MDGIEVLERIRDRWPDLVVIMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMK 112


>TIGR_CMR|CHY_1413 [details] [associations]
            symbol:CHY_1413 "DNA-binding response regulator"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
            Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
            GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
            GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_360245.1
            ProteinModelPortal:Q3AC89 SMR:Q3AC89 STRING:Q3AC89 GeneID:3728069
            KEGG:chy:CHY_1413 PATRIC:21275957 OMA:EHAWIAT
            BioCyc:CHYD246194:GJCN-1412-MONOMER Uniprot:Q3AC89
        Length = 228

 Score = 131 (51.2 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 35/133 (26%), Positives = 71/133 (53%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L+VDD+     +L   L K  + V +    + AL   R S++  D++I D+ +P++DG 
Sbjct:     4 ILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALK--RFSEHKIDLIILDLMLPEIDGM 61

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKP 139
             ++ +++     +P+IM++  G   D + G+  GA +Y++KP   +E+    + V ++   
Sbjct:    62 EIAKEIRKTSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRRSSG 121

Query:   140 FEESDDSYSVNQG 152
               E + S  + QG
Sbjct:   122 IPEKEASSVIKQG 134


>TIGR_CMR|CPS_1426 [details] [associations]
            symbol:CPS_1426 "transcriptional regulatory protein RstA"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
            GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_268169.1
            ProteinModelPortal:Q485U6 STRING:Q485U6 GeneID:3518469
            KEGG:cps:CPS_1426 PATRIC:21466063 ProtClustDB:CLSK749833
            BioCyc:CPSY167879:GI48-1507-MONOMER Uniprot:Q485U6
        Length = 248

 Score = 132 (51.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 35/107 (32%), Positives = 60/107 (56%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L+V+DD      +   L    ++VT C+R + A+D+++ S N  DIV+ D  +P MDG 
Sbjct:     9 ILLVEDDIDLAEWIADYLIGREFKVTTCHRGDDAVDLIQ-SLNP-DIVLLDGMLPGMDGL 66

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
              + + V    D P+IM++      D + G+  GA +Y+ KP+R + L
Sbjct:    67 DVCKTVRATFDNPIIMITARDEEIDEVLGLEMGADDYITKPVRARVL 113


>UNIPROTKB|Q8EF67 [details] [associations]
            symbol:cheY "Chemotaxis signal transduction system response
            regulator CheY" species:211586 "Shewanella oneidensis MR-1"
            [GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
            "chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
            GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
            OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
            GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
            ProtClustDB:CLSK906601 Uniprot:Q8EF67
        Length = 121

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 32/111 (28%), Positives = 59/111 (53%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++L+VDD     +++E  L+   Y+VT       ALD+   S   +D +++D +MP MDG
Sbjct:     4 KILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLC--SSQRFDFILTDQNMPRMDG 61

Query:    79 FKLHEQV-GLE--MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
               L + + G+   M  P+IM++ +       +G   GA  +++KP   ++L
Sbjct:    62 LTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKL 112


>TIGR_CMR|SO_2120 [details] [associations]
            symbol:SO_2120 "chemotaxis protein CheY" species:211586
            "Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
            activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
            GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
            HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
            ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
            PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
        Length = 121

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 32/111 (28%), Positives = 59/111 (53%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++L+VDD     +++E  L+   Y+VT       ALD+   S   +D +++D +MP MDG
Sbjct:     4 KILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLC--SSQRFDFILTDQNMPRMDG 61

Query:    79 FKLHEQV-GLE--MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
               L + + G+   M  P+IM++ +       +G   GA  +++KP   ++L
Sbjct:    62 LTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKL 112


>ASPGD|ASPL0000078160 [details] [associations]
            symbol:AN4818 species:162425 "Emericella nidulans"
            [GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA]
            [GO:0016020 "membrane" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0000160
            "phosphorelay signal transduction system" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] InterPro:IPR003018 InterPro:IPR001789
            InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
            Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
            PROSITE:PS50110 SMART:SM00065 SMART:SM00387 SMART:SM00388
            SMART:SM00448 InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020
            GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0023014
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
            Gene3D:3.30.565.10 SUPFAM:SSF55874 PROSITE:PS50109 eggNOG:COG0642
            EMBL:BN001303 EMBL:AACD01000081 OrthoDB:EOG415KNG
            RefSeq:XP_662422.1 ProteinModelPortal:Q5B3R2
            EnsemblFungi:CADANIAT00005601 GeneID:2872614 KEGG:ani:AN4818.2
            HOGENOM:HOG000158982 OMA:ARELYRY Uniprot:Q5B3R2
        Length = 1243

 Score = 143 (55.4 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 37/137 (27%), Positives = 72/137 (52%)

Query:     3 PASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKC-LYEVTKCNRAEIALDMLRMSK 61
             P + S A  ++ P   ++LVVDD+ I L ++   LRK  L  +      ++A+D +  + 
Sbjct:  1101 PVAESTAKLERTP---KILVVDDNFINLNLMLTFLRKRRLQYLDSAENGQLAVDAVERTP 1157

Query:    62 NGYDIVISDVHMPDMDGFK-------LHEQVGLEMDLPVIMMSVDGCT--QDVMKGVTHG 112
              GYD++  D+ MP M+GF+       +  + G E+  P  ++++ G +  +D  + ++ G
Sbjct:  1158 GGYDLIFMDISMPVMNGFEATRAIRAIERERGTELPTPATIIALTGLSSVRDESEALSSG 1217

Query:   113 ACNYLLKPIRIKELRNI 129
                +L KP+  KE+  +
Sbjct:  1218 FDLFLTKPVSFKEVSKL 1234


>TIGR_CMR|BA_3067 [details] [associations]
            symbol:BA_3067 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P06628
            RefSeq:NP_845397.1 RefSeq:YP_019708.1 RefSeq:YP_029111.1
            ProteinModelPortal:Q81NV5 DNASU:1088217
            EnsemblBacteria:EBBACT00000009080 EnsemblBacteria:EBBACT00000017281
            EnsemblBacteria:EBBACT00000021032 GeneID:1088217 GeneID:2817324
            GeneID:2850761 KEGG:ban:BA_3067 KEGG:bar:GBAA_3067 KEGG:bat:BAS2853
            OMA:LTKEHFF ProtClustDB:CLSK886597
            BioCyc:BANT260799:GJAJ-2916-MONOMER
            BioCyc:BANT261594:GJ7F-3019-MONOMER Uniprot:Q81NV5
        Length = 223

 Score = 130 (50.8 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 32/108 (29%), Positives = 62/108 (57%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L+V+DD I   +L+K+L++  Y V         LD++    +  D+V+ DV +P  DG+
Sbjct:     6 ILIVEDDLIIGDLLQKILQREKYNVYWEKEGRKVLDII----HEIDLVVMDVMLPGEDGY 61

Query:    80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             ++ +++  L +++P+I +S        +KG+T G   Y++KP   +EL
Sbjct:    62 QITKKIKNLGLNIPIIFLSARNDMDSKLKGLTIGE-EYMIKPFDPREL 108


>TIGR_CMR|CHY_1125 [details] [associations]
            symbol:CHY_1125 "response regulator" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR005471 Pfam:PF00072 Pfam:PF09339
            PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            RefSeq:YP_359971.1 ProteinModelPortal:Q3AD13 STRING:Q3AD13
            GeneID:3727659 KEGG:chy:CHY_1125 PATRIC:21275390
            HOGENOM:HOG000131195 OMA:RNEYLWI ProtClustDB:CLSK289825
            BioCyc:CHYD246194:GJCN-1124-MONOMER Uniprot:Q3AD13
        Length = 205

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 32/110 (29%), Positives = 59/110 (53%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +RVL++DDD      + +++    +E  K     I ++     K   D+V+ D HMP +D
Sbjct:     1 MRVLIIDDDEGIRYTVGEIIAFMGWEAIKAENGAIGIEKFVREKP--DMVLVDYHMPALD 58

Query:    78 GFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G    E++  ++  +P+I+++VD   Q   K +  GA ++ LKPI+  +L
Sbjct:    59 GLDTVERIREIDQGVPIIVLTVDERQQIADKFLEVGASDFALKPIKAPDL 108


>TIGR_CMR|GSU_0403 [details] [associations]
            symbol:GSU_0403 "chemotaxis protein CheY" species:243231
            "Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
            activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
            RefSeq:NP_951462.1 ProteinModelPortal:Q74G46 GeneID:2685717
            KEGG:gsu:GSU0403 PATRIC:22023550 OMA:MEGKSID ProtClustDB:CLSK827806
            BioCyc:GSUL243231:GH27-435-MONOMER Uniprot:Q74G46
        Length = 120

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 31/110 (28%), Positives = 61/110 (55%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLR-MSKNGYDIVISDVHMPDMDG 78
             VL+VDD     +I+ + LR+    V +   A   ++ L  +S    D+++SD++MP+MDG
Sbjct:     4 VLIVDDSSTMRKIISRSLRQAGLPVDEIFEAGDGIEGLNVLSGKSVDLILSDINMPNMDG 63

Query:    79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMK-GVTHGACNYLLKPIRIKEL 126
              +  +Q        P++M++ +G  +D++K  ++ GA + + KP    +L
Sbjct:    64 LEFIKQARANGHKAPIVMITTEG-GEDILKEAISSGASDSIKKPFTPDQL 112


>TIGR_CMR|SO_3196 [details] [associations]
            symbol:SO_3196 "response regulator" species:211586
            "Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
            GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P10958 RefSeq:NP_718751.1
            ProteinModelPortal:Q8ECE7 GeneID:1170890 KEGG:son:SO_3196
            PATRIC:23526076 HOGENOM:HOG000289704 OMA:GLLDWGK
            ProtClustDB:CLSK907046 Uniprot:Q8ECE7
        Length = 367

 Score = 135 (52.6 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 32/103 (31%), Positives = 58/103 (56%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L V+DDP++ +I+   L     +V +    E  L  +   +  +DI+++D+ MP + G 
Sbjct:     8 ILWVEDDPVFRQIVATFLSGRGAQVVQAGDGEQGL--IHFKQQRFDIILADLSMPKLGGL 65

Query:    80 K-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
               L E   LE  +P I++S +    DV++ +  GAC+YL+KP+
Sbjct:    66 DMLKEMSKLEPLVPSIVISGNNVMADVVEALRIGACDYLVKPV 108


>TIGR_CMR|BA_5715 [details] [associations]
            symbol:BA_5715 "DNA-binding response regulator YycF"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
            RefSeq:NP_847861.1 RefSeq:YP_022401.1 RefSeq:YP_031556.1
            ProteinModelPortal:Q81JJ0 SMR:Q81JJ0 IntAct:Q81JJ0 DNASU:1085472
            EnsemblBacteria:EBBACT00000008903 EnsemblBacteria:EBBACT00000016684
            EnsemblBacteria:EBBACT00000023802 GeneID:1085472 GeneID:2816053
            GeneID:2852841 KEGG:ban:BA_5715 KEGG:bar:GBAA_5715 KEGG:bat:BAS5319
            KO:K07668 OMA:KEQESND ProtClustDB:CLSK2391406
            BioCyc:BANT260799:GJAJ-5392-MONOMER
            BioCyc:BANT261594:GJ7F-5568-MONOMER Uniprot:Q81JJ0
        Length = 235

 Score = 130 (50.8 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 30/110 (27%), Positives = 61/110 (55%)

Query:    17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             G ++LVVDD+     IL+  L K  +E+   +  + A++  + ++   D+V+ D+ +P  
Sbjct:     3 GKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIE--KATEEQPDMVLLDIMLPGK 60

Query:    77 DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             DG ++  ++    ++P+IM++      D + G+  GA +Y+ KP   +EL
Sbjct:    61 DGLEVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTREL 110


>TAIR|locus:2059718 [details] [associations]
            symbol:WOL "WOODEN LEG" species:3702 "Arabidopsis
            thaliana" [GO:0000155 "phosphorelay sensor kinase activity"
            evidence=IEA] [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA] [GO:0004673 "protein histidine kinase
            activity" evidence=IEA;ISS;IDA] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005886 "plasma membrane" evidence=ISM] [GO:0016020 "membrane"
            evidence=IEA] [GO:0016772 "transferase activity, transferring
            phosphorus-containing groups" evidence=IEA] [GO:0010086 "embryonic
            root morphogenesis" evidence=IMP] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IDA] [GO:0009885 "transmembrane
            histidine kinase cytokinin receptor activity" evidence=IDA]
            [GO:0009736 "cytokinin mediated signaling pathway"
            evidence=RCA;TAS] [GO:0009884 "cytokinin receptor activity"
            evidence=TAS] [GO:0008272 "sulfate transport" evidence=IMP]
            [GO:0016036 "cellular response to phosphate starvation"
            evidence=IMP] [GO:0071329 "cellular response to sucrose stimulus"
            evidence=IMP] [GO:0019955 "cytokine binding" evidence=IDA]
            [GO:0010029 "regulation of seed germination" evidence=RCA;IMP]
            [GO:0048831 "regulation of shoot system development"
            evidence=RCA;IMP] [GO:0010150 "leaf senescence" evidence=IMP]
            [GO:0004721 "phosphoprotein phosphatase activity" evidence=IDA]
            [GO:0006468 "protein phosphorylation" evidence=IGI] [GO:0005515
            "protein binding" evidence=IPI] [GO:0043424 "protein histidine
            kinase binding" evidence=IPI] [GO:0005034 "osmosensor activity"
            evidence=IGI] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0019899 "enzyme binding" evidence=IPI]
            [GO:0019901 "protein kinase binding" evidence=IPI] [GO:0042742
            "defense response to bacterium" evidence=IMP;IDA] [GO:0048509
            "regulation of meristem development" evidence=IMP] [GO:0007231
            "osmosensory signaling pathway" evidence=IMP] [GO:0033500
            "carbohydrate homeostasis" evidence=IMP] [GO:0009744 "response to
            sucrose stimulus" evidence=RCA] [GO:0009749 "response to glucose
            stimulus" evidence=RCA] [GO:0009750 "response to fructose stimulus"
            evidence=RCA] [GO:0031537 "regulation of anthocyanin metabolic
            process" evidence=RCA] [GO:0005783 "endoplasmic reticulum"
            evidence=IDA] InterPro:IPR001789 InterPro:IPR003594
            InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
            Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
            PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
            InterPro:IPR005467 GO:GO:0005783 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355
            GO:GO:0035556 GO:GO:0009414 GO:GO:0042742 GO:GO:0004721
            GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            eggNOG:COG0784 GO:GO:0005034 GO:GO:0000155 Gene3D:1.10.287.130
            Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
            KO:K14489 ProtClustDB:CLSN2687668 GO:GO:0048509 GO:GO:0010029
            GO:GO:0048831 InterPro:IPR006189 Pfam:PF03924 SMART:SM01079
            PROSITE:PS50839 GO:GO:0016036 GO:GO:0071329 EMBL:AJ278528
            EMBL:AJ278529 EMBL:AJ278530 EMBL:AB049934 EMBL:AB049935
            EMBL:AB046871 EMBL:AC007069 EMBL:EF598292 EMBL:EF598293
            EMBL:EF598294 EMBL:EF598295 EMBL:EF598296 EMBL:EF598297
            EMBL:EF598298 EMBL:EF598299 EMBL:EF598300 EMBL:EF598301
            EMBL:EF598302 EMBL:EF598303 EMBL:EF598304 EMBL:EF598305
            EMBL:EF598306 EMBL:EF598307 EMBL:EF598308 EMBL:EF598309
            EMBL:EF598310 EMBL:EF598311 EMBL:EF598312 EMBL:EF598313
            EMBL:EF598314 EMBL:EF598315 IPI:IPI00521925 IPI:IPI00548080
            PIR:F84429 RefSeq:NP_565277.1 RefSeq:NP_849925.1 RefSeq:NP_973396.1
            UniGene:At.10485 PDB:3T4J PDB:3T4K PDB:3T4L PDB:3T4O PDB:3T4Q
            PDB:3T4S PDB:3T4T PDBsum:3T4J PDBsum:3T4K PDBsum:3T4L PDBsum:3T4O
            PDBsum:3T4Q PDBsum:3T4S PDBsum:3T4T ProteinModelPortal:Q9C5U0
            SMR:Q9C5U0 IntAct:Q9C5U0 STRING:Q9C5U0 PaxDb:Q9C5U0 PRIDE:Q9C5U0
            EnsemblPlants:AT2G01830.2 GeneID:814714 KEGG:ath:AT2G01830
            TAIR:At2g01830 InParanoid:Q9C5U0 OMA:ADTVIMK PhylomeDB:Q9C5U0
            BindingDB:Q9C5U0 ChEMBL:CHEMBL6124 EvolutionaryTrace:Q9C5U0
            Genevestigator:Q9C5U0 GO:GO:0019955 GO:GO:0009885 GO:GO:0033500
            GO:GO:0010086 GO:GO:0007231 GO:GO:0000160 GO:GO:0008272
            Uniprot:Q9C5U0
        Length = 1080

 Score = 141 (54.7 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 43/148 (29%), Positives = 68/148 (45%)

Query:     3 PASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN 62
             P  SS A       G ++LVVDD+ +  R+    L+K   EV      ++AL +L++   
Sbjct:   930 PEGSSPATLKSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHT 989

Query:    63 GYDIVISDVHMPDMDGFKLHEQV-----------GLEMDLPVIMMSVDGCTQDVMKGVTH 111
              +D    D+ MP MDGF+   Q+            LE  LP++ M+ D       + +  
Sbjct:   990 -FDACFMDIQMPQMDGFEATRQIRMMEKETKEKTNLEWHLPILAMTADVIHATYEECLKS 1048

Query:   112 GACNYLLKPIRIKELRNIWQHVAQQPKP 139
             G   Y+ KP    E  N+++ VA+  KP
Sbjct:  1049 GMDGYVSKPF---EEENLYKSVAKSFKP 1073


>TIGR_CMR|BA_5504 [details] [associations]
            symbol:BA_5504 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
            RefSeq:NP_847664.1 RefSeq:YP_022171.1 RefSeq:YP_031352.1
            ProteinModelPortal:Q81K35 DNASU:1085148
            EnsemblBacteria:EBBACT00000010087 EnsemblBacteria:EBBACT00000018699
            EnsemblBacteria:EBBACT00000023974 GeneID:1085148 GeneID:2819097
            GeneID:2848975 KEGG:ban:BA_5504 KEGG:bar:GBAA_5504 KEGG:bat:BAS5113
            OMA:NMARRVK ProtClustDB:CLSK899140
            BioCyc:BANT260799:GJAJ-5188-MONOMER
            BioCyc:BANT261594:GJ7F-5366-MONOMER Uniprot:Q81K35
        Length = 223

 Score = 129 (50.5 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 34/110 (30%), Positives = 56/110 (50%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +++LVVDD+     ++   L    YEV     A    ++L     G D++I DV +PD D
Sbjct:     1 MKILVVDDESSIRNLIRMQLEMEGYEVLT---AADGREVLERWNEGPDVLILDVMLPDTD 57

Query:    78 GFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G++L       + D+PV+M++      D + G+  GA +Y+ KP    EL
Sbjct:    58 GYELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAEL 107


>DICTYBASE|DDB_G0291424 [details] [associations]
            symbol:DDB_G0291424 "Transcription factor SKN7"
            species:44689 "Dictyostelium discoideum" [GO:0035556 "intracellular
            signal transduction" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0000160
            "phosphorelay signal transduction system" evidence=IEA] [GO:0000156
            "phosphorelay response regulator activity" evidence=IEA]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            dictyBase:DDB_G0291424 EMBL:AAFI02000177 GO:GO:0006355
            GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG0784 RefSeq:XP_635201.1
            ProteinModelPortal:Q54EN9 EnsemblProtists:DDB0183884 GeneID:8628146
            KEGG:ddi:DDB_G0291424 InParanoid:Q54EN9 OMA:MCANITD
            ProtClustDB:CLSZ2429563 Uniprot:Q54EN9
        Length = 902

 Score = 140 (54.3 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 35/145 (24%), Positives = 78/145 (53%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             VL+V+D+P+ ++++ K++ +  ++V   +  ++ALDM + +   Y++V+ D+ MP MDG 
Sbjct:   711 VLLVEDNPLQIKVISKVMERYNFDVEVASNGQMALDMFKANPR-YELVLMDMIMPIMDGL 769

Query:    80 K---LHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
                 L  +   E  L   PVI+ + D      +  +  G  +++ KP+  + +   W+ +
Sbjct:   770 TATMLIREYERERGLKRTPVIIQTADSRESHKLICLAAGCDDFMTKPLDKRFVDRAWKLL 829

Query:   134 AQQPKPFEESDDSYSVNQGNWRTSN 158
              ++   F+ +D++ + N  N   +N
Sbjct:   830 NEE---FDSTDNNNNNNNNNNNNNN 851


>TIGR_CMR|GSU_2041 [details] [associations]
            symbol:GSU_2041 "sigma-54 dependent DNA-binding response
            regulator" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489 KO:K07714
            InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
            PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
            RefSeq:NP_953090.1 ProteinModelPortal:Q74BK0 GeneID:2687998
            KEGG:gsu:GSU2041 PATRIC:22026943 OMA:HMLQVML ProtClustDB:CLSK828703
            BioCyc:GSUL243231:GH27-1944-MONOMER Uniprot:Q74BK0
        Length = 455

 Score = 136 (52.9 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 39/109 (35%), Positives = 54/109 (49%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             R+LVVDD+     +L  MLRK  YE  +    E AL   + S   YD ++ D+ MP MDG
Sbjct:     4 RILVVDDEENMRHMLCAMLRKQGYEAVEAADGEAAL--AQASAAAYDFILCDIRMPIMDG 61

Query:    79 FK-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
                L      E+   VIMMS  G     +  +  GA +Y+ KP +  E+
Sbjct:    62 VGFLRTFQKAELPGTVIMMSAYGTVDAAIACMKEGAYDYVSKPFKNDEI 110


>TIGR_CMR|NSE_0512 [details] [associations]
            symbol:NSE_0512 "response regulator/GGDEF domain protein"
            species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
            SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
            SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
            SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG3706 EMBL:CP000237
            GenomeReviews:CP000237_GR KO:K02488 HOGENOM:HOG000167204
            ProtClustDB:PRK09581 RefSeq:YP_506396.1 ProteinModelPortal:Q2GDQ0
            STRING:Q2GDQ0 GeneID:3931788 KEGG:nse:NSE_0512 PATRIC:22681073
            OMA:TELGIND BioCyc:NSEN222891:GHFU-532-MONOMER Uniprot:Q2GDQ0
        Length = 456

 Score = 136 (52.9 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 32/106 (30%), Positives = 63/106 (59%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +LVVDD P  ++ILE  L    Y+V   +    A+++ +  +   D+++ DV MP+MDGF
Sbjct:     5 ILVVDDIPSNIKILEIKLTAKYYQVITASSGIAAIELAKQHQP--DVILLDVMMPEMDGF 62

Query:    80 KLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
             +   ++  +   M +PVI+++     ++ ++G+  GA ++L+KP +
Sbjct:    63 ETCRRLKSDYATMHIPVIIVTALNDIENKVEGLNSGADDFLVKPAK 108


>TIGR_CMR|BA_3261 [details] [associations]
            symbol:BA_3261 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
            RefSeq:NP_845560.1 RefSeq:YP_019897.1 RefSeq:YP_029285.1
            ProteinModelPortal:Q81NE3 DNASU:1089115
            EnsemblBacteria:EBBACT00000011389 EnsemblBacteria:EBBACT00000014025
            EnsemblBacteria:EBBACT00000020758 GeneID:1089115 GeneID:2818827
            GeneID:2853015 KEGG:ban:BA_3261 KEGG:bar:GBAA_3261 KEGG:bat:BAS3028
            OMA:FELCKKM ProtClustDB:CLSK916983
            BioCyc:BANT260799:GJAJ-3090-MONOMER
            BioCyc:BANT261594:GJ7F-3193-MONOMER Uniprot:Q81NE3
        Length = 225

 Score = 129 (50.5 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 31/109 (28%), Positives = 57/109 (52%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             + +L+ DDD     +L   L+K  ++V +    ++A ++L   K    + I D+ MP +D
Sbjct:     4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLE--KENIHLAIVDIMMPFVD 61

Query:    78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G+ L E++    D+PVI+++      D  KG   G  +Y++KP    E+
Sbjct:    62 GYTLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEV 110


>UNIPROTKB|Q06065 [details] [associations]
            symbol:atoC "AtoC transcriptional activator; Az protein
            inhibitor of ODC" species:83333 "Escherichia coli K-12" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] [GO:0000156
            "phosphorelay response regulator activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0035556 "intracellular
            signal transduction" evidence=IEA] [GO:0045893 "positive regulation
            of transcription, DNA-dependent" evidence=ISS;IDA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA;ISS;IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
            evidence=IEA] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0005737 GO:GO:0045893 GO:GO:0035556 EMBL:U00096
            EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
            SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG2204 EMBL:U17902 EMBL:L13078 PIR:B64992
            RefSeq:NP_416724.1 RefSeq:YP_490461.1 ProteinModelPortal:Q06065
            SMR:Q06065 DIP:DIP-9190N IntAct:Q06065 PRIDE:Q06065
            EnsemblBacteria:EBESCT00000003393 EnsemblBacteria:EBESCT00000015461
            GeneID:12932980 GeneID:947444 KEGG:ecj:Y75_p2183 KEGG:eco:b2220
            PATRIC:32119799 EchoBASE:EB1619 EcoGene:EG11668
            HOGENOM:HOG000058489 KO:K07714 OMA:EERRIIM ProtClustDB:PRK11361
            BioCyc:EcoCyc:ATOC-MONOMER BioCyc:ECOL316407:JW2214-MONOMER
            Genevestigator:Q06065 InterPro:IPR025662 InterPro:IPR025943
            InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
            Uniprot:Q06065
        Length = 461

 Score = 136 (52.9 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 39/138 (28%), Positives = 64/138 (46%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             R+L+VDD+    R+L        +E    N    AL +   +    D+V+ D+ MP+MDG
Sbjct:     6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF--ADIHPDVVLMDIRMPEMDG 63

Query:    79 FK-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
              K L E    E   PVI+M+     +  ++ +  GA +Y++KP  + EL  I Q   Q  
Sbjct:    64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query:   138 KPFEESDDSYSVNQGNWR 155
                +E    +     +W+
Sbjct:   124 SMKKEIRHLHQALSTSWQ 141


>TIGR_CMR|SO_4633 [details] [associations]
            symbol:SO_4633 "transcriptional regulatory protein OmpR"
            species:211586 "Shewanella oneidensis MR-1" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
            GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07659
            ProtClustDB:PRK09468 OMA:AANSEQM RefSeq:NP_720149.1 HSSP:P03025
            ProteinModelPortal:Q8E8N0 SMR:Q8E8N0 GeneID:1172214
            KEGG:son:SO_4633 PATRIC:23528927 Uniprot:Q8E8N0
        Length = 241

 Score = 130 (50.8 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 32/109 (29%), Positives = 60/109 (55%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++LVVDDD     +LE+ L +  Y+V     AE  +D L + +  + +++ D+ +P  DG
Sbjct:     7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAE-QMDRL-LERENFHLIVLDLMLPGEDG 64

