BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029986
(184 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255556280|ref|XP_002519174.1| sensor histidine kinase, putative [Ricinus communis]
gi|223541489|gb|EEF43038.1| sensor histidine kinase, putative [Ricinus communis]
Length = 682
Score = 253 bits (645), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 139/210 (66%), Positives = 155/210 (73%), Gaps = 26/210 (12%)
Query: 1 MSPASSSVA------VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIAL 54
MS ASSSVA V DQFPAGLRVLVVDDDP L ILEKMLR CLYEVTKCNRAE AL
Sbjct: 10 MSTASSSVAWKAGEVVPDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETAL 69
Query: 55 DMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGAC 114
+LR +KNGYDIVISDVHMPDMDGFKL E +GLEMDLPVIMMS D VMKGVTHGAC
Sbjct: 70 SLLRENKNGYDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADEAKSVVMKGVTHGAC 129
Query: 115 NYLLKPIRIKELRNIWQHVA--------------------QQPKPFEESDDSYSVNQGNW 154
+YL+KP+RI+ L+NIWQHV +QPK E++D S S N+GNW
Sbjct: 130 DYLIKPVRIEALKNIWQHVVRKKRNEWKDLEQSGSVEEGDRQPKQSEDADYSSSANEGNW 189
Query: 155 RTSNRRKDEEEEAEKRDDTSTLKKPRFLVS 184
R S +RKDEEEE ++RDDTSTLKKPR + S
Sbjct: 190 RNSKKRKDEEEEGDERDDTSTLKKPRVVWS 219
>gi|313184318|emb|CBL94183.1| putative type-b response regulator (sensor histidine kinase) [Malus
x domestica]
Length = 674
Score = 249 bits (635), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 137/210 (65%), Positives = 156/210 (74%), Gaps = 26/210 (12%)
Query: 1 MSPASSSVA------VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIAL 54
MS ASSS A V+DQFPAGLRVLVVDDDP L ILE+MLR CLYEVTKCNRAEIAL
Sbjct: 10 MSTASSSGAWKSGDVVTDQFPAGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEIAL 69
Query: 55 DMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGAC 114
+LR +KNG+DIVISDVHMPDMDGFKL EQVGLEMDLPVIMMS D VMKGVTHGAC
Sbjct: 70 SLLRENKNGFDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGQSVVMKGVTHGAC 129
Query: 115 NYLLKPIRIKELRNIWQHVA--------------------QQPKPFEESDDSYSVNQGNW 154
+YL+KP+RI+ L+NIWQHV +Q KP E++D S S N+G W
Sbjct: 130 DYLIKPVRIEALKNIWQHVVRKKKNEWKDVEQSGSVEEGDRQQKPSEDADYSSSANEGTW 189
Query: 155 RTSNRRKDEEEEAEKRDDTSTLKKPRFLVS 184
+ S RRKDEEEE ++RDD+STLKKPR + S
Sbjct: 190 KNSKRRKDEEEETDERDDSSTLKKPRVVWS 219
>gi|449464732|ref|XP_004150083.1| PREDICTED: two-component response regulator ARR2-like [Cucumis
sativus]
gi|449501499|ref|XP_004161384.1| PREDICTED: two-component response regulator ARR2-like [Cucumis
sativus]
Length = 673
Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/194 (63%), Positives = 143/194 (73%), Gaps = 20/194 (10%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
SDQFPAGLRVLVVDDDP L+ILEKML+ C Y VTKCNRAEIAL MLR +KNG+DIV+SD
Sbjct: 30 SDQFPAGLRVLVVDDDPTCLKILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSD 89
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
VHMPDMDGFKL EQVGLEMDLPVIMMS D VMKGV HGAC+YL+KP+RI+ LRN+W
Sbjct: 90 VHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNLW 149
Query: 131 QHVAQQPKP--------------------FEESDDSYSVNQGNWRTSNRRKDEEEEAEKR 170
QHV ++ K E ++ S S +G+W +S RR+D EEE E+R
Sbjct: 150 QHVVRKRKTEWKDLEQSGSVDEGDREQNLSEGANYSSSAYEGSWNSSKRRRDAEEEPEER 209
Query: 171 DDTSTLKKPRFLVS 184
DDTSTLKKPR + S
Sbjct: 210 DDTSTLKKPRVVWS 223
>gi|449432892|ref|XP_004134232.1| PREDICTED: two-component response regulator ARR2-like [Cucumis
sativus]
gi|449503838|ref|XP_004162202.1| PREDICTED: two-component response regulator ARR2-like [Cucumis
sativus]
Length = 660
Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 128/209 (61%), Positives = 151/209 (72%), Gaps = 25/209 (11%)
Query: 1 MSPASSSV------AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIAL 54
MS ASSS AV DQFPAGLRVLVVDDDP L ILEKMLR C Y+VT C+RAE AL
Sbjct: 1 MSTASSSSVRKAGEAVPDQFPAGLRVLVVDDDPTCLMILEKMLRICRYDVTNCSRAEDAL 60
Query: 55 DMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGAC 114
+LR +KNG+DIV+SDVHMPDMDGFKL E +GLEMDLPVIMMSVD VMKGVTHGAC
Sbjct: 61 SLLRQNKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGAC 120
Query: 115 NYLLKPIRIKELRNIWQHVA-------------------QQPKPFEESDDSYSVNQGNWR 155
+YL+KP+R++ L+NIWQHV +Q K E++D S S N+G+WR
Sbjct: 121 DYLIKPVRMEALKNIWQHVVRKRKNEWKDLEQTCVDDVDRQQKTNEDADYSSSANEGSWR 180
Query: 156 TSNRRKDEEEEAEKRDDTSTLKKPRFLVS 184
S RRKD+ E+ E+RDD+STLKKPR + S
Sbjct: 181 NSKRRKDDVEDPEERDDSSTLKKPRVVWS 209
>gi|33330870|gb|AAQ10678.1| type-B response regulator [Catharanthus roseus]
Length = 643
Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 131/202 (64%), Positives = 151/202 (74%), Gaps = 22/202 (10%)
Query: 5 SSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY 64
S VSDQFPAGLRVLVVDDDP LRILEKML+ CLYEVTKCNRAEIAL +LR ++NGY
Sbjct: 23 SGGDGVSDQFPAGLRVLVVDDDPTCLRILEKMLKNCLYEVTKCNRAEIALKLLRDNRNGY 82
Query: 65 DIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIK 124
DIVISDVHMPDMDGFKL EQVGLEMDLPVIMMS D VMKGVTHGAC+YL+KP+RI+
Sbjct: 83 DIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKNVVMKGVTHGACDYLIKPVRIE 142
Query: 125 ELRNIWQHVA----------------------QQPKPFEESDDSYSVNQGNWRTSNRRKD 162
L+NIWQHV +Q KP E+ D S S N+GNW+ S +RKD
Sbjct: 143 ALKNIWQHVVRKGKHEWKEKDYEQSGSVEDGERQQKPNEDVDYSSSANEGNWKNSKKRKD 202
Query: 163 EEEEAEKRDDTSTLKKPRFLVS 184
+EE+ E++DD+STLKKPR + S
Sbjct: 203 DEEDQEEKDDSSTLKKPRVVWS 224
>gi|224106962|ref|XP_002314325.1| type-b response regulator [Populus trichocarpa]
gi|222863365|gb|EEF00496.1| type-b response regulator [Populus trichocarpa]
Length = 634
Score = 245 bits (625), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 137/205 (66%), Positives = 154/205 (75%), Gaps = 22/205 (10%)
Query: 1 MSPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS 60
MS ASS VSDQFPAGLRVLVVDDDP L ILEKMLR CLYEVTKCNRAEIAL +LR +
Sbjct: 11 MSTASSG-GVSDQFPAGLRVLVVDDDPTCLVILEKMLRTCLYEVTKCNRAEIALSLLREN 69
Query: 61 KNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
+NGYDIVISDVHMPDMDGFKL E +GLEMDLPVIMMS D VMKGVTHGAC+YL+KP
Sbjct: 70 RNGYDIVISDVHMPDMDGFKLLELIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKP 129
Query: 121 IRIKELRNIWQHVA---------------------QQPKPFEESDDSYSVNQGNWRTSNR 159
IRI+ L+NIWQHV +Q K E++D S S N+G+W+ S R
Sbjct: 130 IRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEGGDRQQKQSEDADYSSSANEGSWKNSKR 189
Query: 160 RKDEEEEAEKRDDTSTLKKPRFLVS 184
RKDEEEEA++RDDTSTLKKPR + S
Sbjct: 190 RKDEEEEADERDDTSTLKKPRVVWS 214
>gi|359477139|ref|XP_002275142.2| PREDICTED: two-component response regulator ARR1-like [Vitis
vinifera]
Length = 681
Score = 244 bits (624), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 136/210 (64%), Positives = 154/210 (73%), Gaps = 26/210 (12%)
Query: 1 MSPASSSVA------VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIAL 54
MS ASSS A V DQFPAGLRVLVVDDDP L ILEKMLR CLYEVTKCNRAE AL
Sbjct: 10 MSTASSSGAWKAGDVVPDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETAL 69
Query: 55 DMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGAC 114
+LR +K+G+DIVISDVHMPDMDGFKL E +GLEMDLPVIMMS D VMKGVTHGAC
Sbjct: 70 SLLRGNKSGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKHVVMKGVTHGAC 129
Query: 115 NYLLKPIRIKELRNIWQHVA--------------------QQPKPFEESDDSYSVNQGNW 154
+YL+KP+RI+ L+NIWQHV +Q KP E+ D S S N+GNW
Sbjct: 130 DYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEDGDRQQKPSEDVDYSSSANEGNW 189
Query: 155 RTSNRRKDEEEEAEKRDDTSTLKKPRFLVS 184
+ S RRKDEE++AE+RDDTSTLKKPR + S
Sbjct: 190 KNSKRRKDEEDDAEERDDTSTLKKPRVVWS 219
>gi|298103716|emb|CBM42559.1| putative B-type response regulator 13 [Populus x canadensis]
Length = 670
Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/205 (66%), Positives = 156/205 (76%), Gaps = 22/205 (10%)
Query: 1 MSPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS 60
MS ASS VSDQFPAGLRVLVVDDDP L ILEKMLR CLYEVTKCNRAEIAL +LR +
Sbjct: 1 MSTASSG-GVSDQFPAGLRVLVVDDDPTCLVILEKMLRTCLYEVTKCNRAEIALSLLREN 59
Query: 61 KNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
+NGYDIVISDVHMPDMDGFKL E +GLEMDLPVIMMS D VMKGVTHGAC+YL+KP
Sbjct: 60 RNGYDIVISDVHMPDMDGFKLLELIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKP 119
Query: 121 IRIKELRNIWQHVAQQPK------------------PFEESDD---SYSVNQGNWRTSNR 159
IRI+ L+NIWQHV ++ K P ++S+D S S N+G+W+ S R
Sbjct: 120 IRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEGGDRPQKQSEDADYSSSANEGSWKNSKR 179
Query: 160 RKDEEEEAEKRDDTSTLKKPRFLVS 184
RKDEEEEA++RDDTSTLKKPR + S
Sbjct: 180 RKDEEEEADERDDTSTLKKPRVVWS 204
>gi|296083291|emb|CBI22927.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/210 (64%), Positives = 154/210 (73%), Gaps = 26/210 (12%)
Query: 1 MSPASSSVA------VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIAL 54
MS ASSS A V DQFPAGLRVLVVDDDP L ILEKMLR CLYEVTKCNRAE AL
Sbjct: 10 MSTASSSGAWKAGDVVPDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETAL 69
Query: 55 DMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGAC 114
+LR +K+G+DIVISDVHMPDMDGFKL E +GLEMDLPVIMMS D VMKGVTHGAC
Sbjct: 70 SLLRGNKSGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKHVVMKGVTHGAC 129
Query: 115 NYLLKPIRIKELRNIWQHVA--------------------QQPKPFEESDDSYSVNQGNW 154
+YL+KP+RI+ L+NIWQHV +Q KP E+ D S S N+GNW
Sbjct: 130 DYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEDGDRQQKPSEDVDYSSSANEGNW 189
Query: 155 RTSNRRKDEEEEAEKRDDTSTLKKPRFLVS 184
+ S RRKDEE++AE+RDDTSTLKKPR + S
Sbjct: 190 KNSKRRKDEEDDAEERDDTSTLKKPRVVWS 219
>gi|356521815|ref|XP_003529546.1| PREDICTED: two-component response regulator ARR2-like [Glycine max]
Length = 679
Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 131/194 (67%), Positives = 148/194 (76%), Gaps = 20/194 (10%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
AVSDQFPAGLRVLVVDDDP L ILEKMLR CLYEVTKCNRAE AL +LR +KNG+DIVI
Sbjct: 24 AVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVI 83
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDVHMPDMDGFKL E +GLEMDLPVIMMS D VMKGVTHGAC+YL+KP+RI+ L+N
Sbjct: 84 SDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKN 143
Query: 129 IWQHVA--------------------QQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAE 168
IWQHV +QPK +E+D S S N+G+WR S +R+DEEEEAE
Sbjct: 144 IWQHVVRKRKNEWKDAEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRRDEEEEAE 203
Query: 169 KRDDTSTLKKPRFL 182
RDDTSTLKKPR +
Sbjct: 204 DRDDTSTLKKPRVV 217
>gi|356564542|ref|XP_003550512.1| PREDICTED: two-component response regulator ARR2-like [Glycine max]
Length = 677
Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/194 (67%), Positives = 148/194 (76%), Gaps = 20/194 (10%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
AVSDQFPAGLRVLVVDDDP L ILEKMLR CLYEVTKCNRAE AL +LR +KNG+DIVI
Sbjct: 24 AVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVI 83
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDVHMPDMDGFKL E +GLEMDLPVIMMS D VMKGVTHGAC+YL+KP+RI+ L+N
Sbjct: 84 SDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKN 143
Query: 129 IWQHVAQQ--------------------PKPFEESDDSYSVNQGNWRTSNRRKDEEEEAE 168
IWQHV ++ PK +E+D S S N+G+WR S +R+DEEEEAE
Sbjct: 144 IWQHVVRKRKNEWKDAEQSGSAEEGDRHPKASDEADYSSSANEGSWRNSKKRRDEEEEAE 203
Query: 169 KRDDTSTLKKPRFL 182
RDDTSTLKKPR +
Sbjct: 204 DRDDTSTLKKPRVV 217
>gi|109631196|gb|ABG35774.1| SRR384 [Striga asiatica]
Length = 569
Score = 239 bits (609), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 125/199 (62%), Positives = 142/199 (71%), Gaps = 21/199 (10%)
Query: 6 SSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
S +SDQFPAGLRVLVVDDDP LRILEKML+ CLYEVT CNRA IAL LR +N YD
Sbjct: 19 SGNGLSDQFPAGLRVLVVDDDPTCLRILEKMLKNCLYEVTTCNRAGIALKFLRDKRNVYD 78
Query: 66 IVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
IVISDVHMPDMDGFKL E VGLEMDLPV MMS D VMKGVTHGAC+YL+KPIR++
Sbjct: 79 IVISDVHMPDMDGFKLLEHVGLEMDLPVTMMSADDSKNVVMKGVTHGACDYLIKPIRMEA 138
Query: 126 LRNIWQH--------------------VAQQPKPFEESDDSYSVNQGNWRTSNRRKDEEE 165
L+NIWQH V +Q P E+ D S SV++ NW TS +RKDEE+
Sbjct: 139 LKNIWQHLVRKRQHEWKEKDLDQHLGSVDEQKLP-EDLDYSLSVSEENWNTSKKRKDEED 197
Query: 166 EAEKRDDTSTLKKPRFLVS 184
EA +DDTS+LKKPR + S
Sbjct: 198 EAVDKDDTSSLKKPRVVWS 216
>gi|224130444|ref|XP_002328610.1| type-b response regulator [Populus trichocarpa]
gi|222838592|gb|EEE76957.1| type-b response regulator [Populus trichocarpa]
Length = 671
Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 134/201 (66%), Positives = 150/201 (74%), Gaps = 23/201 (11%)
Query: 6 SSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
+S SDQFPAGLRVLVVDDDP L ILEKMLR C YEVTKCNRAEIAL +LR +KNGYD
Sbjct: 22 ASDGASDQFPAGLRVLVVDDDPTCLVILEKMLRTCRYEVTKCNRAEIALSLLRENKNGYD 81
Query: 66 IVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
IVISDVHMPDMDGFKL EQ+GLEMDLPVIMMS D VMKGVTHGAC+YL+KPIRI+
Sbjct: 82 IVISDVHMPDMDGFKLLEQIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPIRIEA 141
Query: 126 LRNIWQHVA----------------------QQPKPFEESDDSYSVNQGNWRTSNRRKDE 163
L+NIWQHV QQ +P E++D S S N+G+W+ S RRKDE
Sbjct: 142 LKNIWQHVVRKRKNEWKDLEQSGSVEEGGDRQQKQP-EDADYSSSANEGSWKNSKRRKDE 200
Query: 164 EEEAEKRDDTSTLKKPRFLVS 184
EEEAE+RDDTS LKKPR + S
Sbjct: 201 EEEAEERDDTSALKKPRVVWS 221
>gi|298103714|emb|CBM42558.1| putative B-type response regulator 12 [Populus x canadensis]
Length = 690
Score = 232 bits (592), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 133/201 (66%), Positives = 149/201 (74%), Gaps = 23/201 (11%)
Query: 6 SSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
+S SDQFPAGLRVLVVDDDP L ILEKMLR C YEVTKCNRAEIAL +LR +KNGYD
Sbjct: 22 ASDGASDQFPAGLRVLVVDDDPTCLVILEKMLRTCRYEVTKCNRAEIALSLLRENKNGYD 81
Query: 66 IVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
IVISDVHMPDMDGFKL EQ+GLEMDLPVIMMS D VMKGVTHGAC+YL+KPIRI+
Sbjct: 82 IVISDVHMPDMDGFKLLEQIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPIRIEA 141
Query: 126 LRNIWQHVA----------------------QQPKPFEESDDSYSVNQGNWRTSNRRKDE 163
L+NIWQHV QQ +P E++D S S N+G+W+ S RRKDE
Sbjct: 142 LKNIWQHVVRKRKNEWRDLEQSGSVEEGGDRQQKQP-EDADYSSSANEGSWKNSKRRKDE 200
Query: 164 EEEAEKRDDTSTLKKPRFLVS 184
EEE E+RDDTS LKKPR + S
Sbjct: 201 EEETEERDDTSALKKPRVVWS 221
>gi|297804596|ref|XP_002870182.1| hypothetical protein ARALYDRAFT_915160 [Arabidopsis lyrata subsp.
lyrata]
gi|297316018|gb|EFH46441.1| hypothetical protein ARALYDRAFT_915160 [Arabidopsis lyrata subsp.