Query:    79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
               +  ++  +   +P++M++  G   D + G+  GA +YL KP   +EL
Sbjct:    65 LSICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPREL 113


>TIGR_CMR|GSU_1117 [details] [associations]
            symbol:GSU_1117 "response regulator" species:243231
            "Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
            GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
            RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
            KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
            BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
        Length = 127

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 32/113 (28%), Positives = 65/113 (57%)

Query:    19 RVLVVDDDPIWLRI-LEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             ++LVVDD+    RI L K+L +  +EV   +    AL+ L+  +   +++++D++MP+M+
Sbjct:     8 KILVVDDEEN-ARIGLTKLLEREGFEVASVSNGFEALNYLQQRE--VNVIVTDINMPEMN 64

Query:    78 GFKLHEQVGLEMDLP-VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
             G     ++        VIM++  G  +  ++ +  GA  Y+ KP+++ EL++I
Sbjct:    65 GITFLRELNKSFPRSNVIMITAYGGVESYIEAMNLGAFEYINKPVKLDELKSI 117


>TIGR_CMR|CPS_4166 [details] [associations]
            symbol:CPS_4166 "response regulator" species:167879
            "Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789
            InterPro:IPR003594 Pfam:PF00072 Pfam:PF02518 PROSITE:PS50110
            SMART:SM00387 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
            GO:GO:0035556 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
            Gene3D:3.30.565.10 SUPFAM:SSF55874 RefSeq:YP_270818.1
            ProteinModelPortal:Q47WK4 STRING:Q47WK4 GeneID:3522071
            KEGG:cps:CPS_4166 PATRIC:21471193
            BioCyc:CPSY167879:GI48-4176-MONOMER Uniprot:Q47WK4
        Length = 508

 Score = 136 (52.9 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 40/125 (32%), Positives = 71/125 (56%)

Query:     1 MSPASSSVAVSDQFPAG-LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRM 59
             +S   +S   S +   G L VLVVDD    + I+++++ K  Y V     A+ A+ +  +
Sbjct:   137 LSRTINSKRFSQKVHCGELNVLVVDDIADNIAIIKELI-KDKYRVKAALNAKTAMKIC-L 194

Query:    60 SKNGYDIVISDVHMPDMDGFKLHEQVG---LEMDLPVIMMSVDGCTQDVMKGVTHGACNY 116
             S    D+++ D+ MP++DG  L +Q+    L  ++ VI ++    T+DV+KG++ GA +Y
Sbjct:   195 SDLPPDLILLDIMMPEVDGLTLCKQLKENPLTQNIVVIFLTALSETEDVVKGLSLGAVDY 254

Query:   117 LLKPI 121
             + KPI
Sbjct:   255 ITKPI 259


>TIGR_CMR|SPO_0022 [details] [associations]
            symbol:SPO_0022 "response regulator" species:246200
            "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
            SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
            GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0008152
            GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            SUPFAM:SSF81606 RefSeq:YP_165295.1 ProteinModelPortal:Q5LWH9
            GeneID:3194721 KEGG:sil:SPO0022 PATRIC:23373275
            HOGENOM:HOG000291805 OMA:ERKWGDL ProtClustDB:CLSK933114
            Uniprot:Q5LWH9
        Length = 445

 Score = 135 (52.6 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 40/123 (32%), Positives = 64/123 (52%)

Query:     9 AVSDQFPAGLR-VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIV 67
             A +D  P  +R VLVVDD  +  RIL   L+K  +EV +    E A+++   +    D+V
Sbjct:    31 AQTDMEPGAIRRVLVVDDSRLQRRILSSSLKKWGFEVIEAESGEEAMEICARAMP--DLV 88

Query:    68 ISDVHMPDMDGFKLHE---QVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIK 124
             +SD  MP M G    E   Q+  +     I+++      +V +G+  GA ++L+KP+   
Sbjct:    89 LSDWVMPGMSGVDFCEAFRQLNSDRYCYFILLTSKSEKNEVAQGLDAGADDFLIKPVSSD 148

Query:   125 ELR 127
             ELR
Sbjct:   149 ELR 151


>TIGR_CMR|GSU_1320 [details] [associations]
            symbol:GSU_1320 "sigma-54 dependent DNA-binding response
            regulator" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
            InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
            PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K02481
            HSSP:P06143 RefSeq:NP_952373.2 GeneID:2686471 KEGG:gsu:GSU1320
            PATRIC:22025417 ProtClustDB:CLSK828298
            BioCyc:GSUL243231:GH27-1307-MONOMER Uniprot:Q74DJ6
        Length = 461

 Score = 135 (52.6 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 34/110 (30%), Positives = 58/110 (52%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             RVL+VDDD    R+LE  L++  Y+V      E  L +    +    +V++D+ MP M G
Sbjct:    10 RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLF--DERSPALVVTDLKMPGMGG 67

Query:    79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
             F+L +++ G   D  VI+++  G  +  +  +  GA +Y+ KP     L+
Sbjct:    68 FRLLQEIKGRSPDTAVIVITAFGAVETAVDAMKAGAYDYITKPFNRDALK 117


>TIGR_CMR|BA_2212 [details] [associations]
            symbol:BA_2212 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
            RefSeq:NP_844604.1 RefSeq:YP_018854.1 RefSeq:YP_028319.1
            ProteinModelPortal:Q81R46 DNASU:1085543
            EnsemblBacteria:EBBACT00000012844 EnsemblBacteria:EBBACT00000018535
            EnsemblBacteria:EBBACT00000022147 GeneID:1085543 GeneID:2815122
            GeneID:2848498 KEGG:ban:BA_2212 KEGG:bar:GBAA_2212 KEGG:bat:BAS2056
            OMA:IRATESK ProtClustDB:CLSK918052
            BioCyc:BANT260799:GJAJ-2124-MONOMER
            BioCyc:BANT261594:GJ7F-2201-MONOMER Uniprot:Q81R46
        Length = 227

 Score = 128 (50.1 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 29/112 (25%), Positives = 64/112 (57%)

Query:    17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG-YDIVISDVHMPD 75
             G R+L+V+D+    R+++  L    +E  +   A+   + +    NG +D+++ DV +P+
Sbjct:     2 GERILIVEDEEKIARVVQLELE---FEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPN 58

Query:    76 MDGFKLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             + G ++  ++ L+   +P+I+++      D + G+  GA +Y+ KP +I+EL
Sbjct:    59 ISGLEVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEEL 110


>TAIR|locus:2170723 [details] [associations]
            symbol:ARR6 "response regulator 6" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
            stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
            pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
            HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
            EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
            IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
            UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
            STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
            KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
            OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
            GermOnline:AT5G62920 Uniprot:Q9ZWS6
        Length = 186

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 34/127 (26%), Positives = 71/127 (55%)

Query:    15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS---KN-GYD----- 65
             P  L VL VDD  +  + +E++LR    +VT  + A  AL  L +    K+ G++     
Sbjct:    22 PDPLHVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKSVGFEDLKVN 81

Query:    66 IVISDVHMPDMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
             ++++D  MP M G++L +++       ++PV++MS +     + + +  GA ++LLKP++
Sbjct:    82 LIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPVK 141

Query:   123 IKELRNI 129
             + +++ +
Sbjct:   142 LSDVKRL 148


>SGD|S000001249 [details] [associations]
            symbol:SKN7 "Nuclear response regulator and transcription
            factor" species:4932 "Saccharomyces cerevisiae" [GO:0043565
            "sequence-specific DNA binding" evidence=IEA;IDA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA;IDA;IMP] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0043619 "regulation of transcription from RNA polymerase II
            promoter in response to oxidative stress" evidence=IMP] [GO:0035556
            "intracellular signal transduction" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA;IPI]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA;IMP;IDA;IPI] [GO:0008361 "regulation of cell
            size" evidence=IMP] [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;IMP;IDA] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0006950 "response to stress"
            evidence=IEA] [GO:0000304 "response to singlet oxygen"
            evidence=IMP] [GO:0006970 "response to osmotic stress"
            evidence=TAS] InterPro:IPR000232 InterPro:IPR001789
            InterPro:IPR014402 Pfam:PF00072 Pfam:PF00447 PIRSF:PIRSF002595
            PRINTS:PR00056 PROSITE:PS00434 PROSITE:PS50110 SMART:SM00415
            SMART:SM00448 SGD:S000001249 GO:GO:0005634 EMBL:BK006934
            GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0008361 GO:GO:0006970 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000304
            GO:GO:0043619 EMBL:U00029 RefSeq:NP_012078.3 GeneID:856615
            KEGG:sce:YHR208W KO:K00826 GeneTree:ENSGT00610000087034
            RefSeq:NP_012076.3 GeneID:856613 KEGG:sce:YHR206W KO:K15859
            OMA:QHGMNDI OrthoDB:EOG4TMV98 EMBL:U00485 EMBL:X83031 EMBL:AY723828
            PIR:A49344 ProteinModelPortal:P38889 SMR:P38889 DIP:DIP-2403N
            IntAct:P38889 STRING:P38889 PaxDb:P38889 PeptideAtlas:P38889
            EnsemblFungi:YHR206W CYGD:YHR206w HOGENOM:HOG000248776
            NextBio:982535 Genevestigator:P38889 GermOnline:YHR206W
            Uniprot:P38889
        Length = 622

 Score = 136 (52.9 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 35/116 (30%), Positives = 61/116 (52%)

Query:    17 GLRVLVVDDDPIWLRILEKMLRK--CLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
             G  VL+V+DD + +++  K LRK  C  +V     + I+     + K  YD+V+ D+ MP
Sbjct:   376 GFHVLLVEDDAVSIQLCSKFLRKYGCTVQVVSDGLSAIST----LEKYRYDLVLMDIVMP 431

Query:    75 DMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
             ++DG      V   + + P+I M+ +   QD++  + HG  + L KP    +L +I
Sbjct:   432 NLDGATATSIVRSFDNETPIIAMTGNIMNQDLITYLQHGMNDILAKPFTRDDLHSI 487


>TIGR_CMR|CPS_1388 [details] [associations]
            symbol:CPS_1388 "transcriptional regulatory protein PhoP"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
            EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            HOGENOM:HOG000034815 KO:K07660 RefSeq:YP_268131.1
            ProteinModelPortal:Q485Y4 STRING:Q485Y4 GeneID:3519903
            KEGG:cps:CPS_1388 PATRIC:21465991 OMA:KASTMIN
            ProtClustDB:CLSK907750 BioCyc:CPSY167879:GI48-1469-MONOMER
            Uniprot:Q485Y4
        Length = 224

 Score = 127 (49.8 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 33/110 (30%), Positives = 61/110 (55%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +R+L+V+DD    + L+K L    Y V   +  EIAL   +  +  YDI + D+ +P +D
Sbjct:     1 MRLLLVEDDQALQQELQKQLLLQNYSVDVASDGEIAL--FQGLEYDYDIAVIDLGLPKID 58

Query:    78 GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G  + + +  +  + P+++++     QD + G+  GA +YL KP  ++EL
Sbjct:    59 GTTVVKALREKGRNFPILILTARDRWQDKVSGLDAGADDYLTKPFHVEEL 108


>UNIPROTKB|Q884Y0 [details] [associations]
            symbol:fleR "Sigma-54 dependent transcriptional
            regulator/response regulator FleR" species:223283 "Pseudomonas
            syringae pv. tomato str. DC3000" [GO:0001539 "ciliary or flagellar
            motility" evidence=ISS] [GO:0030092 "regulation of flagellum
            assembly" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
            GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG2204
            HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
            InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
            GO:GO:0001539 GO:GO:0030092 KO:K10943 OMA:FQMIIDT
            ProtClustDB:CLSK866333 RefSeq:NP_791779.1 HSSP:P41789
            ProteinModelPortal:Q884Y0 GeneID:1183601 KEGG:pst:PSPTO_1956
            PATRIC:19995186 BioCyc:PSYR223283:GJIX-1996-MONOMER Uniprot:Q884Y0
        Length = 471

 Score = 134 (52.2 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 43/143 (30%), Positives = 66/143 (46%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             + VL+V+DD      L + L    Y       AE AL  +      + +VISDV+MP MD
Sbjct:     3 INVLLVEDDRSLREALGETLELAGYGYQAVGSAEEAL--VAAEAQPFSLVISDVNMPGMD 60

Query:    78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL-RNIWQHVAQ 135
             G +L   +      LPV++M+  G     +  +  GA +YL+KP   K L   + +H   
Sbjct:    61 GHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIALVARHALG 120

Query:   136 QPKPFEESDDSYSVNQGNWRTSN 158
             +  P  ESD   +V   + +  N
Sbjct:   121 RLGP-AESDGPIAVEPASIQLLN 142


>UNIPROTKB|Q9KQ67 [details] [associations]
            symbol:VC_2135 "Sigma-54 dependent response regulator"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0001539 "ciliary or flagellar motility" evidence=ISS]
            [GO:0030092 "regulation of flagellum assembly" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
            InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
            Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
            SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351
            GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
            InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
            GO:GO:0030092 KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789
            OMA:NWPNLPV PIR:G82114 RefSeq:NP_231766.1 ProteinModelPortal:Q9KQ67
            DNASU:2613391 GeneID:2613391 KEGG:vch:VC2135 PATRIC:20083297
            Uniprot:Q9KQ67
        Length = 479

 Score = 134 (52.2 bits), Expect = 4.1e-08, P = 4.1e-08
 Identities = 40/129 (31%), Positives = 64/129 (49%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             +VL+V+DD      L   L    YE  + + AE AL  L++  +  DIV+SDV M  M G
Sbjct:     7 KVLIVEDDEGLREALIDTLALAGYEWLEADCAEDAL--LKLKSHSVDIVVSDVQMAGMGG 64

Query:    79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
               L   +     +LPV++M+     QD +  +  GA +Y+ KP   + L N+    A  P
Sbjct:    65 LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYA--P 122

Query:   138 KPFEESDDS 146
                +++ D+
Sbjct:   123 VKSDDNGDA 131


>TIGR_CMR|VC_2135 [details] [associations]
            symbol:VC_2135 "flagellar regulatory protein C" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0001539 "ciliary or
            flagellar motility" evidence=ISS] [GO:0030092 "regulation of
            flagellum assembly" evidence=ISS] InterPro:IPR001789
            InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
            InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
            Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
            InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
            GO:GO:0030092 KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789
            OMA:NWPNLPV PIR:G82114 RefSeq:NP_231766.1 ProteinModelPortal:Q9KQ67
            DNASU:2613391 GeneID:2613391 KEGG:vch:VC2135 PATRIC:20083297
            Uniprot:Q9KQ67
        Length = 479

 Score = 134 (52.2 bits), Expect = 4.1e-08, P = 4.1e-08
 Identities = 40/129 (31%), Positives = 64/129 (49%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             +VL+V+DD      L   L    YE  + + AE AL  L++  +  DIV+SDV M  M G
Sbjct:     7 KVLIVEDDEGLREALIDTLALAGYEWLEADCAEDAL--LKLKSHSVDIVVSDVQMAGMGG 64

Query:    79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
               L   +     +LPV++M+     QD +  +  GA +Y+ KP   + L N+    A  P
Sbjct:    65 LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYA--P 122

Query:   138 KPFEESDDS 146
                +++ D+
Sbjct:   123 VKSDDNGDA 131


>TIGR_CMR|SO_3209 [details] [associations]
            symbol:SO_3209 "chemotaxis protein CheY" species:211586
            "Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
            activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
            HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
            GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
            ProtClustDB:CLSK907053 Uniprot:Q8ECD4
        Length = 127

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 35/125 (28%), Positives = 66/125 (52%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTK-CNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             +++L+VDD     RI++ +LR   +  T+  +    AL ML+  K  +D V++D +MP M
Sbjct:     5 MKILIVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPMLQ--KGDFDFVVTDWNMPGM 62

Query:    77 DGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR---IKE-LRNI 129
              G  L + +  +     LPV+M++ +   + ++     G   Y++KP     +KE L  I
Sbjct:    63 QGIDLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVKPFTAATLKEKLDKI 122

Query:   130 WQHVA 134
             ++ +A
Sbjct:   123 FERLA 127


>TAIR|locus:2097870 [details] [associations]
            symbol:RR5 "response regulator 5" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS;IMP] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
            stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
            pathway" evidence=RCA;IMP;TAS] [GO:0010114 "response to red light"
            evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA;IMP]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006612 "protein targeting to membrane"
            evidence=RCA] [GO:0009963 "positive regulation of flavonoid
            biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
            plant-type hypersensitive response" evidence=RCA]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0005739 GO:GO:0005634 GO:GO:0005737 GO:GO:0009536
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623
            GO:GO:0006351 GO:GO:0010114 GO:GO:0009736 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AL049658
            HOGENOM:HOG000034820 KO:K14492 EMBL:AB008488 EMBL:AB010916
            EMBL:AF057281 EMBL:AY072390 EMBL:AY114698 IPI:IPI00516847
            PIR:T06673 PIR:T50855 PIR:T50856 RefSeq:NP_190393.1
            UniGene:At.24915 ProteinModelPortal:Q9SB04 SMR:Q9SB04 IntAct:Q9SB04
            STRING:Q9SB04 EnsemblPlants:AT3G48100.1 GeneID:823965
            KEGG:ath:AT3G48100 GeneFarm:4122 TAIR:At3g48100 InParanoid:Q9SB04
            OMA:LEANDIY PhylomeDB:Q9SB04 ProtClustDB:CLSN2684027
            Genevestigator:Q9SB04 GermOnline:AT3G48100 Uniprot:Q9SB04
        Length = 184

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 34/128 (26%), Positives = 70/128 (54%)

Query:    15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRM-----SKNGYD---- 65
             P  L VL VDD  +  + +E++LR    +VT  + A  AL  L +     S  G++    
Sbjct:    22 PKLLHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFEDLKI 81

Query:    66 -IVISDVHMPDMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
              ++++D  MP M G++L +++       ++PV++MS +     + + +  GA ++LLKP+
Sbjct:    82 NLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKPV 141

Query:   122 RIKELRNI 129
             ++ +++ +
Sbjct:   142 KLADVKRL 149


>TIGR_CMR|BA_0994 [details] [associations]
            symbol:BA_0994 "response regulator" species:198094
            "Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
            SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
            GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0008152 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF81606 HSSP:Q9A5I4
            OMA:ERKWGDL RefSeq:NP_843495.1 RefSeq:YP_017622.1
            RefSeq:YP_027204.1 ProteinModelPortal:Q81U90 DNASU:1088940
            EnsemblBacteria:EBBACT00000010036 EnsemblBacteria:EBBACT00000013718
            EnsemblBacteria:EBBACT00000020226 GeneID:1088940 GeneID:2814732
            GeneID:2850195 KEGG:ban:BA_0994 KEGG:bar:GBAA_0994 KEGG:bat:BAS0930
            HOGENOM:HOG000084736 ProtClustDB:CLSK916048
            BioCyc:BANT260799:GJAJ-1008-MONOMER
            BioCyc:BANT261594:GJ7F-1053-MONOMER Uniprot:Q81U90
        Length = 380

 Score = 132 (51.5 bits), Expect = 4.6e-08, P = 4.6e-08
 Identities = 30/118 (25%), Positives = 66/118 (55%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYE-VTKCNRAEIALDMLRMSK-----NGYDIVISDV 71
             + +L+VDD+P+ + +++K+L++  Y+ +   N A+   + +   K     N  D+++ D+
Sbjct:     1 MSILIVDDNPVNIFVIKKILKQAGYQDLVSLNSAQELFEYIHFGKDSSRHNEIDLILLDI 60

Query:    72 HMPDMDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
              MP++DG ++  ++  E    D+P+I ++       + + +  GA +Y+ KPI   EL
Sbjct:    61 MMPEIDGLEVCRRLQKEEKFKDIPIIFVTALEDANKLAEALDIGAMDYITKPINKVEL 118


>TIGR_CMR|BA_0996 [details] [associations]
            symbol:BA_0996 "sensor histidine kinase/response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000155
            "phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR003018 InterPro:IPR001789 InterPro:IPR003594
            InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
            InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
            Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344 PROSITE:PS50110
            PROSITE:PS50885 SMART:SM00065 SMART:SM00304 SMART:SM00387
            SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
            GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0005622
            GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
            SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 KO:K03407
            HSSP:P52934 RefSeq:NP_843497.1 RefSeq:YP_017624.1
            RefSeq:YP_027206.1 ProteinModelPortal:Q81U88 DNASU:1088076
            EnsemblBacteria:EBBACT00000011936 EnsemblBacteria:EBBACT00000016656
            EnsemblBacteria:EBBACT00000023286 GeneID:1088076 GeneID:2814798
            GeneID:2849014 KEGG:ban:BA_0996 KEGG:bar:GBAA_0996 KEGG:bat:BAS0932
            HOGENOM:HOG000084747 OMA:TNNVFQE ProtClustDB:CLSK916050
            BioCyc:BANT260799:GJAJ-1010-MONOMER
            BioCyc:BANT261594:GJ7F-1055-MONOMER InterPro:IPR007891 Pfam:PF05227
            Uniprot:Q81U88
        Length = 896

 Score = 137 (53.3 bits), Expect = 4.8e-08, P = 4.8e-08
 Identities = 28/113 (24%), Positives = 63/113 (55%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +++VDDD   +  L+  L+K    +         L++L+ + N  D+++ D+ MP+MDG+
Sbjct:   778 IMIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTN-IDLILMDIMMPNMDGY 836

Query:    80 KLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
             +  E + + +   ++P+I ++      D  K ++ GA +Y+ KP+ + +L ++
Sbjct:   837 ETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSV 889


>TIGR_CMR|ECH_0773 [details] [associations]
            symbol:ECH_0773 "putative response regulator/diguanylate
            cyclase" species:205920 "Ehrlichia chaffeensis str. Arkansas"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] [GO:0004871 "signal transducer activity"
            evidence=ISS] [GO:0007165 "signal transduction" evidence=ISS]
            InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
            SMART:SM00448 Pfam:PF00990 GO:GO:0006355 EMBL:CP000236
            GenomeReviews:CP000236_GR GO:GO:0005622 SUPFAM:SSF55073
            GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
            TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG3706 KO:K02488 HOGENOM:HOG000167204
            ProtClustDB:PRK09581 RefSeq:YP_507571.1 ProteinModelPortal:Q2GG62
            STRING:Q2GG62 GeneID:3927207 KEGG:ech:ECH_0773 PATRIC:20576976
            OMA:PDICARY BioCyc:ECHA205920:GJNR-776-MONOMER Uniprot:Q2GG62
        Length = 458

 Score = 133 (51.9 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 30/108 (27%), Positives = 66/108 (61%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY-DIVISDVHMPDMD 77
             +VL+VDD P  +++L+  L    Y V         +D +++++  + DI++ DV MP+MD
Sbjct:     4 KVLIVDDLPANIKLLQAKLMSEYYNVLTATNG---MDAIKIAEEKHPDIILLDVMMPEMD 60

Query:    78 GFKLHEQVGLEMD---LPVIMMS-VDGCTQDVMKGVTHGACNYLLKPI 121
             G++  +++    +   +P++M++ +D  + + + G+++GA ++L KPI
Sbjct:    61 GYETCKRLKSNPETTYIPIVMVTALDNTSDNRVSGLSYGADDFLTKPI 108


>TIGR_CMR|GSU_0776 [details] [associations]
            symbol:GSU_0776 "sigma-54 dependent DNA-binding response
            regulator" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
            InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
            Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
            SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
            Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
            InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
            PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
            RefSeq:NP_951833.1 ProteinModelPortal:Q74F33 GeneID:2685232
            KEGG:gsu:GSU0776 PATRIC:22024313 OMA:KELPIWR ProtClustDB:CLSK828021
            BioCyc:GSUL243231:GH27-778-MONOMER Uniprot:Q74F33
        Length = 465

 Score = 133 (51.9 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 33/104 (31%), Positives = 55/104 (52%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG-YDIVISDVHMPDMD 77
             ++L+ DD+    R L+KM +   +EV         L  +    +G  DI++ DV MPDMD
Sbjct:     5 KILICDDEEGIRRYLQKMFQAKEFEVETFADGTSLLARIEAGTDGDADILLQDVRMPDMD 64

Query:    78 GFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
             G ++ ++V  L   LPV++M+  G     +  +  GA +Y+ KP
Sbjct:    65 GIEVLKRVKKLRPSLPVVVMTAFGTIDSAVDAIKLGAYDYVTKP 108


>UNIPROTKB|Q9KNI9 [details] [associations]
            symbol:VC_2749 "Nitrogen regulation protein NR(I)"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] [GO:0006808 "regulation of nitrogen utilization"
            evidence=ISS] [GO:0035556 "intracellular signal transduction"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            InterPro:IPR010114 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
            PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
            SMART:SM00448 GO:GO:0005524 GO:GO:0009399 GO:GO:0003677
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351
            GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006808
            InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
            PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
            OMA:ARGQSNL GO:GO:0050906 TIGRFAMs:TIGR01818 HSSP:P41789 PIR:D82038
            RefSeq:NP_232375.1 ProteinModelPortal:Q9KNI9 SMR:Q9KNI9
            DNASU:2614912 GeneID:2614912 KEGG:vch:VC2749 PATRIC:20084518
            ProtClustDB:CLSK874911 Uniprot:Q9KNI9
        Length = 468

 Score = 133 (51.9 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 41/134 (30%), Positives = 60/134 (44%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             V VVDDD     ++EK L     +      AE  L  L + +   D+++SD+ MP MDG 
Sbjct:     8 VWVVDDDSSIRWVMEKTLSSAHIKCETFADAESVL--LALERETPDVLVSDIRMPGMDGI 65

Query:    80 KLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ----HVA 134
              L  QV     +LPVI+M+        +     GA  YL KP  + E   + +    H  
Sbjct:    66 ALLNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDETLTLVERAIAHGQ 125

Query:   135 QQPKPFEESDDSYS 148
             +Q K      ++YS
Sbjct:   126 EQRKTSHRPSENYS 139


>TIGR_CMR|VC_2749 [details] [associations]
            symbol:VC_2749 "nitrogen regulation protein NR(I)"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
            InterPro:IPR003593 InterPro:IPR009057 InterPro:IPR010114
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0009399 GO:GO:0003677 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
            Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006808 InterPro:IPR025662
            InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00675
            PROSITE:PS00676 PROSITE:PS00688 KO:K07712 OMA:ARGQSNL GO:GO:0050906
            TIGRFAMs:TIGR01818 HSSP:P41789 PIR:D82038 RefSeq:NP_232375.1
            ProteinModelPortal:Q9KNI9 SMR:Q9KNI9 DNASU:2614912 GeneID:2614912
            KEGG:vch:VC2749 PATRIC:20084518 ProtClustDB:CLSK874911
            Uniprot:Q9KNI9
        Length = 468

 Score = 133 (51.9 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 41/134 (30%), Positives = 60/134 (44%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             V VVDDD     ++EK L     +      AE  L  L + +   D+++SD+ MP MDG 
Sbjct:     8 VWVVDDDSSIRWVMEKTLSSAHIKCETFADAESVL--LALERETPDVLVSDIRMPGMDGI 65