lyrata]
Length = 676
Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/211 (55%), Positives = 146/211 (69%), Gaps = 28/211 (13%)
Query: 2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK 61
S ++ + SD FPA LRVLVVDDDP L ILE+ML CLY VTKCNRAEIAL +LR +K
Sbjct: 12 SGTTAGGSNSDPFPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAEIALSLLRKNK 71
Query: 62 NGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
NG+DIVISDVHMPDMDGFKL E VGLEMDLPVIMMS D V+KGVTHGA +YL+KP+
Sbjct: 72 NGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPV 131
Query: 122 RIKELRNIWQHVA--------------------------QQPKPFEESDDSYSVNQGNWR 155
RI+ L+NIWQHV QQ + + ++S S+N+GNWR
Sbjct: 132 RIEALKNIWQHVVRKKRNDWNVSEHSGGSIEDTGGDRDRQQQQREDADNNSSSINEGNWR 191
Query: 156 TSNRRKDEE--EEAEKRDDTSTLKKPRFLVS 184
+S +RK+EE E+ + ++DTS+LKKPR + S
Sbjct: 192 SSRKRKEEEVDEQGDDKEDTSSLKKPRVVWS 222
>gi|356556050|ref|XP_003546340.1| PREDICTED: two-component response regulator ARR2-like [Glycine max]
Length = 672
Score = 228 bits (581), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 122/201 (60%), Positives = 148/201 (73%), Gaps = 22/201 (10%)
Query: 2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK 61
SP + +VSDQFPAGLRVLVVDDDP L ILE+MLR CLYEVTKC RAE+AL +LR +K
Sbjct: 13 SPLKAGDSVSDQFPAGLRVLVVDDDPTCLMILERMLRACLYEVTKCQRAEVALSLLRENK 72
Query: 62 NGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
NG+DIV+SDVHMPDMDGFKL E +GLEMDLPVIMMS D VMKGVTHGAC+YL+KP+
Sbjct: 73 NGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKHVVMKGVTHGACDYLIKPV 132
Query: 122 RIKELRNIWQHVA--------------------QQPKPFEESDDSYSVNQGNWRTSNRRK 161
RI+ L+NIWQHV Q PK ++ D S SVN+ R+S +R+
Sbjct: 133 RIEALKNIWQHVIRKRKNGLRDVEQSGSVEEGDQPPKVSDDGDYSSSVNEA--RSSKKRR 190
Query: 162 DEEEEAEKRDDTSTLKKPRFL 182
DE+EE +++DD+STLKKPR +
Sbjct: 191 DEDEEGDEKDDSSTLKKPRVV 211
>gi|356529278|ref|XP_003533222.1| PREDICTED: two-component response regulator ARR2-like [Glycine max]
Length = 673
Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/199 (61%), Positives = 148/199 (74%), Gaps = 18/199 (9%)
Query: 2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK 61
SP + VSDQFPAGLRVLVVDDDP L ILE+MLR CLYEVTKC RAE+AL +LR +K
Sbjct: 13 SPLKAGDTVSDQFPAGLRVLVVDDDPTCLMILERMLRACLYEVTKCKRAEVALSLLRENK 72
Query: 62 NGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
NG+DIV+SDVHMPDMDGFKL E +GLEMDLPVIMMS D Q VMKGVTHGAC+YL+KP+
Sbjct: 73 NGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKQVVMKGVTHGACDYLIKPV 132
Query: 122 RIKELRNIWQHVAQQPK-----------------PFEESDD-SYSVNQGNWRTSNRRKDE 163
RI+ L+NIWQHV + K P + SDD +YS + ++S +R+DE
Sbjct: 133 RIEALKNIWQHVVRMRKNGLRDVEQSGSMEEGDRPPKGSDDGNYSSSVNEAKSSKKRRDE 192
Query: 164 EEEAEKRDDTSTLKKPRFL 182
+EE ++RDD+STLKKPR +
Sbjct: 193 DEEGDERDDSSTLKKPRVV 211
>gi|94449082|gb|ABF19058.1| ARR2 [Arabidopsis thaliana]
gi|94449084|gb|ABF19059.1| ARR2 [Arabidopsis thaliana]
Length = 664
Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/209 (55%), Positives = 143/209 (68%), Gaps = 28/209 (13%)
Query: 2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK 61
S ++ + SD FPA LRVLVVDDDP L ILE+ML CLY VTKCNRAEIAL +LR +K
Sbjct: 12 SGTAAGGSNSDPFPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAEIALSLLRKNK 71
Query: 62 NGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
NG+DIVISDVHMPDMDGFKL E VGLEMDLPVIMMS D V+KGVTHGA +YL+KP+
Sbjct: 72 NGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPV 131
Query: 122 RIKELRNIWQHVA--------------------------QQPKPFEESDDSYSVNQGNWR 155
RI+ L+NIWQHV QQ + ++S SVN+GN R
Sbjct: 132 RIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNGR 191
Query: 156 TSNRRKDEE--EEAEKRDDTSTLKKPRFL 182
+S +RK+EE ++ + ++D+S+LKKPR +
Sbjct: 192 SSRKRKEEEVDDQGDDKEDSSSLKKPRVV 220
>gi|240255903|ref|NP_193346.4| two-component response regulator ARR2 [Arabidopsis thaliana]
gi|50400708|sp|Q9ZWJ9.1|ARR2_ARATH RecName: Full=Two-component response regulator ARR2; AltName:
Full=Receiver-like protein 5
gi|4210451|dbj|BAA74527.1| ARR2 protein [Arabidopsis thaliana]
gi|51969616|dbj|BAD43500.1| hypothetical protein [Arabidopsis thaliana]
gi|51970060|dbj|BAD43722.1| hypothetical protein [Arabidopsis thaliana]
gi|51971425|dbj|BAD44377.1| hypothetical protein [Arabidopsis thaliana]
gi|94958295|gb|ABF47278.1| ARR2 [Arabidopsis thaliana]
gi|94958297|gb|ABF47279.1| ARR2 [Arabidopsis thaliana]
gi|332658294|gb|AEE83694.1| two-component response regulator ARR2, partial [Arabidopsis
thaliana]
Length = 664
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/209 (54%), Positives = 142/209 (67%), Gaps = 28/209 (13%)
Query: 2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK 61
S ++ + SD FPA LRVLVVDDDP L ILE+ML CLY VTKCNRAE AL +LR +K
Sbjct: 12 SGTAAGGSNSDPFPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNK 71
Query: 62 NGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
NG+DIVISDVHMPDMDGFKL E VGLEMDLPVIMMS D V+KGVTHGA +YL+KP+
Sbjct: 72 NGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPV 131
Query: 122 RIKELRNIWQHVA--------------------------QQPKPFEESDDSYSVNQGNWR 155
RI+ L+NIWQHV QQ + ++S SVN+GN R
Sbjct: 132 RIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNGR 191
Query: 156 TSNRRKDEE--EEAEKRDDTSTLKKPRFL 182
+S +RK+EE ++ + ++D+S+LKKPR +
Sbjct: 192 SSRKRKEEEVDDQGDDKEDSSSLKKPRVV 220
>gi|42570473|ref|NP_850600.2| two-component response regulator ARR1 [Arabidopsis thaliana]
gi|222423228|dbj|BAH19591.1| AT3G16857 [Arabidopsis thaliana]
gi|332642354|gb|AEE75875.1| two-component response regulator ARR1 [Arabidopsis thaliana]
Length = 669
Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 145/216 (67%), Gaps = 40/216 (18%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
V + FP+GLRVLVVDDDP L ILE+MLR CLYEVTKCNRAE+AL +LR +K+G+DIVI
Sbjct: 28 TVVEMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVI 87
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDVHMPDMDGFKL E VGLEMDLPVIMMS D V+KGVTHGA +YL+KP+R++ L+N
Sbjct: 88 SDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKN 147
Query: 129 IWQHVAQQPK----------PFEES-------------------------DDSYSVNQG- 152
IWQHV ++ + EE+ D+S SVN+G
Sbjct: 148 IWQHVVRKRRSEWSVPEHSGSIEETGERQQQQHRGGGGGAAVSGGEDAVDDNSSSVNEGN 207
Query: 153 NWRTSNR-RKDEEEEAE---KRDDTSTLKKPRFLVS 184
NWR+S+R RKDEE E + K +D S LKKPR + S
Sbjct: 208 NWRSSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWS 243
>gi|4210449|dbj|BAA74528.1| ARR1 protein [Arabidopsis thaliana]
Length = 669
Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 145/216 (67%), Gaps = 40/216 (18%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
V + FP+GLRVLVVDDDP L ILE+MLR CLYEVTKCNRAE+AL +LR +K+G+DIVI
Sbjct: 28 TVVEMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVI 87
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDVHMPDMDGFKL E VGLEMDLPVIMMS D V+KGVTHGA +YL+KP+R++ L+N
Sbjct: 88 SDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKN 147
Query: 129 IWQHVAQQPK----------PFEES-------------------------DDSYSVNQG- 152
IWQHV ++ + EE+ D+S SVN+G
Sbjct: 148 IWQHVVRKRRSEWSVPEHSGSIEETGERQQQQHRGGGGGAAVSGGEDAVDDNSSSVNEGN 207
Query: 153 NWRTSNR-RKDEEEEAE---KRDDTSTLKKPRFLVS 184
NWR+S+R RKDEE E + K +D S LKKPR + S
Sbjct: 208 NWRSSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWS 243
>gi|297830298|ref|XP_002883031.1| hypothetical protein ARALYDRAFT_479152 [Arabidopsis lyrata subsp.
lyrata]
gi|297328871|gb|EFH59290.1| hypothetical protein ARALYDRAFT_479152 [Arabidopsis lyrata subsp.
lyrata]
Length = 687
Score = 218 bits (556), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 119/215 (55%), Positives = 145/215 (67%), Gaps = 40/215 (18%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
V + FP+GLRVLVVDDDP L ILE+MLR CLYEVTKCNRAE+AL +LR +K+G+DIVIS
Sbjct: 27 VVEMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVIS 86
Query: 70 DVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
DVHMPDMDGFKL E VGLEMDLPVIMMS D V+KGVTHGA +YL+KP+R++ L+NI
Sbjct: 87 DVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNI 146
Query: 130 WQHVAQQPK----------PFEES-------------------------DDSYSVNQG-N 153
WQHV ++ + EE+ D+S SVN+G N
Sbjct: 147 WQHVVRKRRSEWSVPEHSGSIEETGERQQQQHRGGGGGAAVSGGEDAVDDNSSSVNEGNN 206
Query: 154 WRTSNR-RKDEEEEAE---KRDDTSTLKKPRFLVS 184
WR+S+R RKDEE E + K +D S LKKPR + S
Sbjct: 207 WRSSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWS 241
>gi|15810171|gb|AAL06987.1| AT3g16857/MUH15_1 [Arabidopsis thaliana]
Length = 690
Score = 218 bits (556), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 145/216 (67%), Gaps = 40/216 (18%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
V + FP+GLRVLVVDDDP L ILE+MLR CLYEVTKCNRAE+AL +LR +K+G+DIVI
Sbjct: 28 TVVEMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVI 87
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDVHMPDMDGFKL E VGLEMDLPVIMMS D V+KGVTHGA +YL+KP+R++ L+N
Sbjct: 88 SDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKN 147
Query: 129 IWQHVAQQPK----------PFEES-------------------------DDSYSVNQG- 152
IWQHV ++ + EE+ D+S SVN+G
Sbjct: 148 IWQHVVRKRRSEWSVPEHSGSIEETGERQQQQHRGGGGGAAVSGGEDAVDDNSSSVNEGN 207
Query: 153 NWRTSNR-RKDEEEEAE---KRDDTSTLKKPRFLVS 184
NWR+S+R RKDEE E + K +D S LKKPR + S
Sbjct: 208 NWRSSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWS 243
>gi|42564262|ref|NP_566561.2| two-component response regulator ARR1 [Arabidopsis thaliana]
gi|50400604|sp|Q940D0.2|ARR1_ARATH RecName: Full=Two-component response regulator ARR1
gi|11994744|dbj|BAB03073.1| ARR1 protein [Arabidopsis thaliana]
gi|51971120|dbj|BAD44252.1| putative ARR1 protein [Arabidopsis thaliana]
gi|332642355|gb|AEE75876.1| two-component response regulator ARR1 [Arabidopsis thaliana]
Length = 690
Score = 218 bits (555), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 145/216 (67%), Gaps = 40/216 (18%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
V + FP+GLRVLVVDDDP L ILE+MLR CLYEVTKCNRAE+AL +LR +K+G+DIVI
Sbjct: 28 TVVEMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVI 87
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDVHMPDMDGFKL E VGLEMDLPVIMMS D V+KGVTHGA +YL+KP+R++ L+N
Sbjct: 88 SDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKN 147
Query: 129 IWQHVAQQPK----------PFEES-------------------------DDSYSVNQG- 152
IWQHV ++ + EE+ D+S SVN+G
Sbjct: 148 IWQHVVRKRRSEWSVPEHSGSIEETGERQQQQHRGGGGGAAVSGGEDAVDDNSSSVNEGN 207
Query: 153 NWRTSNR-RKDEEEEAE---KRDDTSTLKKPRFLVS 184
NWR+S+R RKDEE E + K +D S LKKPR + S
Sbjct: 208 NWRSSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWS 243
>gi|51968898|dbj|BAD43141.1| hypothetical protein [Arabidopsis thaliana]
Length = 664
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/209 (54%), Positives = 141/209 (67%), Gaps = 28/209 (13%)
Query: 2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK 61
S ++ + SD FPA LRVLVVD DP L ILE+ML CLY VTKCNRAE AL +LR +K
Sbjct: 12 SGTAAGGSNSDPFPANLRVLVVDGDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNK 71
Query: 62 NGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
NG+DIVISDVHMPDMDGFKL E VGLEMDLPVIMMS D V+KGVTHGA +YL+KP+
Sbjct: 72 NGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPV 131
Query: 122 RIKELRNIWQHVA--------------------------QQPKPFEESDDSYSVNQGNWR 155
RI+ L+NIWQHV QQ + ++S SVN+GN R
Sbjct: 132 RIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNGR 191
Query: 156 TSNRRKDEE--EEAEKRDDTSTLKKPRFL 182
+S +RK+EE ++ + ++D+S+LKKPR +
Sbjct: 192 SSRKRKEEEVDDQGDDKEDSSSLKKPRVV 220
>gi|357449081|ref|XP_003594816.1| Two-component response regulator ARR2 [Medicago truncatula]
gi|355483864|gb|AES65067.1| Two-component response regulator ARR2 [Medicago truncatula]
Length = 606
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/201 (59%), Positives = 146/201 (72%), Gaps = 18/201 (8%)
Query: 2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK 61
SP++S VSDQFPAGLRVLVVDDDP L ILE+MLR CLYEVTKC RAE+AL +LR +K
Sbjct: 17 SPSNSGNLVSDQFPAGLRVLVVDDDPTCLMILERMLRFCLYEVTKCKRAEVALSLLRENK 76
Query: 62 NGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
NG+DIV+SDVHMPDMDGFKL E +GLEMDLPVIMMS D VMKGVTHGAC+YL+KP+
Sbjct: 77 NGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPV 136
Query: 122 RIKELRNIWQHVAQQPKPF------------------EESDDSYSVNQGNWRTSNRRKDE 163
RI+ L+NIWQHV ++ K +D +YS + ++S +R+DE
Sbjct: 137 RIEALKNIWQHVVRKRKNSWKDLRQSGGLDERDREKKASTDANYSSSTNEGKSSKKRRDE 196
Query: 164 EEEAEKRDDTSTLKKPRFLVS 184
E+EA+ RDD ST KKPR + S
Sbjct: 197 EDEADDRDDCSTSKKPRVVWS 217
>gi|388493620|gb|AFK34876.1| unknown [Medicago truncatula]
Length = 606
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/201 (59%), Positives = 146/201 (72%), Gaps = 18/201 (8%)
Query: 2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK 61
SP++S VSDQFPAGLRVLVVDDDP L ILE+MLR CLYEVTKC RAE+AL +LR +K
Sbjct: 17 SPSNSGNLVSDQFPAGLRVLVVDDDPTCLMILERMLRFCLYEVTKCKRAEVALSLLRENK 76
Query: 62 NGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
NG+DIV+SDVHMPDMDGFKL E +GLEMDLPVIMMS D VMKGVTHGAC+YL+KP+
Sbjct: 77 NGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPV 136
Query: 122 RIKELRNIWQHVAQQPKPF------------------EESDDSYSVNQGNWRTSNRRKDE 163
RI+ L+NIWQHV ++ K +D +YS + ++S +R+DE
Sbjct: 137 RIEALKNIWQHVVRKRKNSWKDLRQSGGLDERDREKKASTDANYSSSTNEGKSSKKRRDE 196
Query: 164 EEEAEKRDDTSTLKKPRFLVS 184
E+EA+ RDD ST KKPR + S
Sbjct: 197 EDEADDRDDCSTSKKPRVVWS 217
>gi|343407542|gb|AEM23772.1| RRB2 type-b response regulator [Nicotiana tabacum]
Length = 669
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/197 (62%), Positives = 145/197 (73%), Gaps = 23/197 (11%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
++QFPAGLRVLVVDDDP LRILEKML C YEVTK NRAE AL +LR ++NG+DIVISD
Sbjct: 26 NNQFPAGLRVLVVDDDPTCLRILEKMLWNCHYEVTKSNRAESALSLLRENRNGFDIVISD 85
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
VHMPDMDGFKL E VGLEMDLPVIMMS D VMKGVTHGAC+YL+KP+RI+ L+NIW
Sbjct: 86 VHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKDVVMKGVTHGACDYLIKPVRIEALKNIW 145
Query: 131 QHVA----------------------QQPKPFEESDDSYSVNQ-GNWRTSNRRKDEEEEA 167
QHV +Q KP E+ D S S N+ GNW++S RRK+EE+E
Sbjct: 146 QHVIRKKKHEWKDKDFDQSATAEAGDRQQKPPEDVDYSSSANEGGNWKSSKRRKEEEDET 205
Query: 168 EKRDDTSTLKKPRFLVS 184
E+RDD+S+LKKPR + S
Sbjct: 206 EERDDSSSLKKPRVVWS 222
>gi|225425924|ref|XP_002267616.1| PREDICTED: two-component response regulator ARR11 [Vitis vinifera]
gi|297738324|emb|CBI27525.3| unnamed protein product [Vitis vinifera]
Length = 594
Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/196 (60%), Positives = 139/196 (70%), Gaps = 23/196 (11%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
+D FPAGLRVLVVDDDP WL+ILEKML+KCLYEVT C A AL++LR K+GYDIVISD
Sbjct: 10 TDVFPAGLRVLVVDDDPTWLKILEKMLKKCLYEVTICGLARDALNLLRERKDGYDIVISD 69
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
V+MPDMDGFKL E VGLEMDLPVIMMSVDG T VMKGV HGAC+YLLKPIR+KELRNIW
Sbjct: 70 VNMPDMDGFKLLELVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIW 129
Query: 131 QHVAQQP--------------------KPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKR 170
QHV ++ E+SDD Y V+ G+ + +RKD E + + R
Sbjct: 130 QHVFRKKINEVRDIESHESIDDFQIMRNGPEQSDDGYLVS-GDPTSVKKRKDTENKHDDR 188
Query: 171 D--DTSTLKKPRFLVS 184
D D S++KK R + S
Sbjct: 189 DHCDPSSVKKARVVWS 204
>gi|255584969|ref|XP_002533196.1| two-component sensor histidine kinase bacteria, putative [Ricinus
communis]
gi|223526994|gb|EEF29188.1| two-component sensor histidine kinase bacteria, putative [Ricinus
communis]
Length = 669
Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/205 (54%), Positives = 142/205 (69%), Gaps = 26/205 (12%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
A++ VAVSDQFPAGLRVLVVDDD LRILE+MLR+CLY VT C++A++AL++LR K
Sbjct: 29 ATADVAVSDQFPAGLRVLVVDDDTTCLRILEQMLRRCLYHVTTCSQAKVALNLLRERKGC 88
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+D+V+SDVHMPDMDGFKL E VGLEMDLPVIMMS DG T VM+G+ HGAC+YL+KPIR
Sbjct: 89 FDVVLSDVHMPDMDGFKLLEHVGLEMDLPVIMMSADGRTSAVMRGIRHGACDYLIKPIRE 148
Query: 124 KELRNIWQHVAQQ--------------------PKPFEESDDSYSVNQGN---WRTSNRR 160
+EL+NIWQHV ++ + E+++ + SVN+G + RR
Sbjct: 149 EELKNIWQHVVRKKWHENKEIEHSGSLEDNDRHKRGNEDAEYTSSVNEGTEGVLKGQKRR 208
Query: 161 ---KDEEEEAEKRDDTSTLKKPRFL 182
KDE++ DD ST KKPR +
Sbjct: 209 SNSKDEDDGEPDSDDPSTSKKPRVV 233
>gi|255547918|ref|XP_002515016.1| two-component sensor histidine kinase bacteria, putative [Ricinus
communis]
gi|223546067|gb|EEF47570.1| two-component sensor histidine kinase bacteria, putative [Ricinus
communis]
Length = 584
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/195 (58%), Positives = 133/195 (68%), Gaps = 21/195 (10%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
SD FPAGLRVLVVDDDP WL+ILEKML+KC YEVT C A AL +LR K+GYDIVISD
Sbjct: 10 SDAFPAGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLARDALYLLRERKDGYDIVISD 69
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
V+MPDMDGFKL E VGLEMDLPVIMMSVDG T VMKGV HGAC+YLLKPIR+KELRNIW
Sbjct: 70 VNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIW 129
Query: 131 QHVAQQP--------------------KPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKR 170
QHV ++ + SDD Y + + +RKD E + + +
Sbjct: 130 QHVFRKKIHEVRDIEILEGMESIQMARIGSDHSDDGYLFCGEDLTSVKKRKDIENKHDDK 189
Query: 171 D-DTSTLKKPRFLVS 184
D ++ST KK R + S
Sbjct: 190 DGESSTTKKARVVWS 204
>gi|298103728|emb|CBM42565.1| putative B-type response regulator 14 [Populus x canadensis]
Length = 594
Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 109/126 (86%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
+D FPAGLRVLVVDDDP WL+ILEKML+KC YEVT C A AL++LR K GYDIVISD
Sbjct: 11 NDSFPAGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLARDALNLLRERKGGYDIVISD 70
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
V+MPDMDGFKL EQVGLEMDLPVIMMSVDG T VMKGV HGAC+YLLKPIR+KELRNIW
Sbjct: 71 VYMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIW 130
Query: 131 QHVAQQ 136
QHV ++
Sbjct: 131 QHVFRK 136
>gi|356569201|ref|XP_003552793.1| PREDICTED: two-component response regulator ARR11-like [Glycine
max]
Length = 557
Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/190 (59%), Positives = 133/190 (70%), Gaps = 19/190 (10%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FPAGLRVLVVDDDP WL+ILEKML+KC YEVT C A AL +LR K+GYDIVISDV+M
Sbjct: 13 FPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNM 72
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGFKL E VGLEMDLPVIMMSVDG T VMKGV HGAC+YLLKPIR+KELRNIWQHV
Sbjct: 73 PDMDGFKLLEHVGLEMDLPVIMMSVDGETSKVMKGVQHGACDYLLKPIRMKELRNIWQHV 132
Query: 134 -------AQQPKPFEE----------SDDSYSVNQGNWRTSNRRKDEEEEAEKRD--DTS 174
A++ + FE SDD + +S +RKD + + + ++ D S
Sbjct: 133 FRKKIHEAKEFESFESIHLMRNGSELSDDGNLFAVEDVTSSKKRKDADSKHDDKECLDPS 192
Query: 175 TLKKPRFLVS 184
+ KK R + S
Sbjct: 193 STKKARVVWS 202
>gi|356510875|ref|XP_003524159.1| PREDICTED: two-component response regulator ARR11-like [Glycine
max]
Length = 584
Score = 208 bits (529), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 100/122 (81%), Positives = 105/122 (86%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
D FPAGLRVLVVDDDP WLRILEKML+KCLYEVT C A AL LR K+ YDIVISDV
Sbjct: 12 DAFPAGLRVLVVDDDPTWLRILEKMLKKCLYEVTTCCLATEALKKLRERKDAYDIVISDV 71
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
+MPDMDGFKL EQVGLEMDLPVIMMSVDG T VMKGV HGAC+YLLKPIR+KELRNIWQ
Sbjct: 72 NMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQ 131
Query: 132 HV 133
HV
Sbjct: 132 HV 133
>gi|225456769|ref|XP_002274673.1| PREDICTED: two-component response regulator ARR11 [Vitis vinifera]
Length = 570
Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/197 (56%), Positives = 136/197 (69%), Gaps = 23/197 (11%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
++ FPAGLRVLVVDDDP WL+ILEKML+KC YEVT C A AL+MLR K+G+DIVISD
Sbjct: 10 TEAFPAGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLARDALNMLRERKDGFDIVISD 69
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
V+MPDMDGFKL E VGLEMDLPVIMMSVDG T VMKGV HGAC+YLLKP+R+KEL+NIW
Sbjct: 70 VNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPVRMKELKNIW 129
Query: 131 QHVAQQP-------KPFE-------------ESDDSYSVNQGNWRTSNRRKDEE---EEA 167
QHV ++ + +E E DD + +N G + +RKD E +
Sbjct: 130 QHVFRKKIHEGKDVESYECMREIQMIMSRSDEFDDGHQLNGGELGATRKRKDMENRRHDD 189
Query: 168 EKRDDTSTLKKPRFLVS 184
++ D S+ KK R + S
Sbjct: 190 QELVDPSSSKKARVVWS 206
>gi|297733626|emb|CBI14873.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 109/174 (62%), Positives = 127/174 (72%), Gaps = 7/174 (4%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
++ FPAGLRVLVVDDDP WL+ILEKML+KC YEVT C A AL+MLR K+G+DIVISD
Sbjct: 10 TEAFPAGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLARDALNMLRERKDGFDIVISD 69
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
V+MPDMDGFKL E VGLEMDLPVIMMSVDG T VMKGV HGAC+YLLKP+R+KEL+NIW
Sbjct: 70 VNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPVRMKELKNIW 129
Query: 131 QHVAQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKPRFLVS 184
QHV + K E D + NRR D++E D S+ KK R + S
Sbjct: 130 QHVFR--KKIHEGKD-LGATRKRKDMENRRHDDQELV----DPSSSKKARVVWS 176
>gi|298103724|emb|CBM42563.1| putative B-type response regulator 21 [Populus x canadensis]
Length = 563
Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 97/126 (76%), Positives = 107/126 (84%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
+D FPAGLRVLVVDDDP WL+ILEKML++C YEVT C A AL++LR K GYDIVISD
Sbjct: 10 NDSFPAGLRVLVVDDDPTWLKILEKMLKRCSYEVTTCGLARDALNLLRERKGGYDIVISD 69
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
V MPDMDGFKL E VGLEMDLPVIMMSVDG T VMKGV HGAC+YLLKPIR+KELRNIW
Sbjct: 70 VFMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIW 129
Query: 131 QHVAQQ 136
QHV ++
Sbjct: 130 QHVFRK 135
>gi|224110806|ref|XP_002315642.1| type-b response regulator [Populus trichocarpa]
gi|222864682|gb|EEF01813.1| type-b response regulator [Populus trichocarpa]
Length = 250
Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/126 (76%), Positives = 108/126 (85%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
+D FPAGLRVLVVDDDP WL+ILEKML++C YEVT C A AL++LR K GYDIVISD
Sbjct: 3 NDSFPAGLRVLVVDDDPTWLKILEKMLKRCSYEVTTCGLARDALNLLRERKGGYDIVISD 62
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
V+MPDMDGFKL E VGLEMDLPVIMMSVDG T VMKGV HGAC+YLLKPIR+KELRNIW
Sbjct: 63 VYMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIW 122
Query: 131 QHVAQQ 136
QHV ++
Sbjct: 123 QHVFRK 128
>gi|357463135|ref|XP_003601849.1| Response regulator [Medicago truncatula]
gi|355490897|gb|AES72100.1| Response regulator [Medicago truncatula]
Length = 570
Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/120 (80%), Positives = 104/120 (86%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FPAGLRVLVVDDDP WL+ILEKML+KC YEVT C A AL +LR K+GYDIVISDV+M
Sbjct: 13 FPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNM 72
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGFKL E VGLEMDLPVIMMSVDG T VMKGV HGAC+YLLKPIR+KELRNIWQHV
Sbjct: 73 PDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 132
>gi|359472591|ref|XP_002281291.2| PREDICTED: two-component response regulator ARR2-like [Vitis
vinifera]
Length = 643
Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/201 (52%), Positives = 139/201 (69%), Gaps = 26/201 (12%)
Query: 8 VAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIV 67
V VSDQFPAGLRVLVVDDD L+ILE+MLR+CLY VT C++A IAL++LR K +DIV
Sbjct: 23 VVVSDQFPAGLRVLVVDDDVTCLKILEQMLRRCLYHVTTCSQATIALNILREKKGCFDIV 82
Query: 68 ISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
+SDVHMPDMDG+KL E VGLEMDLPVIMMS DG T VM+G+ HGAC+YL+KPIR +EL+
Sbjct: 83 LSDVHMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMRGIRHGACDYLIKPIREEELK 142
Query: 128 NIWQHVAQQ--------------------PKPFEESDDSYSVNQGN---WRTSNRRKDEE 164
NIWQHV ++ + E+++ + SVN+G + +R+D +
Sbjct: 143 NIWQHVVRKKWNENKEHEHSGSLEDNDRHKRGGEDAEYASSVNEGAEGILKGQKKRRDSK 202
Query: 165 EEAE---KRDDTSTLKKPRFL 182
+E + + +D ST KKPR +
Sbjct: 203 DEDDGELENEDPSTSKKPRVV 223
>gi|356538109|ref|XP_003537547.1| PREDICTED: two-component response regulator ARR11-like [Glycine
max]
Length = 585
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/123 (78%), Positives = 106/123 (86%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FPAGLRVLVVDDDP WL+ILEKML+KC YEVT C A AL +LR K+GYDIVISDV+M
Sbjct: 13 FPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNM 72
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGFKL E VGLEMDLPVIMMSVDG T VMKGV HGAC+YLLKPIR+KELRNIWQHV
Sbjct: 73 PDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 132
Query: 134 AQQ 136
++
Sbjct: 133 LRK 135
>gi|449450407|ref|XP_004142954.1| PREDICTED: two-component response regulator ARR11-like [Cucumis
sativus]
gi|449494494|ref|XP_004159561.1| PREDICTED: two-component response regulator ARR11-like [Cucumis
sativus]
Length = 583
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/195 (59%), Positives = 134/195 (68%), Gaps = 21/195 (10%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
SD FP GLRVLVVDDDP WL+ILEKML+KC YEVT C A AL +LR K+GYDIVISD
Sbjct: 10 SDVFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISD 69
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
V+MPDMDGFKL E VGLEMDLPVIMMSVDG T VMKGV HGAC+YLLKPIR+KELRNIW
Sbjct: 70 VNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIW 129
Query: 131 QHV----AQQPKPFEESD------------DSYSVNQ---GNWRTSNRRKDEEEEAEKRD 171
QHV Q+ + E D D Y +Q G S R++ + ++ E +D
Sbjct: 130 QHVLRKKIQEGRDIEGHDVIEGIHILRNVADRYDDSQFLRGEEPFSVRKRKDIDKHEDKD 189
Query: 172 --DTSTLKKPRFLVS 184
DTS+ KK R + S
Sbjct: 190 FCDTSSTKKARVVWS 204
>gi|56784051|dbj|BAD82798.1| putative response regulator 11 [Oryza sativa Japonica Group]
Length = 586
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/123 (76%), Positives = 106/123 (86%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP GLRVLVVDDDP WL+ILEKMLRKC YEVT C A +ALD+LR KN +DIVISDV+M
Sbjct: 6 FPYGLRVLVVDDDPTWLKILEKMLRKCSYEVTTCGLARVALDILRERKNKFDIVISDVNM 65
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGFKL E +GLEMDLPVIMMS+DG T VMKGV HGAC+YLLKP+R+KELRNIWQHV
Sbjct: 66 PDMDGFKLLEHIGLEMDLPVIMMSIDGETSRVMKGVQHGACDYLLKPVRMKELRNIWQHV 125
Query: 134 AQQ 136
++
Sbjct: 126 YRK 128
>gi|118790785|tpd|FAA00259.1| TPA: response regulator [Oryza sativa Japonica Group]
gi|222619710|gb|EEE55842.1| hypothetical protein OsJ_04457 [Oryza sativa Japonica Group]
Length = 582
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/193 (55%), Positives = 130/193 (67%), Gaps = 22/193 (11%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP GLRVLVVDDDP WL+ILEKMLRKC YEVT C A +ALD+LR KN +DIVISDV+M
Sbjct: 6 FPYGLRVLVVDDDPTWLKILEKMLRKCSYEVTTCGLARVALDILRERKNKFDIVISDVNM 65
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGFKL E +GLEMDLPVIMMS+DG T VMKGV HGAC+YLLKP+R+KELRNIWQHV
Sbjct: 66 PDMDGFKLLEHIGLEMDLPVIMMSIDGETSRVMKGVQHGACDYLLKPVRMKELRNIWQHV 125
Query: 134 AQQP--------------------KPFEESDDSYSVNQGNWRTSNRRK--DEEEEAEKRD 171
++ FE D+ + + T +RK D++ ++
Sbjct: 126 YRKKMHEVKEIEGNDSCDDLQILRNSFEGLDEKSLFMRSDSDTMRKRKDVDKDHADQESS 185
Query: 172 DTSTLKKPRFLVS 184
D +T+KK R + S
Sbjct: 186 DGNTVKKARVVWS 198
>gi|218189558|gb|EEC71985.1| hypothetical protein OsI_04831 [Oryza sativa Indica Group]
Length = 582
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/193 (55%), Positives = 130/193 (67%), Gaps = 22/193 (11%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP GLRVLVVDDDP WL+ILEKMLRKC YEVT C A +ALD+LR KN +DIVISDV+M
Sbjct: 6 FPYGLRVLVVDDDPTWLKILEKMLRKCSYEVTTCGLARVALDILRERKNKFDIVISDVNM 65
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGFKL E +GLEMDLPVIMMS+DG T VMKGV HGAC+YLLKP+R+KELRNIWQHV
Sbjct: 66 PDMDGFKLLEHIGLEMDLPVIMMSIDGETSRVMKGVQHGACDYLLKPVRMKELRNIWQHV 125
Query: 134 AQQP--------------------KPFEESDDSYSVNQGNWRTSNRRK--DEEEEAEKRD 171
++ FE D+ + + T +RK D++ ++
Sbjct: 126 YRKKMHEVKEIEGNDSCDDLQILRNSFEGLDEKSLFMRSDSDTMRKRKDVDKDHADQESS 185
Query: 172 DTSTLKKPRFLVS 184
D +T+KK R + S
Sbjct: 186 DGNTVKKARVVWS 198
>gi|297737623|emb|CBI26824.3| unnamed protein product [Vitis vinifera]
Length = 428
Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 141/205 (68%), Gaps = 26/205 (12%)
Query: 6 SSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
+ V VSDQFPAGLRVLVVDDD L+ILE+MLR+CLY VT C++A IAL++LR K +D
Sbjct: 21 ADVVVSDQFPAGLRVLVVDDDVTCLKILEQMLRRCLYHVTTCSQATIALNILREKKGCFD 80
Query: 66 IVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
IV+SDVHMPDMDG+KL E VGLEMDLPVIMMS DG T VM+G+ HGAC+YL+KPIR +E
Sbjct: 81 IVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMRGIRHGACDYLIKPIREEE 140
Query: 126 LRNIWQHVAQQ--------------------PKPFEESDDSYSVNQGN---WRTSNRRKD 162
L+NIWQHV ++ + E+++ + SVN+G + +R+D
Sbjct: 141 LKNIWQHVVRKKWNENKEHEHSGSLEDNDRHKRGGEDAEYASSVNEGAEGILKGQKKRRD 200
Query: 163 EEEEAE---KRDDTSTLKKPRFLVS 184
++E + + +D ST KKPR + S
Sbjct: 201 SKDEDDGELENEDPSTSKKPRVVWS 225
>gi|388504468|gb|AFK40300.1| unknown [Medicago truncatula]
Length = 570
Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/120 (80%), Positives = 103/120 (85%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FPAGLRVLVVDDDP WL+ILEKML+KC YEVT C A AL +LR K+GYDIVISDV+M
Sbjct: 13 FPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNM 72
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGFKL VGLEMDLPVIMMSVDG T VMKGV HGAC+YLLKPIR+KELRNIWQHV
Sbjct: 73 PDMDGFKLLGHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 132
>gi|298103718|emb|CBM42560.1| putative B-type response regulator 15 [Populus x canadensis]
Length = 671
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/204 (51%), Positives = 136/204 (66%), Gaps = 25/204 (12%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
A + V VSDQFPAGLRVLVVDDD LR+LEKM R+CLY VT C++A AL +LR K
Sbjct: 24 AGADVIVSDQFPAGLRVLVVDDDITCLRLLEKMPRRCLYHVTTCSQATAALKLLRERKGC 83
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+D+V+SDVHMPDMDGFKL E VGLEMDLPVIMMS DG T VM+G++HGAC+YL+KPIR
Sbjct: 84 FDVVLSDVHMPDMDGFKLLELVGLEMDLPVIMMSADGRTSAVMRGISHGACDYLIKPIRE 143
Query: 124 KELRNIWQHV----------AQQPKPFEESD---------DSYSVNQG------NWRTSN 158
+EL+NIWQHV + FE++D ++ SV++G + +
Sbjct: 144 EELKNIWQHVIRKKWNENKEQEHSGSFEDNDRHKRGNDAENASSVSEGAEGVLKGQKKRS 203
Query: 159 RRKDEEEEAEKRDDTSTLKKPRFL 182
KDE++ + DD S +KPR +
Sbjct: 204 IAKDEDDAELENDDPSASRKPRVV 227
>gi|224099559|ref|XP_002311532.1| type-b response regulator [Populus trichocarpa]
gi|222851352|gb|EEE88899.1| type-b response regulator [Populus trichocarpa]
Length = 303
Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/200 (53%), Positives = 135/200 (67%), Gaps = 25/200 (12%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
VSDQFPAGLRVLVVDDD LR+LEKMLR+CLY VT C++A AL +LR K +D+V+S
Sbjct: 1 VSDQFPAGLRVLVVDDDITCLRLLEKMLRRCLYHVTTCSQATAALKLLRERKGCFDVVLS 60
Query: 70 DVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
DVHMPDMDGFKL E VGLEMDLPVIMMS DG T VM+G++HGAC+YL+KPIR +EL+NI
Sbjct: 61 DVHMPDMDGFKLLELVGLEMDLPVIMMSADGRTSAVMRGISHGACDYLIKPIREEELKNI 120
Query: 130 WQHV----------AQQPKPFEESD---------DSYSVNQG------NWRTSNRRKDEE 164
WQHV + FE++D ++ SV++G + + KDE+
Sbjct: 121 WQHVIRKKWNENKEQEHSGSFEDNDRHKRGNDAENASSVSEGAEGVLKGQKKRSIAKDED 180
Query: 165 EEAEKRDDTSTLKKPRFLVS 184
+ + DD S KKPR + S
Sbjct: 181 DAELENDDPSASKKPRVVWS 200
>gi|357126386|ref|XP_003564868.1| PREDICTED: uncharacterized protein LOC100824670 [Brachypodium
distachyon]
Length = 577
Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/193 (54%), Positives = 130/193 (67%), Gaps = 22/193 (11%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP GLRVLVVDDDP WL+ILEKMLRKC YEVT C A +AL++LR K+ +DIVISDV+M
Sbjct: 8 FPYGLRVLVVDDDPTWLKILEKMLRKCSYEVTTCGLARVALEILRERKSKFDIVISDVNM 67
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGFKL E +GLEMDLPVIMMS+DG T VMKGV HGAC+YLLKP+R+KELRNIWQHV
Sbjct: 68 PDMDGFKLLEHIGLEMDLPVIMMSIDGETSRVMKGVQHGACDYLLKPVRMKELRNIWQHV 127
Query: 134 AQQ--------------------PKPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKRD-- 171
++ FE D+ + T+ +RKD +++ +D
Sbjct: 128 YRKRMHEVKEIEGHDSCDDLQILRYGFEGFDEKGIFITADSDTTRKRKDLDKDHADQDSS 187
Query: 172 DTSTLKKPRFLVS 184
D +T KK R + S
Sbjct: 188 DGATAKKARVVWS 200
>gi|312283277|dbj|BAJ34504.1| unnamed protein product [Thellungiella halophila]
Length = 668
Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 109/128 (85%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
+V + FP+GLRVLVVDDDP L ILE+MLR CLYEVTKCNRAE+AL +LR +K+G+DIVI
Sbjct: 26 SVVEMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVI 85
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDVHMPDMDGFKL E VGLEMDLPVIMMS D V+KGVTHGA +YL+KP+R++ L+N
Sbjct: 86 SDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKN 145
Query: 129 IWQHVAQQ 136
IWQHV ++
Sbjct: 146 IWQHVVRK 153
>gi|449455539|ref|XP_004145510.1| PREDICTED: two-component response regulator ARR12-like [Cucumis
sativus]
Length = 688
Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/193 (53%), Positives = 133/193 (68%), Gaps = 21/193 (10%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDDP L ILE +LR+C Y VT N+A +AL +LR +KN +D+VISDV
Sbjct: 12 DQFPTGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAVMALKLLRENKNKFDVVISDV 71
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+S +G + VMKG+THGAC+YLLKP+RI+EL+NIWQ
Sbjct: 72 HMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 131
Query: 132 HVAQQPKPFEESDDSYSVNQG-------------NWRTSNRRKDE-------EEEAEKRD 171
HV ++ K F+ D S NQ N + + +RKD+ ++ + D
Sbjct: 132 HVIRR-KKFDPKDRMNSGNQDRPDSENGEESADPNGKFNKKRKDQNYNEDDDQDYGQDND 190
Query: 172 DTSTLKKPRFLVS 184
D+ST KKPR + S
Sbjct: 191 DSSTQKKPRVVWS 203
>gi|449485185|ref|XP_004157093.1| PREDICTED: LOW QUALITY PROTEIN: two-component response regulator
ARR12-like [Cucumis sativus]
Length = 688
Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/193 (53%), Positives = 133/193 (68%), Gaps = 21/193 (10%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDDP L ILE +LR+C Y VT N+A +AL +LR +KN +D+VISDV