Query:    80 KLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ----HVA 134
              L  QV     +LPVI+M+        +     GA  YL KP  + E   + +    H  
Sbjct:    66 ALLNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDETLTLVERAIAHGQ 125

Query:   135 QQPKPFEESDDSYS 148
             +Q K      ++YS
Sbjct:   126 EQRKTSHRPSENYS 139


>TIGR_CMR|GSU_0598 [details] [associations]
            symbol:GSU_0598 "sigma-54 dependent DNA-binding response
            regulator" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
            PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
            GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
            InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
            PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
            RefSeq:NP_951656.1 ProteinModelPortal:Q74FK9 GeneID:2688651
            KEGG:gsu:GSU0598 PATRIC:22023947 OMA:SGMEVLK ProtClustDB:CLSK827940
            BioCyc:GSUL243231:GH27-583-MONOMER Uniprot:Q74FK9
        Length = 470

 Score = 133 (51.9 bits), Expect = 5.2e-08, P = 5.2e-08
 Identities = 33/102 (32%), Positives = 58/102 (56%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             VLVVDD+ I    L ++L K  Y V      +IAL+  R+    Y +VI+D+ MP M G 
Sbjct:     6 VLVVDDEAIIREGLRRILEKEGYHVETSASGQIALE--RLQDENYGLVITDLKMPGMSGM 63

Query:    80 KLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
             ++ + +  L+ ++PVI+++        ++ + +GA +Y+ KP
Sbjct:    64 EVLKAIKVLQPEVPVIIITGFSTVDTAVEAMKNGAFDYIAKP 105


>TIGR_CMR|CBU_2006 [details] [associations]
            symbol:CBU_2006 "DNA-binding response regulator"
            species:227377 "Coxiella burnetii RSA 493" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
            GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 KO:K02483
            RefSeq:NP_820981.1 ProteinModelPortal:Q83AA0 PRIDE:Q83AA0
            GeneID:1209919 KEGG:cbu:CBU_2006 PATRIC:17932757 OMA:AKNGSEM
            ProtClustDB:CLSK915183 BioCyc:CBUR227377:GJ7S-1980-MONOMER
            Uniprot:Q83AA0
        Length = 245

 Score = 127 (49.8 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 35/108 (32%), Positives = 57/108 (52%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKC-NRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             +L+VDDD     +L K LR+  +E +   + +E+   +L   K   D+VI D+ MP  DG
Sbjct:     7 ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILL---KQAVDLVILDIMMPGDDG 63

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
               L  Q+     +P++M++      D + G+  GA +YL KP   +EL
Sbjct:    64 LTLCRQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPREL 111


>TIGR_CMR|BA_4920 [details] [associations]
            symbol:BA_4920 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
            GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
            SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_847118.1 RefSeq:YP_021563.2
            ProteinModelPortal:Q81KS0 DNASU:1084104
            EnsemblBacteria:EBBACT00000011298 EnsemblBacteria:EBBACT00000014550
            GeneID:1084104 GeneID:2819868 KEGG:ban:BA_4920 KEGG:bar:GBAA_4920
            PATRIC:18787418 OMA:FFVTHPN ProtClustDB:CLSK882384
            BioCyc:BANT261594:GJ7F-4779-MONOMER Uniprot:Q81KS0
        Length = 229

 Score = 126 (49.4 bits), Expect = 5.7e-08, P = 5.7e-08
 Identities = 30/118 (25%), Positives = 63/118 (53%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             R+L+++D+     +    L    ++V   +  E  L M    +  YD++I D+ +P M+G
Sbjct:     3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMAL--QEDYDLIILDIMLPKMNG 60

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL-RNIWQHVAQ 135
             F++ +Q+    D+P++++S      D ++G+  GA +Y+ KP    EL   +  H+++
Sbjct:    61 FEICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118


>TIGR_CMR|GSU_1285 [details] [associations]
            symbol:GSU_1285 "sensory box sensor histidine
            kinase/response regulator" species:243231 "Geobacter sulfurreducens
            PCA" [GO:0000155 "phosphorelay sensor kinase activity"
            evidence=ISS] [GO:0000156 "phosphorelay response regulator
            activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR000014
            InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
            InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
            Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
            PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091 SMART:SM00387
            SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
            GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
            GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
            SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
            Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
            SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 RefSeq:NP_952338.1
            PDB:2R78 PDBsum:2R78 ProteinModelPortal:Q74DN1 SMR:Q74DN1
            GeneID:2688111 KEGG:gsu:GSU1285 PATRIC:22025341
            HOGENOM:HOG000144300 OMA:AHTNSER
            BioCyc:GSUL243231:GH27-1253-MONOMER EvolutionaryTrace:Q74DN1
            Uniprot:Q74DN1
        Length = 772

 Score = 135 (52.6 bits), Expect = 6.4e-08, P = 6.4e-08
 Identities = 43/145 (29%), Positives = 71/145 (48%)

Query:     3 PASSSVAVSDQFPA--GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS 60
             P ++  AV+++  A   L VL+VDD  +  +++  +L    + VT       AL  +   
Sbjct:   529 PPATGWAVAEKSVAVRPLSVLLVDDSAVSRKVVSLLLESDGHRVTFAGDGVEALAAI--G 586

Query:    61 KNGYDIVISDVHMPDMDGFKLHEQV--GLEMD---LPVIMMSVDGCTQDVMKGVTHGACN 115
             +  +D+V+ DV MP MDGF+    +  G       LP+I ++      D    +  GA +
Sbjct:   587 REAFDLVLMDVQMPVMDGFEAMRAIRAGEAAGGARLPIIALTARALAGDRELCLEAGADD 646

Query:   116 YLLKPIRIKELRN-IWQHVAQQPKP 139
             YL KP+   ELR  I +H  ++ KP
Sbjct:   647 YLAKPVNFSELRRVISRHCCRESKP 671


>UNIPROTKB|Q48GE0 [details] [associations]
            symbol:fleR "Sigma-54 dependent DNA-binding response
            regulator FleR" species:264730 "Pseudomonas syringae pv.
            phaseolicola 1448A" [GO:0007155 "cell adhesion" evidence=ISS]
            [GO:0030092 "regulation of flagellum assembly" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
            InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
            Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
            SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
            GO:GO:0003677 GO:GO:0007155 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
            GenomeReviews:CP000058_GR eggNOG:COG2204 HOGENOM:HOG000058489
            InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
            PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0030092
            KO:K10943 RefSeq:YP_275543.1 ProteinModelPortal:Q48GE0
            STRING:Q48GE0 GeneID:3555577 KEGG:psp:PSPPH_3385 PATRIC:19976178
            OMA:FQMIIDT ProtClustDB:CLSK866333 Uniprot:Q48GE0
        Length = 471

 Score = 132 (51.5 bits), Expect = 6.6e-08, P = 6.6e-08
 Identities = 39/126 (30%), Positives = 60/126 (47%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             + VL+V+DD      L + L    Y       AE AL  +      + +VISDV+MP MD
Sbjct:     3 INVLLVEDDRSLREALGETLELAGYGYQAVGSAEEAL--VAAEAQPFSLVISDVNMPGMD 60

Query:    78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL-RNIWQHVAQ 135
             G +L   +      LPV++M+  G     +  +  GA +YL+KP   K L   + +H   
Sbjct:    61 GHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIALVARHALG 120

Query:   136 QPKPFE 141
             + +P E
Sbjct:   121 RLEPAE 126


>UNIPROTKB|P69228 [details] [associations]
            symbol:baeR "BaeR-Phosphorylated DNA-binding
            transcriptional activator" species:83333 "Escherichia coli K-12"
            [GO:0005622 "intracellular" evidence=IEA] [GO:0000156 "phosphorelay
            response regulator activity" evidence=IEA] [GO:0035556
            "intracellular signal transduction" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0000160 "phosphorelay
            signal transduction system" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA;IEP;IDA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:2001023 "regulation of response to
            drug" evidence=IMP] [GO:2000144 "positive regulation of
            DNA-dependent transcription, initiation" evidence=IDA] [GO:0000986
            "bacterial-type RNA polymerase core promoter proximal region
            sequence-specific DNA binding" evidence=IDA] InterPro:IPR001789
            InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
            GO:GO:0006355 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            HOGENOM:HOG000034819 SUPFAM:SSF46894 EMBL:D14054 PIR:JX0283
            RefSeq:NP_416583.1 RefSeq:YP_490321.1 ProteinModelPortal:P69228
            SMR:P69228 IntAct:P69228 PRIDE:P69228
            EnsemblBacteria:EBESCT00000000767 EnsemblBacteria:EBESCT00000014834
            GeneID:12931433 GeneID:946605 KEGG:ecj:Y75_p2042 KEGG:eco:b2079
            PATRIC:32119491 EchoBASE:EB1575 EcoGene:EG11618 KO:K07664
            OMA:EADACRM ProtClustDB:PRK10710 BioCyc:EcoCyc:BAER-MONOMER
            BioCyc:ECOL316407:JW2064-MONOMER Genevestigator:P69228
            Uniprot:P69228
        Length = 240

 Score = 126 (49.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 36/144 (25%), Positives = 74/144 (51%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             R+L+V+D+P   ++L   LR   Y  T  +  +  L  +R +    D+++ D+ +P  DG
Sbjct:    12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPP--DLILLDLMLPGTDG 69

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
               L  ++    D+P++M++      D + G+  GA +Y+ KP   +E+    + + ++ K
Sbjct:    70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129

Query:   139 PFEE--SDDSYS---VNQGNWRTS 157
             P  E    D+ S   +++G ++ S
Sbjct:   130 PQRELQQQDAESPLIIDEGRFQAS 153


>UNIPROTKB|P71403 [details] [associations]
            symbol:cheY "Chemotaxis protein CheY homolog" species:85962
            "Helicobacter pylori 26695" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
            SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
            GO:GO:0046872 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AE000511
            GenomeReviews:AE000511_GR GO:GO:0001539 KO:K03413 EMBL:X81897
            EMBL:U97567 EMBL:AF021090 PIR:C64653 RefSeq:NP_207858.1
            RefSeq:YP_006934983.1 PDB:3GWG PDB:3H1E PDB:3H1F PDB:3H1G
            PDBsum:3GWG PDBsum:3H1E PDBsum:3H1F PDBsum:3H1G
            ProteinModelPortal:P71403 DIP:DIP-3256N MINT:MINT-160671
            GeneID:13870261 GeneID:899603 KEGG:heo:C694_05515 KEGG:hpy:HP1067
            PATRIC:20593473 OMA:DVLITDW ProtClustDB:CLSK872349
            EvolutionaryTrace:P71403 Uniprot:P71403
        Length = 124

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 32/114 (28%), Positives = 64/114 (56%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             +++LVVDD     RI++  L +  YE V +      A + L  + +   ++I+D +MP+M
Sbjct:     1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITDWNMPEM 59

Query:    77 DGFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
             +G  L ++V  +    ++P+IM++ +G   +V+  +  G  NY++KP   + L+
Sbjct:    60 NGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 113


>TIGR_CMR|CHY_1018 [details] [associations]
            symbol:CHY_1018 "chemotaxis response regulator"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
            GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
            RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
            STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
            BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
        Length = 121

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 32/106 (30%), Positives = 58/106 (54%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             RVL+VDD      +++ +L K  YEV  +      A++M +  K   D+V  D+ MP+MD
Sbjct:     4 RVLIVDDAAFMRMMIKNILVKNGYEVVGEAENGAQAVEMYKELKP--DVVTMDITMPEMD 61

Query:    78 GFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
             G +   ++  ++ +  +IM S  G    VM+ +  GA ++++KP +
Sbjct:    62 GIQAVREIKKIDPNAKIIMCSAMGQQALVMEAIQAGAIDFIVKPFQ 107


>TIGR_CMR|GSU_1891 [details] [associations]
            symbol:GSU_1891 "response regulator" species:243231
            "Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789
            InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
            PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
            GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
            Gene3D:1.10.3210.10 HOGENOM:HOG000266481 HSSP:P06143
            RefSeq:NP_952940.1 ProteinModelPortal:Q74BY7 GeneID:2688472
            KEGG:gsu:GSU1891 PATRIC:22026647 OMA:FATIRTH ProtClustDB:CLSK924546
            BioCyc:GSUL243231:GH27-1919-MONOMER Uniprot:Q74BY7
        Length = 379

 Score = 130 (50.8 bits), Expect = 7.5e-08, P = 7.5e-08
 Identities = 33/102 (32%), Positives = 56/102 (54%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             ++V+DDDP  L  L  +L    Y V    R   A+   R+S  G DIVI+D++MP+M G 
Sbjct:     9 IVVIDDDPYVLESLSALLVAYGYIVHPFGRGADAVH--RLSCGGIDIVITDINMPEMTGI 66

Query:    80 KLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
             ++   +     D+PVI+M+        ++ +  GA ++++KP
Sbjct:    67 EVLRAIRKSNPDVPVILMTGYAELSVAVEAIKQGAFDFIIKP 108


>TIGR_CMR|GSU_1265 [details] [associations]
            symbol:GSU_1265 "sensor histidine kinase/response
            regulator" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
            InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
            Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
            PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
            InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
            GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
            GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
            SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
            HOGENOM:HOG000217841 RefSeq:NP_952318.1 ProteinModelPortal:Q74DQ0
            GeneID:2685795 KEGG:gsu:GSU1265 PATRIC:22025301 OMA:SHITHEF
            ProtClustDB:CLSK743116 BioCyc:GSUL243231:GH27-1218-MONOMER
            Uniprot:Q74DQ0
        Length = 445

 Score = 131 (51.2 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 44/142 (30%), Positives = 72/142 (50%)

Query:     2 SPASSSVAVSDQFPAGLRVLVVDD-DPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS 60
             +PA      S+   A LRVLV +D + I L ++   LR   ++V      + ALDM  M+
Sbjct:   308 APADGQEKESESV-APLRVLVAEDAEDIRL-LIAAFLRGASHQVCSAGNGQEALDMF-MA 364

Query:    61 KNGYDIVISDVHMPDMDGFK----LHEQVGLEMDLPVIMMSVDGCTQ--DVMKGVTHGAC 114
             ++ +D+V+ D+ MP MDG+     L E        PV ++++  C +  D +K +  G  
Sbjct:   365 ED-FDLVLMDIQMPVMDGYTATRALREWERQRGRTPVPVVALTACAEKSDSLKTIEAGCT 423

Query:   115 NYLLKPIRIKELRNIWQHVAQQ 136
             ++L KPIR   L      +A+Q
Sbjct:   424 SHLSKPIRKDTLLRTVAELARQ 445


>UNIPROTKB|P0AE88 [details] [associations]
            symbol:cpxR "CpxR transcriptional dual regulator"
            species:83333 "Escherichia coli K-12" [GO:0000156 "phosphorelay
            response regulator activity" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0035556 "intracellular signal
            transduction" evidence=IEA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=ISS;IDA] [GO:0045893
            "positive regulation of transcription, DNA-dependent"
            evidence=ISS;IDA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS;IDA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0045892
            GO:GO:0045893 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:L19201
            eggNOG:COG0745 HOGENOM:HOG000034819 EMBL:M36795 EMBL:X13307
            EMBL:L14579 PIR:C65197 RefSeq:NP_418348.1 RefSeq:YP_491538.1
            ProteinModelPortal:P0AE88 SMR:P0AE88 DIP:DIP-47991N IntAct:P0AE88
            MINT:MINT-1292432 PaxDb:P0AE88 EnsemblBacteria:EBESCT00000002313
            EnsemblBacteria:EBESCT00000017066 GeneID:12933651 GeneID:948404
            KEGG:ecj:Y75_p3274 KEGG:eco:b3912 PATRIC:32123337 EchoBASE:EB0019
            EcoGene:EG10020 KO:K07662 OMA:YQTPVIM ProtClustDB:PRK10955
            BioCyc:EcoCyc:CPXR-MONOMER BioCyc:ECOL316407:JW3883-MONOMER
            Genevestigator:P0AE88 Uniprot:P0AE88
        Length = 232

 Score = 125 (49.1 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 34/108 (31%), Positives = 57/108 (52%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++L+VDDD     +L+++L    + V   +  E ALD+L    +  D+++ DV MP  +G
Sbjct:     3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL---DDSIDLLLLDVMMPKKNG 59

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
                 + +      PVIM++  G   D + G+  GA +YL KP   +EL
Sbjct:    60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDREL 107


>TIGR_CMR|SO_3594 [details] [associations]
            symbol:SO_3594 "transcriptional regulatory protein RstA,
            putative" species:211586 "Shewanella oneidensis MR-1" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
            GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
            KO:K02483 RefSeq:NP_719137.1 ProteinModelPortal:Q8EBD1
            GeneID:1171260 KEGG:son:SO_3594 PATRIC:23526884 OMA:QYLLNID
            ProtClustDB:CLSK907248 Uniprot:Q8EBD1
        Length = 237

 Score = 125 (49.1 bits), Expect = 8.4e-08, P = 8.4e-08
 Identities = 35/124 (28%), Positives = 64/124 (51%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             RVL+V+DD     ++   L+     V    R +  L  L   K   DI++ D+ +P +DG
Sbjct:     9 RVLLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKP--DIILLDIMLPGIDG 66

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR----IKELRNIWQHVA 134
               L E++      P+++MS  G ++D +KG+  GA +Y++KP+     +  + N+ +   
Sbjct:    67 LSLCEKLPDYFAGPILLMSALGSSEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQN 126

Query:   135 QQPK 138
             Q P+
Sbjct:   127 QPPQ 130


>UNIPROTKB|Q9KKK8 [details] [associations]
            symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
            "Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
            transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
            evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
            SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
            GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
            KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
            ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
            KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
            Uniprot:Q9KKK8
        Length = 125

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 34/118 (28%), Positives = 58/118 (49%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             +VL VDD     +++   L+   YEV        AL   +  K  +D++ISDV+MP M G
Sbjct:     9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREAL--AKAQKARFDVIISDVNMPVMTG 66

Query:    79 FKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
             F+  + V ++      P++M++ +   +   +G   GA  +L+KP   + L    Q V
Sbjct:    67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRV 124


>TIGR_CMR|VC_A1096 [details] [associations]
            symbol:VC_A1096 "chemotaxis protein CheY" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
            activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
            GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
            HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
            DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
            ProtClustDB:CLSK789264 Uniprot:Q9KKK8
        Length = 125

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 34/118 (28%), Positives = 58/118 (49%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             +VL VDD     +++   L+   YEV        AL   +  K  +D++ISDV+MP M G
Sbjct:     9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREAL--AKAQKARFDVIISDVNMPVMTG 66

Query:    79 FKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
             F+  + V ++      P++M++ +   +   +G   GA  +L+KP   + L    Q V
Sbjct:    67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRV 124


>UNIPROTKB|Q9KMT1 [details] [associations]
            symbol:VCA0239 "Transcriptional regulator" species:243277
            "Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
            GenomeReviews:AE003853_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HSSP:P08402 EMBL:AE004364 PIR:E82483
            RefSeq:NP_232637.1 ProteinModelPortal:Q9KMT1 DNASU:2612437
            GeneID:2612437 KEGG:vch:VCA0239 PATRIC:20085039
            ProtClustDB:CLSK788728 Uniprot:Q9KMT1
        Length = 224

 Score = 124 (48.7 bits), Expect = 8.8e-08, P = 8.8e-08
 Identities = 29/110 (26%), Positives = 63/110 (57%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +R+L+++DD    R +E+ L+   +++ +    +  L+ ++ S+   D++I D  +P +D
Sbjct:     1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEP--DLLILDRMLPHVD 58

Query:    78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G  L +Q+      + ++M+S  G  ++ ++G+  GA +YL KP   +EL
Sbjct:    59 GLTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEEL 108


>TIGR_CMR|CJE_1362 [details] [associations]
            symbol:CJE_1362 "DNA-binding response regulator"
            species:195099 "Campylobacter jejuni RM1221" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
            GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0005622 EMBL:CP000025 GenomeReviews:CP000025_GR
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 PIR:E81329
            RefSeq:YP_179349.1 ProteinModelPortal:Q5HTN6 STRING:Q5HTN6
            GeneID:3231868 KEGG:cjr:CJE1362 PATRIC:20044524 OMA:SARHDIS
            ProtClustDB:CLSK879152 BioCyc:CJEJ195099:GJC0-1389-MONOMER
            Uniprot:Q5HTN6
        Length = 224

 Score = 124 (48.7 bits), Expect = 8.8e-08, P = 8.8e-08
 Identities = 33/115 (28%), Positives = 59/115 (51%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L+++DD     I  + L K   +V   +   I L  L + +  Y ++I D+ +P +DG 
Sbjct:     4 ILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALKE--YQLIILDLSLPGLDGL 61

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR-NIWQHV 133
             ++ E++  + D P+I+ S      D +  +  GA +YL KP   KEL+  I  H+
Sbjct:    62 EVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKPYNPKELQARIKSHL 116


>TIGR_CMR|VC_A0239 [details] [associations]
            symbol:VC_A0239 "transcriptional regulator" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
            Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
            GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005622 GenomeReviews:AE003853_GR
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402
            EMBL:AE004364 PIR:E82483 RefSeq:NP_232637.1
            ProteinModelPortal:Q9KMT1 DNASU:2612437 GeneID:2612437
            KEGG:vch:VCA0239 PATRIC:20085039 ProtClustDB:CLSK788728
            Uniprot:Q9KMT1
        Length = 224

 Score = 124 (48.7 bits), Expect = 8.8e-08, P = 8.8e-08
 Identities = 29/110 (26%), Positives = 63/110 (57%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +R+L+++DD    R +E+ L+   +++ +    +  L+ ++ S+   D++I D  +P +D
Sbjct:     1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEP--DLLILDRMLPHVD 58

Query:    78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G  L +Q+      + ++M+S  G  ++ ++G+  GA +YL KP   +EL
Sbjct:    59 GLTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEEL 108


>TIGR_CMR|CPS_2473 [details] [associations]
            symbol:CPS_2473 "DNA-binding response regulator"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
            EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            HOGENOM:HOG000034819 RefSeq:YP_269189.1 ProteinModelPortal:Q481T0
            STRING:Q481T0 GeneID:3519581 KEGG:cps:CPS_2473 PATRIC:21468015
            ProtClustDB:CLSK869033 BioCyc:CPSY167879:GI48-2536-MONOMER
            Uniprot:Q481T0
        Length = 242

 Score = 125 (49.1 bits), Expect = 9.0e-08, P = 9.0e-08
 Identities = 33/133 (24%), Positives = 66/133 (49%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++L+VDDD +  ++L        Y+V+    AE A ++L +     D+++ D+ MP  DG
Sbjct:     6 KILIVDDDELTRQVLSSYFENEGYDVSCATTAEEAEELLILGT--VDLILLDIRMPGKDG 63

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
               L  ++ +  ++ +I+++      D + G+  GA  Y+ KP   +E+    +N+ + V 
Sbjct:    64 LTLTRELRVNNEVGIILVTGSQDEVDRLIGLECGADEYVTKPFNPREILARAKNLIRRVR 123

Query:   135 QQPKPFEESDDSY 147
                K     +D Y
Sbjct:   124 LCQKVKSADNDDY 136


>TIGR_CMR|GSU_0280 [details] [associations]
            symbol:GSU_0280 "transcriptional regulator, Fis family"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
            binding" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
            RefSeq:NP_951341.1 ProteinModelPortal:Q74GG5 GeneID:2687472
            KEGG:gsu:GSU0280 PATRIC:22023302 OMA:ISTFETR
            BioCyc:GSUL243231:GH27-330-MONOMER Uniprot:Q74GG5
        Length = 450

 Score = 130 (50.8 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 35/111 (31%), Positives = 61/111 (54%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             +L V+D+P+    +   LR     V + C+  E A+ M+R      D+V+SD+ MP MDG
Sbjct:     9 ILYVEDEPVLREQVVFALRMHFSRVLSACDGKE-AMRMIRAECP--DVVVSDIRMPAMDG 65

Query:    79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
               L   +  E+ DLPV++ +    T  ++K +  G   Y+ KPI +++L++
Sbjct:    66 LTLASLLKTELPDLPVVLCTALHETDHLLKAIELGVAAYVSKPIDLEKLQH 116


>UNIPROTKB|Q9A5I5 [details] [associations]
            symbol:pleD "Response regulator PleD" species:190650
            "Caulobacter crescentus CB15" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0005525
            GO:GO:0005737 GO:GO:0030154 GO:GO:0006355 GO:GO:0046872
            GO:GO:0007049 SUPFAM:SSF55073 UniPathway:UPA00599 GO:GO:0052621
            GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
            TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG3706 EMBL:AE005673
            GenomeReviews:AE005673_GR KO:K02488 EMBL:L42554 PIR:E87554
            RefSeq:NP_421265.1 ProteinModelPortal:Q9A5I5 SMR:Q9A5I5
            DIP:DIP-29503N IntAct:Q9A5I5 GeneID:943650 KEGG:ccr:CC_2462
            PATRIC:21301956 HOGENOM:HOG000167204 OMA:LAICERN
            ProtClustDB:PRK09581 Uniprot:Q9A5I5
        Length = 454

 Score = 130 (50.8 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 38/107 (35%), Positives = 62/107 (57%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             R+LVVDD    +R+LE  L    YEV+       AL M   +++  DI++ DV MP MDG
Sbjct:     4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMA--ARDLPDIILLDVMMPGMDG 61

Query:    79 FKLHEQVGLE---MDLPVIMMS-VDGCTQDVMKGVTHGACNYLLKPI 121
             F +  ++  +     +PV++++ +DG   D ++G+  GA ++L KPI
Sbjct:    62 FTVCRKLKDDPTTRHIPVVLITALDG-RGDRIQGLESGASDFLTKPI 107


>TIGR_CMR|GSU_2915 [details] [associations]
            symbol:GSU_2915 "sigma-54 dependent DNA-binding response
            regulator" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
            InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
            PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 RefSeq:NP_953957.1
            ProteinModelPortal:Q748T6 GeneID:2688534 KEGG:gsu:GSU2915
            PATRIC:22028689 OMA:AFRYRMK ProtClustDB:CLSK829000
            BioCyc:GSUL243231:GH27-2910-MONOMER Uniprot:Q748T6
        Length = 457

 Score = 130 (50.8 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 31/109 (28%), Positives = 61/109 (55%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++LVVDD+ +    LE+ L+K  Y+V      E AL ++R  +   D+V+ D+ +P + G
Sbjct:     5 KILVVDDEHLIRWSLEQNLKKQGYDVVSAGNGEDALRIVREEQP--DLVLLDIQLPGISG 62

Query:    79 FKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
              +  E++   + ++ VIM++  G  +  +  +  GA +Y+ KP  + E+
Sbjct:    63 LEALEKIKEYDEEILVIMVTAHGALETAVHAMRLGAYDYINKPFNLDEM 111