Sbjct: 12 DQFPTGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAVMALKLLRENKNKFDVVISDV 71
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+S +G + VMKG+THGAC+YLLKP+RI+EL+NIWQ
Sbjct: 72 HMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 131
Query: 132 HVAQQPKPFEESDDSYSVNQG-------------NWRTSNRRKDE-------EEEAEKRD 171
HV ++ K F+ D S NQ N + + +RKD+ ++ + D
Sbjct: 132 HVIRR-KKFDPKDRMNSGNQDRPDSENGEESADPNGKFNXKRKDQNYNEDDDQDYGQDND 190
Query: 172 DTSTLKKPRFLVS 184
D+ST KKPR + S
Sbjct: 191 DSSTQKKPRVVWS 203
>gi|242059591|ref|XP_002458941.1| hypothetical protein SORBIDRAFT_03g043080 [Sorghum bicolor]
gi|241930916|gb|EES04061.1| hypothetical protein SORBIDRAFT_03g043080 [Sorghum bicolor]
Length = 579
Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 92/120 (76%), Positives = 103/120 (85%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP GLRVLVVDDDP WL+ILEKMLRKC YEVT C A +AL +LR +N +DIVISDV+M
Sbjct: 9 FPYGLRVLVVDDDPTWLKILEKMLRKCSYEVTTCGLASVALQILRERRNKFDIVISDVNM 68
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGFKL E +GLEMDLPVIMMS+DG T VMKGV HGAC+YLLKP+R+KELRNIWQHV
Sbjct: 69 PDMDGFKLLELIGLEMDLPVIMMSIDGETSRVMKGVQHGACDYLLKPVRMKELRNIWQHV 128
>gi|302783917|ref|XP_002973731.1| type B response regulator [Selaginella moellendorffii]
gi|300158769|gb|EFJ25391.1| type B response regulator [Selaginella moellendorffii]
Length = 705
Score = 198 bits (504), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 109/202 (53%), Positives = 133/202 (65%), Gaps = 21/202 (10%)
Query: 2 SPASSSVAV---SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLR 58
SP S+V+ DQFP G+RVLVVDDD L ILE MLR+C Y VT C +A AL +LR
Sbjct: 16 SPNLSTVSTDGSKDQFPVGMRVLVVDDDQTTLTILEAMLRRCRYNVTTCGKATTALALLR 75
Query: 59 MSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118
KN +D+VISDV+MPDMDGFKL E VGLEMDLPVIMMS DG +VMKG+THGAC+YLL
Sbjct: 76 EHKNDFDLVISDVYMPDMDGFKLLELVGLEMDLPVIMMSTDGDYNNVMKGITHGACDYLL 135
Query: 119 KPIRIKELRNIWQHVAQQPK----------PFE----ESDDSYSVNQGNWRTSNRRKDEE 164
KP+R++ELRNIWQH+ ++ K P E + V + S +RKD +
Sbjct: 136 KPVRMEELRNIWQHLVRKRKNEARETETLTPAEADKLKGGGGDDVEHLSSACSKKRKDVK 195
Query: 165 EEAEKRD----DTSTLKKPRFL 182
EE E D D S+LKKPR +
Sbjct: 196 EEDEGVDHDSEDPSSLKKPRVV 217
>gi|298103720|emb|CBM42561.1| putative B-type response regulator 16 [Populus x canadensis]
Length = 663
Score = 198 bits (503), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 106/205 (51%), Positives = 134/205 (65%), Gaps = 26/205 (12%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
A + + SDQFPAGLRVLVVDDD LR+LEKML +CLY VT C++A AL +LR K
Sbjct: 24 AGADLMFSDQFPAGLRVLVVDDDITCLRLLEKMLCRCLYNVTTCSQATAALKLLRERKGC 83
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+D+V+SDVHMPDMDGFKL E VGLEMDLPVIMMS DG T VM+G+ HGAC+YL+KPIR
Sbjct: 84 FDVVLSDVHMPDMDGFKLLELVGLEMDLPVIMMSADGRTSAVMRGIKHGACDYLIKPIRE 143
Query: 124 KELRNIWQHV----------AQQPKPFEESD----------DSYSVNQG------NWRTS 157
+EL+NIWQHV + FE++D ++ SVN+G +
Sbjct: 144 EELKNIWQHVIRKKWNENKEQEHSGSFEDNDWYKRGNDDTENASSVNEGAEGVLKGQKKR 203
Query: 158 NRRKDEEEEAEKRDDTSTLKKPRFL 182
N K+E++ + DD S KKPR +
Sbjct: 204 NIAKEEDDNELEIDDPSASKKPRVV 228
>gi|414879149|tpg|DAA56280.1| TPA: putative two-component response regulator family protein [Zea
mays]
Length = 584
Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/194 (56%), Positives = 132/194 (68%), Gaps = 24/194 (12%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP GLRVLVVDDDP WL+ILEKMLRKC YEVT C A +A+ +LR +N +DIVISDV+M
Sbjct: 9 FPYGLRVLVVDDDPTWLKILEKMLRKCSYEVTTCGLASVAIQILRERRNKFDIVISDVNM 68
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGFKL E +GLEMDLPVIMMS+DG T VMKGV HGAC+YLLKP+R+KELRNIWQHV
Sbjct: 69 PDMDGFKLLELIGLEMDLPVIMMSIDGETSRVMKGVQHGACDYLLKPVRMKELRNIWQHV 128
Query: 134 AQQPKPFE----ESDDSYSVNQ-----------------GNWRTSNRRKDEEEEAEKRD- 171
++ K E E +DSY Q + T +RKD ++ +D
Sbjct: 129 YRK-KMHEVKEIEGNDSYDDLQMFRNGVEGFDERDLFMRADSDTMRKRKDVNKDHADQDS 187
Query: 172 -DTSTLKKPRFLVS 184
D +T+KK R + S
Sbjct: 188 SDGATVKKARVVWS 201
>gi|226503033|ref|NP_001152300.1| two-component response regulator ARR11 [Zea mays]
gi|195654849|gb|ACG46892.1| two-component response regulator ARR11 [Zea mays]
Length = 584
Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/194 (56%), Positives = 132/194 (68%), Gaps = 24/194 (12%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP GLRVLVVDDDP WL+ILEKMLRKC YEVT C A +A+ +LR +N +DIVISDV+M
Sbjct: 9 FPYGLRVLVVDDDPTWLKILEKMLRKCSYEVTTCGLASVAIQILRERRNKFDIVISDVNM 68
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGFKL E +GLEMDLPVIMMS+DG T VMKGV HGAC+YLLKP+R+KELRNIWQHV
Sbjct: 69 PDMDGFKLLELIGLEMDLPVIMMSIDGETSRVMKGVQHGACDYLLKPVRMKELRNIWQHV 128
Query: 134 AQQPKPFE----ESDDSYSVNQ-----------------GNWRTSNRRKDEEEEAEKRD- 171
++ K E E +DSY Q + T +RKD ++ +D
Sbjct: 129 YRK-KMHEVKEIEGNDSYDDLQMFRNGVEGFDERDLFMRADSDTMRKRKDVNKDHADQDS 187
Query: 172 -DTSTLKKPRFLVS 184
D +T+KK R + S
Sbjct: 188 SDGATVKKARVVWS 201
>gi|224111430|ref|XP_002315852.1| type-b response regulator [Populus trichocarpa]
gi|222864892|gb|EEF02023.1| type-b response regulator [Populus trichocarpa]
Length = 663
Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/205 (51%), Positives = 134/205 (65%), Gaps = 26/205 (12%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
A + + SDQFPAGLRVLVVDDD LR+LEKML +CLY VT C++A AL +LR K
Sbjct: 24 AGADLMFSDQFPAGLRVLVVDDDITCLRLLEKMLCRCLYNVTTCSQATAALKLLRERKGC 83
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+D+V+SDVHMPDMDGFKL E VGLEMDLPVIMMS DG T VM+G+ HGAC+YL+KPIR
Sbjct: 84 FDVVLSDVHMPDMDGFKLLELVGLEMDLPVIMMSADGRTSAVMRGIRHGACDYLIKPIRE 143
Query: 124 KELRNIWQHV----------AQQPKPFEESD----------DSYSVNQG------NWRTS 157
+EL+NIWQHV + FE++D ++ SVN+G +
Sbjct: 144 EELKNIWQHVIRKKWNENKEQEHSGSFEDNDWYKRGNDDTENASSVNEGAEGVLKGQKKR 203
Query: 158 NRRKDEEEEAEKRDDTSTLKKPRFL 182
N K+E++ + DD S KKPR +
Sbjct: 204 NIAKEEDDNELEIDDPSASKKPRVV 228
>gi|326515596|dbj|BAK07044.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 139/212 (65%), Gaps = 35/212 (16%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
A+++ DQFP G+RVL VDDDP+ L++LE +LR+C Y VT N+A IAL MLR +++
Sbjct: 10 AAAAATCRDQFPVGMRVLAVDDDPVCLKVLETLLRRCQYHVTATNQAIIALRMLRENRDM 69
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+D+VISDVHMPDMDGFKL E VGLEMDLPVIM+SV+G T+ VMKG+THGAC+YLLKP+RI
Sbjct: 70 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSVNGETKTVMKGITHGACDYLLKPVRI 129
Query: 124 KELRNIWQHVAQQ-----------------PKPFEESDDSY-------SVNQGNWRTSNR 159
+EL+NIWQHV ++ P +SD Y SV G R + +
Sbjct: 130 EELKNIWQHVVRRKFSTRDSLNADMYEECNKPPSSDSDYLYDQVKCGSSVQSG--RPNKK 187
Query: 160 RKD---EEEE------AEKRDDTSTLKKPRFL 182
RK+ EEE+ + DD S K+PR +
Sbjct: 188 RKEYHSEEEDEDGDSSGQDNDDPSAPKRPRVV 219
>gi|242092234|ref|XP_002436607.1| hypothetical protein SORBIDRAFT_10g005580 [Sorghum bicolor]
gi|241914830|gb|EER87974.1| hypothetical protein SORBIDRAFT_10g005580 [Sorghum bicolor]
Length = 659
Score = 195 bits (496), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 87/125 (69%), Positives = 107/125 (85%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDDP+ L++LE +LR+C Y VT N+A AL MLR +++ YD+VISDV
Sbjct: 14 DQFPVGMRVLAVDDDPVCLKVLETLLRRCQYHVTTTNQAITALKMLRENRDTYDLVISDV 73
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+SV+G T+ VMKG+THGAC+YLLKP+RI+ELRNIWQ
Sbjct: 74 HMPDMDGFKLLELVGLEMDLPVIMLSVNGETKSVMKGITHGACDYLLKPVRIEELRNIWQ 133
Query: 132 HVAQQ 136
HV ++
Sbjct: 134 HVVRR 138
>gi|343407540|gb|AEM23771.1| RRB1 type-b response regulator [Nicotiana tabacum]
Length = 654
Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/205 (49%), Positives = 133/205 (64%), Gaps = 26/205 (12%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
A+ +D FP GLRVLVVDDD + LRILE+MLRKC Y VT C +A +AL++LR +
Sbjct: 9 ATCKSEATDTFPVGLRVLVVDDDIVCLRILEQMLRKCKYSVTTCTQATVALNLLRERRGS 68
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+D+V+SDVHMPDMDGFKL E VGLEMDLP+IMMS DG T VM+GV HGAC+YL+KPIR
Sbjct: 69 FDVVLSDVHMPDMDGFKLLELVGLEMDLPIIMMSGDGRTNLVMRGVQHGACDYLIKPIRD 128
Query: 124 KELRNIWQHVAQQPKPFEES-------DDSYSVNQGN----------------WRTSNRR 160
+EL+NIWQHV ++ F + DD+ +GN + ++
Sbjct: 129 EELKNIWQHVVRKKCSFSKEPEYSGSLDDNDRHKRGNDDAECASSVIEGADRVLKPQKKK 188
Query: 161 KDEEEEAE---KRDDTSTLKKPRFL 182
+D +EE E + DD +T KKPR +
Sbjct: 189 RDAKEEDETEMENDDPTTAKKPRVV 213
>gi|242066838|ref|XP_002454708.1| hypothetical protein SORBIDRAFT_04g035980 [Sorghum bicolor]
gi|241934539|gb|EES07684.1| hypothetical protein SORBIDRAFT_04g035980 [Sorghum bicolor]
Length = 675
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 109/127 (85%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
V DQFP G+RVL VDDDP+ L++LE +LR+C Y VT N+A +AL MLR +++ +D+VIS
Sbjct: 13 VRDQFPVGMRVLAVDDDPVCLKVLENLLRRCQYRVTTTNQAVVALRMLRQNRDLFDLVIS 72
Query: 70 DVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
DVHMPDMDGFKL E VGLEMDLPVIM+SV+G T+ VMKG+THGAC+YLLKP+R++ELRNI
Sbjct: 73 DVHMPDMDGFKLLELVGLEMDLPVIMLSVNGETKTVMKGITHGACDYLLKPVRLEELRNI 132
Query: 130 WQHVAQQ 136
WQHV ++
Sbjct: 133 WQHVVRR 139
>gi|357137423|ref|XP_003570300.1| PREDICTED: two-component response regulator ARR12-like
[Brachypodium distachyon]
Length = 671
Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/202 (51%), Positives = 133/202 (65%), Gaps = 31/202 (15%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDDP+ L++LE +LR+C Y VT N+A IAL MLR +++ +D+VISDV
Sbjct: 15 DQFPVGMRVLAVDDDPVCLKVLETLLRRCQYHVTATNQAVIALRMLRENRDMFDLVISDV 74
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+S +G T+ VMKG+THGAC+YLLKP+RI+ELRNIWQ
Sbjct: 75 HMPDMDGFKLLELVGLEMDLPVIMLSGNGETKTVMKGITHGACDYLLKPVRIEELRNIWQ 134
Query: 132 HVAQQP---------KPFEE------SDDSYSVNQ-------GNWRTSNRRKD------- 162
HV ++ +EE +D Y +Q N R + +RKD
Sbjct: 135 HVVRRKFSTPDYVNLDTYEECNKPPNADSGYVYSQVTCGSPDQNGRPNKKRKDYHSEEEG 194
Query: 163 --EEEEAEKRDDTSTLKKPRFL 182
EE + DD S K+PR +
Sbjct: 195 EDEESNGQDDDDPSAPKRPRVV 216
>gi|125538347|gb|EAY84742.1| hypothetical protein OsI_06112 [Oryza sativa Indica Group]
Length = 626
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 128/198 (64%), Gaps = 26/198 (13%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDDP L+ILE +L +C Y VT +A AL +LR +K+ +D+VISDV
Sbjct: 23 DQFPVGMRVLAVDDDPTCLKILENLLLRCQYHVTTTGQAATALKLLRENKDQFDLVISDV 82
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+S +G TQ VMKG+THGAC+YLLKP+R+++LR IWQ
Sbjct: 83 HMPDMDGFKLLELVGLEMDLPVIMLSANGETQTVMKGITHGACDYLLKPVRLEQLRTIWQ 142
Query: 132 HV-----------------AQQPKPFEESDDSYSVNQGNWRTSNRRKDE--------EEE 166
HV Q+ + +S N+ N R S + +DE +E
Sbjct: 143 HVIRRKNCDAKNRGNDDDAGQKAQGMNNEGESIGANR-NKRQSRKSRDENGDDGDDSDEN 201
Query: 167 AEKRDDTSTLKKPRFLVS 184
+ + D+ST KKPR + S
Sbjct: 202 SNENGDSSTQKKPRVVWS 219
>gi|413939317|gb|AFW73868.1| putative two-component response regulator family protein [Zea mays]
Length = 676
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 133/206 (64%), Gaps = 35/206 (16%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
V DQFP G+RVL VDDDP+ L++LE +LR+C Y VT N+A +AL MLR +++ +D+VIS
Sbjct: 13 VRDQFPVGMRVLAVDDDPVCLKVLENLLRRCQYHVTTTNQAVVALSMLRQNRDLFDLVIS 72
Query: 70 DVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
DVHMPDMDGFKL E VGLEMDLPVIM+SV+G T+ VMKG+THGAC+YLLKP+R++ELRNI
Sbjct: 73 DVHMPDMDGFKLLELVGLEMDLPVIMLSVNGETKTVMKGITHGACDYLLKPVRLEELRNI 132
Query: 130 WQHVAQQPKPFEESD----DSY----------------SVNQG----NWRTSNRRKD--- 162
WQHV + + F D D Y + G + R S +RK+
Sbjct: 133 WQHVVR--RKFSNCDRANNDGYEECNRPSNADFDLAHSQITAGPPDQSGRPSKKRKEYHS 190
Query: 163 ------EEEEAEKRDDTSTLKKPRFL 182
EE + DD S KKPR +
Sbjct: 191 EEEDEGEESNGQDNDDPSAPKKPRVV 216
>gi|218191747|gb|EEC74174.1| hypothetical protein OsI_09283 [Oryza sativa Indica Group]
Length = 688
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/201 (52%), Positives = 134/201 (66%), Gaps = 30/201 (14%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDDP+ L++LE +L +C Y VT N+A IAL MLR +++ +D+VISDV
Sbjct: 18 DQFPVGMRVLAVDDDPVCLKVLETLLLRCQYHVTTTNQAAIALKMLRENRDMFDLVISDV 77
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+SV+G T+ V+KG+THGAC+YLLKP+RI+ELRNIWQ
Sbjct: 78 HMPDMDGFKLLELVGLEMDLPVIMLSVNGETKTVLKGITHGACDYLLKPVRIEELRNIWQ 137
Query: 132 HVAQQ-----------------PKPFEESDDSYS-VNQG----NWRTSNRRK----DEEE 165
HV ++ P +SD + V G + R S +RK +EE+
Sbjct: 138 HVIRRKFSTRDRANLDFYEECNKPPNADSDHVHGHVTCGSPDQSGRPSKKRKEYCSEEED 197
Query: 166 EAEKR----DDTSTLKKPRFL 182
E E DD S KKPR +
Sbjct: 198 EGEVNTQDIDDPSAPKKPRVV 218
>gi|218197710|gb|EEC80137.1| hypothetical protein OsI_21925 [Oryza sativa Indica Group]
Length = 696
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 133/202 (65%), Gaps = 31/202 (15%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDDP+ L++LE +LR+C Y VT N+A AL +LR +++ +D+VISDV
Sbjct: 20 DQFPVGMRVLAVDDDPVCLKVLETLLRRCQYHVTSTNQAITALKLLRENRDMFDLVISDV 79
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+SV+G T+ VMKG+THGAC+YLLKP+RI+ELRNIWQ
Sbjct: 80 HMPDMDGFKLLELVGLEMDLPVIMLSVNGETKTVMKGITHGACDYLLKPVRIEELRNIWQ 139
Query: 132 HVAQ------------------QPKPFEESDDSYSVNQG----NWRTSNRRKD------- 162
HV + +P+ + Y G N R+S +RK+
Sbjct: 140 HVVRRKFGNRERNNLDFSKECNKPQSADTDHGPYQPTCGSSDQNGRSSRKRKELHGEDDD 199
Query: 163 --EEEEAEKRDDTSTLKKPRFL 182
++ + ++ D+ S KKPR +
Sbjct: 200 EGDDNDYQENDEPSAAKKPRVV 221
>gi|115466774|ref|NP_001056986.1| Os06g0183100 [Oryza sativa Japonica Group]
gi|55771374|dbj|BAD72541.1| putative response regulator 9 [Oryza sativa Japonica Group]
gi|113595026|dbj|BAF18900.1| Os06g0183100 [Oryza sativa Japonica Group]
gi|118790746|tpd|FAA00255.1| TPA: response regulator [Oryza sativa Japonica Group]
gi|215736874|dbj|BAG95803.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222635081|gb|EEE65213.1| hypothetical protein OsJ_20357 [Oryza sativa Japonica Group]
Length = 696
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 133/202 (65%), Gaps = 31/202 (15%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDDP+ L++LE +LR+C Y VT N+A AL +LR +++ +D+VISDV
Sbjct: 20 DQFPVGMRVLAVDDDPVCLKVLETLLRRCQYHVTSTNQAITALKLLRENRDMFDLVISDV 79
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+SV+G T+ VMKG+THGAC+YLLKP+RI+ELRNIWQ
Sbjct: 80 HMPDMDGFKLLELVGLEMDLPVIMLSVNGETKTVMKGITHGACDYLLKPVRIEELRNIWQ 139
Query: 132 HVAQ------------------QPKPFEESDDSYSVNQG----NWRTSNRRKD------- 162
HV + +P+ + Y G N R+S +RK+
Sbjct: 140 HVVRRKFGNRERNNLDFSKECNKPQSADTDHGPYQPTCGSSDQNGRSSRKRKELHGEDDD 199
Query: 163 --EEEEAEKRDDTSTLKKPRFL 182
++ + ++ D+ S KKPR +
Sbjct: 200 EGDDNDYQENDEPSAAKKPRVV 221
>gi|115449219|ref|NP_001048389.1| Os02g0796500 [Oryza sativa Japonica Group]
gi|47497030|dbj|BAD19083.1| putative response regulator 9 [Oryza sativa Japonica Group]
gi|47497239|dbj|BAD19284.1| putative response regulator 9 [Oryza sativa Japonica Group]
gi|113537920|dbj|BAF10303.1| Os02g0796500 [Oryza sativa Japonica Group]
gi|118790756|tpd|FAA00256.1| TPA: response regulator [Oryza sativa Japonica Group]
gi|215704573|dbj|BAG94206.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767879|dbj|BAH00108.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623845|gb|EEE57977.1| hypothetical protein OsJ_08721 [Oryza sativa Japonica Group]
Length = 688
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/201 (52%), Positives = 134/201 (66%), Gaps = 30/201 (14%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDDP+ L++LE +L +C Y VT N+A IAL MLR +++ +D+VISDV
Sbjct: 18 DQFPVGMRVLAVDDDPVCLKVLETLLLRCQYHVTTTNQAAIALKMLRENRDMFDLVISDV 77
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+SV+G T+ V+KG+THGAC+YLLKP+RI+ELRNIWQ
Sbjct: 78 HMPDMDGFKLLELVGLEMDLPVIMLSVNGETKTVLKGITHGACDYLLKPVRIEELRNIWQ 137
Query: 132 HVAQQ-----------------PKPFEESDDSYS-VNQG----NWRTSNRRK----DEEE 165
HV ++ P +SD + V G + R S +RK +EE+
Sbjct: 138 HVIRRKFSTRDRANLDFYEECNKPPNADSDHVHGHVTCGSPDQSGRPSKKRKEYCSEEED 197
Query: 166 EAEKR----DDTSTLKKPRFL 182
E E DD S KKPR +
Sbjct: 198 EGEVNTQDIDDPSAPKKPRVV 218
>gi|168002194|ref|XP_001753799.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695206|gb|EDQ81551.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 311
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/208 (52%), Positives = 130/208 (62%), Gaps = 35/208 (16%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
D FPAGLRVLVVDD+P+ L +LEKML C Y VT C RA AL +LR + +D+VISDV
Sbjct: 44 DAFPAGLRVLVVDDEPVTLMVLEKMLTNCSYRVTTCGRATDALCLLREDIDKFDLVISDV 103
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
+MPDMDGFKL E VGLEMDLPVIMMS +G T VMKG+THGAC+YLLKP+R KELRNIWQ
Sbjct: 104 NMPDMDGFKLLELVGLEMDLPVIMMSGNGETSAVMKGITHGACDYLLKPVRQKELRNIWQ 163
Query: 132 HV----------AQQPKPFEE------------------SDDSYSVNQGNWRTSNRR--- 160
HV A++ K EE S + GNWR +
Sbjct: 164 HVVRKRRQDVKIARETKSVEEGGVCVREKRTGPDDVDYTSSATGDTGDGNWRKKRKGENQ 223
Query: 161 --KDEEEE--AEKRDDTSTLKKPRFLVS 184
KDE EE ++ DD ST+KKPR + S
Sbjct: 224 TFKDETEEDVEQENDDPSTMKKPRVVWS 251
>gi|297841471|ref|XP_002888617.1| hypothetical protein ARALYDRAFT_894522 [Arabidopsis lyrata subsp.