>UNIPROTKB|P30855 [details] [associations]
            symbol:evgS "EvgS sensory histidine kinase" species:83333
            "Escherichia coli K-12" [GO:0030288 "outer membrane-bounded
            periplasmic space" evidence=IEA] [GO:0006810 "transport"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0005215 "transporter activity"
            evidence=IEA] [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA] [GO:0023014 "signal transduction by
            phosphorylation" evidence=IEA;RCA;IDA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0035556 "intracellular signal
            transduction" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0046777 "protein autophosphorylation"
            evidence=IDA] [GO:0009927 "histidine phosphotransfer kinase
            activity" evidence=IMP] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0016021 "integral to membrane" evidence=IEA;RCA] [GO:0016020
            "membrane" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0000160 "phosphorelay signal transduction system"
            evidence=IEA;IDA] [GO:0000155 "phosphorelay sensor kinase activity"
            evidence=IEA;RCA;IDA] InterPro:IPR001638 InterPro:IPR001789
            InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
            InterPro:IPR008207 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00497
            Pfam:PF00512 Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344
            PROSITE:PS50110 PROSITE:PS50894 SMART:SM00062 SMART:SM00073
            SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
            GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0006355
            GO:GO:0035556 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0005215 GO:GO:0030288
            GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            eggNOG:COG0784 GO:GO:0009927 GO:GO:0000155 Gene3D:1.10.287.130
            Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
            Gene3D:1.20.120.160 SUPFAM:SSF47226 BRENDA:2.7.13.3 EMBL:D14008
            EMBL:AF201840 EMBL:AF201841 PIR:G65010 RefSeq:NP_416871.1
            RefSeq:YP_490612.1 ProteinModelPortal:P30855 SMR:P30855
            DIP:DIP-9545N IntAct:P30855 MINT:MINT-1288120 PRIDE:P30855
            EnsemblBacteria:EBESCT00000000392 EnsemblBacteria:EBESCT00000000393
            EnsemblBacteria:EBESCT00000017143 GeneID:12931565 GeneID:946844
            KEGG:ecj:Y75_p2337 KEGG:eco:b2370 PATRIC:32120119 EchoBASE:EB1567
            EcoGene:EG11610 HOGENOM:HOG000122879 KO:K07679 OMA:SFAEAFI
            ProtClustDB:PRK09959 BioCyc:EcoCyc:EVGS-MONOMER
            BioCyc:ECOL316407:JW2367-MONOMER Genevestigator:P30855
            Uniprot:P30855
        Length = 1197

 Score = 135 (52.6 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 36/122 (29%), Positives = 66/122 (54%)

Query:    15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
             P  L +L+ DD P    +L++ L    Y+V +      AL   ++S   YD++I+DV+MP
Sbjct:   956 PEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALH--KVSMQHYDLLITDVNMP 1013

Query:    75 DMDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
             +MDGF+L  ++  +   LP+  ++ +    +  KG++ G    L KP+ +  L+    H+
Sbjct:  1014 NMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKT---HL 1070

Query:   134 AQ 135
             +Q
Sbjct:  1071 SQ 1072


>TIGR_CMR|GSU_2212 [details] [associations]
            symbol:GSU_2212 "chemotaxis protein CheY" species:243231
            "Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
            activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
            RefSeq:NP_953261.1 ProteinModelPortal:Q74AY7 GeneID:2687085
            KEGG:gsu:GSU2212 PATRIC:22027279 OMA:SSAMRRQ ProtClustDB:CLSK924580
            BioCyc:GSUL243231:GH27-2150-MONOMER Uniprot:Q74AY7
        Length = 128

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 29/124 (23%), Positives = 67/124 (54%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             VL+V+D P   +++   L++ +  ++    ++    + ++S +  D++++D++MP MDG 
Sbjct:     6 VLIVEDSPTMRQLIAFALKR-IPGISIVEASDGVDGLKKLSAHAIDLILTDINMPVMDGL 64

Query:    80 KLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ- 135
             KL   V  +     LP+ +++ +G  +D  + +  GA  Y+ KPI+   + ++ + +   
Sbjct:    65 KLVSLVRSDPSHRHLPIAIITTEGAAEDRERALALGANAYITKPIQAGRVLSVARELLGI 124

Query:   136 QPKP 139
              P P
Sbjct:   125 SPNP 128


>TAIR|locus:2194584 [details] [associations]
            symbol:ARR4 "response regulator 4" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
            "red or far-red light signaling pathway" evidence=IMP] [GO:0009736
            "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
            [GO:0010114 "response to red light" evidence=IMP] [GO:0009793
            "embryo development ending in seed dormancy" evidence=IMP]
            [GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
            "regulation of circadian rhythm" evidence=IGI] [GO:0009735
            "response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
            serine/threonine kinase activity" evidence=IDA] [GO:0046777
            "protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
            targeting to membrane" evidence=RCA] [GO:0009963 "positive
            regulation of flavonoid biosynthetic process" evidence=RCA]
            [GO:0010363 "regulation of plant-type hypersensitive response"
            evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
            SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
            GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
            GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
            GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
            HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
            EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
            PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
            ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
            EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
            GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
            PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
            Uniprot:O82798
        Length = 259

 Score = 125 (49.1 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 38/150 (25%), Positives = 77/150 (51%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG---------YDIVI 68
             + VL VDD  +   ++E++LR    +VT  +    AL+ L +              D++I
Sbjct:    34 VHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDNEKASAEFDRLKVDLII 93

Query:    69 SDVHMPDMDGFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
             +D  MP M G++L +++       ++PV++MS +     + + +  GA ++LLKP+++ +
Sbjct:    94 TDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLKPVKLAD 153

Query:   126 LRNIWQHVAQQPKPFEES-----DDSYSVN 150
             ++ +  H+ +  K    +     +DS SVN
Sbjct:   154 VKRLRSHLTKDVKLSNGNKRKLPEDSSSVN 183


>UNIPROTKB|P0AA16 [details] [associations]
            symbol:ompR species:83333 "Escherichia coli K-12"
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0000160 "phosphorelay signal transduction system"
            evidence=IEA;IDA] [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;IDA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0035556
            "intracellular signal transduction" evidence=IEA;IDA] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
            GO:GO:0045893 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0003677 EMBL:U18997 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 EMBL:J01656
            PIR:H65135 RefSeq:NP_417864.1 RefSeq:YP_492027.1 PDB:1ODD PDB:1OPC
            PDB:2JPB PDBsum:1ODD PDBsum:1OPC PDBsum:2JPB
            ProteinModelPortal:P0AA16 SMR:P0AA16 DIP:DIP-31859N IntAct:P0AA16
            PaxDb:P0AA16 PRIDE:P0AA16 EnsemblBacteria:EBESCT00000000052
            EnsemblBacteria:EBESCT00000000053 EnsemblBacteria:EBESCT00000000054
            EnsemblBacteria:EBESCT00000000055 EnsemblBacteria:EBESCT00000017093
            GeneID:12932273 GeneID:947913 KEGG:ecj:Y75_p3771 KEGG:eco:b3405
            PATRIC:32122246 EchoBASE:EB0666 EcoGene:EG10672 KO:K07659
            OMA:REPMSRD ProtClustDB:PRK09468 BioCyc:EcoCyc:OMPR-MONOMER
            BioCyc:ECOL316407:JW3368-MONOMER EvolutionaryTrace:P0AA16
            Genevestigator:P0AA16 Uniprot:P0AA16
        Length = 239

 Score = 124 (48.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 31/109 (28%), Positives = 62/109 (56%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++LVVDDD     +LE+ L +  ++V     AE  +D L +++  + +++ D+ +P  DG
Sbjct:     6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAE-QMDRL-LTRESFHLMVLDLMLPGEDG 63

Query:    79 FKLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
               +  ++  + + +P+IM++  G   D + G+  GA +Y+ KP   +EL
Sbjct:    64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPREL 112


>TIGR_CMR|GSU_3418 [details] [associations]
            symbol:GSU_3418 "sigma-54 dependent DNA-binding response
            regulator" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025662
            InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00675
            PROSITE:PS00676 PROSITE:PS00688 HOGENOM:HOG000058487
            RefSeq:NP_954458.1 ProteinModelPortal:Q746V0 GeneID:2686607
            KEGG:gsu:GSU3418 PATRIC:22029693 OMA:LSIYSFP
            ProtClustDB:CLSK2522262 BioCyc:GSUL243231:GH27-3392-MONOMER
            Uniprot:Q746V0
        Length = 490

 Score = 130 (50.8 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 32/110 (29%), Positives = 61/110 (55%)

Query:    20 VLVVDDDPIWLRILEKMLRKC--LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +L+VDD+  WLR L   LR+   +  + KC+ +   +D+LR ++    +++ D+ MP   
Sbjct:    11 ILLVDDEAAWLRSLSLTLREATGIDNIIKCSDSRQVMDILRETE--VSLILLDLTMPYFS 68

Query:    78 GFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G  L + +G E  D+PVI++S     +  ++ +  GA +Y +K +  + L
Sbjct:    69 GTDLLQMIGQEYPDIPVIVLSGLNQVETAVRCMQLGAFDYYVKTVEKERL 118


>UNIPROTKB|Q3ADB1 [details] [associations]
            symbol:cheY1 "Chemotaxis protein CheY" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0004871 "signal
            transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
            evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
            SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
            GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
            HOGENOM:HOG000034820 RefSeq:YP_359873.1 ProteinModelPortal:Q3ADB1
            STRING:Q3ADB1 GeneID:3728270 KEGG:chy:CHY_1026 PATRIC:21275187
            OMA:GATAWIT BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
        Length = 120

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 33/121 (27%), Positives = 65/121 (53%)

Query:    19 RVLVVDDDPIWLRILE-KMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             ++L +DD    L+ ++  +LRK  ++V    +   ALDML   K  +D++I+D++MP+MD
Sbjct:     3 KILALDDSATMLQSIKISLLRKG-HQVATFTKGSEALDML--GKEKFDLIITDLNMPEMD 59

Query:    78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
             G    ++V    +    PVI+++ +       +    GA  ++ KP   ++L  + + VA
Sbjct:    60 GITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGVVEKVA 119

Query:   135 Q 135
             +
Sbjct:   120 R 120


>TIGR_CMR|CHY_1026 [details] [associations]
            symbol:CHY_1026 "chemotaxis protein CheY" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
            "chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935
            GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            eggNOG:COG0784 HOGENOM:HOG000034820 RefSeq:YP_359873.1
            ProteinModelPortal:Q3ADB1 STRING:Q3ADB1 GeneID:3728270
            KEGG:chy:CHY_1026 PATRIC:21275187 OMA:GATAWIT
            BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
        Length = 120

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 33/121 (27%), Positives = 65/121 (53%)

Query:    19 RVLVVDDDPIWLRILE-KMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             ++L +DD    L+ ++  +LRK  ++V    +   ALDML   K  +D++I+D++MP+MD
Sbjct:     3 KILALDDSATMLQSIKISLLRKG-HQVATFTKGSEALDML--GKEKFDLIITDLNMPEMD 59

Query:    78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
             G    ++V    +    PVI+++ +       +    GA  ++ KP   ++L  + + VA
Sbjct:    60 GITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGVVEKVA 119

Query:   135 Q 135
             +
Sbjct:   120 R 120


>UNIPROTKB|Q4K714 [details] [associations]
            symbol:PFL_4888 "Sigma-54 dependent DNA-binding response
            regulator" species:220664 "Pseudomonas protegens Pf-5" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0035556
            "intracellular signal transduction" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
            InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
            Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
            SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
            Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
            GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
            HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
            InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
            KO:K02481 RefSeq:YP_261969.1 ProteinModelPortal:Q4K714
            STRING:Q4K714 GeneID:3479299 KEGG:pfl:PFL_4888 PATRIC:19879244
            OMA:CVERATI ProtClustDB:CLSK937927
            BioCyc:PFLU220664:GIX8-4929-MONOMER Uniprot:Q4K714
        Length = 465

 Score = 128 (50.1 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 36/108 (33%), Positives = 57/108 (52%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +LVVDD+P    +L   L +   +V        AL +L   +   D+VISD  MP MDG 
Sbjct:     5 LLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLE--QEDIDLVISDWRMPGMDGP 62

Query:    80 KLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             +L  ++      LPVI+M+     ++ ++ + +GA +Y+ KP  I EL
Sbjct:    63 QLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDEL 110


>UNIPROTKB|Q9KS62 [details] [associations]
            symbol:VC_1398 "Chemotaxis protein CheY" species:243277
            "Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
            transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
            evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
            SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
            OMA:AGANFYL HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1
            ProteinModelPortal:Q9KS62 DNASU:2614030 GeneID:2614030
            KEGG:vch:VC1398 PATRIC:20081860 ProtClustDB:CLSK794124
            Uniprot:Q9KS62
        Length = 124

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 35/114 (30%), Positives = 62/114 (54%)

Query:    19 RVLVVDDDPIWLRILEKMLRK--CLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             +V+VVDD    +R+  K L +   ++ +   N  E AL+  R  +   D+ + D++MP M
Sbjct:     4 KVMVVDDAST-VRMYHKALLEEIGIFILEASNGVE-ALE--RALEMPVDLFLVDINMPKM 59

Query:    77 DGFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
             DGF L  ++    +L   P +M+S +    D  +G+  GA  Y++KP+  +EL+
Sbjct:    60 DGFTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQ 113


>TIGR_CMR|GSU_0789 [details] [associations]
            symbol:GSU_0789 "response regulator" species:243231
            "Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
            GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
            RefSeq:NP_951846.1 ProteinModelPortal:Q74F20 GeneID:2685295
            KEGG:gsu:GSU0789 PATRIC:22024339 OMA:HAVAARN
            BioCyc:GSUL243231:GH27-807-MONOMER Uniprot:Q74F20
        Length = 125

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 33/106 (31%), Positives = 49/106 (46%)

Query:    17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG-YDIVISDVHMPD 75
             G  VL+ DD+   LR L+KM+      V         L  +     G   +++ D+ +PD
Sbjct:     3 GGSVLICDDEEGMLRYLKKMIEAAGLRVETFGNGTSLLARIEGGDPGDASLLLQDMRLPD 62

Query:    76 MDGFK-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
              DG + LH    L   LPV+MM+   C + V      GA ++L KP
Sbjct:    63 ADGLEILHRVKELRPALPVVMMTAYACDEVVRAAFDGGASDFLPKP 108


>TIGR_CMR|VC_1398 [details] [associations]
            symbol:VC_1398 "chemotaxis protein CheY" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
            activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:AGANFYL
            HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1 ProteinModelPortal:Q9KS62
            DNASU:2614030 GeneID:2614030 KEGG:vch:VC1398 PATRIC:20081860
            ProtClustDB:CLSK794124 Uniprot:Q9KS62
        Length = 124

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 35/114 (30%), Positives = 62/114 (54%)

Query:    19 RVLVVDDDPIWLRILEKMLRK--CLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             +V+VVDD    +R+  K L +   ++ +   N  E AL+  R  +   D+ + D++MP M
Sbjct:     4 KVMVVDDAST-VRMYHKALLEEIGIFILEASNGVE-ALE--RALEMPVDLFLVDINMPKM 59

Query:    77 DGFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
             DGF L  ++    +L   P +M+S +    D  +G+  GA  Y++KP+  +EL+
Sbjct:    60 DGFTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQ 113


>ASPGD|ASPL0000049609 [details] [associations]
            symbol:fphA species:162425 "Emericella nidulans"
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0004673 "protein
            histidine kinase activity" evidence=IDA] [GO:0000909 "sporocarp
            development involved in sexual reproduction" evidence=IMP]
            [GO:0031517 "red light photoreceptor activity" evidence=IDA]
            [GO:0010913 "regulation of sterigmatocystin biosynthetic process"
            evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0071491
            "cellular response to red light" evidence=IMP;IDA] [GO:1900198
            "positive regulation of penicillin biosynthetic process"
            evidence=IMP] [GO:0042318 "penicillin biosynthetic process"
            evidence=IMP] [GO:1900376 "regulation of secondary metabolite
            biosynthetic process" evidence=IMP] [GO:0000155 "phosphorelay
            sensor kinase activity" evidence=IEA] [GO:0000156 "phosphorelay
            response regulator activity" evidence=IEA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008020 "G-protein coupled photoreceptor
            activity" evidence=IEA] [GO:0009584 "detection of visible light"
            evidence=IEA] [GO:0018298 "protein-chromophore linkage"
            evidence=IEA] InterPro:IPR003018 InterPro:IPR001294
            InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
            InterPro:IPR009082 InterPro:IPR013515 InterPro:IPR013654
            InterPro:IPR016132 Pfam:PF00072 Pfam:PF00360 Pfam:PF00512
            Pfam:PF01590 Pfam:PF02518 Pfam:PF08446 PRINTS:PR01033
            PROSITE:PS50046 PROSITE:PS50110 SMART:SM00065 SMART:SM00387
            SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
            GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 EMBL:BN001307
            GO:GO:0005622 GO:GO:0023014 EMBL:AACD01000168 GO:GO:0018298
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
            Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
            SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0008020 RefSeq:XP_682277.1
            ProteinModelPortal:G5EB62 EnsemblFungi:CADANIAT00007846
            GeneID:2868257 KEGG:ani:AN9008.2 HOGENOM:HOG000171704 OMA:KELTGFH
            Uniprot:G5EB62
        Length = 1280

 Score = 133 (51.9 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 38/136 (27%), Positives = 63/136 (46%)

Query:     2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK 61
             S  SS  +  ++ P  LRVLV +DDPI  +I+EK L K  + V +    E   +      
Sbjct:  1115 SGPSSGPSAPERRP--LRVLVAEDDPINAKIIEKRLEKLGHTVQRTVNGEECANAYSAES 1172

Query:    62 NGYDIVISDVHMPDMDGF------KLHEQVG--LEMDLPVIMMSVDGCTQDVMKGVTHGA 113
               +D+V+ D+ MP +DG       + HE       + +P+  +S     +DV   +  G 
Sbjct:  1173 TQWDVVLMDIQMPILDGIESTKRIRQHESQSEVANLHIPIFAVSASLLEKDVQMYMDIGF 1232

Query:   114 CNYLLKPIRIKELRNI 129
               +++KPI    L  +
Sbjct:  1233 DGWIMKPINFVRLNTL 1248


>UNIPROTKB|Q9KR16 [details] [associations]
            symbol:VC_1831 "Sensor histidine kinase" species:243277
            "Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000155
            "phosphorelay sensor kinase activity" evidence=ISS] [GO:0000160
            "phosphorelay signal transduction system" evidence=ISS] [GO:0023014
            "signal transduction by phosphorylation" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
            InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
            Pfam:PF00072 Pfam:PF00512 Pfam:PF00672 Pfam:PF02518 PRINTS:PR00344
            PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
            InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
            GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
            Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
            SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR004010 Pfam:PF02743
            HSSP:Q56312 PIR:C82151 RefSeq:NP_231465.1 ProteinModelPortal:Q9KR16
            DNASU:2613585 GeneID:2613585 KEGG:vch:VC1831 PATRIC:20082704
            OMA:STNAKTA ProtClustDB:CLSK874555 Uniprot:Q9KR16
        Length = 736

 Score = 130 (50.8 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 39/118 (33%), Positives = 62/118 (52%)

Query:    14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
             +P GLRVL+V+D+   + ILE  +R   +E         A+  L+ S   +D+V+ D HM
Sbjct:   599 YP-GLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESS--FDLVLMDNHM 655

Query:    74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKG-----VTHGACNYLLKPIRIKEL 126
             P  DG +   ++  ++ LP   + + GCT DV K      ++ GA + + KPI   EL
Sbjct:   656 PLKDGIQATREIR-QLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHEL 712


>TIGR_CMR|VC_1831 [details] [associations]
            symbol:VC_1831 "sensor histidine kinase" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0000155 "phosphorelay sensor
            kinase activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789
            InterPro:IPR003594 InterPro:IPR003660 InterPro:IPR003661
            InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
            Pfam:PF00672 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
            SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
            GO:GO:0016021 GO:GO:0005524 GO:GO:0006355 GO:GO:0035556
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
            Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
            SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR004010 Pfam:PF02743
            HSSP:Q56312 PIR:C82151 RefSeq:NP_231465.1 ProteinModelPortal:Q9KR16
            DNASU:2613585 GeneID:2613585 KEGG:vch:VC1831 PATRIC:20082704
            OMA:STNAKTA ProtClustDB:CLSK874555 Uniprot:Q9KR16
        Length = 736

 Score = 130 (50.8 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 39/118 (33%), Positives = 62/118 (52%)

Query:    14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
             +P GLRVL+V+D+   + ILE  +R   +E         A+  L+ S   +D+V+ D HM
Sbjct:   599 YP-GLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESS--FDLVLMDNHM 655

Query:    74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKG-----VTHGACNYLLKPIRIKEL 126
             P  DG +   ++  ++ LP   + + GCT DV K      ++ GA + + KPI   EL
Sbjct:   656 PLKDGIQATREIR-QLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHEL 712


>TIGR_CMR|SPO_A0237 [details] [associations]
            symbol:SPO_A0237 "C4-dicarboxylate transport
            transcriptional regulatory protein DctD" species:246200 "Ruegeria
            pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
            activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] [GO:0003677 "DNA binding"
            evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
            evidence=ISS] InterPro:IPR000641 InterPro:IPR001789
            InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
            InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
            PRINTS:PR00819 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
            SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
            Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
            InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
            PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 EMBL:CP000032
            GenomeReviews:CP000032_GR RefSeq:YP_165066.1
            ProteinModelPortal:Q5LKZ2 GeneID:3196880 KEGG:sil:SPOA0237
            PATRIC:23381812 Uniprot:Q5LKZ2
        Length = 446

 Score = 127 (49.8 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 31/117 (26%), Positives = 58/117 (49%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +LV+DDD      L  +L    ++V    RA +     ++  N  D+++SD+ MP M G 
Sbjct:     9 ILVIDDDKSMRLSLVDLLEAAGWQVEAIARATLVA--AKLDDNPPDVILSDIRMPGMTGL 66

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
             +L   +      P++++S  G     ++ +  GA +++ KP   + L +I  H A+Q
Sbjct:    67 ELLSSLDHASAPPLVLISAHGDIPMAVQAMRDGAYSFVEKPYEPRRLLSILTHAAEQ 123


>TIGR_CMR|GSU_2581 [details] [associations]
            symbol:GSU_2581 "sigma-54 dependent transcriptional
            regulator" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
            PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
            GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
            InterPro:IPR025944 PROSITE:PS00688 HSSP:P06143 RefSeq:NP_953627.1
            ProteinModelPortal:Q74A10 GeneID:2687775 KEGG:gsu:GSU2581
            PATRIC:22028017 OMA:LTERIMA ProtClustDB:CLSK763211
            BioCyc:GSUL243231:GH27-2558-MONOMER Uniprot:Q74A10
        Length = 456

 Score = 127 (49.8 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 35/111 (31%), Positives = 64/111 (57%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             ++L VDDD + L +LE +L    +  +T  + A+ AL +L   +   D++ISD+ M  M+
Sbjct:     5 KILAVDDDELSLLMLENLLADAGFAPLTAVSGAQ-ALALLE--REHVDLLISDLIMEGMN 61

Query:    78 GFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
             G +L ++V     ++PVI+++  G  +  ++ +  GA +YL KP   + LR
Sbjct:    62 GLELLDRVRERYPNVPVIVVTARGSVESAVEAMRRGAYDYLAKPFNPEVLR 112


>UNIPROTKB|Q0PBM2 [details] [associations]
            symbol:cheA "Chemotaxis histidine kinase" species:192222
            "Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819"
            [GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
            InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
            InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
            Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
            PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
            SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
            InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
            GO:GO:0035556 GO:GO:0006935 GO:GO:0023014 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155 Gene3D:3.30.565.10
            SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
            SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560 SUPFAM:SSF50341
            EMBL:AL111168 GenomeReviews:AL111168_GR OMA:CDHGIED
            ProtClustDB:CLSK872488 PIR:B81447 RefSeq:YP_002343725.1
            ProteinModelPortal:Q0PBM2 IntAct:Q0PBM2 GeneID:904608
            KEGG:cje:Cj0284c PATRIC:20057487 HOGENOM:HOG000255264
            BioCyc:CJEJ192222:GJTS-263-MONOMER Uniprot:Q0PBM2
        Length = 769

 Score = 130 (50.8 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 32/127 (25%), Positives = 63/127 (49%)

Query:     6 SSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
             SS     + P+  +VL+VDD  +   +++K L      + +      AL++++  ++  D
Sbjct:   635 SSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHDID 694

Query:    66 IVISDVHMPDMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
              ++ D+ MP MDG+ L  ++       +LP+I ++      D ++GV  G   Y+ KP  
Sbjct:   695 AMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEYITKPYS 754

Query:   123 IKELRNI 129
              + L N+
Sbjct:   755 PEYLENV 761


>UNIPROTKB|Q5HWI3 [details] [associations]
            symbol:cheA "Chemotaxis protein CheA" species:195099
            "Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
            activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
            [GO:0016301 "kinase activity" evidence=ISS] InterPro:IPR001789
            InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
            InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
            Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
            PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
            SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
            InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
            GO:GO:0035556 GO:GO:0006935 GO:GO:0016301 GO:GO:0004871
            EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0023014 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
            Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
            Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560
            SUPFAM:SSF50341 OMA:CDHGIED ProtClustDB:CLSK872488
            HOGENOM:HOG000255264 RefSeq:YP_178352.1 ProteinModelPortal:Q5HWI3
            STRING:Q5HWI3 GeneID:3231094 KEGG:cjr:CJE0332 PATRIC:20042366
            BioCyc:CJEJ195099:GJC0-337-MONOMER Uniprot:Q5HWI3
        Length = 769

 Score = 130 (50.8 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 32/127 (25%), Positives = 63/127 (49%)

Query:     6 SSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
             SS     + P+  +VL+VDD  +   +++K L      + +      AL++++  ++  D
Sbjct:   635 SSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHDID 694

Query:    66 IVISDVHMPDMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
              ++ D+ MP MDG+ L  ++       +LP+I ++      D ++GV  G   Y+ KP  
Sbjct:   695 AMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEYITKPYS 754

Query:   123 IKELRNI 129
              + L N+
Sbjct:   755 PEYLENV 761


>TIGR_CMR|CJE_0332 [details] [associations]
            symbol:CJE_0332 "chemotaxis protein CheA" species:195099
            "Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
            activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
            [GO:0016301 "kinase activity" evidence=ISS] InterPro:IPR001789
            InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
            InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
            Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
            PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
            SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
            InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
            GO:GO:0035556 GO:GO:0006935 GO:GO:0016301 GO:GO:0004871
            EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0023014 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
            Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
            Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560
            SUPFAM:SSF50341 OMA:CDHGIED ProtClustDB:CLSK872488
            HOGENOM:HOG000255264 RefSeq:YP_178352.1 ProteinModelPortal:Q5HWI3
            STRING:Q5HWI3 GeneID:3231094 KEGG:cjr:CJE0332 PATRIC:20042366
            BioCyc:CJEJ195099:GJC0-337-MONOMER Uniprot:Q5HWI3
        Length = 769

 Score = 130 (50.8 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 32/127 (25%), Positives = 63/127 (49%)

Query:     6 SSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
             SS     + P+  +VL+VDD  +   +++K L      + +      AL++++  ++  D
Sbjct:   635 SSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHDID 694

Query:    66 IVISDVHMPDMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
              ++ D+ MP MDG+ L  ++       +LP+I ++      D ++GV  G   Y+ KP  
Sbjct:   695 AMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEYITKPYS 754

Query:   123 IKELRNI 129
              + L N+
Sbjct:   755 PEYLENV 761


>TIGR_CMR|CPS_1520 [details] [associations]
            symbol:CPS_1520 "chemotaxis protein CheY" species:167879
            "Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
            activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000083
            GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 OMA:LEANDIY
            KO:K03413 RefSeq:YP_268262.1 ProteinModelPortal:Q485K3 SMR:Q485K3
            STRING:Q485K3 GeneID:3522501 KEGG:cps:CPS_1520 PATRIC:21466247
            BioCyc:CPSY167879:GI48-1601-MONOMER Uniprot:Q485K3
        Length = 127

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 30/114 (26%), Positives = 59/114 (51%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLY-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             ++VLVVDD     RI++ +LR   +  + + +    AL ML+     +D V++D +MP M
Sbjct:     5 MKVLVVDDFSTMRRIVKNLLRDLGFTNIQEADDGNTALPMLQ--GGDFDFVVTDWNMPGM 62

Query:    77 DGFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
              G  L + +  + +L   PV++++ +   + ++     G   Y++KP     L+
Sbjct:    63 QGIDLLKAIRADANLSHIPVLLITAEAKKEQIIMAAQAGVNGYIVKPFTAATLK 116


>TIGR_CMR|GSU_2534 [details] [associations]
            symbol:GSU_2534 "sensory box/response regulator"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0000155
            "phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR000014 InterPro:IPR001054 InterPro:IPR001789
            Pfam:PF00072 Pfam:PF13188 PROSITE:PS50110 SMART:SM00091
            SMART:SM00448 InterPro:IPR001610 Pfam:PF00990 GO:GO:0006355
            GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
            SUPFAM:SSF55073 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0016849
            GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
            PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HOGENOM:HOG000167205 RefSeq:NP_953580.1 ProteinModelPortal:Q74A56
            GeneID:2687798 KEGG:gsu:GSU2534 PATRIC:22027917 OMA:FESVIDW
            ProtClustDB:CLSK828874 BioCyc:GSUL243231:GH27-2510-MONOMER
            Uniprot:Q74A56
        Length = 452

 Score = 126 (49.4 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 28/107 (26%), Positives = 61/107 (57%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +R+L ++D+P   R+L+K L +  Y+V     A+ A  +  +    YD++++D  MP   
Sbjct:     7 IRILYMEDNPALARLLQKSLLRKGYQVDVV--ADGAAGLTVLEGTSYDLILADYDMPVCG 64

Query:    78 GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
             G ++   +    +D+PVIM++ +G  +  ++ +  GA +Y++K + +
Sbjct:    65 GIEVIATLAARGVDIPVIMVTGNGSEKVAVEALKQGAADYVVKDLEM 111


>TIGR_CMR|GSU_0470 [details] [associations]
            symbol:GSU_0470 "sigma-54 dependent response regulator"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
            InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
            Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
            SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
            Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
            InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
            PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
            RefSeq:NP_951529.1 ProteinModelPortal:Q74FY2 GeneID:2686241
            KEGG:gsu:GSU0470 PATRIC:22023688 OMA:QYRLREY ProtClustDB:CLSK827855
            BioCyc:GSUL243231:GH27-461-MONOMER Uniprot:Q74FY2
        Length = 453

 Score = 126 (49.4 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 29/106 (27%), Positives = 59/106 (55%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             R+L+ +DD  +   L  +L+   Y++ +    E AL +LR  +  +D+V+SD+ MP + G
Sbjct:     4 RILIAEDDSTFRGFLRTVLKGEGYDIREAADGEEALALLR--RESFDLVLSDLRMPGIGG 61

Query:    79 FKLHEQVGLEMDLP--VIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
              +L  +   + D P   ++++  G  ++ +  V  GA ++L KP++
Sbjct:    62 LELL-RASRDDDYPPAFVILTAFGTIEEAVAAVKEGAADFLTKPLK 106


>TIGR_CMR|GSU_0963 [details] [associations]
            symbol:GSU_0963 "sigma-54 dependent DNA-binding response
            regulator" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
            InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
            PROSITE:PS00688 HSSP:P06143 RefSeq:NP_952017.2 GeneID:2687572
            KEGG:gsu:GSU0963 PATRIC:22024702 ProtClustDB:CLSK828118
            BioCyc:GSUL243231:GH27-974-MONOMER Uniprot:Q74EJ9
        Length = 464

 Score = 126 (49.4 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 34/141 (24%), Positives = 73/141 (51%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             R++++D++    R++E +L    Y V    R+  A++  +     +D+V+SD+ MP MDG
Sbjct:     6 RIMLIDNEEGLCRMMEAVLADSGYAVKGYTRSFEAVEEFKAGD--WDLVVSDIKMPGMDG 63

Query:    79 FKLHEQVGLEMDL-PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
              ++ +++  +  L PVIM++     +  ++ +  GA + + KP   +EL    ++  +  
Sbjct:    64 LEVLQRIKAKDPLVPVIMITAYATVETSIQALRRGAYDMVTKPFEPEELLYRVKNALKHT 123

Query:   138 KPFEESDDSYSVNQGNWRTSN 158
             +  EE+ +      G +R  N
Sbjct:   124 QLLEENRELREELVGKFRFDN 144


>UNIPROTKB|Q74AX6 [details] [associations]
            symbol:cheY40H-1 "Response receiver CheY associated with
            MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
            "chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
            GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
            RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
            KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
            BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
        Length = 121

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 31/115 (26%), Positives = 63/115 (54%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCL-YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             R+L+ +D      +L   ++    +EV + +    AL +L   +   D++I+D++MPD++
Sbjct:     3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLPRER--LDLIITDINMPDIN 60

Query:    78 GFKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
             G +L   V    +   +P+ ++S +G  +D  KG++ GA  YL+KP     L+++
Sbjct:    61 GLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115


>TIGR_CMR|GSU_2223 [details] [associations]
            symbol:GSU_2223 "chemotaxis protein CheY" species:243231
            "Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
            activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
            GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
            HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
            GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
            ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
            Uniprot:Q74AX6
        Length = 121

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 31/115 (26%), Positives = 63/115 (54%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCL-YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             R+L+ +D      +L   ++    +EV + +    AL +L   +   D++I+D++MPD++
Sbjct:     3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLPRER--LDLIITDINMPDIN 60

Query:    78 GFKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
             G +L   V    +   +P+ ++S +G  +D  KG++ GA  YL+KP     L+++
Sbjct:    61 GLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115


>UNIPROTKB|Q9KSB0 [details] [associations]
            symbol:VC_1349 "Sensory box sensor histidine
            kinase/response regulator" species:243277 "Vibrio cholerae O1
            biovar El Tor str. N16961" [GO:0000155 "phosphorelay sensor kinase
            activity" evidence=ISS] [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] [GO:0023014 "signal transduction
            by phosphorylation" evidence=ISS] [GO:0035556 "intracellular signal
            transduction" evidence=ISS] InterPro:IPR000014 InterPro:IPR000700
            InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
            InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
            Pfam:PF00072 Pfam:PF00512 Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344
            PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50894
            SMART:SM00073 SMART:SM00091 SMART:SM00387 SMART:SM00388
            SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610 GO:GO:0005524
            GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0005622 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
            Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
            SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
            InterPro:IPR013656 Pfam:PF08448 PIR:H82211 RefSeq:NP_230993.1
            ProteinModelPortal:Q9KSB0 DNASU:2614803 GeneID:2614803
            KEGG:vch:VC1349 PATRIC:20081774 OMA:NDSARNI ProtClustDB:CLSK794089
            Uniprot:Q9KSB0
        Length = 1331

 Score = 131 (51.2 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 36/139 (25%), Positives = 68/139 (48%)

Query:    16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
             AG  +L+V+D+ +   +   +L+     V   N  + AL+  R+    +D+V+ D+ MP 
Sbjct:   990 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALE--RLEHADFDLVLMDMQMPV 1047

Query:    76 MDGFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
             MDG    E +        LP++ M+ +    D+ + +  G  ++L KPI + +   + +H
Sbjct:  1048 MDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRH 1107

Query:   133 VAQQPKPFEESDDSYSVNQ 151
               Q     E+S  S+S N+
Sbjct:  1108 FLQVSD--EQSFSSHSPNK 1124


>TIGR_CMR|VC_1349 [details] [associations]
            symbol:VC_1349 "sensory box sensor histidine
            kinase/response regulator" species:686 "Vibrio cholerae O1 biovar
            El Tor" [GO:0000155 "phosphorelay sensor kinase activity"
            evidence=ISS] [GO:0000156 "phosphorelay response regulator
            activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR000014
            InterPro:IPR000700 InterPro:IPR001789 InterPro:IPR003594
            InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
            InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF01627
            Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112
            PROSITE:PS50113 PROSITE:PS50894 SMART:SM00073 SMART:SM00091
            SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
            InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 SMART:SM00086
            TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
            SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
            SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 PIR:H82211
            RefSeq:NP_230993.1 ProteinModelPortal:Q9KSB0 DNASU:2614803
            GeneID:2614803 KEGG:vch:VC1349 PATRIC:20081774 OMA:NDSARNI
            ProtClustDB:CLSK794089 Uniprot:Q9KSB0
        Length = 1331

 Score = 131 (51.2 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 36/139 (25%), Positives = 68/139 (48%)

Query:    16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
             AG  +L+V+D+ +   +   +L+     V   N  + AL+  R+    +D+V+ D+ MP 
Sbjct:   990 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALE--RLEHADFDLVLMDMQMPV 1047

Query:    76 MDGFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
             MDG    E +        LP++ M+ +    D+ + +  G  ++L KPI + +   + +H
Sbjct:  1048 MDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRH 1107

Query:   133 VAQQPKPFEESDDSYSVNQ 151
               Q     E+S  S+S N+
Sbjct:  1108 FLQVSD--EQSFSSHSPNK 1124


>TIGR_CMR|SO_4002 [details] [associations]
            symbol:SO_4002 "sensory transduction histidine kinase"
            species:211586 "Shewanella oneidensis MR-1" [GO:0000155
            "phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR000014 InterPro:IPR001638 InterPro:IPR001789
            InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
            InterPro:IPR008207 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00497
            Pfam:PF00512 Pfam:PF01627 Pfam:PF02518 Pfam:PF13188 PRINTS:PR00344
            PROSITE:PS50110 PROSITE:PS50894 SMART:SM00062 SMART:SM00073
            SMART:SM00091 SMART:SM00387 SMART:SM00388 SMART:SM00448
            InterPro:IPR005467 InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020
            GO:GO:0006355 GO:GO:0035556 GO:GO:0005215 GO:GO:0030288
            GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0023014
            SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
            Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
            Gene3D:1.20.120.160 SUPFAM:SSF47226 InterPro:IPR025997 Pfam:PF13407
            HSSP:Q9A5I4 RefSeq:NP_719532.2 ProteinModelPortal:Q8EAA6
            GeneID:1171630 KEGG:son:SO_4002 PATRIC:23527674
            HOGENOM:HOG000286637 ProtClustDB:CLSK577303 Uniprot:Q8EAA6
        Length = 1702

 Score = 132 (51.5 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 36/141 (25%), Positives = 75/141 (53%)

Query:    16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
             AG+ +L+V+D+ +   +  ++LR+    VT     + AL +L  ++  +D V+ D  MP 
Sbjct:  1348 AGVELLLVEDNYLNQELAVELLRQAGARVTVAQHGQEALTLL--AQQSFDCVLMDGQMPV 1405

Query:    76 MDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN-IWQ 131
             MDG++    +  +    DLP+I M+ +    D  + +  G    + KP ++++L + I Q
Sbjct:  1406 MDGYEATRLIRAQPQFADLPIIAMTANAMDSDRERALAAGMNAQINKPFQVQQLYSTIAQ 1465

Query:   132 HVA-QQPKPFEESDDSYSVNQ 151
             HV+    +   ES +++ +++
Sbjct:  1466 HVSVHSVQSLPESPEAHDLDK 1486


>UNIPROTKB|Q9KPC0 [details] [associations]
            symbol:VC_2453 "Sensor histidine kinase/response regulator"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
            evidence=ISS] [GO:0035556 "intracellular signal transduction"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
            InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
            InterPro:IPR008207 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
            Pfam:PF00672 Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344
            PROSITE:PS50110 PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073
            SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
            InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
            Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
            SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
            KO:K07678 OMA:ANQVISQ ProtClustDB:PRK11107 InterPro:IPR019247
            Pfam:PF09984 HSSP:Q9A5I4 PIR:B82075 RefSeq:NP_232082.1
            ProteinModelPortal:Q9KPC0 DNASU:2612995 GeneID:2612995
            KEGG:vch:VC2453 PATRIC:20083927 Uniprot:Q9KPC0
        Length = 927

 Score = 129 (50.5 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 35/125 (28%), Positives = 65/125 (52%)

Query:    11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
             +D+ P  L V+ VDD+P  L+++  +L++ +  V  C   + A++  +  +  +DI++ D
Sbjct:   660 ADKLP--LCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQ--FDIILMD 715

Query:    71 VHMPDMDGF---KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
             + MP MDG    K  +Q+    D PVI ++      +  + +  G  +YL KPI    L+
Sbjct:   716 IQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQ 775

Query:   128 NIWQH 132
              +  H
Sbjct:   776 QVLVH 780


>TIGR_CMR|VC_2453 [details] [associations]
            symbol:VC_2453 "sensor histidine kinase/response regulator"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
            "phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
            InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
            InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
            Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
            PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073 SMART:SM00304
            SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
            GO:GO:0016021 GO:GO:0005524 GO:GO:0006355 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
            Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
            SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
            KO:K07678 OMA:ANQVISQ ProtClustDB:PRK11107 InterPro:IPR019247
            Pfam:PF09984 HSSP:Q9A5I4 PIR:B82075 RefSeq:NP_232082.1
            ProteinModelPortal:Q9KPC0 DNASU:2612995 GeneID:2612995
            KEGG:vch:VC2453 PATRIC:20083927 Uniprot:Q9KPC0
        Length = 927

 Score = 129 (50.5 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 35/125 (28%), Positives = 65/125 (52%)

Query:    11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
             +D+ P  L V+ VDD+P  L+++  +L++ +  V  C   + A++  +  +  +DI++ D
Sbjct:   660 ADKLP--LCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQ--FDIILMD 715

Query:    71 VHMPDMDGF---KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
             + MP MDG    K  +Q+    D PVI ++      +  + +  G  +YL KPI    L+
Sbjct:   716 IQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQ 775

Query:   128 NIWQH 132
              +  H
Sbjct:   776 QVLVH 780


>UNIPROTKB|O68318 [details] [associations]
            symbol:vieA "Response regulator" species:666 "Vibrio
            cholerae" [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] [GO:0035556 "intracellular signal transduction"
            evidence=ISS] InterPro:IPR000792 InterPro:IPR001789
            InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038
            PROSITE:PS00622 PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421
            SMART:SM00448 Pfam:PF00563 GenomeReviews:AE003852_GR GO:GO:0043565
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GO:GO:0005622 Gene3D:3.20.20.450 InterPro:IPR001633 SMART:SM00052
            SUPFAM:SSF141868 PROSITE:PS50883 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 SUPFAM:SSF46894 EMBL:AF031552 PIR:T09113
            HSSP:P11470 ProteinModelPortal:O68318 DNASU:2613783 PATRIC:20082366
            ProtClustDB:CLSK794295 Uniprot:O68318
        Length = 584

 Score = 126 (49.4 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 37/132 (28%), Positives = 69/132 (52%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKC-LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             +++++V+DD I    L+  LR+  L +V        AL++   +K G D++  D+ MP M
Sbjct:     1 MKIMIVEDDRIQATSLKLKLRQLGLDDVILAENGFAALELC--NKVGIDLMFCDIRMPQM 58

Query:    77 DGFKLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACN-----Y---LLKPIRIKELR 127
             DG  L  Q+ L+   L V+++S     +D +  +TH  C+     Y   L KP  +++L+
Sbjct:    59 DGISLLSQLSLQAPKLGVVILSA---VEDTILELTHNMCSLAGFAYVDRLPKPYEVEDLQ 115

Query:   128 NIWQHVAQQPKP 139
              + +   +Q +P
Sbjct:   116 RVVEGFQKQTEP 127


>TIGR_CMR|VC_1652 [details] [associations]
            symbol:VC_1652 "response regulator VieA" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay
            response regulator activity" evidence=ISS] [GO:0000160
            "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR000792 InterPro:IPR001789 InterPro:IPR016032
            Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038 PROSITE:PS00622
            PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421 SMART:SM00448
            Pfam:PF00563 GenomeReviews:AE003852_GR GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
            Gene3D:3.20.20.450 InterPro:IPR001633 SMART:SM00052
            SUPFAM:SSF141868 PROSITE:PS50883 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 SUPFAM:SSF46894 EMBL:AF031552 PIR:T09113
            HSSP:P11470 ProteinModelPortal:O68318 DNASU:2613783 PATRIC:20082366
            ProtClustDB:CLSK794295 Uniprot:O68318
        Length = 584

 Score = 126 (49.4 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 37/132 (28%), Positives = 69/132 (52%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKC-LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             +++++V+DD I    L+  LR+  L +V        AL++   +K G D++  D+ MP M
Sbjct:     1 MKIMIVEDDRIQATSLKLKLRQLGLDDVILAENGFAALELC--NKVGIDLMFCDIRMPQM 58

Query:    77 DGFKLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACN-----Y---LLKPIRIKELR 127
             DG  L  Q+ L+   L V+++S     +D +  +TH  C+     Y   L KP  +++L+
Sbjct:    59 DGISLLSQLSLQAPKLGVVILSA---VEDTILELTHNMCSLAGFAYVDRLPKPYEVEDLQ 115

Query:   128 NIWQHVAQQPKP 139
              + +   +Q +P
Sbjct:   116 RVVEGFQKQTEP 127


>UNIPROTKB|Q4GZK4 [details] [associations]
            symbol:rr7 "Type A response regulator 7" species:39946
            "Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
            stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
            GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938076
            ProteinModelPortal:Q4GZK4 KEGG:dosa:Os07t0449700-01 Gramene:Q4GZK4
            Uniprot:Q4GZK4
        Length = 206

 Score = 122 (48.0 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 32/119 (26%), Positives = 63/119 (52%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             V+ VDD  +   ++  +LR+  Y     +  + AL++L    N   ++I+D  MP+M G+
Sbjct:    93 VMAVDDSSVDRAVITALLRRSKYR----DSGKRALEILGSEPN-VSMIITDYWMPEMTGY 147

Query:    80 KLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135
              L +++    +L   PV++MS +     + + +  GA ++LLKP+R  ++  I   + Q
Sbjct:   148 DLLKKIKESSELKQIPVVIMSSENVPTRISRCLEEGAEDFLLKPVRPADISRITSRMLQ 206


>TIGR_CMR|CPS_0681 [details] [associations]
            symbol:CPS_0681 "DNA-binding response regulator"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
            EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            HOGENOM:HOG000034819 RefSeq:YP_267431.1 ProteinModelPortal:Q488T3
            STRING:Q488T3 GeneID:3522148 KEGG:cps:CPS_0681 PATRIC:21464685
            BioCyc:CPSY167879:GI48-768-MONOMER Uniprot:Q488T3
        Length = 246

 Score = 123 (48.4 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 33/113 (29%), Positives = 63/113 (55%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L+V+DD      + + L +  + VT   R ++ +D+++  KN  DIV+ DV +P ++G 
Sbjct:     4 ILLVEDDISLADWVSEYLTEQGFNVTHVARGDLVIDVIK--KNTTDIVLLDVMLPGLNGI 61

Query:    80 KL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             ++      HEQ      +P+IM++      D + G+  GA +Y++KP+R + L
Sbjct:    62 EVCRLIRQHEQ---SKQVPIIMLTARADEFDEVIGLEAGADDYVIKPVRPRAL 111


>TIGR_CMR|BA_1660 [details] [associations]
            symbol:BA_1660 "chemotaxis response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
            Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
            GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
            OMA:PFQAPKV RefSeq:NP_844107.1 RefSeq:YP_018295.1
            RefSeq:YP_027808.1 HSSP:Q56312 ProteinModelPortal:Q81SI8 SMR:Q81SI8
            DNASU:1083740 EnsemblBacteria:EBBACT00000009828
            EnsemblBacteria:EBBACT00000015597 EnsemblBacteria:EBBACT00000020958
            GeneID:1083740 GeneID:2817294 GeneID:2851539 KEGG:ban:BA_1660
            KEGG:bar:GBAA_1660 KEGG:bat:BAS1541 ProtClustDB:CLSK916318
            BioCyc:BANT260799:GJAJ-1613-MONOMER
            BioCyc:BANT261594:GJ7F-1681-MONOMER Uniprot:Q81SI8
        Length = 122

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 32/106 (30%), Positives = 57/106 (53%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY-DIVISDVHMPDMD 77
             ++LVVDD  +++R + K L K   E      AE  ++ ++  K    DIV  D+ MP+MD
Sbjct:     4 KILVVDD-AMFMRTMIKNLLKSNSEFEVIGEAENGVEAIQKYKELQPDIVTLDITMPEMD 62

Query:    78 GFK-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
             G + L E + ++    V++ S  G    V+  +  GA ++++KP +
Sbjct:    63 GLEALKEIIKIDASAKVVICSAMGQQGMVLDAIKGGAKDFIVKPFQ 108


>TIGR_CMR|DET_0177 [details] [associations]
            symbol:DET_0177 "DNA-binding response regulator"
            species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
            Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
            GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
            GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
            RefSeq:YP_180925.1 ProteinModelPortal:Q3ZA24 STRING:Q3ZA24
            GeneID:3230544 KEGG:det:DET0177 PATRIC:21607433 OMA:CIIKNEA
            ProtClustDB:CLSK837633 BioCyc:DETH243164:GJNF-177-MONOMER
            Uniprot:Q3ZA24
        Length = 226

 Score = 122 (48.0 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 27/107 (25%), Positives = 58/107 (54%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYE--VTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
             + +L+V+D+      +  +LR   ++  +T C     A++ +   K   D+V+ D+ +PD
Sbjct:     1 MNILIVEDNDAAASTISSILRLSYHDAKITVCRTGYEAVESVNSDKA--DLVLLDLGLPD 58

Query:    76 MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
             M+G K+ +++      P+I+++     ++V+K +  GA  Y+ KP R
Sbjct:    59 MNGLKVLDEIHPITGAPIIVVTACEDEENVLKALEQGADEYITKPFR 105


>TIGR_CMR|SPO_1624 [details] [associations]
            symbol:SPO_1624 "DNA-binding response regulator"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
            response regulator activity" evidence=ISS] [GO:0000160
            "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
            GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483
            RefSeq:YP_166865.1 ProteinModelPortal:Q5LSZ0 GeneID:3193367
            KEGG:sil:SPO1624 PATRIC:23376571 OMA:FAVECAG Uniprot:Q5LSZ0
        Length = 226

 Score = 122 (48.0 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 34/126 (26%), Positives = 65/126 (51%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             RVL+V+DD      L K   +  + V +C   +    +   +  G+D ++ D  +P +DG
Sbjct:     4 RVLIVEDDAETREFLAKGFAEEGFAV-EC-AGDGREGLYHATDGGFDAMVLDRMLPGLDG 61

Query:    79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
               L + V    ++ PVIM++      + +KG+  GA +YL+KP   +EL    + + ++P
Sbjct:    62 LALIKSVRAAGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQELLARVEALLRRP 121

Query:   138 KPFEES 143
             +  +E+
Sbjct:   122 QDTQEA 127


>TIGR_CMR|CPS_1826 [details] [associations]
            symbol:CPS_1826 "sensor protein TorS" species:167879
            "Colwellia psychrerythraea 34H" [GO:0000155 "phosphorelay sensor
            kinase activity" evidence=ISS] [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789
            InterPro:IPR003594 InterPro:IPR003660 InterPro:IPR003661
            InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
            InterPro:IPR014302 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
            PIRSF:PIRSF036437 PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50885
            PROSITE:PS50894 SMART:SM00073 SMART:SM00304 SMART:SM00387
            SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
            GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
            EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0023014 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
            Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
            SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
            KO:K07647 OMA:PNQGRSR TIGRFAMs:TIGR02956 RefSeq:YP_268556.1
            ProteinModelPortal:Q484F9 STRING:Q484F9 GeneID:3521440
            KEGG:cps:CPS_1826 PATRIC:21466801 ProtClustDB:CLSK869735
            BioCyc:CPSY167879:GI48-1896-MONOMER Uniprot:Q484F9
        Length = 1000

 Score = 127 (49.8 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 32/114 (28%), Positives = 61/114 (53%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             +VL+V+D+ I L +   ++ K  ++VT       AL    M  N +D+ + D+++PD+DG
Sbjct:   720 QVLIVEDNEINLDVACALVEKLGHKVTAAKDGASALKC--MHNNRFDLALLDINLPDIDG 777

Query:    79 FKLHEQ---VGLEMDLP--VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
               L +Q   +  E   P   I +S     +D+ K +  G   ++ KP+++K+L+
Sbjct:   778 VTLSQQLKVIAKEKQTPFKTIAVSAHVFNEDIAKFIKSGFDGFVAKPVQMKKLK 831


>TAIR|locus:2011286 [details] [associations]
            symbol:ARR7 "response regulator 7" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
            signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
            maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
            stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
            "circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
            germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
            metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
            system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
            GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
            ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
            IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
            ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
            EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
            GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
            PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
            GO:GO:0019827 Uniprot:Q9ZWS7
        Length = 206

 Score = 121 (47.7 bits), Expect = 6.8e-07, P = 6.8e-07
 Identities = 37/141 (26%), Positives = 72/141 (51%)

Query:     3 PASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRM--- 59
             PA   + V+   P  L VL VDD  +  +++E++LR    +VT       AL  L +   
Sbjct:    12 PAGGDLTVTT--PE-LHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGG 68

Query:    60 --SKNGYDI----VISDVHMPDMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVT 110
               + N  D+    +++D  MP + G+ L +++       ++PV++MS +     + + + 
Sbjct:    69 KGASNLKDLKVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLK 128

Query:   111 HGACNYLLKPIRIKELRNIWQ 131
              GA  +LLKP+++ +++ I Q
Sbjct:   129 EGAEEFLLKPVKLADVKRIKQ 149


>TIGR_CMR|BA_0577 [details] [associations]
            symbol:BA_0577 "response regulator" species:198094
            "Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789
            InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
            SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
            EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GO:GO:0003677 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
            HOGENOM:HOG000034816 RefSeq:NP_843111.2 RefSeq:YP_026824.1
            ProteinModelPortal:Q81VC0 DNASU:1087932
            EnsemblBacteria:EBBACT00000008382 EnsemblBacteria:EBBACT00000024391
            GeneID:1087932 GeneID:2849175 KEGG:ban:BA_0577 KEGG:bat:BAS0546
            PATRIC:18778756 KO:K11615 ProtClustDB:CLSK915867
            BioCyc:BANT260799:GJAJ-606-MONOMER Uniprot:Q81VC0
        Length = 235