lyrata]
gi|297334458|gb|EFH64876.1| hypothetical protein ARALYDRAFT_894522 [Arabidopsis lyrata subsp.
lyrata]
Length = 529
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/167 (62%), Positives = 118/167 (70%), Gaps = 8/167 (4%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P GLRVLVVDDDP WL+ILEKML+KC YEVT C A AL +LR K+GYDIVISDV+MP
Sbjct: 8 PVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMP 67
Query: 75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
DMDGFKL E VGLE+DLPVIMMSVDG T VMKGV HGAC+YLLKPIR+KEL+ IWQHV
Sbjct: 68 DMDGFKLLEHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVL 127
Query: 135 QQPKPFEESDDSYSVNQ---GNWRTSNRRKDEEEEAEKRDDTSTLKK 178
+ K +E D G+W T R DE +D S KK
Sbjct: 128 R--KKLQEVRDIEGCGYEGGGDWIT---RYDEAHFLGGGEDVSFGKK 169
>gi|7576358|dbj|BAA94549.1| response regulator 11 [Arabidopsis thaliana]
Length = 457
Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/122 (75%), Positives = 103/122 (84%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P GLRVLVVDDDP WL+ILEKML+KC YEVT C A AL +LR K+GYDIVISDV+MP
Sbjct: 8 PVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMP 67
Query: 75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
DMDGFKL E VGLE+DLPVIMMSVDG T VMKGV HGAC+YLLKPIR+KEL+ IWQHV
Sbjct: 68 DMDGFKLLEHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVL 127
Query: 135 QQ 136
++
Sbjct: 128 RK 129
>gi|15220515|ref|NP_176938.1| two-component response regulator ARR11 [Arabidopsis thaliana]
gi|50400646|sp|Q9FXD6.1|ARR11_ARATH RecName: Full=Two-component response regulator ARR11; AltName:
Full=Receiver-like protein 3
gi|11072012|gb|AAG28891.1|AC008113_7 F12A21.15 [Arabidopsis thaliana]
gi|31711702|gb|AAP68207.1| At1g67710 [Arabidopsis thaliana]
gi|110736401|dbj|BAF00169.1| response regulator 11 [Arabidopsis thaliana]
gi|332196565|gb|AEE34686.1| two-component response regulator ARR11 [Arabidopsis thaliana]
Length = 521
Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 92/122 (75%), Positives = 103/122 (84%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P GLRVLVVDDDP WL+ILEKML+KC YEVT C A AL +LR K+GYDIVISDV+MP
Sbjct: 8 PVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMP 67
Query: 75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
DMDGFKL E VGLE+DLPVIMMSVDG T VMKGV HGAC+YLLKPIR+KEL+ IWQHV
Sbjct: 68 DMDGFKLLEHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVL 127
Query: 135 QQ 136
++
Sbjct: 128 RK 129
>gi|357125033|ref|XP_003564200.1| PREDICTED: two-component response regulator ARR12-like
[Brachypodium distachyon]
Length = 654
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/200 (51%), Positives = 135/200 (67%), Gaps = 31/200 (15%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDDP+ L++LE +LR+C Y VT N+A AL +LR +K+ +D+VISDV
Sbjct: 20 DQFPVGMRVLAVDDDPVCLKVLETLLRRCQYHVTATNQAITALKLLRENKDMFDLVISDV 79
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+SV+G T+ V+KG+THGAC+YLLKP+RI+ELRN+WQ
Sbjct: 80 HMPDMDGFKLLELVGLEMDLPVIMLSVNGETKTVLKGITHGACDYLLKPVRIEELRNVWQ 139
Query: 132 HVAQQP------------KPFEE--SDDSY-SVNQ---GNWRTSNRRKDEEEE------- 166
HV ++ K F + S DSY +NQ G+ S+R + +E
Sbjct: 140 HVVRRKFSNREPSNLDFCKEFSKPPSADSYHGLNQVTCGSSDQSSRACKKRKELHSEEED 199
Query: 167 ------AEKRDDTSTLKKPR 180
A++ D+ S K+PR
Sbjct: 200 EGEDNDAQENDEPSASKRPR 219
>gi|302794410|ref|XP_002978969.1| type B response regulator [Selaginella moellendorffii]
gi|300153287|gb|EFJ19926.1| type B response regulator [Selaginella moellendorffii]
Length = 580
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 131/216 (60%), Gaps = 48/216 (22%)
Query: 13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH 72
+FPAGLRVL VDDDP LRIL +MLRKC YEVT C RA AL +LR +K+ +D++ISDV
Sbjct: 19 KFPAGLRVLAVDDDPTCLRILAQMLRKCSYEVTMCTRATEALSLLRENKDRFDLMISDVF 78
Query: 73 MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
MPDMDGFKL E VGLEMDLPVIM S +G T VMKGV HGAC+YL+KP+R +ELRNIWQH
Sbjct: 79 MPDMDGFKLLEYVGLEMDLPVIMTSSNGETGIVMKGVIHGACDYLIKPVRTEELRNIWQH 138
Query: 133 VAQQPKPFEESDD---SYSVNQG------------------------------------- 152
V ++ + E+ D S SV G
Sbjct: 139 VVRKKR--NEARDVEASGSVEDGGERNHHHHHQQQQHHSSQQQRRASTIDEGEFNSDGGG 196
Query: 153 ----NWRTSNRRKDEEEEAEKR--DDTSTLKKPRFL 182
NW+ + RRKD+ +E + DD+STLKK R +
Sbjct: 197 GGDPNWKLAKRRKDDGDETAEHDNDDSSTLKKQRVV 232
>gi|302824731|ref|XP_002994006.1| hypothetical protein SELMODRAFT_187683 [Selaginella moellendorffii]
gi|300138168|gb|EFJ04946.1| hypothetical protein SELMODRAFT_187683 [Selaginella moellendorffii]
Length = 376
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 131/216 (60%), Gaps = 44/216 (20%)
Query: 13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH 72
+FPAGLRVL VDDDP LRIL +MLRKC YEVT C RA AL +LR +K+ +D++ISDV
Sbjct: 9 KFPAGLRVLAVDDDPTCLRILAQMLRKCSYEVTMCTRATEALSLLRENKDRFDLMISDVF 68
Query: 73 MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
MPDMDGFKL E VGLEMDLPVIM S +G T VMKGV HGAC+YL+KP+R +ELRNIWQH
Sbjct: 69 MPDMDGFKLLEYVGLEMDLPVIMTSSNGETGIVMKGVIHGACDYLIKPVRTEELRNIWQH 128
Query: 133 VAQQPK-PFEESDDSYSVNQG--------------------------------------- 152
V ++ + + + S SV G
Sbjct: 129 VVRKKRNEARDVEASGSVEDGGERNHHHHHQQQQHHSSQQQRRASTIDEGEFNSDGGGGG 188
Query: 153 --NWRTSNRRKDEEEEAEKR--DDTSTLKKPRFLVS 184
NW+ + RRKD+ +E + DD+STLKK R + S
Sbjct: 189 DPNWKLAKRRKDDGDETAEHDNDDSSTLKKQRVVWS 224
>gi|449443269|ref|XP_004139402.1| PREDICTED: two-component response regulator ARR12-like [Cucumis
sativus]
gi|449494037|ref|XP_004159429.1| PREDICTED: two-component response regulator ARR12-like [Cucumis
sativus]
Length = 699
Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/195 (52%), Positives = 129/195 (66%), Gaps = 26/195 (13%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
+QFP G+RVL VDDDPI L++LE +LRKC Y VT N+A AL MLR +KN +D+VISDV
Sbjct: 18 EQFPIGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENKNRFDLVISDV 77
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
+MPDMDGFKL E VGLEMDLPVIM+S T+ V KGV HGAC+YLLKP+RI+EL+NIWQ
Sbjct: 78 NMPDMDGFKLLELVGLEMDLPVIMLSAHSNTELVKKGVLHGACDYLLKPVRIEELKNIWQ 137
Query: 132 HVAQQPKPF----------EESDDSYSVNQG--------NWRTSNRRKDE--------EE 165
HV ++ KP + S V +G N ++ R+KD+ E+
Sbjct: 138 HVLRRKKPSVKNQNKSIIGNNTSQSVEVAKGCPPAVSTDNEKSGKRQKDQDDDEEGGEED 197
Query: 166 EAEKRDDTSTLKKPR 180
+ DD+ST KKPR
Sbjct: 198 STYENDDSSTQKKPR 212
>gi|109631194|gb|ABG35773.1| SRR391 [Striga asiatica]
Length = 541
Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 103/200 (51%), Positives = 135/200 (67%), Gaps = 27/200 (13%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
+ FP G+RVL VDDDPI L++L+ +LRKC Y V+ ++A +AL MLR +K+ +D+VISDV
Sbjct: 14 ENFPVGMRVLAVDDDPICLKLLDTLLRKCQYHVSTTSQARMALKMLRENKDRFDLVISDV 73
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL +QVGLEMDLPVIM+S + + VMKGVTHGAC+YL+KP+RI+ELRNIWQ
Sbjct: 74 HMPDMDGFKLLDQVGLEMDLPVIMLSANSDPKLVMKGVTHGACDYLVKPVRIEELRNIWQ 133
Query: 132 HV--------------AQQPKPFEESDDSYSVNQG---------NWRTSNR-RKDEEEEA 167
HV A Q KP + + G N +T+ R RKDEE+E+
Sbjct: 134 HVIRRRKSVTRNENKSADQAKPNQIASGEGGQLGGTIPGENADQNGKTNIRKRKDEEDES 193
Query: 168 E---KRDDTSTLKKPRFLVS 184
E + +D +T KKPR + S
Sbjct: 194 EDGNENEDPATQKKPRVVWS 213
>gi|115444635|ref|NP_001046097.1| Os02g0182100 [Oryza sativa Japonica Group]
gi|49388028|dbj|BAD25144.1| putative response regulator 9 [Oryza sativa Japonica Group]
gi|113535628|dbj|BAF08011.1| Os02g0182100 [Oryza sativa Japonica Group]
gi|118790764|tpd|FAA00257.1| TPA: response regulator [Oryza sativa Japonica Group]
gi|215713506|dbj|BAG94643.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222622313|gb|EEE56445.1| hypothetical protein OsJ_05635 [Oryza sativa Japonica Group]
Length = 626
Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats.
Identities = 101/197 (51%), Positives = 129/197 (65%), Gaps = 24/197 (12%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDDP L+ILE +L +C Y VT +A AL +LR +K+ +D+VISDV
Sbjct: 23 DQFPVGMRVLAVDDDPTCLKILENLLLRCQYHVTTTGQAATALKLLRENKDQFDLVISDV 82
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+S +G TQ VMKG+THGAC+YLLKP+R+++LR IWQ
Sbjct: 83 HMPDMDGFKLLELVGLEMDLPVIMLSANGETQTVMKGITHGACDYLLKPVRLEQLRTIWQ 142
Query: 132 HVAQQ----PKPFEESDDSYSVNQG------------NWRTSNRRKDE--------EEEA 167
HV ++ K DD+ QG N R S + +DE +E +
Sbjct: 143 HVIRRKNCDAKNRGNDDDAGQKAQGMNNEGESIGANRNKRQSRKSRDENGDDGDDSDENS 202
Query: 168 EKRDDTSTLKKPRFLVS 184
+ D+ST KKPR + S
Sbjct: 203 NENGDSSTQKKPRVVWS 219
>gi|326500594|dbj|BAJ94963.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats.
Identities = 97/191 (50%), Positives = 127/191 (66%), Gaps = 20/191 (10%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP G+RVL VDDDP L++LE +LR+C Y VT +A AL MLR +K+ +D+VISDVHM
Sbjct: 18 FPVGMRVLAVDDDPTCLKVLENLLRRCDYHVTTTGQAATALRMLRENKDQFDLVISDVHM 77
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGFKL E VGLEMDLPVIM+S +G TQ VMKG+THGAC+YLLKP+R+++L+ IWQHV
Sbjct: 78 PDMDGFKLLELVGLEMDLPVIMLSANGETQTVMKGITHGACDYLLKPVRLEQLKTIWQHV 137
Query: 134 AQQPKPFEESDDSYSVNQG------------NWRTSNRRKDE--------EEEAEKRDDT 173
++ SD+ + +G N R S R +DE +E + D+
Sbjct: 138 IRRNTKNRGSDNDDASQKGPNAEGENGGANRNKRQSRRDRDENGDDGDDSDENSNDNGDS 197
Query: 174 STLKKPRFLVS 184
S+ KKPR + S
Sbjct: 198 SSQKKPRVVWS 208
>gi|413952914|gb|AFW85563.1| putative two-component response regulator family protein [Zea mays]
Length = 669
Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 84/125 (67%), Positives = 106/125 (84%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDDP+ L++LE +LR+C Y V N+A AL +LR +++ +D+VISDV
Sbjct: 22 DQFPVGMRVLAVDDDPVCLKVLETLLRRCQYHVITTNQAITALKLLRENRDMFDLVISDV 81
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+SV+G T+ VMKG+THGAC+YLLKP+RI+ELRNIWQ
Sbjct: 82 HMPDMDGFKLLELVGLEMDLPVIMLSVNGETKSVMKGITHGACDYLLKPVRIEELRNIWQ 141
Query: 132 HVAQQ 136
HV ++
Sbjct: 142 HVVRR 146
>gi|356530639|ref|XP_003533888.1| PREDICTED: two-component response regulator ARR12-like [Glycine
max]
Length = 676
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 89/140 (63%), Positives = 113/140 (80%), Gaps = 1/140 (0%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
D+FP G+RVL VDDDPI L++LE +LRKC Y VT N+A AL MLR ++N +D+VISDV
Sbjct: 13 DRFPVGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAVEALTMLRENRNKFDLVISDV 72
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
+MPD+DGFKL E VGLEMDLPVIM+S G T+ VMKGVTHGAC+YLLKP+RI+EL+NIWQ
Sbjct: 73 NMPDIDGFKLLELVGLEMDLPVIMLSAHGDTKLVMKGVTHGACDYLLKPVRIEELKNIWQ 132
Query: 132 HVAQQPKPFEESDDSYSVNQ 151
HV ++ K F+ D + + N+
Sbjct: 133 HVVRR-KNFDSRDQNKASNE 151
>gi|3549639|emb|CAA06431.1| receiver-like protein 3 [Arabidopsis thaliana]
Length = 444
Score = 188 bits (478), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 91/122 (74%), Positives = 102/122 (83%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P GLRVLVVDDDP WL+ILEKML+KC YEVT C A AL +LR K+GYDIVISDV+MP
Sbjct: 8 PVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMP 67
Query: 75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
DMDGFKL E VGLE+DLPVIMMSVDG T VMKGV GAC+YLLKPIR+KEL+ IWQHV
Sbjct: 68 DMDGFKLLEHVGLELDLPVIMMSVDGETSRVMKGVHTGACDYLLKPIRMKELKIIWQHVL 127
Query: 135 QQ 136
++
Sbjct: 128 RK 129
>gi|356556600|ref|XP_003546612.1| PREDICTED: two-component response regulator ARR12-like [Glycine
max]
Length = 697
Score = 188 bits (478), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 89/140 (63%), Positives = 113/140 (80%), Gaps = 1/140 (0%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
D+FP G+RVL VDDDPI L++LE +LRKC Y VT N+A AL MLR ++N +D+VISDV
Sbjct: 13 DRFPVGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAVEALKMLRENRNKFDLVISDV 72
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
+MPD+DGFKL E VGLEMDLPVIM+S G T+ VMKGVTHGAC+YLLKP+RI+EL+NIWQ
Sbjct: 73 NMPDIDGFKLLELVGLEMDLPVIMLSAHGDTKLVMKGVTHGACDYLLKPVRIEELKNIWQ 132
Query: 132 HVAQQPKPFEESDDSYSVNQ 151
HV ++ K F+ D + + N+
Sbjct: 133 HVVRR-KNFDSRDQNKASNE 151
>gi|302770951|ref|XP_002968894.1| type B response regulator [Selaginella moellendorffii]
gi|300163399|gb|EFJ30010.1| type B response regulator [Selaginella moellendorffii]
Length = 602
Score = 188 bits (477), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 108/196 (55%), Positives = 129/196 (65%), Gaps = 22/196 (11%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
+ DQFPAGLRVLVVDDD L IL+KML +C Y+VT C A +AL MLR +K +D+V+S
Sbjct: 10 MGDQFPAGLRVLVVDDDRTCLAILKKMLLRCAYDVTTCGMARLALAMLRENKERFDVVLS 69
Query: 70 DVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
DV MPDMDGFKL E VGLEMDLPVIMMS +G T VMKG+ HGAC+YLLKPIRIKEL+NI
Sbjct: 70 DVCMPDMDGFKLLELVGLEMDLPVIMMSANGETSLVMKGIIHGACDYLLKPIRIKELKNI 129
Query: 130 WQHV-----------------AQQPKPFEESDDSYSVNQGNWRTSNRRK----DEEEEAE 168
WQHV Q+ KP +E D + S +RK D+EE
Sbjct: 130 WQHVFRRKRNILKDADGADHDRQKRKP-DEGDSMPAAGSAAAAGSKKRKEIKEDDEEFEL 188
Query: 169 KRDDTSTLKKPRFLVS 184
DD++TLKKPR + S
Sbjct: 189 DMDDSNTLKKPRVVWS 204
>gi|242041701|ref|XP_002468245.1| hypothetical protein SORBIDRAFT_01g042400 [Sorghum bicolor]
gi|241922099|gb|EER95243.1| hypothetical protein SORBIDRAFT_01g042400 [Sorghum bicolor]
Length = 686
Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/202 (48%), Positives = 131/202 (64%), Gaps = 30/202 (14%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
A +FP G++VLVVDDDP L +L++ML C Y+VT C +A AL MLR ++ G+D++I
Sbjct: 6 ARGGEFPVGMKVLVVDDDPTCLLVLKRMLLDCRYDVTTCPQATRALTMLRENRRGFDVII 65
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDVHMPDMDGF+L E VGLEMDLPVIMMS D T VMKG+ HGAC+YL+KP+R++EL+N
Sbjct: 66 SDVHMPDMDGFRLLELVGLEMDLPVIMMSADSRTDIVMKGIKHGACDYLIKPVRMEELKN 125
Query: 129 IWQHVAQQPKPFEESDD----------------------SYSVN---QGNWRTSNRRK-- 161
IWQHV + K F E+ D + S N G+W++ +++
Sbjct: 126 IWQHVVR--KKFNENKDHEHSGSLDDTDRNRPTNNDNEYASSANDGGDGSWKSQKKKREK 183
Query: 162 -DEEEEAEKRDDTSTLKKPRFL 182
D+E + E D +ST KKPR +
Sbjct: 184 EDDETDLENGDPSSTSKKPRVV 205
>gi|357113330|ref|XP_003558456.1| PREDICTED: uncharacterized protein LOC100821963 [Brachypodium
distachyon]
Length = 677
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/202 (48%), Positives = 136/202 (67%), Gaps = 26/202 (12%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
A +FP G++VLVVDDDP L +L++ML +C Y+ T C+++ AL MLR ++ G+D++I
Sbjct: 7 AGGGEFPVGMKVLVVDDDPTCLAVLKQMLVQCRYDATTCSQSTRALSMLRENRRGFDVII 66
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDVHMPDMDGF+L E VGLEMDLPVIMMS D T VMKG+ HGAC+YL+KP+R++EL+N
Sbjct: 67 SDVHMPDMDGFRLLELVGLEMDLPVIMMSADSRTDIVMKGIKHGACDYLIKPVRMEELKN 126
Query: 129 IWQHVAQQP----KPFEES--------------DDSY--SVNQG---NWRTSNRRKDEEE 165
IWQHV ++ K E S D+ Y S+N G +W++ +++D+EE
Sbjct: 127 IWQHVVRKKFSGNKEHEHSGSLDDTDRNRPANNDNEYASSINDGADDSWKSQKKKRDKEE 186
Query: 166 ---EAEKRDDTSTLKKPRFLVS 184
E E D +++ KKPR + S
Sbjct: 187 DDSELESGDPSNSSKKPRVVWS 208
>gi|242064244|ref|XP_002453411.1| hypothetical protein SORBIDRAFT_04g005580 [Sorghum bicolor]
gi|241933242|gb|EES06387.1| hypothetical protein SORBIDRAFT_04g005580 [Sorghum bicolor]
Length = 631
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/201 (50%), Positives = 128/201 (63%), Gaps = 25/201 (12%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
DQFP G+RVL VDDDP L++LEK+L+ C Y VT +A AL +LR K+ +D+VI
Sbjct: 19 GAKDQFPVGMRVLAVDDDPTCLKLLEKLLQHCQYHVTTTGQAATALKLLREKKDQFDLVI 78
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDVHMPDMDGFKL E VGLEMDLPVIM+S +G TQ VMKG+THGAC+YLLKP+RI++LR
Sbjct: 79 SDVHMPDMDGFKLLELVGLEMDLPVIMLSANGETQTVMKGITHGACDYLLKPVRIEQLRT 138
Query: 129 IWQHVAQQ-----PKPFEESDDSYSVNQ-----GNWRTSNRRK---------------DE 163
IWQHV ++ ++DDS Q G+ NR K D
Sbjct: 139 IWQHVVRRRSCDAKNNGNDNDDSGKKLQVVSAEGDNGGGNRNKRTSRRGRDDNGDDGDDS 198
Query: 164 EEEAEKRDDTSTLKKPRFLVS 184
+E + + D+ST KKPR + S
Sbjct: 199 DENSNENGDSSTQKKPRVVWS 219
>gi|302784610|ref|XP_002974077.1| hypothetical protein SELMODRAFT_173793 [Selaginella moellendorffii]
gi|300158409|gb|EFJ25032.1| hypothetical protein SELMODRAFT_173793 [Selaginella moellendorffii]
Length = 607
Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/196 (54%), Positives = 129/196 (65%), Gaps = 22/196 (11%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
+ DQFPAGLRVLVVDDD L IL+KML +C Y+VT C A +AL MLR +K +D+V+S
Sbjct: 10 MGDQFPAGLRVLVVDDDRTCLAILKKMLLRCAYDVTTCGMARLALAMLRENKERFDVVLS 69
Query: 70 DVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
DV MPDMDGFKL E VGLEMDLPVIMMS +G T VMKG+ HGAC+YLLKPIRIKEL+NI
Sbjct: 70 DVCMPDMDGFKLLELVGLEMDLPVIMMSANGETSLVMKGIIHGACDYLLKPIRIKELKNI 129
Query: 130 WQHV-----------------AQQPKPFEESDDSYSVNQGNWRTSNRRK----DEEEEAE 168
WQHV Q+ KP +E D + S +RK D++E
Sbjct: 130 WQHVFRRKRNILKDADGADHDRQKRKP-DEGDSMPAAGSAAAAGSKKRKEIKEDDDEFEL 188
Query: 169 KRDDTSTLKKPRFLVS 184
DD++TLKKPR + S
Sbjct: 189 DMDDSNTLKKPRVVWS 204
>gi|323388735|gb|ADX60172.1| ARR-B transcription factor [Zea mays]
Length = 631
Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/133 (63%), Positives = 103/133 (77%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
AS DQFP G+RVL VDDDP L+ILE +L +C Y VT +A AL +LR K+
Sbjct: 12 ASGGHGAKDQFPVGMRVLAVDDDPTCLKILENLLLRCQYHVTTTGQAATALKLLREKKDQ 71
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+D+VISDVHMPDMDGFKL E VGLEMDLPVIM+S +G TQ VMKG+THGAC+YLLKP+RI
Sbjct: 72 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGETQTVMKGITHGACDYLLKPVRI 131
Query: 124 KELRNIWQHVAQQ 136
++LR IWQHV ++
Sbjct: 132 EQLRTIWQHVVRR 144
>gi|162460694|ref|NP_001104864.1| response regulator 10 [Zea mays]
gi|15667625|dbj|BAB68269.1| response regulator 10 [Zea mays]
Length = 686
Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 134/206 (65%), Gaps = 30/206 (14%)
Query: 5 SSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY 64
+++ A +FP G++VLVVDDDP L +L++ML +C Y+VT C +A AL MLR ++ G+
Sbjct: 2 AAAEARGGEFPVGMKVLVVDDDPTCLVVLKRMLLECRYDVTTCPQATRALTMLRENRRGF 61
Query: 65 DIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIK 124
D++ISDVHMPDMDGF+L E VGLEMDLPVIMMS D T VM GV HGAC+YL+KP+R++
Sbjct: 62 DVIISDVHMPDMDGFRLLELVGLEMDLPVIMMSADSRTDIVMNGVKHGACDYLIKPVRME 121
Query: 125 ELRNIWQHVAQQPKPFEESDD----------------------SYSVN---QGNWRTSNR 159
EL+NIWQHV + K F E+ D + S N G+W++ +
Sbjct: 122 ELKNIWQHVIR--KKFNENKDHEHSGSLDDTDRNRPTNNDNEYASSANDGGDGSWKSQRK 179
Query: 160 RK---DEEEEAEKRDDTSTLKKPRFL 182
++ D+E + E D +ST KKPR +
Sbjct: 180 KREKEDDETDLENGDPSSTSKKPRVV 205
>gi|168015656|ref|XP_001760366.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688380|gb|EDQ74757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 262
Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/181 (55%), Positives = 130/181 (71%), Gaps = 11/181 (6%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
PAGL+VLVVDDD + L+ILE+MLR+C Y VT CN A AL MLR +++ +D+VISDV+MP
Sbjct: 12 PAGLKVLVVDDDNVILKILERMLRECKYAVTTCNSATKALAMLRENRSYFDLVISDVYMP 71
Query: 75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
DMDGFKL E +GLE+DLPVIMMS DG VM+G+ HGAC+YLLKP+R++ELRNIWQHV
Sbjct: 72 DMDGFKLLEAIGLELDLPVIMMSRDGEIDSVMRGIKHGACDYLLKPVRLEELRNIWQHVV 131
Query: 135 QQ-PKPF----EESD--DSYSVNQGNW---RTSNRRKDE-EEEAEKRDDTSTLKKPRFLV 183
++ P EES D Y +Q N TS +RK+ E+E + +D + LKK R +
Sbjct: 132 RKLVSPILVSKEESGELDEYPKHQDNADFDATSRKRKERLEDETQLVEDVNNLKKARIVW 191
Query: 184 S 184
S
Sbjct: 192 S 192
>gi|323388705|gb|ADX60157.1| ARR-B transcription factor [Zea mays]
Length = 631
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/133 (63%), Positives = 103/133 (77%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
AS DQFP G+RVL VDDDP L+ILE +L +C Y VT +A AL +LR K+
Sbjct: 12 ASGGHGAKDQFPVGMRVLAVDDDPTCLKILENLLLRCQYHVTTTGQAATALKLLREKKDQ 71
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+D+VISDVHMPDMDGFKL E VGLEMDLPVIM+S +G TQ VMKG+THGAC+YLLKP+RI
Sbjct: 72 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGETQTVMKGITHGACDYLLKPVRI 131
Query: 124 KELRNIWQHVAQQ 136
++LR IWQHV ++
Sbjct: 132 EQLRTIWQHVVRR 144
>gi|162460462|ref|NP_001104863.1| response regulator 9 [Zea mays]
gi|14189890|dbj|BAB55874.1| response regulator 9 [Zea mays]
Length = 631
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/133 (63%), Positives = 103/133 (77%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
AS DQFP G+RVL VDDDP L+ILE +L +C Y VT +A AL +LR K+
Sbjct: 12 ASGGHGAKDQFPVGMRVLAVDDDPTCLKILENLLLRCQYHVTTTGQAATALKLLREKKDQ 71
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+D+VISDVHMPDMDGFKL E VGLEMDLPVIM+S +G TQ VMKG+THGAC+YLLKP+RI
Sbjct: 72 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGETQTVMKGITHGACDYLLKPVRI 131
Query: 124 KELRNIWQHVAQQ 136
++LR IWQHV ++
Sbjct: 132 EQLRTIWQHVVRR 144
>gi|255636387|gb|ACU18532.1| unknown [Glycine max]
Length = 220
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/140 (63%), Positives = 113/140 (80%), Gaps = 1/140 (0%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
D+FP G+RVL VDDDPI L++LE +LRKC Y VT N+A AL MLR ++N +D+VISDV
Sbjct: 13 DRFPVGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAVEALTMLRENRNKFDLVISDV 72
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
+MPD+DGFKL E VGLEMDLPVIM+S G T+ VMKGVTHGAC+YLLKP+RI+EL+NIWQ
Sbjct: 73 NMPDIDGFKLLELVGLEMDLPVIMLSAHGDTKLVMKGVTHGACDYLLKPVRIEELKNIWQ 132
Query: 132 HVAQQPKPFEESDDSYSVNQ 151
HV ++ K F+ D + + N+
Sbjct: 133 HVVRR-KNFDSRDQNKASNE 151
>gi|223942343|gb|ACN25255.1| unknown [Zea mays]
gi|323388571|gb|ADX60090.1| ARR-B family member [Zea mays]
gi|323388695|gb|ADX60152.1| ARR-B transcription factor [Zea mays]
gi|413956503|gb|AFW89152.1| putative two-component response regulator family protein isoform 1
[Zea mays]
gi|413956504|gb|AFW89153.1| putative two-component response regulator family protein isoform 2
[Zea mays]
Length = 686
Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/206 (46%), Positives = 134/206 (65%), Gaps = 30/206 (14%)
Query: 5 SSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY 64
+++ A +FP G++VLVVDDDP L +L++ML +C Y+VT C +A AL MLR ++ G+
Sbjct: 2 AAAKARGGEFPVGMKVLVVDDDPTCLVVLKRMLLECRYDVTTCPQATRALTMLRENRRGF 61
Query: 65 DIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIK 124
D++ISDVHMPDMDGF+L E VGLEMDLPVIMMS D T VM G+ HGAC+YL+KP+R++
Sbjct: 62 DVIISDVHMPDMDGFRLLELVGLEMDLPVIMMSADSRTDIVMNGIKHGACDYLIKPVRME 121
Query: 125 ELRNIWQHVAQQPKPFEESDD----------------------SYSVN---QGNWRTSNR 159
EL+NIWQHV + K F E+ D + S N G+W++ +
Sbjct: 122 ELKNIWQHVIR--KKFNENKDHEHSGSLDDTDRNRPTNNDNEYASSANDGGDGSWKSQRK 179
Query: 160 RK---DEEEEAEKRDDTSTLKKPRFL 182
++ D+E + E D +ST KKPR +
Sbjct: 180 KREKEDDETDLENGDPSSTSKKPRVV 205
>gi|302788023|ref|XP_002975781.1| hypothetical protein SELMODRAFT_150746 [Selaginella moellendorffii]
gi|300156782|gb|EFJ23410.1| hypothetical protein SELMODRAFT_150746 [Selaginella moellendorffii]
Length = 660
Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 100/183 (54%), Positives = 122/183 (66%), Gaps = 18/183 (9%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVLVVDDD L ILE MLR+C Y VT C +A AL +LR KN +D+VISDV+MPDMD
Sbjct: 1 MRVLVVDDDQTTLTILEAMLRRCRYNVTTCGKATTALALLREHKNDFDLVISDVYMPDMD 60
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
GFKL E VGLEMDLPVIMMS DG +VMKG+THGAC+YLLKP+R++ELRNIWQH+ ++
Sbjct: 61 GFKLLELVGLEMDLPVIMMSTDGDYNNVMKGITHGACDYLLKPVRMEELRNIWQHLVRKR 120
Query: 138 K----------PFE----ESDDSYSVNQGNWRTSNRRKDEEEEAEKRD----DTSTLKKP 179
K P E + V + S +RKD +EE E D D S+LKKP
Sbjct: 121 KNEARETETLTPAEADKLKGGGGDDVEHLSSACSKKRKDVKEEDEGVDHDSEDPSSLKKP 180
Query: 180 RFL 182
R +
Sbjct: 181 RVV 183
>gi|168010903|ref|XP_001758143.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690599|gb|EDQ76965.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 239
Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 101/181 (55%), Positives = 131/181 (72%), Gaps = 11/181 (6%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
PAGL+VLVVDD+P+ L I+E+ML+ C Y VT CN A AL MLR ++N +D+VISDV+MP
Sbjct: 1 PAGLKVLVVDDEPLALMIVERMLQICQYTVTTCNSATKALAMLRENRNYFDLVISDVYMP 60
Query: 75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
DMDGFKL E +GLE+DLPVIMMS DG T VMKG+ HGAC+YLLKP+R+KEL NIWQHV
Sbjct: 61 DMDGFKLLEAIGLELDLPVIMMSGDGETDSVMKGIRHGACDYLLKPVRLKELINIWQHVV 120
Query: 135 QQ---PK--PFEESD--DSYSVNQGNW---RTSNRRKDEEEE-AEKRDDTSTLKKPRFLV 183
++ P+ P EES D + +Q N T+ +RK+ E+ A+ +D + LKK R +
Sbjct: 121 RKLVTPRDIPKEESGEWDEFPKHQDNADFDSTARKRKERSEDVAQLVEDVNNLKKARVVW 180
Query: 184 S 184
S
Sbjct: 181 S 181
>gi|312282885|dbj|BAJ34308.1| unnamed protein product [Thellungiella halophila]
Length = 380
Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 110/129 (85%)
Query: 8 VAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIV 67
+ +SDQFP+GLRVLVVDDD LRILE+ML + +Y+VT C++A++AL++LR K +D+V
Sbjct: 1 MTISDQFPSGLRVLVVDDDTSCLRILEQMLLRLMYQVTICSQADVALNILRERKGCFDLV 60
Query: 68 ISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
+SDVHMP M+G+KL +QVGLEMDLPVIMMSVDG T VMKG+ HGAC+YL+KPIR +EL+
Sbjct: 61 LSDVHMPGMNGYKLLQQVGLEMDLPVIMMSVDGRTTTVMKGINHGACDYLIKPIRPEELK 120
Query: 128 NIWQHVAQQ 136
NIWQHV ++
Sbjct: 121 NIWQHVVRR 129
>gi|15236580|ref|NP_194920.1| two-component response regulator ARR10 [Arabidopsis thaliana]
gi|38257358|sp|O49397.1|ARR10_ARATH RecName: Full=Two-component response regulator ARR10; AltName:
Full=Receiver-like protein 4
gi|2827643|emb|CAA16597.1| predicted protein [Arabidopsis thaliana]
gi|3549641|emb|CAA06432.1| receiver-like protein 4 [Arabidopsis thaliana]
gi|7270096|emb|CAB79910.1| predicted protein [Arabidopsis thaliana]
gi|27808620|gb|AAO24590.1| At4g31920 [Arabidopsis thaliana]
gi|110736270|dbj|BAF00105.1| predicted protein [Arabidopsis thaliana]
gi|332660579|gb|AEE85979.1| two-component response regulator ARR10 [Arabidopsis thaliana]
Length = 552
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 96/182 (52%), Positives = 126/182 (69%), Gaps = 8/182 (4%)
Query: 8 VAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIV 67
+ V DQFP G+RVL VDDD LRIL+ +L++C Y VT N+A+ AL++LR +KN +D+V
Sbjct: 7 IEVLDQFPVGMRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLV 66
Query: 68 ISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
ISDV MPDMDGFKL E VGLEMDLPVIM+S + VMKGV HGAC+YLLKP+RI+EL+
Sbjct: 67 ISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELK 126
Query: 128 NIWQHVAQQPKPFEESDDSYSVNQGNWRTSNRRKDEE-------EEAEKRDDTSTLKKPR 180
NIWQHV ++ +++ + S GN +NR++ E+ E DD + KKPR
Sbjct: 127 NIWQHVVRK-SKLKKNKSNVSNGSGNCDKANRKRKEQYEEEEEEERGNDNDDPTAQKKPR 185
Query: 181 FL 182
L
Sbjct: 186 VL 187
>gi|297735895|emb|CBI18671.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 122/174 (70%), Gaps = 9/174 (5%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
V D FP G+RVL VDDDP L +L+ +LR+C Y+VT N+A AL MLR +KN +D+VI
Sbjct: 15 GVKDPFPVGMRVLAVDDDPTCLMLLDGLLRRCQYQVTTTNQAITALKMLRENKNNFDLVI 74
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDV MPDMDGFKL E VGLEMDLPVIM+S + VM+G+THGAC+YLLKP+RI+EL+N
Sbjct: 75 SDVSMPDMDGFKLLELVGLEMDLPVIMLSSHSDPKLVMRGITHGACDYLLKPVRIEELKN 134
Query: 129 IWQHVAQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKPRFL 182
IWQHV ++ K + D + S +Q N + + E+ +D S+ KKPR +
Sbjct: 135 IWQHVIRR-KKIDSKDQNKSADQDNALHA--------DGEENEDPSSQKKPRVV 179
>gi|326488979|dbj|BAJ98101.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 684
Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 132/200 (66%), Gaps = 26/200 (13%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
DQFP G++VLVVDDD L +L++ML +C Y+ T C++A AL MLR ++ +D++ISD
Sbjct: 10 GDQFPVGMKVLVVDDDQTCLAVLKRMLIQCRYDATTCSQATRALAMLRENRGAFDVIISD 69
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
VHMPDMDGF+L E VGLEMDLPVIMMS D T VMKG+ HGAC+YL+KP+R++EL+NIW
Sbjct: 70 VHMPDMDGFRLLELVGLEMDLPVIMMSADSRTDLVMKGIKHGACDYLIKPVRMEELKNIW 129
Query: 131 QHVAQQP----KPFEES--------------DDSY--SVNQG---NWRTSNRRKDEEE-- 165
QHV ++ K E S D+ Y S N G +W++ +++D+EE
Sbjct: 130 QHVVRKKFGGNKEHEHSGSLDDTDRNRPTNNDNEYASSANDGAEDSWKSQKKKRDKEEDD 189
Query: 166 -EAEKRDDTSTLKKPRFLVS 184
E E D ++ KKPR + S
Sbjct: 190 SELESGDPSNNSKKPRVVWS 209
>gi|224102357|ref|XP_002312648.1| type-b response regulator [Populus trichocarpa]
gi|222852468|gb|EEE90015.1| type-b response regulator [Populus trichocarpa]
Length = 642
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/174 (56%), Positives = 109/174 (62%), Gaps = 48/174 (27%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
+D FPAGLRVLVVDDDP WL+ILEKML+KC YEVT C A AL++LR K GYDIVISD
Sbjct: 11 NDSFPAGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLARDALNLLRERKGGYDIVISD 70
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVI------------------------------------ 94
V+MPDMDGFKL EQVGLEMDLPVI
Sbjct: 71 VYMPDMDGFKLLEQVGLEMDLPVISRFFSLTLEFYFNANIFYLRIHIPMSCLHYIYIGIL 130
Query: 95 ------------MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
+MSVDG T VMKGV HGAC+YLLKPIR+KELRNIWQHV ++
Sbjct: 131 IQLLTSCACQLTVMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 184
>gi|357138369|ref|XP_003570765.1| PREDICTED: two-component response regulator ARR12-like
[Brachypodium distachyon]
Length = 615
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 96/191 (50%), Positives = 126/191 (65%), Gaps = 18/191 (9%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
D+FP G+RVL VDDDP L++LE +L +C Y VT +A AL MLR +K+ +D+VISDV
Sbjct: 15 DRFPVGMRVLAVDDDPTCLKVLESLLLRCDYHVTTTGQAATALRMLRENKDRFDLVISDV 74
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+S +G TQ VMKG+THGAC+YLLKP+R+++L+ IWQ
Sbjct: 75 HMPDMDGFKLLELVGLEMDLPVIMLSANGETQTVMKGITHGACDYLLKPVRLEQLKTIWQ 134
Query: 132 HVAQ---QPKPFEESDDSYSVNQG---------NWRTSNRRK------DEEEEAEKRDDT 173
HV + + + + D V G N R S R + D +E + + D
Sbjct: 135 HVVRRNTKTRGNDNDDAGQKVQNGDGENGGANRNKRQSRRDENGDDGDDSDENSNENADA 194
Query: 174 STLKKPRFLVS 184
S+ KKPR + S
Sbjct: 195 SSQKKPRVVWS 205
>gi|162460014|ref|NP_001104861.1| response regulator 8 [Zea mays]
gi|13661174|dbj|BAB41137.1| response regulator 8 [Zea mays]
gi|195656391|gb|ACG47663.1| two-component response regulator ARR1 [Zea mays]
Length = 684
Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 131/194 (67%), Gaps = 25/194 (12%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP G++VLVVDDDP L +L++ML +C Y+VT C +A AL MLR ++ G+D++ISDVHM
Sbjct: 11 FPVGMKVLVVDDDPTCLVVLKRMLLECRYDVTTCPQATRALTMLRENRRGFDVIISDVHM 70
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGF+L E VGLEMDLPVIMMS D T VMKG+ HGAC+YL+KP+R++EL+NIWQHV
Sbjct: 71 PDMDGFRLLELVGLEMDLPVIMMSADSRTDIVMKGIKHGACDYLIKPVRMEELKNIWQHV 130
Query: 134 AQQP----KPFEES--------------DDSYSVNQ-----GNWRTSNRRKDEEEEAE-- 168
++ K E S D+ Y+ + G+W++ +++++E++
Sbjct: 131 VRKKFNGNKDHEHSGSLDDTDRNRPTNNDNEYASSANDGGDGSWKSQKKKREKEDDETDL 190
Query: 169 KRDDTSTLKKPRFL 182