 Score = 122 (48.0 bits), Expect = 7.2e-07, P = 7.2e-07
 Identities = 33/120 (27%), Positives = 66/120 (55%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCL-YEVTKC-NRAEIALDMLRMSKNGYDIVISDVHMPD 75
             ++VL+V+DDP+   +    L +   +E+ +  N  + A+++L  S+   D+V+ D+ MP+
Sbjct:     2 IKVLIVEDDPMVAMLNTHYLEQVGGFELVQAVNSIKSAIEVLEESR--IDLVLLDIFMPE 59

Query:    76 MDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI---RIKELRNIWQ 131
               GF+L   +   E ++ ++M+S       + K + +G  +YL+KP    R KE   I++
Sbjct:    60 ETGFELLMYIRNQEKEIDIMMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALTIYR 119


>CGD|CAL0003344 [details] [associations]
            symbol:SLN1 species:5476 "Candida albicans" [GO:0007234
            "osmosensory signaling via phosphorelay pathway" evidence=IGI]
            [GO:0004673 "protein histidine kinase activity" evidence=ISS;IDA]
            [GO:0005887 "integral to plasma membrane" evidence=IEA] [GO:0097308
            "cellular response to farnesol" evidence=IMP] [GO:0036180
            "filamentous growth of a population of unicellular organisms in
            response to biotic stimulus" evidence=IMP] [GO:1900445 "positive
            regulation of filamentous growth of a population of unicellular
            organisms in response to biotic stimulus" evidence=IMP] [GO:0046777
            "protein autophosphorylation" evidence=IEA] [GO:0018106
            "peptidyl-histidine phosphorylation" evidence=IEA] [GO:0006469
            "negative regulation of protein kinase activity" evidence=IEA]
            [GO:0005034 "osmosensor activity" evidence=IEA] [GO:0009927
            "histidine phosphotransfer kinase activity" evidence=IEA]
            InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
            InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
            Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
            PROSITE:PS50110 SMART:SM00304 SMART:SM00387 SMART:SM00388
            SMART:SM00448 InterPro:IPR005467 CGD:CAL0003344 GO:GO:0016021
            GO:GO:0005524 GO:GO:0036180 GO:GO:1900445 GO:GO:0006355
            GO:GO:0035556 GO:GO:0005622 GO:GO:0023014 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
            Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
            SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0004673 EMBL:AACQ01000049
            EMBL:AACQ01000048 GO:GO:0007234 GO:GO:0097308 KO:K11231
            RefSeq:XP_717880.1 RefSeq:XP_717946.1 ProteinModelPortal:Q5A872
            SMR:Q5A872 STRING:Q5A872 GeneID:3640422 GeneID:3640485
            KEGG:cal:CaO19.10766 KEGG:cal:CaO19.3256 Uniprot:Q5A872
        Length = 1373

 Score = 128 (50.1 bits), Expect = 7.2e-07, P = 7.2e-07
 Identities = 32/119 (26%), Positives = 67/119 (56%)

Query:    18 LRVLVVDDDPIWLRILEKMLRK-CLYEVTK-CNRAEIALDMLRMS-KNG--YDIVISDVH 72
             LRVLV +D+ +   ++ +ML++  +  +T  CN A+ A+D ++ S +N   +D++  DV 
Sbjct:  1244 LRVLVAEDNSVNQEVISRMLKQEGITNLTMACNGAK-AIDFVKESIENNENFDLIFMDVQ 1302

Query:    73 MPDMDGFKLHEQV--GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
             MP++DG K  + +   L+ + P+I ++      +V + +  G   ++ KPI    ++ +
Sbjct:  1303 MPEVDGLKATKMIRKNLQYNKPIIALTAFADESNVKECLNSGMSGFITKPISKTNIKKV 1361


>UNIPROTKB|Q5A872 [details] [associations]
            symbol:SLN1 "Potential response regulator protein"
            species:237561 "Candida albicans SC5314" [GO:0004673 "protein
            histidine kinase activity" evidence=ISS;IDA] [GO:0007234
            "osmosensory signaling via phosphorelay pathway" evidence=IGI]
            [GO:0036180 "filamentous growth of a population of unicellular
            organisms in response to biotic stimulus" evidence=IMP] [GO:0097308
            "cellular response to farnesol" evidence=IMP] [GO:1900445 "positive
            regulation of filamentous growth of a population of unicellular
            organisms in response to biotic stimulus" evidence=IMP]
            InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
            InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
            Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
            PROSITE:PS50110 SMART:SM00304 SMART:SM00387 SMART:SM00388
            SMART:SM00448 InterPro:IPR005467 CGD:CAL0003344 GO:GO:0016021
            GO:GO:0005524 GO:GO:0036180 GO:GO:1900445 GO:GO:0006355
            GO:GO:0035556 GO:GO:0005622 GO:GO:0023014 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
            Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
            SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0004673 EMBL:AACQ01000049
            EMBL:AACQ01000048 GO:GO:0007234 GO:GO:0097308 KO:K11231
            RefSeq:XP_717880.1 RefSeq:XP_717946.1 ProteinModelPortal:Q5A872
            SMR:Q5A872 STRING:Q5A872 GeneID:3640422 GeneID:3640485
            KEGG:cal:CaO19.10766 KEGG:cal:CaO19.3256 Uniprot:Q5A872
        Length = 1373

 Score = 128 (50.1 bits), Expect = 7.2e-07, P = 7.2e-07
 Identities = 32/119 (26%), Positives = 67/119 (56%)

Query:    18 LRVLVVDDDPIWLRILEKMLRK-CLYEVTK-CNRAEIALDMLRMS-KNG--YDIVISDVH 72
             LRVLV +D+ +   ++ +ML++  +  +T  CN A+ A+D ++ S +N   +D++  DV 
Sbjct:  1244 LRVLVAEDNSVNQEVISRMLKQEGITNLTMACNGAK-AIDFVKESIENNENFDLIFMDVQ 1302

Query:    73 MPDMDGFKLHEQV--GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
             MP++DG K  + +   L+ + P+I ++      +V + +  G   ++ KPI    ++ +
Sbjct:  1303 MPEVDGLKATKMIRKNLQYNKPIIALTAFADESNVKECLNSGMSGFITKPISKTNIKKV 1361


>TIGR_CMR|BA_5581 [details] [associations]
            symbol:BA_5581 "stage 0 sporulation protein F"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0006355 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K02490
            ProtClustDB:CLSK873695 RefSeq:NP_847737.1 RefSeq:YP_022251.1
            RefSeq:YP_031424.1 HSSP:P06628 ProteinModelPortal:Q81JW3 SMR:Q81JW3
            DNASU:1085276 EnsemblBacteria:EBBACT00000010293
            EnsemblBacteria:EBBACT00000016210 EnsemblBacteria:EBBACT00000023627
            GeneID:1085276 GeneID:2814845 GeneID:2853145 KEGG:ban:BA_5581
            KEGG:bar:GBAA_5581 KEGG:bat:BAS5185 OMA:EADGAMD
            BioCyc:BANT260799:GJAJ-5260-MONOMER
            BioCyc:BANT261594:GJ7F-5440-MONOMER Uniprot:Q81JW3
        Length = 122

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 31/111 (27%), Positives = 61/111 (54%)

Query:    19 RVLVVDDDPIWLRIL-EKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             ++L+VDD    +R+L  ++ +K  Y+  +      ALD+++  K+  D+V+ D+ +P MD
Sbjct:     4 KILIVDDQ-YGIRVLLHEVFQKEGYQTFQAANGFQALDIVK--KDNPDLVVLDMKIPGMD 60

Query:    78 GFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
             G ++ + V  ++  + VI+M+  G    + +    GA  +  KP  I E+R
Sbjct:    61 GIEILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIR 111


>TIGR_CMR|CPS_3245 [details] [associations]
            symbol:CPS_3245 "sigma 54-dependent DNA-binding response
            regulator" species:167879 "Colwellia psychrerythraea 34H"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
            EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
            HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
            PROSITE:PS00676 PROSITE:PS00688 RefSeq:YP_269935.1
            ProteinModelPortal:Q47Z35 STRING:Q47Z35 GeneID:3518970
            KEGG:cps:CPS_3245 PATRIC:21469467 OMA:YAKEENK
            ProtClustDB:CLSK749831 BioCyc:CPSY167879:GI48-3288-MONOMER
            Uniprot:Q47Z35
        Length = 488

 Score = 121 (47.7 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
 Identities = 31/104 (29%), Positives = 61/104 (58%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             R+L VDD+P  LR LE++ +K    +   +  + ALD++  ++   D+++SD +MP+MDG
Sbjct:     8 RILFVDDEPEILRSLERITKKLDAVILTASSGQDALDLI--NECPVDVIVSDFNMPNMDG 65

Query:    79 FKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGAC-NYLLKP 120
              +L EQV  +  +   ++++  G  + ++  + +G    +L KP
Sbjct:    66 NQLLEQVAKISPETVRMVLTGHGDMEMIVNLINNGHIWGFLQKP 109

 Score = 35 (17.4 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query:   142 ESDDSYSVNQGNWRTSN 158
             + + + SV+QGN  TS+
Sbjct:   422 QQNQNTSVHQGNHSTSS 438


>ASPGD|ASPL0000043398 [details] [associations]
            symbol:AN9048 species:162425 "Emericella nidulans"
            [GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA]
            [GO:0016020 "membrane" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0000160
            "phosphorelay signal transduction system" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] InterPro:IPR003018 InterPro:IPR001789
            InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
            InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
            PRINTS:PR00344 PROSITE:PS50110 SMART:SM00065 SMART:SM00387
            SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
            GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 EMBL:BN001307
            GO:GO:0005622 GO:GO:0023014 EMBL:AACD01000168 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
            Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
            SUPFAM:SSF47384 PROSITE:PS50109 RefSeq:XP_682317.1
            ProteinModelPortal:Q5ARN2 EnsemblFungi:CADANIAT00007805
            GeneID:2868194 KEGG:ani:AN9048.2 HOGENOM:HOG000178140 OMA:EVPIYSP
            OrthoDB:EOG415KNG Uniprot:Q5ARN2
        Length = 1109

 Score = 126 (49.4 bits), Expect = 9.2e-07, P = 9.2e-07
 Identities = 33/116 (28%), Positives = 58/116 (50%)

Query:    17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             G +VL+VDD+ I L++L +++ K  Y+ T      +A    + S N + +V+ D+ MP M
Sbjct:   986 GNKVLIVDDNEINLKVLARLMSKLGYQHTTATNGLVAFTKYKESPNSFSMVLMDISMPVM 1045

Query:    77 DGFKLHEQVGL---EMDLPVI-MMSVDGCTQDVMK--GVTHGACNYLLKPIRIKEL 126
             DG      +     E  L  + + +V G     M+   +  G   YL+KP+ + +L
Sbjct:  1046 DGIDATRNIRSYEWEKQLSSVKVFAVTGIGSAAMQHEALMAGVDEYLVKPLSLGQL 1101


>TIGR_CMR|BA_5275 [details] [associations]
            symbol:BA_5275 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
            EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
            GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HOGENOM:HOG000034819 HSSP:Q9WYN0 RefSeq:NP_847454.1
            RefSeq:YP_021932.1 ProteinModelPortal:Q81XG2 DNASU:1084753
            EnsemblBacteria:EBBACT00000010296 EnsemblBacteria:EBBACT00000014121
            GeneID:1084753 GeneID:2818753 KEGG:ban:BA_5275 KEGG:bar:GBAA_5275
            PATRIC:18788180 OMA:NANILQF ProtClustDB:CLSK917582
            BioCyc:BANT261594:GJ7F-5148-MONOMER Uniprot:Q81XG2
        Length = 221

 Score = 121 (47.7 bits), Expect = 9.3e-07, P = 9.3e-07
 Identities = 28/101 (27%), Positives = 54/101 (53%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +LV++D+P    ++ + L    + V         +  L   KN YD+V+ DV +PD+DG+
Sbjct:     4 ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGI--LLFQKNSYDLVLLDVMLPDIDGY 61

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
              + + +  + D+P+IM++     +  +KG   G  +Y+ KP
Sbjct:    62 SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKP 102


>TIGR_CMR|SO_4637 [details] [associations]
            symbol:SO_4637 "DNA-binding response regulator"
            species:211586 "Shewanella oneidensis MR-1" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
            EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
            RefSeq:NP_720153.1 ProteinModelPortal:Q8E8M6 GeneID:1172218
            KEGG:son:SO_4637 PATRIC:23528935 OMA:DCAYHGE ProtClustDB:CLSK907746
            Uniprot:Q8E8M6
        Length = 222

 Score = 121 (47.7 bits), Expect = 9.5e-07, P = 9.5e-07
 Identities = 30/114 (26%), Positives = 64/114 (56%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYE--VTKCN-RAEIALDMLRMSKNGYDIVISDVHMP 74
             ++VL+VDD+     ++E ++     E  +  C    E A+++++  +N YD++I D+ MP
Sbjct:     1 MKVLIVDDNH---DVIETIMDYLTLEGIIADCAYHGESAINLIQ--QNHYDVIIMDIMMP 55

Query:    75 DMDGFKLHEQVGLEM--DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
              +DG +  +++  E+  + P++ ++     QD +   T G  ++L KP  ++EL
Sbjct:    56 KLDGIRTVKKLREELFCNTPILFLTARDSLQDKIDSFTSGGDDFLNKPFAMEEL 109


>TIGR_CMR|SO_1946 [details] [associations]
            symbol:SO_1946 "transcriptional regulatory protein PhoP"
            species:211586 "Shewanella oneidensis MR-1" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
            GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07660
            HSSP:Q9WYN0 RefSeq:NP_717553.1 ProteinModelPortal:Q8EFM4
            GeneID:1169706 KEGG:son:SO_1946 PATRIC:23523521 OMA:PMEVTAF
            ProtClustDB:CLSK906514 Uniprot:Q8EFM4
        Length = 224

 Score = 121 (47.7 bits), Expect = 9.8e-07, P = 9.8e-07
 Identities = 36/114 (31%), Positives = 63/114 (55%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLR--MSKNGY--DIVISDVHM 73
             +R+LVV+DD     IL   L+  L ++   N+ ++AL           Y  D+ I D+ +
Sbjct:     1 MRILVVEDD----LILSHHLKVQLSDLG--NQVQVALTAKEGFFQATNYPIDVAIVDLGL 54

Query:    74 PDMDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             PD DG  L +Q+  E +  P+++++     QD ++G+  GA +YL+KP + +EL
Sbjct:    55 PDQDGISLIQQLREEGVKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEEL 108


>TIGR_CMR|DET_0300 [details] [associations]
            symbol:DET_0300 "DNA-binding response regulator"
            species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
            EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_181048.1
            ProteinModelPortal:Q3Z9Q1 STRING:Q3Z9Q1 GeneID:3230339
            KEGG:det:DET0300 PATRIC:21607673 OMA:GIKYGHW ProtClustDB:CLSK837537
            BioCyc:DETH243164:GJNF-300-MONOMER Uniprot:Q3Z9Q1
        Length = 225

 Score = 121 (47.7 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 33/144 (22%), Positives = 68/144 (47%)

Query:    18 LRVLVVDDDPIWLRILEK--MLRKCLYEVTKCNRAEIALDMLR-MSKNGYDIVISDVHMP 74
             +++L ++DD    +I+E   +L K  +   +     +    +  + K+ +DI I D+ +P
Sbjct:     1 MKLLFIEDDK---KIVESVFLLFKSFWPDMETKAVHLGKTGIEAVYKDDFDIAIIDLGLP 57

Query:    75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
             D+DG  + +Q+     LP+++++     Q++      GA +Y+ KP +  EL      V 
Sbjct:    58 DIDGINVLKQIRAFSSLPILILTARNNEQEIFTAFELGADDYITKPFQPLELI---ARVK 114

Query:   135 QQPKPFEESDDSYSVNQGNWRTSN 158
                K   ++     +  G+WR  N
Sbjct:   115 SLLKRLNKTSQDLGIKYGHWRFGN 138


>TIGR_CMR|SO_4477 [details] [associations]
            symbol:SO_4477 "transcriptional regulatory protein CpxR"
            species:211586 "Shewanella oneidensis MR-1" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
            GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07662
            HSSP:P08402 RefSeq:NP_719998.1 ProteinModelPortal:Q8E918
            GeneID:1172072 KEGG:son:SO_4477 PATRIC:23528605 OMA:TTQEIHA
            ProtClustDB:CLSK907666 Uniprot:Q8E918
        Length = 228

 Score = 121 (47.7 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 31/108 (28%), Positives = 61/108 (56%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             R+L++DDD     +L ++L    +++T     +  L+ L ++ + YD+++ DV +P ++G
Sbjct:     3 RILLIDDDLGLSELLGQLLELEGFKLTLAYDGKQGLE-LALATD-YDLILLDVMLPKLNG 60

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             F++   +      PV+M++  G   D + G+  GA +YL KP   +EL
Sbjct:    61 FEVLRALRQHKQTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDREL 108


>TIGR_CMR|CHY_2047 [details] [associations]
            symbol:CHY_2047 "DNA-binding response regulator"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_360866.1
            ProteinModelPortal:Q3AAG8 SMR:Q3AAG8 STRING:Q3AAG8 GeneID:3727851
            KEGG:chy:CHY_2047 PATRIC:21277175 KO:K07658 OMA:WGYEFSG
            ProtClustDB:CLSK2772343 BioCyc:CHYD246194:GJCN-2046-MONOMER
            Uniprot:Q3AAG8
        Length = 231

 Score = 121 (47.7 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 32/112 (28%), Positives = 64/112 (57%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +++LVVDD+   + +++  L +  Y+V +      AL++++  K   D+VI D+ +P M 
Sbjct:     1 MKILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVK--KELPDLVILDIMLPGMS 58

Query:    78 GFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G ++ + +       ++P+IM+S  G   D + G+  GA +Y++KP   +EL
Sbjct:    59 GLEVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPREL 110


>UNIPROTKB|E1WEB4 [details] [associations]
            symbol:cpxR "Two-component response regulatory protein"
            species:216597 "Salmonella enterica subsp. enterica serovar
            Typhimurium str. SL1344" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
            Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
            GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 OMA:YQTPVIM EMBL:FQ312003 GenomeReviews:FQ312003_GR
            RefSeq:YP_005183876.1 ProteinModelPortal:E1WEB4 IntAct:E1WEB4
            PRIDE:E1WEB4 GeneID:11767742 KEGG:sey:SL1344_4008 PATRIC:43194339
            Uniprot:E1WEB4
        Length = 232

 Score = 121 (47.7 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 33/108 (30%), Positives = 57/108 (52%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++L+VDDD     +L+++L    + V   +  E AL++L    +  D+++ DV MP  +G
Sbjct:     3 KILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELL---DDSIDLLLLDVMMPKKNG 59

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
                 + +      PVIM++  G   D + G+  GA +YL KP   +EL
Sbjct:    60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDREL 107


>UNIPROTKB|Q1D8M1 [details] [associations]
            symbol:MXAN_2785 "Sensory box histidine kinase/response
            regulator" species:246197 "Myxococcus xanthus DK 1622" [GO:0005515
            "protein binding" evidence=IPI] InterPro:IPR000014
            InterPro:IPR000700 InterPro:IPR001789 InterPro:IPR003594
            InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00072 Pfam:PF00512
            Pfam:PF00989 Pfam:PF02518 Pfam:PF08447 PRINTS:PR00344
            PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113 SMART:SM00091
            SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
            InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
            GO:GO:0035556 GO:GO:0005622 GO:GO:0023014 SMART:SM00086
            TIGRFAMs:TIGR00229 EMBL:CP000113 GenomeReviews:CP000113_GR
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
            Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
            SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642 InterPro:IPR013656
            Pfam:PF08448 RefSeq:YP_631002.1 ProteinModelPortal:Q1D8M1
            IntAct:Q1D8M1 STRING:Q1D8M1 GeneID:4101404 KEGG:mxa:MXAN_2785
            PATRIC:22648109 OMA:ATHLAVE BioCyc:MXAN246197:GIWU-2762-MONOMER
            Uniprot:Q1D8M1
        Length = 1077

 Score = 125 (49.1 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 37/129 (28%), Positives = 66/129 (51%)

Query:    16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
             A LRVLVVDD+     +L  ++  C   VT  + +E AL  LR +   +D+++SDV MP+
Sbjct:   948 ASLRVLVVDDEEDTRELLRSIIEACGGIVTTASSSEDALAELREAS--FDVLVSDVGMPE 1005

Query:    76 MDGFKLHEQV-GLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
              DG++   +V  L  +    +P + ++     +D  + +  G   ++ KPI   EL  + 
Sbjct:  1006 EDGYRFIARVRALPEEQGGGIPAVALTAYTRMEDRTRALLAGFTTHVPKPIEPVELMAVI 1065

Query:   131 QHVAQQPKP 139
               ++ +  P
Sbjct:  1066 ASMSNRGPP 1074


>DICTYBASE|DDB_G0284045 [details] [associations]
            symbol:dhkG "histidine kinase G" species:44689
            "Dictyostelium discoideum" [GO:0035556 "intracellular signal
            transduction" evidence=IEA] [GO:0023014 "signal transduction by
            phosphorylation" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016772
            "transferase activity, transferring phosphorus-containing groups"
            evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA]
            [GO:0016020 "membrane" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0006468 "protein phosphorylation"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0004713 "protein tyrosine kinase activity"
            evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000160
            "phosphorelay signal transduction system" evidence=IEA] [GO:0000156
            "phosphorelay response regulator activity" evidence=IEA]
            [GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
            [GO:0004673 "protein histidine kinase activity" evidence=IEA]
            [GO:0016740 "transferase activity" evidence=IEA] [GO:0016301
            "kinase activity" evidence=IEA] [GO:0016021 "integral to membrane"
            evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
            [GO:0004674 "protein serine/threonine kinase activity"
            evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
            InterPro:IPR003018 InterPro:IPR000719 InterPro:IPR001789
            InterPro:IPR003593 InterPro:IPR003594 InterPro:IPR003661
            InterPro:IPR004358 InterPro:IPR008266 InterPro:IPR009082
            InterPro:IPR011009 Pfam:PF00069 Pfam:PF00072 Pfam:PF00512
            Pfam:PF02518 PRINTS:PR00344 PROSITE:PS00107 PROSITE:PS00109
            PROSITE:PS50005 PROSITE:PS50011 PROSITE:PS50110 PROSITE:PS50293
            SMART:SM00065 SMART:SM00382 SMART:SM00387 SMART:SM00388
            SMART:SM00448 InterPro:IPR005467 dictyBase:DDB_G0284045
            GO:GO:0016021 GO:GO:0005524 GenomeReviews:CM000153_GR GO:GO:0006355
            GO:GO:0035556 SUPFAM:SSF56112 GO:GO:0004674 GO:GO:0005622
            EMBL:AAFI02000063 GO:GO:0004713 GO:GO:0023014 GO:GO:0017111
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928
            GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
            SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642
            EMBL:AF362369 RefSeq:XP_638728.1 ProteinModelPortal:Q54Q69
            EnsemblProtists:DDB0191388 GeneID:8624398 KEGG:ddi:DDB_G0284045
            OMA:ENGISSW Uniprot:Q54Q69
        Length = 3432

 Score = 130 (50.8 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 32/117 (27%), Positives = 64/117 (54%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG-YDIVISDVHMPDM 76
             L++L+V+D+ +   I+ KML K   +    + A   L+ ++ +KN  YD++I D+ MP M
Sbjct:  3304 LKILIVEDNEMNANIMFKMLAKLGIQCEP-HLALNGLEGVKKAKNEEYDLIIMDIQMPVM 3362

Query:    77 DGFK----LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
              G      + +  G +   P++ ++      ++ K +  G  +YL KP+++K+LR +
Sbjct:  3363 CGLTATSLIRKHEGTKKRTPIVAITASAMNGEMSKALAAGCDDYLSKPLQLKDLRYV 3419


>TIGR_CMR|GSU_1879 [details] [associations]
            symbol:GSU_1879 "DNA-binding response regulator"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
            RefSeq:NP_952928.1 ProteinModelPortal:Q74BZ8 GeneID:2688525
            KEGG:gsu:GSU1879 PATRIC:22026623 OMA:SHVESGE ProtClustDB:CLSK828616
            BioCyc:GSUL243231:GH27-1891-MONOMER Uniprot:Q74BZ8
        Length = 238

 Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 36/129 (27%), Positives = 69/129 (53%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L+V+D+    R +   L    Y V+     E AL+  R++ + + ++I DV +P +DGF
Sbjct:     8 ILLVEDEIHLARGICFNLEMEGYRVSHVESGEAALE--RLTYDRFALIILDVMLPGIDGF 65

Query:    80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE----LRNIWQHVA 134
              + E+V   +  +P+++++      D + G+  GA +YL KP  + E    +R + +  A
Sbjct:    66 TVCERVRATDARVPILILTARADDGDRITGLDRGADDYLTKPFNLNEFLLRVRGMLRRSA 125

Query:   135 -QQPKPFEE 142
               +P+P EE
Sbjct:   126 WYRPEPVEE 134


>UNIPROTKB|Q8EEQ6 [details] [associations]
            symbol:cheY "Chemotaxis signal transduction system response
            regulator CheY" species:211586 "Shewanella oneidensis MR-1"
            [GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
            "chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
            GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:KLANYKF
            HSSP:P06143 RefSeq:NP_717910.1 ProteinModelPortal:Q8EEQ6
            GeneID:1170042 KEGG:son:SO_2318 PATRIC:23524259 Uniprot:Q8EEQ6
        Length = 121

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 33/107 (30%), Positives = 54/107 (50%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++LVVDD      ++   LR   YEV      + AL  L   K   +++ISDV+MP+MDG
Sbjct:     3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKLNGDK--INLIISDVNMPNMDG 60

Query:    79 FKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
                 ++V         PVIM++ +     + +G   GA  +++KP +
Sbjct:    61 ISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKPFQ 107


>TIGR_CMR|GSU_1286 [details] [associations]
            symbol:GSU_1286 "chemotaxis protein CheY" species:243231
            "Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
            activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_952339.1
            ProteinModelPortal:Q74DN0 GeneID:2686542 KEGG:gsu:GSU1286
            PATRIC:22025343 OMA:CMDIMMP ProtClustDB:CLSK2522233
            BioCyc:GSUL243231:GH27-1254-MONOMER Uniprot:Q74DN0
        Length = 131

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 39/128 (30%), Positives = 69/128 (53%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG---YDIVISDVHMP 74
             ++ L+V+DD I  +I++++L   L E       E A+   R++ +    YD+V  D+ MP
Sbjct:     1 MKTLIVEDDFISRKIMKELLTS-LGECDIATDGEEAVQAFRLALDEHRPYDLVCMDIMMP 59