+ D ST KKPR +
Sbjct: 191 ESGDPSTSKKPRVV 204
>gi|356519365|ref|XP_003528343.1| PREDICTED: uncharacterized protein LOC100804937 [Glycine max]
Length = 633
Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/181 (50%), Positives = 125/181 (69%), Gaps = 10/181 (5%)
Query: 1 MSPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS 60
M+PA++ +FP GLRVLVVDDD L+I+E+M +C Y VT C A +AL++LR
Sbjct: 1 MAPAAA------EFPVGLRVLVVDDDATTLKIIEQMSIRCRYRVTTCTEATVALNLLRER 54
Query: 61 KNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
K +D+V+SDVHMPDMDG+KL E VGLEMDLPVIMMS D T VMKG+ HGAC+YL+KP
Sbjct: 55 KGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSGDSTTSAVMKGIRHGACDYLIKP 114
Query: 121 IRIKELRNIWQHVAQQP-KPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKP 179
+R +ELRNIWQHV ++ +E D+S S+ + N+R +++ E D + +K P
Sbjct: 115 VREEELRNIWQHVVRKFWNDSKEQDNSGSMEDSD---QNKRGNDDAEYTSVADAAVVKAP 171
Query: 180 R 180
+
Sbjct: 172 K 172
>gi|414865594|tpg|DAA44151.1| TPA: putative two-component response regulator family protein
isoform 1 [Zea mays]
gi|414865595|tpg|DAA44152.1| TPA: putative two-component response regulator family protein
isoform 2 [Zea mays]
gi|414865596|tpg|DAA44153.1| TPA: putative two-component response regulator family protein
isoform 3 [Zea mays]
Length = 684
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 131/194 (67%), Gaps = 25/194 (12%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP G++VLVVDDDP L +L++ML +C Y+VT C +A AL MLR ++ G+D++ISDVHM
Sbjct: 11 FPVGMKVLVVDDDPTCLVVLKRMLLECRYDVTTCPQATRALTMLRENRRGFDVIISDVHM 70
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGF+L E VGLEMDLPVIMMS D T VMKG+ HGAC+YL+KP+R++EL+NIWQHV
Sbjct: 71 PDMDGFRLLELVGLEMDLPVIMMSADSRTDIVMKGIKHGACDYLIKPVRMEELKNIWQHV 130
Query: 134 AQQP----KPFEES--------------DDSYSVNQ-----GNWRTSNRRKDEEEEAE-- 168
++ K E S D+ Y+ + G+W++ +++++E++
Sbjct: 131 VRKKFNGNKDHEHSGSLDDTDRNRPTNNDNEYASSANDGGDGSWKSQKKKREKEDDETDL 190
Query: 169 KRDDTSTLKKPRFL 182
+ D ST KKPR +
Sbjct: 191 ESGDPSTSKKPRVV 204
>gi|168004846|ref|XP_001755122.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693715|gb|EDQ80066.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 338
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 130/206 (63%), Gaps = 33/206 (16%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
D+FP G+RVLVVDD+P L ILE+ML +C Y VT C +A AL MLR +D+VISDV
Sbjct: 48 DEFPVGMRVLVVDDNPTCLMILEQMLVRCAYRVTTCGKATEALSMLREDIGKFDVVISDV 107
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
MPDMDGFKL E VGLEMDLPVIM+S +G T VMKG+THGAC+YLLKP+RI+ELRNIWQ
Sbjct: 108 DMPDMDGFKLLELVGLEMDLPVIMVSGNGETSAVMKGITHGACDYLLKPVRIEELRNIWQ 167
Query: 132 HV---------------------AQQPKPFEESDDS-YS-----VNQGNWRTSNRRKDEE 164
HV ++PK +DD+ Y+ NW+ + RRK E
Sbjct: 168 HVVRKKRREVKAVATKSVEEAGGCERPKRGGGADDADYTSSATDTTDSNWKLTKRRKGEF 227
Query: 165 EEAEKRDDT------STLKKPRFLVS 184
++ + D+ STLK+PR + S
Sbjct: 228 KDENEEDNEQENDDPSTLKRPRVVWS 253
>gi|224088246|ref|XP_002308388.1| predicted protein [Populus trichocarpa]
gi|222854364|gb|EEE91911.1| predicted protein [Populus trichocarpa]
Length = 437
Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 88/139 (63%), Positives = 111/139 (79%), Gaps = 1/139 (0%)
Query: 13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH 72
+FP G+R+L VDDDPI L++LE +LRKC YEVT N+A AL+MLR ++N YD+VISDV+
Sbjct: 16 KFPVGMRILAVDDDPICLKVLENLLRKCQYEVTTTNQAVTALEMLRENRNKYDLVISDVN 75
Query: 73 MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
MPDMDGFKL E VGLEMDLPVIM+S G + V KGVTHGA +YLLKP+R++EL+NIWQH
Sbjct: 76 MPDMDGFKLLELVGLEMDLPVIMLSSHGDKEFVYKGVTHGAVDYLLKPVRMEELKNIWQH 135
Query: 133 VAQQPKPFEESDDSYSVNQ 151
V ++ K + E D + S NQ
Sbjct: 136 VIRRKKWYPE-DQNRSPNQ 153
>gi|255548782|ref|XP_002515447.1| two-component system sensor histidine kinase/response regulator,
putative [Ricinus communis]
gi|223545391|gb|EEF46896.1| two-component system sensor histidine kinase/response regulator,
putative [Ricinus communis]
Length = 663
Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/190 (51%), Positives = 125/190 (65%), Gaps = 20/190 (10%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDDP L +LE LR+C Y VT ++A AL MLR +KN +D+VISDV
Sbjct: 12 DQFPIGMRVLAVDDDPTCLLVLETFLRRCQYHVTTTSQAISALKMLRENKNKFDLVISDV 71
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+S + VMKG+THGAC+YLLKP+RI+EL+NIWQ
Sbjct: 72 HMPDMDGFKLLELVGLEMDLPVIMLSAYSDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 131
Query: 132 HVAQQPKPFEESDDSYSVNQ-----------GNWRTSNRRKDEE--------EEAEKRDD 172
HV ++ K + D + NQ + + + +RKD+ E + +D
Sbjct: 132 HVIRR-KKVDNKDQNNFDNQDKLPRGSGEATADQKLNKKRKDQNEDEDEDRDEHGHENED 190
Query: 173 TSTLKKPRFL 182
+T KKPR +
Sbjct: 191 PTTQKKPRVV 200
>gi|449457923|ref|XP_004146697.1| PREDICTED: two-component response regulator ARR12-like [Cucumis
sativus]
gi|449505373|ref|XP_004162449.1| PREDICTED: two-component response regulator ARR12-like [Cucumis
sativus]
Length = 697
Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 127/201 (63%), Gaps = 27/201 (13%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
+D FP G+RVL VDDDPI L++LE +LRKC Y VT ++ AL MLR ++N +D+VI
Sbjct: 15 GATDHFPVGMRVLAVDDDPICLKVLESLLRKCQYHVTTTKQSIEALRMLRENRNKFDLVI 74
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDV+MPDMDGFKL E VGLEMDLPVIM+S T+ VMKG+ HGAC+YLLKP+RI+EL+N
Sbjct: 75 SDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKN 134
Query: 129 IWQHVAQQPKPFEESDDSY-----------SVNQGNWRTSN--------RRK-------- 161
IWQHV ++ K ++ + + V QG TSN +RK
Sbjct: 135 IWQHVIRRKKLEPKAKNKFPSQNKVQNGGNEVEQGFSPTSNADSAKFNRKRKDQDDDDDD 194
Query: 162 DEEEEAEKRDDTSTLKKPRFL 182
+ +E DD S KKPR +
Sbjct: 195 EGKENGLDSDDPSNQKKPRVV 215
>gi|297798770|ref|XP_002867269.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313105|gb|EFH43528.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 181 bits (460), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 95/182 (52%), Positives = 123/182 (67%), Gaps = 8/182 (4%)
Query: 8 VAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIV 67
+ V DQFP G+RVL VDDD LRIL+ +L +C Y VT N+A+ AL++LR +KN +D+V
Sbjct: 7 IEVLDQFPVGMRVLAVDDDQTCLRILQTLLHRCQYHVTTTNQAQTALELLRENKNKFDLV 66
Query: 68 ISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
ISDV MPDMDGFKL E VGLEMDLPVIM+S + VMKGV HGAC+YLLKP+RI+EL+
Sbjct: 67 ISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELK 126
Query: 128 NIWQHVAQQPKPFEESDDSYSVNQGNWRTSNRRKDEE-------EEAEKRDDTSTLKKPR 180
NIWQHV ++ K + + N +NR++ E+ E + DD + KKPR
Sbjct: 127 NIWQHVVRKSKLKKNKSSVSN-GAANSDKANRKRKEQYEEEEEEERGNENDDPTAQKKPR 185
Query: 181 FL 182
L
Sbjct: 186 VL 187
>gi|298103722|emb|CBM42562.1| putative B-type response regulator 19 [Populus x canadensis]
Length = 685
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/162 (56%), Positives = 118/162 (72%), Gaps = 7/162 (4%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP G+RVL VDDDPI L++LE +LRKC YEVT N+A AL+MLR ++N YD+VISDV+M
Sbjct: 17 FPVGMRVLAVDDDPICLKVLENLLRKCQYEVTTTNQAVTALEMLRENRNKYDLVISDVNM 76
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGFKL E VGLEMDLPVIM+S G + V KG+THGA +YLLKP+R++EL+NIWQHV
Sbjct: 77 PDMDGFKLLELVGLEMDLPVIMLSSHGDKEFVYKGITHGAVDYLLKPVRLEELKNIWQHV 136
Query: 134 AQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTST 175
++ K + + D + S NQ ++ D E E+ T +
Sbjct: 137 IRRKKWYPQ-DQNGSPNQ------DKGGDGAGEGEQVTSTGS 171
>gi|125542952|gb|EAY89091.1| hypothetical protein OsI_10579 [Oryza sativa Indica Group]
Length = 691
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 95/210 (45%), Positives = 127/210 (60%), Gaps = 28/210 (13%)
Query: 1 MSPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS 60
M+P V +FP G++VLVVDDDP L +L++ML +C Y+ T C++A AL MLR +
Sbjct: 1 MAPVEDGGGV--EFPVGMKVLVVDDDPTCLAVLKRMLLECRYDATTCSQATRALTMLREN 58
Query: 61 KNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
+ G+D++ISDVHMPDMDGF+L E VGLEMDLPVIMMS D T VMKG+ HGAC+YL+KP
Sbjct: 59 RRGFDVIISDVHMPDMDGFRLLELVGLEMDLPVIMMSADSRTDIVMKGIKHGACDYLIKP 118
Query: 121 IRIKELRNIWQHVA----------QQPKPFEESDDSYSVNQGNWRTSNRRKDEE------ 164
+R++EL+NIWQHV + +++D + N N S+ E
Sbjct: 119 VRMEELKNIWQHVIRKKFNENKEHEHSGSLDDTDRTRPTNNDNEYASSANDGAEGSWKSQ 178
Query: 165 ----------EEAEKRDDTSTLKKPRFLVS 184
E E D +ST KKPR + S
Sbjct: 179 KKKRDKDDDDGELESGDPSSTSKKPRVVWS 208
>gi|312283507|dbj|BAJ34619.1| unnamed protein product [Thellungiella halophila]
Length = 539
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/185 (52%), Positives = 125/185 (67%), Gaps = 15/185 (8%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDD LRILE +L +C Y VT ++A+ AL +LR +KN +D+VISDV
Sbjct: 8 DQFPVGMRVLAVDDDQTCLRILETLLHRCQYHVTTTDQAQTALKLLRENKNKFDLVISDV 67
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
MPDMDGFKL E VGLEMDLPVIM+S + VMKGV HGAC+YLLKP+RI+EL+NIWQ
Sbjct: 68 DMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQ 127
Query: 132 HVAQQPKPFEESDDSYS-------VNQGNWRTSNRRKDE-------EEEAEKRDDTSTLK 177
HV ++ K F++ S S +Q + + +RKD+ EE + DD + K
Sbjct: 128 HVVRKGK-FKKMKSSLSNGESEGNSDQNGVKANRKRKDQFEEEEEDEERGIENDDPTAQK 186
Query: 178 KPRFL 182
KPR L
Sbjct: 187 KPRVL 191
>gi|224143990|ref|XP_002325148.1| type-b response regulator [Populus trichocarpa]
gi|222866582|gb|EEF03713.1| type-b response regulator [Populus trichocarpa]
Length = 707
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/125 (66%), Positives = 103/125 (82%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP G+RVL VDDDPI L++LE +LRKC YEVT N+A AL+MLR ++N YD+VISDV+M
Sbjct: 17 FPVGMRVLAVDDDPICLKVLENLLRKCQYEVTTTNQAVTALEMLRENRNKYDLVISDVNM 76
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGFKL E VGLEMDLPVIM+S G + V KG+THGA +YLLKP+R++EL+NIWQHV
Sbjct: 77 PDMDGFKLLELVGLEMDLPVIMLSSHGDKEFVFKGITHGAVDYLLKPVRLEELKNIWQHV 136
Query: 134 AQQPK 138
++ K
Sbjct: 137 IRRKK 141
>gi|159485404|ref|XP_001700734.1| hypothetical protein CHLREDRAFT_113139 [Chlamydomonas reinhardtii]
gi|158281233|gb|EDP06988.1| predicted protein, partial [Chlamydomonas reinhardtii]
Length = 235
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 104/120 (86%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FPAGLR+LVVDDDP+ L+++E+MLRKC YEVT C+ A AL++LR YD+V+SDV+M
Sbjct: 1 FPAGLRLLVVDDDPLCLKVVEQMLRKCSYEVTVCSNATTALNILRDKNTEYDLVLSDVYM 60
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGF+L E VGLEMDLPVIMMS +G T +V++GVTHGAC+YL+KP+R++ELRN+WQHV
Sbjct: 61 PDMDGFRLLELVGLEMDLPVIMMSSNGDTSNVLRGVTHGACDYLIKPVRLEELRNLWQHV 120
>gi|255565035|ref|XP_002523510.1| two-component system sensor histidine kinase/response regulator,
putative [Ricinus communis]
gi|223537217|gb|EEF38849.1| two-component system sensor histidine kinase/response regulator,
putative [Ricinus communis]
Length = 676
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/140 (62%), Positives = 109/140 (77%), Gaps = 1/140 (0%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
D+FP G+RVL VDDDPI L++L+ +L+KC Y+VT N+A AL MLR ++N YD+VISDV
Sbjct: 12 DKFPVGMRVLAVDDDPICLKVLDTLLKKCQYQVTTTNQAIQALKMLRENRNKYDLVISDV 71
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
+MPDMDGFKL E VGLEMDLPVIM+S + V KGVTHGA +YLLKP+RI+EL+NIWQ
Sbjct: 72 NMPDMDGFKLLELVGLEMDLPVIMLSAHSDKELVYKGVTHGAVDYLLKPVRIEELKNIWQ 131
Query: 132 HVAQQPKPFEESDDSYSVNQ 151
HV ++ K + D S S NQ
Sbjct: 132 HVIRR-KKLQPKDQSRSQNQ 150
>gi|356502390|ref|XP_003520002.1| PREDICTED: uncharacterized protein LOC100817125 [Glycine max]
Length = 633
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 118/176 (67%), Gaps = 8/176 (4%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
A + +FP GLRVLVVDDD L+I+E+M +C Y VT C A +AL++LR K +D+V+
Sbjct: 5 AAAAEFPVGLRVLVVDDDATTLKIIEQMSIRCRYRVTTCTEATVALNLLRERKGCFDVVL 64
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDVHMPDMDG+KL E VGLEMDLPVIMMS D T VMKG+ HGAC+YL+KP+R +ELRN
Sbjct: 65 SDVHMPDMDGYKLLEHVGLEMDLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRN 124
Query: 129 IWQHVAQQPKPFEESDDSYSVNQGNWRTSNRRK----DEEEEAEKRDDTSTLKKPR 180
IWQHV ++ +D+ N G+ S+R K D E + D +K P+
Sbjct: 125 IWQHVVRK----FWNDNKELDNSGSMEDSDRNKWGNDDAEYTSSVADAAEVVKAPK 176
>gi|413951616|gb|AFW84265.1| putative two-component response regulator family protein [Zea mays]
Length = 598
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 134/213 (62%), Gaps = 35/213 (16%)
Query: 7 SVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYE------------------VTKCN 48
++A + FP GLRVLVVDDDP WL+ILEKMLRKC YE VT C
Sbjct: 2 ALADATAFPYGLRVLVVDDDPTWLKILEKMLRKCSYEDAMSDRTVIARTGGISSCVTTCG 61
Query: 49 RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVI----------MMSV 98
A +AL +LR +N +DIVISDV+MPDMDGFKL E +GLEMDLPVI +MS+
Sbjct: 62 LASVALQILRERRNKFDIVISDVNMPDMDGFKLLELIGLEMDLPVISTKLLQSVSTVMSI 121
Query: 99 DGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP----KPFEESDDSYSV-NQGN 153
DG T VMKGV HGAC+YLLKP+R+KELRNIWQHV ++ K E+ D + + +
Sbjct: 122 DGETSRVMKGVHHGACDYLLKPVRMKELRNIWQHVYRKKMHEVKEIEDGLDERGLFMRAD 181
Query: 154 WRTSNRRKDEEEEAEKRD--DTSTLKKPRFLVS 184
T +RK+ +++ +D D +T KK R + S
Sbjct: 182 TDTMRKRKEVDKDHADQDSSDGATAKKARVVWS 214
>gi|357466055|ref|XP_003603312.1| Two-component response regulator ARR1 [Medicago truncatula]
gi|355492360|gb|AES73563.1| Two-component response regulator ARR1 [Medicago truncatula]
Length = 645
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 120/175 (68%), Gaps = 5/175 (2%)
Query: 8 VAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIV 67
V D+FP G+RVL VDDDP L +LE +LR+C Y VT ++A AL MLR +K+ +D+V
Sbjct: 2 VDSGDRFPIGMRVLAVDDDPTCLLVLETLLRRCQYHVTTTSQAITALTMLRENKDKFDLV 61
Query: 68 ISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
ISDVHMPDMDGFKL E VGLEMDLPVIM+S G T+ VMKG++HGAC+YLLKP+R++EL+
Sbjct: 62 ISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLVMKGISHGACDYLLKPVRLEELK 121
Query: 128 NIWQHVAQQPK--PFEESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKPR 180
NIWQHV ++ K P E++ S + S R AE D+ L K R
Sbjct: 122 NIWQHVIRKKKSDPKEKNKTSKPDKTTSDSGSGLR---SAGAENSDENGKLTKKR 173
>gi|240254528|ref|NP_180090.6| response regulator 12 [Arabidopsis thaliana]
gi|378405150|sp|P62598.2|ARR12_ARATH RecName: Full=Two-component response regulator ARR12
gi|330252573|gb|AEC07667.1| response regulator 12 [Arabidopsis thaliana]
Length = 596
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 113/169 (66%), Gaps = 9/169 (5%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDD L+ILE +LR C Y VT N+A+ AL++LR +KN +D+VISDV
Sbjct: 11 DQFPVGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDV 70
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
MPDMDGFKL E VGLEMDLPVIM+S + VMKGVTHGAC+YLLKP+RI+EL+NIWQ
Sbjct: 71 DMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQ 130
Query: 132 HVAQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKPR 180
HV + + N+G+ ++R E D + K R
Sbjct: 131 HVVR---------SRFDKNRGSNNNGDKRDGSGNEGVGNSDQNNGKGNR 170
>gi|25365080|pir||C84645 hypothetical protein At2g25180 [imported] - Arabidopsis thaliana
Length = 573
Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 113/169 (66%), Gaps = 9/169 (5%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDD L+ILE +LR C Y VT N+A+ AL++LR +KN +D+VISDV
Sbjct: 11 DQFPVGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDV 70
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