Query:    75 DMDGFKLHEQV-------GLE--MDLPVIMMSVDGCTQDVMKGVTHG-ACNYLLKPIR-- 122
             +MDG +  EQ+       GL    ++ VIM +     ++V++    G A +YL+KPI   
Sbjct:    60 NMDGHEALEQIREIERGMGLNGAQEVKVIMTTALDDPKNVVEAFYRGGATSYLVKPITKQ 119

Query:   123 --IKELRN 128
               +KE+R+
Sbjct:   120 RLMKEIRS 127


>TIGR_CMR|SO_2318 [details] [associations]
            symbol:SO_2318 "chemotaxis protein CheY" species:211586
            "Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
            activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
            GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
            OMA:KLANYKF HSSP:P06143 RefSeq:NP_717910.1
            ProteinModelPortal:Q8EEQ6 GeneID:1170042 KEGG:son:SO_2318
            PATRIC:23524259 Uniprot:Q8EEQ6
        Length = 121

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 33/107 (30%), Positives = 54/107 (50%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++LVVDD      ++   LR   YEV      + AL  L   K   +++ISDV+MP+MDG
Sbjct:     3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKLNGDK--INLIISDVNMPNMDG 60

Query:    79 FKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
                 ++V         PVIM++ +     + +G   GA  +++KP +
Sbjct:    61 ISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKPFQ 107


>TAIR|locus:2027237 [details] [associations]
            symbol:ARR15 "response regulator 15" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
            stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
            pathway" evidence=IGI;RCA;TAS] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007623
            "circadian rhythm" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
            GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC008263 EMBL:AC013258
            EMBL:AF305720 IPI:IPI00538856 RefSeq:NP_177627.1 UniGene:At.11589
            ProteinModelPortal:Q7G8V2 SMR:Q7G8V2 IntAct:Q7G8V2 STRING:Q7G8V2
            EnsemblPlants:AT1G74890.1 GeneID:843828 KEGG:ath:AT1G74890
            GeneFarm:4128 TAIR:At1g74890 HOGENOM:HOG000034820 InParanoid:Q7G8V2
            KO:K14492 OMA:KISACKV PhylomeDB:Q7G8V2 ProtClustDB:CLSN2914197
            Genevestigator:Q7G8V2 GermOnline:AT1G74890 Uniprot:Q7G8V2
        Length = 206

 Score = 120 (47.3 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 35/137 (25%), Positives = 73/137 (53%)

Query:     5 SSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS-KNG 63
             SSS++ S   P  L VL VDD  +  +++E++L+    +VT       AL  L +   NG
Sbjct:     7 SSSLSSSSS-PE-LHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNG 64

Query:    64 --------YDIVISDVHMPDMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHG 112
                      +++++D  MP + G++L +++       ++PV++MS +     + + +  G
Sbjct:    65 SSGLKDLKVNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEG 124

Query:   113 ACNYLLKPIRIKELRNI 129
             A  +LLKP+++ +++ +
Sbjct:   125 AEEFLLKPVKLADVKRL 141


>TIGR_CMR|SPO_1892 [details] [associations]
            symbol:SPO_1892 "C4-dicarboxylate transport
            transcriptional regulatory protein DctD" species:246200 "Ruegeria
            pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
            activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] [GO:0003677 "DNA binding"
            evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
            PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
            GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
            SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000058489 InterPro:IPR025662
            InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00688
            RefSeq:YP_167129.1 ProteinModelPortal:Q5LS76 DNASU:3193394
            GeneID:3193394 KEGG:sil:SPO1892 PATRIC:23377117 OMA:IDNTMRR
            ProtClustDB:CLSK933667 Uniprot:Q5LS76
        Length = 444

 Score = 123 (48.4 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 34/104 (32%), Positives = 56/104 (53%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +++ +VDD+    + + + L    Y+      AE AL +L     G  IVISD+ MP MD
Sbjct:     5 MKIAIVDDEQDMRQSISQWLALSGYDTETFASAEEALKVLGSEYPG--IVISDIKMPGMD 62

Query:    78 GFK-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
             G + L + +G +  LPVIM++  G     ++ +  GA ++L KP
Sbjct:    63 GMQFLKKLMGADSSLPVIMITGHGDVPMAVEAMRVGAFDFLEKP 106


>DICTYBASE|DDB_G0282377 [details] [associations]
            symbol:dhkM "histidine kinase M" species:44689
            "Dictyostelium discoideum" [GO:0048102 "autophagic cell death"
            evidence=IMP] [GO:0035556 "intracellular signal transduction"
            evidence=IEA] [GO:0016772 "transferase activity, transferring
            phosphorus-containing groups" evidence=IEA] [GO:0016310
            "phosphorylation" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA] [GO:0000156 "phosphorelay
            response regulator activity" evidence=IEA] [GO:0004673 "protein
            histidine kinase activity" evidence=IEA] [GO:0016740 "transferase
            activity" evidence=IEA] [GO:0016301 "kinase activity" evidence=IEA]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0016020
            "membrane" evidence=IEA] [GO:0007165 "signal transduction"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR004358
            Pfam:PF00072 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
            SMART:SM00387 SMART:SM00448 InterPro:IPR005467
            dictyBase:DDB_G0282377 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
            GO:GO:0035556 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
            GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HSSP:P39928 Gene3D:3.30.565.10 SUPFAM:SSF55874 PROSITE:PS50109
            eggNOG:COG0642 GO:GO:0004673 GO:GO:0048102 EMBL:AF362374
            RefSeq:XP_640034.1 ProteinModelPortal:Q54SK5
            EnsemblProtists:DDB0220020 GeneID:8623560 KEGG:ddi:DDB_G0282377
            OMA:NTSTINP Uniprot:Q54SK5
        Length = 2388

 Score = 127 (49.8 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 29/111 (26%), Positives = 59/111 (53%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             + +L+V+D+ +  +I   +LRK  + V      ++A++ ++ S + +D+++ D+HMP MD
Sbjct:  2261 VNILLVEDNLVNAKIAMTVLRKHNFRVELSKNGQLAMERIKQSHSSFDLILMDIHMPVMD 2320

Query:    78 GF-------KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
             G        K   + GL+  LP+I ++ D  T      +  G   ++ KP+
Sbjct:  2321 GITCSKLTRKFETEHGLK-HLPIIALTADATTGHKNLCLEAGCNEFMSKPL 2370


>TIGR_CMR|CPS_0397 [details] [associations]
            symbol:CPS_0397 "nitrogen regulation protein NR(I)"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006808 "regulation of
            nitrogen utilization" evidence=ISS] InterPro:IPR001789
            InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
            InterPro:IPR009057 InterPro:IPR010114 Pfam:PF00072 Pfam:PF00158
            Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
            SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
            GO:GO:0009399 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
            GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
            HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
            InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
            KO:K07712 GO:GO:0050906 TIGRFAMs:TIGR01818 RefSeq:YP_267155.1
            ProteinModelPortal:Q489V9 SMR:Q489V9 STRING:Q489V9 GeneID:3520592
            KEGG:cps:CPS_0397 PATRIC:21464159 OMA:KELAVEP
            BioCyc:CPSY167879:GI48-492-MONOMER Uniprot:Q489V9
        Length = 466

 Score = 123 (48.4 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 35/113 (30%), Positives = 59/113 (52%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY-DIVISDVHMPDMD 77
             +V +VDDD     +LEK        ++ C   E A ++L   ++G  +I+ISD+ MP++D
Sbjct:     5 QVWIVDDDSSIRWVLEKAFANA--NIS-CAAFESAENLLIALEHGQPEIIISDIRMPNID 61

Query:    78 GFKLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
             G +L +++  +   +PVI+M+        +     GA  YL KP  I E  N+
Sbjct:    62 GMELLKRLNKQHSHIPVIIMTAHSDLDSAVNAYQGGAFEYLPKPFDIDEAINL 114


>UNIPROTKB|P0AFB8 [details] [associations]
            symbol:glnG "NtrC transcriptional dual regulator"
            species:83333 "Escherichia coli K-12" [GO:0050906 "detection of
            stimulus involved in sensory perception" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0035556 "intracellular signal transduction"
            evidence=IEA] [GO:0009399 "nitrogen fixation" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000160 "phosphorelay signal transduction system" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
            InterPro:IPR003593 InterPro:IPR009057 InterPro:IPR010114
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0035556 GO:GO:0009399 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
            SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 EMBL:L19201 eggNOG:COG2204 HOGENOM:HOG000058489
            InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
            PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 EMBL:X05173
            EMBL:D16509 PIR:B30377 RefSeq:NP_418304.1 RefSeq:YP_491582.1
            ProteinModelPortal:P0AFB8 SMR:P0AFB8 IntAct:P0AFB8
            EnsemblBacteria:EBESCT00000001207 EnsemblBacteria:EBESCT00000001208
            EnsemblBacteria:EBESCT00000001209 EnsemblBacteria:EBESCT00000015316
            GeneID:12933634 GeneID:948361 KEGG:ecj:Y75_p3318 KEGG:eco:b3868
            PATRIC:32123239 EchoBASE:EB0380 EcoGene:EG10385 KO:K07712
            OMA:ARGQSNL ProtClustDB:PRK10923 BioCyc:EcoCyc:PROTEIN-NRI
            BioCyc:ECOL316407:JW3839-MONOMER BindingDB:P0AFB8 ChEMBL:CHEMBL3552
            Genevestigator:P0AFB8 GO:GO:0050906 TIGRFAMs:TIGR01818
            Uniprot:P0AFB8
        Length = 469

 Score = 123 (48.4 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 44/126 (34%), Positives = 61/126 (48%)

Query:    20 VLVVDDDPIWLRILEKMLRKC-LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             V VVDDD     +LE+ L    L   T  N AE+ L+ L  SK   D+++SD+ MP MDG
Sbjct:     6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEV-LEALA-SKTP-DVLLSDIRMPGMDG 62

Query:    79 FKLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE----LRNIWQHV 133
               L +Q+      LPVI+M+        +     GA +YL KP  I E    +     H 
Sbjct:    63 LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122

Query:   134 AQQPKP 139
              +Q +P
Sbjct:   123 QEQQQP 128


>UNIPROTKB|Q11156 [details] [associations]
            symbol:regX3 "Sensory transduction protein regX3"
            species:1773 "Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IDA] [GO:0009405 "pathogenesis"
            evidence=IDA] [GO:0019217 "regulation of fatty acid metabolic
            process" evidence=IDA] [GO:0019220 "regulation of phosphate
            metabolic process" evidence=IDA] [GO:0080134 "regulation of
            response to stress" evidence=IDA] InterPro:IPR001789
            InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
            PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0009405
            GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0019217 GO:GO:0006351
            EMBL:BX842573 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 SUPFAM:SSF46894
            GO:GO:0080134 GO:GO:0019220 EMBL:Y13628 PIR:F70744
            RefSeq:NP_215005.1 RefSeq:NP_334919.1 RefSeq:YP_006513821.1
            PDB:2OQR PDBsum:2OQR ProteinModelPortal:Q11156 SMR:Q11156
            PRIDE:Q11156 EnsemblBacteria:EBMYCT00000001447
            EnsemblBacteria:EBMYCT00000072066 GeneID:13318362 GeneID:887195
            GeneID:923874 KEGG:mtc:MT0510 KEGG:mtu:Rv0491 KEGG:mtv:RVBD_0491
            PATRIC:18122830 TubercuList:Rv0491 KO:K07776 OMA:DVDSHTV
            ProtClustDB:CLSK790554 EvolutionaryTrace:Q11156 Uniprot:Q11156
        Length = 227

 Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 34/107 (31%), Positives = 54/107 (50%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             VL+V+D+      L  +LRK  +E T       AL      + G DIV+ D+ +P M G 
Sbjct:     4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAAL--AEFDRAGADIVLLDLMLPGMSGT 61

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
              + +Q+     +PVIM++      D + G+  GA +Y+ KP   +EL
Sbjct:    62 DVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSAREL 108


>TIGR_CMR|SO_4647 [details] [associations]
            symbol:SO_4647 "DNA-binding response regulator"
            species:211586 "Shewanella oneidensis MR-1" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
            EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:P08402
            KO:K07660 ProtClustDB:CLSK907750 RefSeq:NP_720163.1
            ProteinModelPortal:Q8E8L6 GeneID:1172229 KEGG:son:SO_4647
            PATRIC:23528955 OMA:FEYFMLH Uniprot:Q8E8L6
        Length = 231

 Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 32/110 (29%), Positives = 56/110 (50%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +R+L+V+DD      L++ L    Y +   +  E  L   +  +  YD  I DV +P +D
Sbjct:     1 MRLLLVEDDVALQTNLKQHLLDAHYSIDVASDGEEGL--FQAVEYNYDAAIIDVGLPKLD 58

Query:    78 GFKLHEQVGL-EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G  L  ++   E   P+++++     QD ++G+  GA +YL KP   +EL
Sbjct:    59 GISLIRRIRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEEL 108


>UNIPROTKB|Q4KG39 [details] [associations]
            symbol:cheY "Chemotaxis protein CheY" species:220664
            "Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
            evidence=ISS] [GO:0035556 "intracellular signal transduction"
            evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
            SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
            EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
            HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
            ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
            KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
            BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
        Length = 123

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 28/114 (24%), Positives = 58/114 (50%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             +++L+VDD     RI++ +LR   +  T + +    A+ +L  +    D +++D +MP M
Sbjct:     1 MKILIVDDFSTMRRIIKNLLRDLGFTNTVEADDGTTAIPVL--NSGSIDFLVTDWNMPGM 58

Query:    77 DGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
              G  L   V  +     LPV+M++ +   + +++    G   Y++KP   + L+
Sbjct:    59 TGIDLLRHVRADEKLKHLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALK 112


>DICTYBASE|DDB_G0295835 [details] [associations]
            symbol:dhkI-2 "histidine kinase I" species:44689
            "Dictyostelium discoideum" [GO:0006928 "cellular component
            movement" evidence=IGI] [GO:0035556 "intracellular signal
            transduction" evidence=IEA] [GO:0023014 "signal transduction by
            phosphorylation" evidence=IEA] [GO:0016772 "transferase activity,
            transferring phosphorus-containing groups" evidence=IEA]
            [GO:0016310 "phosphorylation" evidence=IEA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0000160
            "phosphorelay signal transduction system" evidence=IEA] [GO:0000156
            "phosphorelay response regulator activity" evidence=IEA]
            [GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
            [GO:0004673 "protein histidine kinase activity" evidence=IEA]
            [GO:0016740 "transferase activity" evidence=IEA] [GO:0016301
            "kinase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR000700
            InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
            InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
            Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112
            PROSITE:PS50113 SMART:SM00091 SMART:SM00387 SMART:SM00388
            SMART:SM00448 InterPro:IPR005467 dictyBase:DDB_G0295835
            dictyBase:DDB_G0273475 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
            GO:GO:0035556 GenomeReviews:CM000151_GR GO:GO:0006928 GO:GO:0005622
            GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HSSP:P39928 eggNOG:COG0784 GO:GO:0000155 Gene3D:1.10.287.130
            Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
            EMBL:AAFI02000010 EMBL:AF362371 RefSeq:XP_644590.1
            ProteinModelPortal:Q86AT9 PRIDE:Q86AT9 EnsemblProtists:DDB0231984
            GeneID:8618954 KEGG:ddi:DDB_G0273475 OMA:HRISSIC
            ProtClustDB:CLSZ2729225 Uniprot:Q86AT9
        Length = 1736

 Score = 124 (48.7 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 42/163 (25%), Positives = 78/163 (47%)

Query:     4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
             +S  + +S       +VLV +D+ +  ++++ +L K  +++T     + ALD    SKN 
Sbjct:  1536 SSGGIEISGSQMIPQKVLVAEDNTMNQKLIKTLLTKRGFDITIAKDGKQALDFYHESKNK 1595

Query:    64 ---YDIVISDVHMPDMDGFKLHEQVG-LEMD----LPVIMMSVDGCTQDVMKGVTHGACN 115
                YD ++ D+ MP + G +    +  +E +    +P+I ++      D  K +  G  +
Sbjct:  1596 SILYDCILMDIQMPILSGLEATCAIREIEANEGGHIPIIAVTAHAMKGDKEKFLESGVDD 1655

Query:   116 YLLKPIRIKELRNIWQHVAQQPKPFEESDDSYSVNQGNWRTSN 158
             Y+ KPI  K L  +     Q  K  EE+  S ++N+ N  T N
Sbjct:  1656 YVTKPINPKLLYEVIN--TQICKYIEENRSSSTINE-NKNTIN 1695


>DICTYBASE|DDB_G0273475 [details] [associations]
            symbol:dhkI-1 "histidine kinase I" species:44689
            "Dictyostelium discoideum" [GO:0006928 "cellular component
            movement" evidence=IGI] [GO:0035556 "intracellular signal
            transduction" evidence=IEA] [GO:0023014 "signal transduction by
            phosphorylation" evidence=IEA] [GO:0016772 "transferase activity,
            transferring phosphorus-containing groups" evidence=IEA]
            [GO:0016310 "phosphorylation" evidence=IEA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0000160
            "phosphorelay signal transduction system" evidence=IEA] [GO:0000156
            "phosphorelay response regulator activity" evidence=IEA]
            [GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
            [GO:0004673 "protein histidine kinase activity" evidence=IEA]
            [GO:0016740 "transferase activity" evidence=IEA] [GO:0016301
            "kinase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR000700
            InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
            InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
            Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112
            PROSITE:PS50113 SMART:SM00091 SMART:SM00387 SMART:SM00388
            SMART:SM00448 InterPro:IPR005467 dictyBase:DDB_G0295835
            dictyBase:DDB_G0273475 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
            GO:GO:0035556 GenomeReviews:CM000151_GR GO:GO:0006928 GO:GO:0005622
            GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HSSP:P39928 eggNOG:COG0784 GO:GO:0000155 Gene3D:1.10.287.130
            Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
            EMBL:AAFI02000010 EMBL:AF362371 RefSeq:XP_644590.1
            ProteinModelPortal:Q86AT9 PRIDE:Q86AT9 EnsemblProtists:DDB0231984
            GeneID:8618954 KEGG:ddi:DDB_G0273475 OMA:HRISSIC
            ProtClustDB:CLSZ2729225 Uniprot:Q86AT9
        Length = 1736

 Score = 124 (48.7 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 42/163 (25%), Positives = 78/163 (47%)

Query:     4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
             +S  + +S       +VLV +D+ +  ++++ +L K  +++T     + ALD    SKN 
Sbjct:  1536 SSGGIEISGSQMIPQKVLVAEDNTMNQKLIKTLLTKRGFDITIAKDGKQALDFYHESKNK 1595

Query:    64 ---YDIVISDVHMPDMDGFKLHEQVG-LEMD----LPVIMMSVDGCTQDVMKGVTHGACN 115
                YD ++ D+ MP + G +    +  +E +    +P+I ++      D  K +  G  +
Sbjct:  1596 SILYDCILMDIQMPILSGLEATCAIREIEANEGGHIPIIAVTAHAMKGDKEKFLESGVDD 1655

Query:   116 YLLKPIRIKELRNIWQHVAQQPKPFEESDDSYSVNQGNWRTSN 158
             Y+ KPI  K L  +     Q  K  EE+  S ++N+ N  T N
Sbjct:  1656 YVTKPINPKLLYEVIN--TQICKYIEENRSSSTINE-NKNTIN 1695


>TIGR_CMR|SO_0859 [details] [associations]
            symbol:SO_0859 "sensory box histidine kinase/response
            regulator" species:211586 "Shewanella oneidensis MR-1" [GO:0000155
            "phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR000014 InterPro:IPR000700 InterPro:IPR001789
            InterPro:IPR003594 InterPro:IPR003660 InterPro:IPR003661
            InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
            InterPro:IPR013655 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
            Pfam:PF01627 Pfam:PF02518 Pfam:PF08447 PRINTS:PR00344
            PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50885
            PROSITE:PS50894 SMART:SM00073 SMART:SM00091 SMART:SM00304
            SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
            InterPro:IPR001610 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
            GO:GO:0035556 GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR
            GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
            Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
            SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
            RefSeq:NP_716490.1 PDB:3LIC PDBsum:3LIC ProteinModelPortal:Q8EII0
            DNASU:1168706 GeneID:1168706 KEGG:son:SO_0859 PATRIC:23521379
            HOGENOM:HOG000296662 OMA:IAKPIEV ProtClustDB:CLSK905976
            EvolutionaryTrace:Q8EII0 Uniprot:Q8EII0
        Length = 1765

 Score = 124 (48.7 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 35/138 (25%), Positives = 69/138 (50%)

Query:    17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             G R+L+V+D+ + L +  + L +    ++     +IALD  ++++  +D+V+ D  MP M
Sbjct:  1423 GKRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALD--KLAQQSFDLVLMDCQMPVM 1480

Query:    77 DGFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
             DG++  + +    +L   PVI M+ +    D    +  G  +++ KPI +  L       
Sbjct:  1481 DGYQATKAIRQRPELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKY 1540

Query:   134 AQQPKPFEESDDSYSVNQ 151
                P P  E+ + + VN+
Sbjct:  1541 LGAPVPSLENAE-FVVNE 1557


>TIGR_CMR|GSU_1129 [details] [associations]
            symbol:GSU_1129 "sigma-54 dependent DNA-binding response
            regulator" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
            InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
            PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
            RefSeq:NP_952182.1 ProteinModelPortal:Q74E35 GeneID:2687644
            KEGG:gsu:GSU1129 PATRIC:22025020 OMA:YEFANII ProtClustDB:CLSK828199
            BioCyc:GSUL243231:GH27-1139-MONOMER Uniprot:Q74E35
        Length = 453

 Score = 119 (46.9 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
 Identities = 29/112 (25%), Positives = 58/112 (51%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++L++DD+      L  +L+   + V        A   L  +++ +DIVI+D+ +PD  G
Sbjct:     6 KILLIDDEETGREALTLLLKAAGHAVKSAGAGSEAFQTL--TRDTFDIVITDLFLPDASG 63

Query:    79 FKLHEQVGLEMDLP-VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
               + ++V  +  L  VI+++     +  +K +  GA +Y+ KP+   EL+ I
Sbjct:    64 IDILKKVKEDAPLTEVILITGHASAETAVKAMKEGAFDYITKPLNFDELKII 115

 Score = 35 (17.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query:   120 PIRIKELRNIWQHVA 134
             P  ++EL N+ + VA
Sbjct:   359 PGNVRELENVMERVA 373


>UNIPROTKB|P06628 [details] [associations]
            symbol:spo0F "Sporulation initiation phosphotransferase F"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
            Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0005737
            GO:GO:0006355 GO:GO:0035556 GO:GO:0046872 GO:GO:0030435
            GO:GO:0016301 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
            HOGENOM:HOG000034820 EMBL:Z49782 EMBL:X03497 EMBL:M11081
            EMBL:M22039 PIR:A24737 RefSeq:NP_391594.1 PDB:1F51 PDB:1FSP
            PDB:1NAT PDB:1PEY PDB:1PUX PDB:1SRR PDB:2FSP PDB:2FTK PDB:2JVI
            PDB:2JVJ PDB:2JVK PDB:3Q15 PDBsum:1F51 PDBsum:1FSP PDBsum:1NAT
            PDBsum:1PEY PDBsum:1PUX PDBsum:1SRR PDBsum:2FSP PDBsum:2FTK
            PDBsum:2JVI PDBsum:2JVJ PDBsum:2JVK PDBsum:3Q15
            ProteinModelPortal:P06628 SMR:P06628 DIP:DIP-58965N IntAct:P06628
            EnsemblBacteria:EBBACT00000000330 GeneID:937041 KEGG:bsu:BSU37130
            PATRIC:18979462 GenoList:BSU37130 KO:K02490 OMA:IRVIIMT
            ProtClustDB:CLSK873695 BioCyc:BSUB:BSU37130-MONOMER
            BindingDB:P06628 ChEMBL:CHEMBL3857 EvolutionaryTrace:P06628
            Uniprot:P06628
        Length = 124

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 31/112 (27%), Positives = 62/112 (55%)

Query:    19 RVLVVDDDPIWLRIL-EKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             ++L+VDD    +RIL  ++  K  Y+  +      ALD++  +K   D+V+ D+ +P MD
Sbjct:     5 KILIVDDQ-YGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMD 61

Query:    78 GFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
             G ++ +++  ++ ++ VI+M+  G    + +    GA  +  KP  I E+R+
Sbjct:    62 GIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113


>UNIPROTKB|Q52884 [details] [associations]
            symbol:cheY2 "CheY2" species:382 "Sinorhizobium meliloti"
            [GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
            Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
            GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:U13166
            GenomeReviews:AL591688_GR PIR:S61838 PDB:1P6Q PDB:1P6U PDBsum:1P6Q
            PDBsum:1P6U ProteinModelPortal:Q52884 SMR:Q52884 IntAct:Q52884
            PATRIC:23630501 ProtClustDB:CLSK800134 EvolutionaryTrace:Q52884
            Uniprot:Q52884
        Length = 129

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 33/114 (28%), Positives = 57/114 (50%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLY-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
             ++VL+VDD      +L   L++  + ++T     E  + +  M++N + +VISD +MP M
Sbjct:     7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKI--MAQNPHHLVISDFNMPKM 64

Query:    77 DGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
             DG  L + V           I+++  G    V K    GA N L KP  I++++
Sbjct:    65 DGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMK 118


>TIGR_CMR|GSU_1231 [details] [associations]
            symbol:GSU_1231 "response regulator" species:243231
            "Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
            GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_952284.1
            ProteinModelPortal:Q74DT4 GeneID:2686689 KEGG:gsu:GSU1231
            PATRIC:22025231 HOGENOM:HOG000135980 OMA:MGTCLAV
            ProtClustDB:CLSK828254 BioCyc:GSUL243231:GH27-1243-MONOMER
            Uniprot:Q74DT4
        Length = 131

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 28/85 (32%), Positives = 48/85 (56%)

Query:    20 VLVVDDDPIWLRILEKMLRKCL--YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +L+VDDD  + + L+K +R+C     V  C+    AL ++R  K   D+++ D  MP MD
Sbjct:     4 ILIVDDDRSFSQFLKKYIRQCFPALRVHTCSDPVRALGLIR--KGDVDLLLVDYEMPVMD 61

Query:    78 GFKLHE---QVGLEMDLPVIMMSVD 99
             G K+     QVG++ +  +++ S D
Sbjct:    62 GEKVVRYACQVGMDRNRIIVLSSRD 86


>TIGR_CMR|DET_1058 [details] [associations]
            symbol:DET_1058 "DNA-binding response regulator"
            species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GO:GO:0005622 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_181773.1
            ProteinModelPortal:Q3Z7M6 STRING:Q3Z7M6 GeneID:3229632
            KEGG:det:DET1058 PATRIC:21609161 OMA:ISGWDVC ProtClustDB:CLSK837116
            BioCyc:DETH243164:GJNF-1059-MONOMER Uniprot:Q3Z7M6
        Length = 227

 Score = 119 (46.9 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 29/108 (26%), Positives = 58/108 (53%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             ++L+ DD+     IL+  L +  ++V+     + AL   R  +   D++I D+ +P++ G
Sbjct:     4 KILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFR--EENPDLIILDLMLPEISG 61

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             + +  ++  E  +P+IM++      D + G+  GA +Y+ KP   KEL
Sbjct:    62 WDVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKEL 109


>UNIPROTKB|Q9KNN9 [details] [associations]
            symbol:VC_2692 "Transcriptional regulator CpxR"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0035556 GO:GO:0003677
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
            KO:K07662 HSSP:P08402 PIR:B82046 RefSeq:NP_232320.1
            ProteinModelPortal:Q9KNN9 DNASU:2615520 GeneID:2615520
            KEGG:vch:VC2692 PATRIC:20084402 OMA:HEYGDIK ProtClustDB:CLSK874884
            Uniprot:Q9KNN9
        Length = 228

 Score = 119 (46.9 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 30/107 (28%), Positives = 60/107 (56%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L++DDD     +L ++L+   +E+++ N  E  L  +    +  D+++ DV MP ++G 
Sbjct:     4 ILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAV---SDEIDLILLDVMMPKLNGM 60

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             +  +++  +   PV+M++  G   D + G+  GA +YL KP   +EL
Sbjct:    61 ETLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDREL 107


>TIGR_CMR|VC_2692 [details] [associations]
            symbol:VC_2692 "transcriptional regulator CpxR" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0035556 GO:GO:0003677
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
            KO:K07662 HSSP:P08402 PIR:B82046 RefSeq:NP_232320.1
            ProteinModelPortal:Q9KNN9 DNASU:2615520 GeneID:2615520
            KEGG:vch:VC2692 PATRIC:20084402 OMA:HEYGDIK ProtClustDB:CLSK874884
            Uniprot:Q9KNN9
        Length = 228

 Score = 119 (46.9 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 30/107 (28%), Positives = 60/107 (56%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L++DDD     +L ++L+   +E+++ N  E  L  +    +  D+++ DV MP ++G 
Sbjct:     4 ILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAV---SDEIDLILLDVMMPKLNGM 60

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             +  +++  +   PV+M++  G   D + G+  GA +YL KP   +EL
Sbjct:    61 ETLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDREL 107


>UNIPROTKB|O06143 [details] [associations]
            symbol:pdtaR "Probable transcriptional regulatory protein
            pdtaR" species:1773 "Mycobacterium tuberculosis" [GO:0000160
            "phosphorelay signal transduction system" evidence=IDA] [GO:0005618
            "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR001789
            InterPro:IPR005561 Pfam:PF00072 Pfam:PF03861 PROSITE:PS50110
            PROSITE:PS50921 SMART:SM00448 SMART:SM01012 GO:GO:0005886
            GO:GO:0040007 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR GO:GO:0035556 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 EMBL:BX842577 GO:GO:0003723
            GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            GO:GO:0000160 GO:GO:0031564 PIR:H70558 RefSeq:NP_216142.1
            RefSeq:NP_336118.1 RefSeq:YP_006515015.1 PDB:1S8N PDB:1SD5
            PDBsum:1S8N PDBsum:1SD5 ProteinModelPortal:O06143 SMR:O06143
            PRIDE:O06143 EnsemblBacteria:EBMYCT00000001621
            EnsemblBacteria:EBMYCT00000071028 GeneID:13316405 GeneID:885080
            GeneID:924202 KEGG:mtc:MT1662 KEGG:mtu:Rv1626 KEGG:mtv:RVBD_1626
            PATRIC:18125418 TubercuList:Rv1626 eggNOG:COG3707
            HOGENOM:HOG000034822 KO:K07183 OMA:MDRRLTM ProtClustDB:CLSK791290
            EvolutionaryTrace:O06143 InterPro:IPR008327 PIRSF:PIRSF036382
            Uniprot:O06143
        Length = 205

 Score = 118 (46.6 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 31/109 (28%), Positives = 56/109 (51%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             RVL+ +D+ +    L +MLR+  YE+  +    + A+++  + K   D+VI DV MP  D
Sbjct:    15 RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKP--DLVIMDVKMPRRD 72

Query:    78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G     ++  +   P+++++       V +    GA  YL+KP  I +L
Sbjct:    73 GIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDL 121


>TIGR_CMR|CHY_0092 [details] [associations]
            symbol:CHY_0092 "DNA-binding response regulator"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
            Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
            GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
            GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_358964.1
            ProteinModelPortal:Q3AFX0 STRING:Q3AFX0 GeneID:3728314
            KEGG:chy:CHY_0092 PATRIC:21273381 OMA:KLANKEF
            BioCyc:CHYD246194:GJCN-92-MONOMER Uniprot:Q3AFX0
        Length = 234

 Score = 119 (46.9 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 35/122 (28%), Positives = 67/122 (54%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALD----MLRMSKNGYDIVISDVHMP 74
             +VL+++DD    R + ++ R  L EV      EIA++    + +  +  YD+++ D+ +P
Sbjct:     3 KVLIIEDD----RSIAELERDYL-EVAGF-LVEIAVNGDQGLKKALEEEYDLILLDLMLP 56

Query:    75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL-RNIWQHV 133
              +DGF++  +V  E D PV+++S      D ++G+  GA +Y+ KP    EL   +  H+
Sbjct:    57 GIDGFEVLRKVRAEKDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query:   134 AQ 135
              +
Sbjct:   117 GR 118


>UNIPROTKB|Q45976 [details] [associations]
            symbol:divK "Cell division response regulator DivK"
            species:155892 "Caulobacter vibrioides" [GO:0005515 "protein
            binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0051301 GO:GO:0006355
            GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 EMBL:U13765 PIR:S58671 HSSP:Q9A5I4
            ProteinModelPortal:Q45976 SMR:Q45976 DIP:DIP-46001N IntAct:Q45976
            Uniprot:Q45976
        Length = 125

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 33/125 (26%), Positives = 63/125 (50%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             +VL+V+D+ + +++   +L    YE  +      AL + R +K   D+++ D+ +P++ G
Sbjct:     4 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKP--DLILMDIQLPEISG 61

Query:    79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKG----VTHGACN-YLLKPIRIKE-LRNIWQH 132
              ++ + +  + DL  I   V   T   MKG    +  G C  Y+ KPI +   L  I + 
Sbjct:    62 LEVTKWLKEDDDLAHI--PVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRL 119

Query:   133 VAQQP 137
             + +QP
Sbjct:   120 LERQP 124


>UNIPROTKB|Q9KNL8 [details] [associations]
            symbol:VC_2714 "Transcriptional regulator OmpR"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 KO:K07659 ProtClustDB:PRK09468 OMA:AANSEQM
            HSSP:P03025 PIR:C82042 RefSeq:NP_232341.1 ProteinModelPortal:Q9KNL8
            SMR:Q9KNL8 DNASU:2615542 GeneID:2615542 KEGG:vch:VC2714
            PATRIC:20084446 Uniprot:Q9KNL8
        Length = 240

 Score = 119 (46.9 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 31/109 (28%), Positives = 60/109 (55%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             +VLVVDDD     +LE+ L +  ++V      E  +D L +++  + +++ D+ +P  DG
Sbjct:     6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGE-QMDRL-LTRENFHLMVLDLMLPGEDG 63

Query:    79 FKLHEQVGLEMDL-PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
               +  ++    ++ P++M++  G   D + G+  GA +YL KP   +EL
Sbjct:    64 LSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPREL 112


>TIGR_CMR|VC_2714 [details] [associations]
            symbol:VC_2714 "transcriptional regulator OmpR,"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 KO:K07659 ProtClustDB:PRK09468 OMA:AANSEQM
            HSSP:P03025 PIR:C82042 RefSeq:NP_232341.1 ProteinModelPortal:Q9KNL8
            SMR:Q9KNL8 DNASU:2615542 GeneID:2615542 KEGG:vch:VC2714
            PATRIC:20084446 Uniprot:Q9KNL8
        Length = 240

 Score = 119 (46.9 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 31/109 (28%), Positives = 60/109 (55%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             +VLVVDDD     +LE+ L +  ++V      E  +D L +++  + +++ D+ +P  DG
Sbjct:     6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGE-QMDRL-LTRENFHLMVLDLMLPGEDG 63

Query:    79 FKLHEQVGLEMDL-PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
               +  ++    ++ P++M++  G   D + G+  GA +YL KP   +EL
Sbjct:    64 LSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPREL 112


>TIGR_CMR|SPO_2629 [details] [associations]
            symbol:SPO_2629 "C4-dicarboxylate transport
            transcriptional regulatory protein" species:246200 "Ruegeria
            pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
            activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
            transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
            Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
            SMART:SM00448 GO:GO:0005524 GO:GO:0035556 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489 KO:K10126
            RefSeq:YP_167839.1 ProteinModelPortal:Q5LQ67 DNASU:3194353
            GeneID:3194353 KEGG:sil:SPO2629 PATRIC:23378667 OMA:TFYDKLA
            ProtClustDB:CLSK751600 Uniprot:Q5LQ67
        Length = 409

 Score = 121 (47.7 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 33/109 (30%), Positives = 55/109 (50%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             +VL+VDDD      L + L    Y V        A D +  + +G  +++SD+ MP  DG
Sbjct:     4 KVLLVDDDAAVREALGQTLDLADYAVQTAGSFVAAKDHITATFDG--VIVSDIRMPGRDG 61

Query:    79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             F L      ++ DLPVI+++ +G     ++ +  GA ++L KP    +L
Sbjct:    62 FHLLSYAQDIDPDLPVILLTGEGDIPMAVRAMGDGAFDFLEKPCAAADL 110


>TIGR_CMR|GSU_2313 [details] [associations]
            symbol:GSU_2313 "response regulator" species:243231
            "Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001054
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            Pfam:PF00990 GO:GO:0006355 GO:GO:0005622 EMBL:AE017180
            GenomeReviews:AE017180_GR SUPFAM:SSF55073 GO:GO:0016849
            GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
            PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HSSP:P08402 HOGENOM:HOG000167205 RefSeq:NP_953362.1
            ProteinModelPortal:Q74AN9 GeneID:2687341 KEGG:gsu:GSU2313
            PATRIC:22027481 OMA:ARYRYLC ProtClustDB:CLSK763191
            BioCyc:GSUL243231:GH27-2319-MONOMER Uniprot:Q74AN9
        Length = 301

 Score = 120 (47.3 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 33/113 (29%), Positives = 61/113 (53%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +R+L+ DDD     +L  ++++  Y+V +      A + L+ S +   + + D  MP MD
Sbjct:     1 MRILIADDDVTSRTMLTGLMKRWGYDVVEAIDGAQAWEELQKS-DAPKLAVLDWVMPVMD 59

Query:    78 GFKLHEQVGLEM--DLP-VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
             G ++  QV       LP +++++    T DV++G+  GA +Y+ KP  + ELR
Sbjct:    60 GVEVIRQVRARSAEHLPYILLLTAKNGTDDVIRGLDAGADDYVGKPFSLGELR 112


>UNIPROTKB|Q9KS16 [details] [associations]
            symbol:VC_1445 "Sensor histidine kinase/response regulator"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
            evidence=ISS] [GO:0035556 "intracellular signal transduction"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
            InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
            Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
            PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
            InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
            Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
            SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198 RefSeq:NP_231088.1
            ProteinModelPortal:Q9KS16 DNASU:2614077 GeneID:2614077
            KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS ProtClustDB:CLSK874379
            Uniprot:Q9KS16
        Length = 572

 Score = 122 (48.0 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 29/111 (26%), Positives = 59/111 (53%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +LVV+D      +++ +L K  Y+VT       A+++L  + + +D+V+ D+ MP MDG 
Sbjct:   456 ILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKN-HVFDLVLMDISMPIMDGI 514

Query:    80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
                + +    +++P+I ++      D    +  G  + +LKPIR K++  +
Sbjct:   515 AATKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEV 565


>TIGR_CMR|VC_1445 [details] [associations]
            symbol:VC_1445 "sensor histidine kinase/response regulator"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
            "phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
            InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
            Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
            SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
            GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
            SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198
            RefSeq:NP_231088.1 ProteinModelPortal:Q9KS16 DNASU:2614077
            GeneID:2614077 KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS
            ProtClustDB:CLSK874379 Uniprot:Q9KS16
        Length = 572

 Score = 122 (48.0 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 29/111 (26%), Positives = 59/111 (53%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +LVV+D      +++ +L K  Y+VT       A+++L  + + +D+V+ D+ MP MDG 
Sbjct:   456 ILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKN-HVFDLVLMDISMPIMDGI 514

Query:    80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
                + +    +++P+I ++      D    +  G  + +LKPIR K++  +
Sbjct:   515 AATKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEV 565


>TIGR_CMR|CPS_1865 [details] [associations]
            symbol:CPS_1865 "DNA-binding response regulator"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
            InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
            SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
            GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
            EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
            HOGENOM:HOG000034815 RefSeq:YP_268595.1 ProteinModelPortal:Q484C0
            STRING:Q484C0 GeneID:3522541 KEGG:cps:CPS_1865 PATRIC:21466873
            OMA:DINTHQV BioCyc:CPSY167879:GI48-1935-MONOMER Uniprot:Q484C0
        Length = 223

 Score = 118 (46.6 bits), Expect = 4.4e-06, P = 4.4e-06
 Identities = 25/110 (22%), Positives = 58/110 (52%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +++L+V+D      ++     +  +++       + L + +  K  +D +I D+ +P +D
Sbjct:     1 MKILLVEDCQSVAEVIFDYFEESDFDLDYAATGNLGLSLAQSQK--FDCIILDIMLPGLD 58

Query:    78 GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             G  L +Q+  E  + P+IM++      D++ G+  GA +Y++KP  ++ L
Sbjct:    59 GISLCQQLRAEGNNTPIIMLTARDTNDDMLLGLRQGADDYIVKPFNLELL 108


>TIGR_CMR|BA_3661 [details] [associations]
            symbol:BA_3661 "DNA-binding response regulator"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
            Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
            SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
            RefSeq:NP_845926.1 RefSeq:YP_020295.1 RefSeq:YP_029652.1
            ProteinModelPortal:Q81Y94 DNASU:1085996
            EnsemblBacteria:EBBACT00000012587 EnsemblBacteria:EBBACT00000017515
            EnsemblBacteria:EBBACT00000021805 GeneID:1085996 GeneID:2816214
            GeneID:2848549 KEGG:ban:BA_3661 KEGG:bar:GBAA_3661 KEGG:bat:BAS3396
            OMA:ENTMSLA ProtClustDB:CLSK917123
            BioCyc:BANT260799:GJAJ-3457-MONOMER
            BioCyc:BANT261594:GJ7F-3567-MONOMER Uniprot:Q81Y94
        Length = 225

 Score = 118 (46.6 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 28/107 (26%), Positives = 57/107 (53%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             VL+V+D+     I+    R   +EV +    + AL++   +++  D+++ D+ +P++DG+
Sbjct:     5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF--AEHEIDLIMLDIMLPEIDGW 62

Query:    80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
              +  ++  E  +P+IM++      D + G   GA  Y+ KP   K L
Sbjct:    63 SVCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVL 109


>UNIPROTKB|Q9KSB1 [details] [associations]
            symbol:VC_1348 "Response regulator" species:243277 "Vibrio
            cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
            response regulator activity" evidence=ISS] [GO:0000160
            "phosphorelay signal transduction system" evidence=ISS] [GO:0035556
            "intracellular signal transduction" evidence=ISS]
            InterPro:IPR001789 InterPro:IPR003607 InterPro:IPR006674
            Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 SMART:SM00471
            GO:GO:0006355 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0008152 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 GO:GO:0008081 Gene3D:1.10.3210.10 HSSP:Q9A5I4
            KO:K07814 PIR:G82211 RefSeq:NP_230992.1 ProteinModelPortal:Q9KSB1
            DNASU:2614802 GeneID:2614802 KEGG:vch:VC1348 PATRIC:20081772
            OMA:DNPRSRH ProtClustDB:CLSK794088 Uniprot:Q9KSB1
        Length = 441

 Score = 121 (47.7 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 30/112 (26%), Positives = 60/112 (53%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L+VDD P  +  + + L +  Y +      ++AL++L  ++   D+V+ D+ MP+M G+
Sbjct:    73 ILIVDDSPDNIAFMSQGLAQ-YYRIKAARSGKVALEIL--AQYPIDLVLLDIVMPEMSGY 129

Query:    80 KLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
             ++  Q+        +PVI ++     +D   G   GA +Y+ KP+ I  L++
Sbjct:   130 EVINQIKHNPHTEHIPVIFLTGKSNPEDEQLGFELGAVDYVFKPVSIPLLKS 181


>TIGR_CMR|VC_1348 [details] [associations]
            symbol:VC_1348 "response regulator" species:686 "Vibrio
            cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789
            InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110
            SMART:SM00448 SMART:SM00471 GO:GO:0006355 GO:GO:0046872
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008152 GO:GO:0005622
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
            Gene3D:1.10.3210.10 HSSP:Q9A5I4 KO:K07814 PIR:G82211
            RefSeq:NP_230992.1 ProteinModelPortal:Q9KSB1 DNASU:2614802
            GeneID:2614802 KEGG:vch:VC1348 PATRIC:20081772 OMA:DNPRSRH
            ProtClustDB:CLSK794088 Uniprot:Q9KSB1
        Length = 441

 Score = 121 (47.7 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 30/112 (26%), Positives = 60/112 (53%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L+VDD P  +  + + L +  Y +      ++AL++L  ++   D+V+ D+ MP+M G+
Sbjct:    73 ILIVDDSPDNIAFMSQGLAQ-YYRIKAARSGKVALEIL--AQYPIDLVLLDIVMPEMSGY 129

Query:    80 KLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
             ++  Q+        +PVI ++     +D   G   GA +Y+ KP+ I  L++
Sbjct:   130 EVINQIKHNPHTEHIPVIFLTGKSNPEDEQLGFELGAVDYVFKPVSIPLLKS 181


>UNIPROTKB|Q0BZW4 [details] [associations]
            symbol:pleD "Response regulator PleD" species:228405
            "Hyphomonas neptunium ATCC 15444" [GO:0004871 "signal transducer
            activity" evidence=ISS] [GO:0007165 "signal transduction"
            evidence=ISS] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
            GO:GO:0005622 GO:GO:0004871 SUPFAM:SSF55073 GO:GO:0016849
            GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
            PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            eggNOG:COG3706 EMBL:CP000158 GenomeReviews:CP000158_GR KO:K02488
            HOGENOM:HOG000167204 RefSeq:YP_760979.1 ProteinModelPortal:Q0BZW4
            STRING:Q0BZW4 GeneID:4287816 KEGG:hne:HNE_2284 PATRIC:32217411
            OMA:APRTINA BioCyc:HNEP228405:GI69-2306-MONOMER Uniprot:Q0BZW4
        Length = 455

 Score = 121 (47.7 bits), Expect = 4.8e-06, P = 4.8e-06
 Identities = 31/106 (29%), Positives = 59/106 (55%)

Query:    19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
             R+LVVDD     R+L+  L    + V        AL++ +  +   +I++ DV MP MDG
Sbjct:     4 RILVVDDIEANRRLLQAKLEAQYHTVLMAENGPQALEVAQ--RENPEIILLDVMMPGMDG 61

Query:    79 FKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
             +++ +++  +     +PV+M++     +D +KG+  GA ++L KP+
Sbjct:    62 YEVCQRLKADPTTSYIPVVMVTALSEMEDRVKGLAAGAEDFLTKPV 107


>TIGR_CMR|GSU_0372 [details] [associations]
            symbol:GSU_0372 "sigma-54 dependent DNA-binding response
            regulator" species:243231 "Geobacter sulfurreducens PCA"
            [GO:0000156 "phosphorelay response regulator activity"
            evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
            InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
            Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
            PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
            GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
            InterPro:IPR025662 InterPro:IPR025943 PROSITE:PS00675
            PROSITE:PS00676 HSSP:P10957 RefSeq:NP_951431.2 GeneID:2686674
            KEGG:gsu:GSU0372 PATRIC:22023488 ProtClustDB:CLSK827784
            BioCyc:GSUL243231:GH27-388-MONOMER Uniprot:Q74G75
        Length = 455

 Score = 121 (47.7 bits), Expect = 4.8e-06, P = 4.8e-06
 Identities = 30/103 (29%), Positives = 55/103 (53%)

Query:    20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
             +L+VDD+     IL+ +L    YE T     + AL +L   +  +D++++D+ M  M G 
Sbjct:     5 ILIVDDERGQREILQTILEGERYETTTAAGGQEALALL--DEREFDVILTDLKMQGMSGM 62

Query:    80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
             +L E++   +    +IMM+  G     ++ +  GA +YL KP+
Sbjct:    63 ELLERLLAADPQQCIIMMTAHGTVDSAVEAMKKGAFDYLEKPL 105


>TAIR|locus:2025911 [details] [associations]
            symbol:ARR3 "response regulator 3" species:3702
            "Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
            activity" evidence=IEA;ISS;IDA] [GO:0000160 "phosphorelay signal
            transduction system" evidence=IEA;IDA;TAS] [GO:0006355 "regulation
            of transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009736
            "cytokinin mediated signaling pathway" evidence=TAS] [GO:0010114
            "response to red light" evidence=IMP] [GO:0010161 "red light
            signaling pathway" evidence=IMP] [GO:0007623 "circadian rhythm"
            evidence=IMP] [GO:0042752 "regulation of circadian rhythm"
            evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0009735 "response to cytokinin
            stimulus" evidence=IEP] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
            GO:GO:0007623 GO:GO:0006351 GO:GO:0042752 EMBL:AC007258
            GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HOGENOM:HOG000034820 KO:K14492 EMBL:AB008486 IPI:IPI00532280
            PIR:T50853 RefSeq:NP_176202.1 UniGene:At.237
            ProteinModelPortal:Q9ZWS9 SMR:Q9ZWS9 IntAct:Q9ZWS9 STRING:Q9ZWS9
            EnsemblPlants:AT1G59940.1 GeneID:842288 KEGG:ath:AT1G59940
            GeneFarm:4120 TAIR:At1g59940 eggNOG:COG3706 InParanoid:Q9ZWS9
            OMA:RSEMIGI PhylomeDB:Q9ZWS9 ProtClustDB:CLSN2912722
            Genevestigator:Q9ZWS9 GermOnline:AT1G59940 GO:GO:0010161
            Uniprot:Q9ZWS9
        Length = 231

 Score = 118 (46.6 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 33/139 (23%), Positives = 73/139 (52%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG---------YDIVI 68
             + VL VDD  +   ++E++LR    +VT  +    AL+ L +  +           D++I
Sbjct:    33 VHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVEFDRLKVDLII 92

Query:    69 SDVHMPDMDGFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
             +D  MP M G++L +++       ++PV++MS +     + + +  GA ++LLKP+++ +
Sbjct:    93 TDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKPVKLAD 152

Query:   126 LRNIWQHVAQQPKPFEESD 144
             ++ +  ++ +  K   E +
Sbjct:   153 VKRLRSYLTRDVKVAAEGN 171


>UNIPROTKB|Q747L2 [details] [associations]
            symbol:GSU3253 "Response regulator, putative"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0035556 "intracellular signal transduction" evidence=ISS]
            InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
            GO:GO:0006355 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
            GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
            HOGENOM:HOG000034820 RefSeq:NP_954294.1 ProteinModelPortal:Q747L2
            GeneID:2688275 KEGG:gsu:GSU3253 PATRIC:22029347 OMA:LCTAFSC
            ProtClustDB:CLSK829186 BioCyc:GSUL243231:GH27-3229-MONOMER
            Uniprot:Q747L2
        Length = 123

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 35/126 (27%), Positives = 67/126 (53%)

Query:    19 RVLVVDDDPIWLRIL-EKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             R+LVVDD+   +R+L  + L +  +EV     A  A+D +R  ++ +D+++ D+ + +  
Sbjct:     3 RLLVVDDENS-IRLLYSQELAEEGHEVVTAATAAEAVDKIR--EHEFDLIVLDIKLKNES 59

Query:    78 GFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
             G  L ++V  E  +LPV++ +   C +D        A  Y++K   + EL+   + V  +
Sbjct:    60 GLDLLQKVVKERHNLPVVLCTAFSCFKDDFSAWL--ADGYVVKSSDLSELKEEVKRVLAK 117

Query:   137 PKPFEE 142
              KP +E
Sbjct:   118 RKPGKE 123


>TIGR_CMR|GSU_3253 [details] [associations]
            symbol:GSU_3253 "response regulator" species:243231
            "Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
            regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
            transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
            PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0005622
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
            InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
            RefSeq:NP_954294.1 ProteinModelPortal:Q747L2 GeneID:2688275
            KEGG:gsu:GSU3253 PATRIC:22029347 OMA:LCTAFSC ProtClustDB:CLSK829186
            BioCyc:GSUL243231:GH27-3229-MONOMER Uniprot:Q747L2
        Length = 123

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 35/126 (27%), Positives = 67/126 (53%)

Query:    19 RVLVVDDDPIWLRIL-EKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             R+LVVDD+   +R+L  + L +  +EV     A  A+D +R  ++ +D+++ D+ + +  
Sbjct:     3 RLLVVDDENS-IRLLYSQELAEEGHEVVTAATAAEAVDKIR--EHEFDLIVLDIKLKNES 59

Query:    78 GFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
             G  L ++V  E  +LPV++ +   C +D        A  Y++K   + EL+   + V  +
Sbjct:    60 GLDLLQKVVKERHNLPVVLCTAFSCFKDDFSAWL--ADGYVVKSSDLSELKEEVKRVLAK 117

Query:   137 PKPFEE 142
              KP +E
Sbjct:   118 RKPGKE 123


>TIGR_CMR|DET_1231 [details] [associations]
            symbol:DET_1231 "DNA-binding response regulator"
            species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
            "phosphorelay response regulator activity" evidence=ISS]
            [GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
            Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
            GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
            GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
            SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
            RefSeq:YP_181944.1 ProteinModelPortal:Q3Z755 STRING:Q3Z755
            GeneID:3229494 KEGG:det:DET1231 PATRIC:21609493 OMA:HIWESES
            ProtClustDB:CLSK741625 BioCyc:DETH243164:GJNF-1232-MONOMER
            Uniprot:Q3Z755
        Length = 225

 Score = 117 (46.2 bits), Expect = 6.4e-06, P = 6.4e-06
 Identities = 28/110 (25%), Positives = 58/110 (52%)

Query:    18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
             +++L+++DD    +++   L +  Y V   +  ++  +M       +D++I D+ +P++D
Sbjct:     3 MKLLLIEDDANLAKVITSGLEENGYAVNWESNGKLGAEMALAYT--FDVIILDIMLPELD 60

Query:    78 GFKL-HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
             GF + H+        P+IM++      D + G+  GA +YL+KP    EL
Sbjct:    61 GFAVCHKIRSNGNQTPIIMLTARYQEADKVNGLNCGADDYLVKPFSFPEL 110

WARNING:  HSPs involving 127 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      184       170   0.00086  108 3  11 22  0.38    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  377
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  165 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.76u 0.09s 14.85t   Elapsed:  00:00:01
  Total cpu time:  14.79u 0.09s 14.88t   Elapsed:  00:00:01
  Start:  Fri May 10 03:46:15 2013   End:  Fri May 10 03:46:16 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