MPDMDGFKL E VGLEMDLPVIM+S + VMKGVTHGAC+YLLKP+RI+EL+NIWQ
Sbjct: 71 DMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQ 130
Query: 132 HVAQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKPR 180
HV + + N+G+ ++R E D + K R
Sbjct: 131 HVVR---------SRFDKNRGSNNNGDKRDGSGNEGVGNSDPNNGKGNR 170
>gi|356515054|ref|XP_003526216.1| PREDICTED: two-component response regulator ARR12-like [Glycine
max]
Length = 696
Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
D+FP G+RVL VDDDP L +LE +LR+C Y T N+A AL +LR K+ +D+VISDV
Sbjct: 12 DEFPVGMRVLAVDDDPTCLLVLETLLRRCQYHATTTNQAIKALALLREHKDKFDLVISDV 71
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+S +G T+ VMKG++HGAC+YLLKP+R++EL+NIWQ
Sbjct: 72 HMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQ 131
Query: 132 HVAQQPK 138
HV ++ K
Sbjct: 132 HVIRRKK 138
>gi|168062796|ref|XP_001783363.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665113|gb|EDQ51808.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/205 (50%), Positives = 127/205 (61%), Gaps = 32/205 (15%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
D+FP G+RVLVVDDDP L +LE+ML C Y VT C RA AL +LR +D+VISDV
Sbjct: 6 DEFPVGMRVLVVDDDPTCLVLLERMLILCSYRVTTCGRATDALLLLREDIGKFDLVISDV 65
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
MPDMDGFKL E VGLEMDLPVIMMS +G T VM+GV HGAC+YL+KP+ IKELRN+WQ
Sbjct: 66 DMPDMDGFKLLELVGLEMDLPVIMMSGNGETSAVMEGVIHGACDYLIKPVGIKELRNVWQ 125
Query: 132 HVAQQP---------KPFEES-------------DDSYS-----VNQGNWRTSNRRKDEE 164
HV ++ K EE+ D Y+ GNW+ S RRK E
Sbjct: 126 HVVRKKRQEVKAVSMKSIEEAGGCERQKRAGGADDADYTSSATDTTDGNWKLSKRRKGEF 185
Query: 165 EEAEKRDDT-----STLKKPRFLVS 184
+E + D+ ST+KKPR + S
Sbjct: 186 KEENEDDNEENDDPSTMKKPRVVWS 210
>gi|115451653|ref|NP_001049427.1| Os03g0224200 [Oryza sativa Japonica Group]
gi|24308616|gb|AAN52739.1| Putative response regulator 10 [Oryza sativa Japonica Group]
gi|108706930|gb|ABF94725.1| myb-like DNA-binding domain, SHAQKYF class family protein,
expressed [Oryza sativa Japonica Group]
gi|108706931|gb|ABF94726.1| myb-like DNA-binding domain, SHAQKYF class family protein,
expressed [Oryza sativa Japonica Group]
gi|108706932|gb|ABF94727.1| myb-like DNA-binding domain, SHAQKYF class family protein,
expressed [Oryza sativa Japonica Group]
gi|110331747|dbj|BAE97711.1| B-type response regulator [Oryza sativa Japonica Group]
gi|113547898|dbj|BAF11341.1| Os03g0224200 [Oryza sativa Japonica Group]
gi|118790738|tpd|FAA00254.1| TPA: response regulator [Oryza sativa Japonica Group]
gi|125585452|gb|EAZ26116.1| hypothetical protein OsJ_09978 [Oryza sativa Japonica Group]
gi|215767224|dbj|BAG99452.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767240|dbj|BAG99468.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 691
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 138/210 (65%), Gaps = 32/210 (15%)
Query: 1 MSPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS 60
M+P V +FP G++VLVVDDDP L +L++ML +C Y+ T C++A AL MLR +
Sbjct: 1 MAPVEDGGGV--EFPVGMKVLVVDDDPTCLAVLKRMLLECRYDATTCSQATRALTMLREN 58
Query: 61 KNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
+ G+D++ISDVHMPDMDGF+L E VGLEMDLPVIMMS D T VMKG+ HGAC+YL+KP
Sbjct: 59 RRGFDVIISDVHMPDMDGFRLLELVGLEMDLPVIMMSADSRTDIVMKGIKHGACDYLIKP 118
Query: 121 IRIKELRNIWQHVAQQPKPFEE--------------------SDDSYSVN-----QGNWR 155
+R++EL+NIWQHV + K F E +D+ Y+ + +G+W+
Sbjct: 119 VRMEELKNIWQHVIR--KKFNENKEHEHSGSLDDTDRTRPTNNDNEYASSANDGAEGSWK 176
Query: 156 TSNRRKDEEE---EAEKRDDTSTLKKPRFL 182
+ +++D+++ E E D +ST KKPR +
Sbjct: 177 SQKKKRDKDDDDGELESGDPSSTSKKPRVV 206
>gi|359484783|ref|XP_002270833.2| PREDICTED: two-component response regulator ARR12-like [Vitis
vinifera]
Length = 712
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/145 (59%), Positives = 109/145 (75%), Gaps = 1/145 (0%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
V D FP G+RVL VDDDP L +L+ +LR+C Y+VT N+A AL MLR +KN +D+VI
Sbjct: 15 GVKDPFPVGMRVLAVDDDPTCLMLLDGLLRRCQYQVTTTNQAITALKMLRENKNNFDLVI 74
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDV MPDMDGFKL E VGLEMDLPVIM+S + VM+G+THGAC+YLLKP+RI+EL+N
Sbjct: 75 SDVSMPDMDGFKLLELVGLEMDLPVIMLSSHSDPKLVMRGITHGACDYLLKPVRIEELKN 134
Query: 129 IWQHVAQQPKPFEESDDSYSVNQGN 153
IWQHV ++ K + D + S +Q N
Sbjct: 135 IWQHVIRR-KKIDSKDQNKSADQDN 158
>gi|356554201|ref|XP_003545437.1| PREDICTED: LOW QUALITY PROTEIN: two-component response regulator
ARR12-like [Glycine max]
Length = 681
Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 100/199 (50%), Positives = 129/199 (64%), Gaps = 26/199 (13%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDD L +LE +LR+C Y VT A AL +LR +K +D+VISDV
Sbjct: 14 DQFPIGMRVLAVDDDSTCLMVLETLLRRCQYHVTTTKNAITALKLLRENKTMFDLVISDV 73
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+SV+ + VMKG+THGAC+YLLKP+RI+EL+NIWQ
Sbjct: 74 HMPDMDGFKLLELVGLEMDLPVIMLSVNDDPKMVMKGITHGACDYLLKPVRIEELQNIWQ 133
Query: 132 HVAQQPK-----PFEESD-DSYSVNQGNWRTSNRRKDEEEE---AEKR------------ 170
HV ++ K + SD D + + GN R S + ++ ++KR
Sbjct: 134 HVIRRKKIDSKERNKTSDHDKPNADNGNGRVSAGTGNSDQNGKPSKKRKDQDEDDEEENE 193
Query: 171 -----DDTSTLKKPRFLVS 184
+D+STLKKPR + S
Sbjct: 194 DGHDNEDSSTLKKPRVVWS 212
>gi|356507378|ref|XP_003522444.1| PREDICTED: two-component response regulator ARR12-like [Glycine
max]
Length = 656
Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 128/198 (64%), Gaps = 28/198 (14%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
D+FP G+RVL VDDDP L +L+ +L++C Y VT N+A AL +LR K+ +D+VISDV
Sbjct: 12 DEFPVGMRVLAVDDDPTCLLVLKTLLQRCQYHVTTTNQAIKALALLREHKDKFDLVISDV 71
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+S +G T+ VMKG++HGAC+YLLKP+R++EL+NIWQ
Sbjct: 72 HMPDMDGFKLLELVGLEMDLPVIMLSANGDTKMVMKGISHGACDYLLKPVRMEELKNIWQ 131
Query: 132 HVAQQPKPFEESD-------DSYSVNQGNWRTSN--RRKDEEEEAEKR------------ 170
HV ++ K F+ + D + N GN S+ D+ E+ K+
Sbjct: 132 HVIRR-KKFDSKEKNKTSNLDKPTSNSGNGLGSSGTGNSDQNEKLTKKRKDQDEDEDEDQ 190
Query: 171 ------DDTSTLKKPRFL 182
+D S KKPR +
Sbjct: 191 ENDLDNEDPSAQKKPRVV 208
>gi|297825553|ref|XP_002880659.1| hypothetical protein ARALYDRAFT_481375 [Arabidopsis lyrata subsp.
lyrata]
gi|297326498|gb|EFH56918.1| hypothetical protein ARALYDRAFT_481375 [Arabidopsis lyrata subsp.
lyrata]
Length = 611
Score = 178 bits (451), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 116/167 (69%), Gaps = 18/167 (10%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDD L+ILE +LR C Y VT N A+ AL++LR +KN +D+VISDV
Sbjct: 11 DQFPVGMRVLAVDDDQTCLKILETLLRHCQYHVTTTNEAQKALELLRENKNKFDLVISDV 70
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
MPDMDGFKL E VGLEMDLPVIM+S + VMKGVTHGAC+YLLKP+RI+EL+NIWQ
Sbjct: 71 DMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKFVMKGVTHGACDYLLKPVRIEELKNIWQ 130
Query: 132 HVAQQPKPFEESDDS---------------YSVNQGNWRTSNRRKDE 163
HV + F+++ S YS +Q N R + +RKD+
Sbjct: 131 HVVR--SRFDKNRGSNNGDKRDGSGNEGVGYS-DQNNGRANRKRKDQ 174
>gi|356562101|ref|XP_003549312.1| PREDICTED: two-component response regulator ARR12-like [Glycine
max]
Length = 667
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/197 (49%), Positives = 127/197 (64%), Gaps = 26/197 (13%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDD L +LE +LR+C Y VT A AL++LR +K +D+VISDV
Sbjct: 14 DQFPIGMRVLAVDDDSTCLMVLETLLRRCQYHVTTTKNAITALNLLRENKTMFDLVISDV 73
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+SV+ + VMKG+THGAC+YLLKP+RI+EL+NIWQ
Sbjct: 74 HMPDMDGFKLLELVGLEMDLPVIMLSVNDDPKMVMKGITHGACDYLLKPVRIEELQNIWQ 133
Query: 132 HVAQQPK-----PFEESD-DSYSVNQGNWRTSNRRKDEEEE---AEKR------------ 170
HV ++ K + SD D + + GN R S + ++ ++KR
Sbjct: 134 HVIRRKKIDSKEQNKTSDYDKTNSDSGNGRGSAATGNSDQNGKPSKKRKDQDEDDDEEND 193
Query: 171 -----DDTSTLKKPRFL 182
+D ST KKPR +
Sbjct: 194 TDHDNEDPSTQKKPRVV 210
>gi|302768857|ref|XP_002967848.1| type B response regulator [Selaginella moellendorffii]
gi|300164586|gb|EFJ31195.1| type B response regulator [Selaginella moellendorffii]
Length = 414
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/126 (65%), Positives = 100/126 (79%), Gaps = 1/126 (0%)
Query: 12 DQF-PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
D F P GL+VLVVDDDP L +LE+MLR+C Y VT C+RA AL +LR K +D+VISD
Sbjct: 2 DHFSPTGLKVLVVDDDPCCLTLLERMLRECKYAVTTCSRATAALTILRERKESFDVVISD 61
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
VHMPDMDGFKL E +GLEM +PVIMMS G T VMKGV +GAC+YL+KP+RI+ELRNIW
Sbjct: 62 VHMPDMDGFKLLELIGLEMGIPVIMMSASGETDAVMKGVVYGACDYLVKPVRIEELRNIW 121
Query: 131 QHVAQQ 136
QHV ++
Sbjct: 122 QHVVRR 127
>gi|302799824|ref|XP_002981670.1| hypothetical protein SELMODRAFT_115021 [Selaginella moellendorffii]
gi|300150502|gb|EFJ17152.1| hypothetical protein SELMODRAFT_115021 [Selaginella moellendorffii]
Length = 413
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/126 (65%), Positives = 100/126 (79%), Gaps = 1/126 (0%)
Query: 12 DQF-PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
D F P GL+VLVVDDDP L +LE+MLR+C Y VT C+RA AL +LR K +D+VISD
Sbjct: 2 DHFSPTGLKVLVVDDDPCCLTLLERMLRECKYAVTTCSRATAALTILRERKESFDVVISD 61
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
VHMPDMDGFKL E +GLEM +PVIMMS G T VMKGV +GAC+YL+KP+RI+ELRNIW
Sbjct: 62 VHMPDMDGFKLLELIGLEMGIPVIMMSASGETDAVMKGVVYGACDYLVKPVRIEELRNIW 121
Query: 131 QHVAQQ 136
QHV ++
Sbjct: 122 QHVVRR 127
>gi|255084361|ref|XP_002508755.1| g2-like myb-transcription factor with a n-terminal response
regulator receiver domain [Micromonas sp. RCC299]
gi|226524032|gb|ACO70013.1| g2-like myb-transcription factor with a n-terminal response
regulator receiver domain [Micromonas sp. RCC299]
Length = 488
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 117/175 (66%), Gaps = 7/175 (4%)
Query: 6 SSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
S+ AVS FP GLRVLVVDDDP+ L+I+EKML++C YEVT +R AL LR K+ +D
Sbjct: 2 STPAVSKGFPIGLRVLVVDDDPLCLKIVEKMLKRCQYEVTTFSRGAEALKTLRERKDDFD 61
Query: 66 IVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
IV+SDVHMPDMDGFKL E + LE+D+PV+MMS + T V++G+ HGA +YLLKP+RI+E
Sbjct: 62 IVLSDVHMPDMDGFKLLEHIALELDIPVMMMSANCATDVVLRGIIHGAVDYLLKPVRIEE 121
Query: 126 LRNIWQHVAQQPKPFEESDDSYSVNQGNWRT-------SNRRKDEEEEAEKRDDT 173
LRNIWQHV ++ + + + N RT KD + +E+ D
Sbjct: 122 LRNIWQHVVRRKRESSQGNLRSGEGGSNGRTVSGGSTGEGGGKDSKGSSEQHGDA 176
>gi|2244969|emb|CAB10390.1| hypothetical protein [Arabidopsis thaliana]
gi|3549643|emb|CAA06433.1| receiver-like protein 5 [Arabidopsis thaliana]
gi|7268360|emb|CAB78653.1| hypothetical protein [Arabidopsis thaliana]
Length = 644
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 133/219 (60%), Gaps = 43/219 (19%)
Query: 2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK 61
S ++ + SD FPA LRVLVVDDDP L ILE+ML CLY + + L R +K
Sbjct: 12 SGTAAGGSNSDPFPANLRVLVVDDDPTCLMILERMLMTCLYREQRAH----CLCFGR-TK 66
Query: 62 NGYDIVISDVHMPDMDGFKLHEQVGLEMDLP----------VIMMSVDGCTQDVMKGVTH 111
NG+DIVISDVHMPDMDGFKL E VGLEMDLP VI+MS D V+KGVTH
Sbjct: 67 NGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVINLNVLKPLVIVMSADDSKSVVLKGVTH 126
Query: 112 GACNYLLKPIRIKELRNIWQHVA--------------------------QQPKPFEESDD 145
GA +YL+KP+RI+ L+NIWQHV QQ + ++
Sbjct: 127 GAVDYLIKPVRIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNN 186
Query: 146 SYSVNQGNWRTSNRRKDEE--EEAEKRDDTSTLKKPRFL 182
S SVN+GN R+S +RK+EE ++ + ++D+S+LKKPR +
Sbjct: 187 SSSVNEGNGRSSRKRKEEEVDDQGDDKEDSSSLKKPRVV 225
>gi|297814420|ref|XP_002875093.1| hypothetical protein ARALYDRAFT_904389 [Arabidopsis lyrata subsp.
lyrata]
gi|297320931|gb|EFH51352.1| hypothetical protein ARALYDRAFT_904389 [Arabidopsis lyrata subsp.
lyrata]
Length = 386
Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 80/130 (61%), Positives = 109/130 (83%), Gaps = 1/130 (0%)
Query: 8 VAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIV 67
+A++DQFP+GLR+L+VDDD L ILEKML + +Y+VT C++A++AL +LR K+ +D+V
Sbjct: 1 MAINDQFPSGLRILLVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLV 60
Query: 68 ISDVHMPDMDGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+SDVHMP M+G+KL +QVG LE+DLPVIMMSVDG T VM G+ HGAC+YL+KPIR +EL
Sbjct: 61 LSDVHMPGMNGYKLLQQVGLLELDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEEL 120
Query: 127 RNIWQHVAQQ 136
+NIWQHV ++
Sbjct: 121 KNIWQHVVRR 130
>gi|255564288|ref|XP_002523141.1| two-component sensor histidine kinase bacteria, putative [Ricinus
communis]
gi|223537703|gb|EEF39326.1| two-component sensor histidine kinase bacteria, putative [Ricinus
communis]
Length = 473
Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 121/194 (62%), Gaps = 21/194 (10%)
Query: 6 SSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
+S VS++FPAGLRVLVVDDD L ILEKMLR CLY+VTKC +A+ AL MLR KN +D
Sbjct: 23 TSDCVSNEFPAGLRVLVVDDDRTCLLILEKMLRNCLYKVTKCRKAKDALSMLREDKNKFD 82
Query: 66 IVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
IV+ D+HMPDMDGF+L E EM LPV+MMS D + + KGV HGAC+YL+KP+R++
Sbjct: 83 IVVIDLHMPDMDGFELLEIAEFEMGLPVVMMSSDDDHEVIKKGVLHGACDYLIKPVRMEA 142
Query: 126 LRNIWQHVAQQPKPF---------------------EESDDSYSVNQGNWRTSNRRKDEE 164
L+ IWQHV ++ K + DD N N R S RR++ E
Sbjct: 143 LKMIWQHVIRKKKNTAKDELEQLIGLEDDILLLTKPDSDDDMIHGNLNNTRNSKRRRNNE 202
Query: 165 EEAEKRDDTSTLKK 178
+ E D +T KK
Sbjct: 203 YDDEPSDPAATGKK 216
>gi|21593727|gb|AAM65694.1| putative two-component response regulator protein [Arabidopsis
thaliana]
Length = 382
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/128 (62%), Positives = 106/128 (82%), Gaps = 1/128 (0%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
++DQFP+GLR+LVVDDD L ILEKML + +Y+VT C++A++AL +LR K+ +D+V+S
Sbjct: 3 INDQFPSGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLS 62
Query: 70 DVHMPDMDGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
DVHMP M+G+ L +QVG LEMDLPVIMMSVDG T VM G+ HGAC+YL+KPIR +EL+N
Sbjct: 63 DVHMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKN 122
Query: 129 IWQHVAQQ 136
IWQHV ++
Sbjct: 123 IWQHVVRR 130
>gi|15226345|ref|NP_178285.1| two-component response regulator ARR14 [Arabidopsis thaliana]
gi|50400550|sp|Q8L9Y3.2|ARR14_ARATH RecName: Full=Two-component response regulator ARR14
gi|4220473|gb|AAD12696.1| putative two-component response regulator protein [Arabidopsis
thaliana]
gi|20466520|gb|AAM20577.1| putative two-component response regulator protein [Arabidopsis
thaliana]
gi|22136418|gb|AAM91287.1| putative two-component response regulator protein [Arabidopsis
thaliana]
gi|330250401|gb|AEC05495.1| two-component response regulator ARR14 [Arabidopsis thaliana]
Length = 382
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/128 (62%), Positives = 106/128 (82%), Gaps = 1/128 (0%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
++DQFP+GLR+LVVDDD L ILEKML + +Y+VT C++A++AL +LR K+ +D+V+S
Sbjct: 3 INDQFPSGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLS 62
Query: 70 DVHMPDMDGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
DVHMP M+G+ L +QVG LEMDLPVIMMSVDG T VM G+ HGAC+YL+KPIR +EL+N
Sbjct: 63 DVHMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKN 122
Query: 129 IWQHVAQQ 136
IWQHV ++
Sbjct: 123 IWQHVVRR 130
>gi|356546098|ref|XP_003541468.1| PREDICTED: two-component response regulator ARR12-like [Glycine
max]
Length = 680
Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/126 (63%), Positives = 99/126 (78%)
Query: 8 VAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIV 67
+ V D+FP G+RVL VDDD L +LE +LRKC Y VT N+A AL+MLR ++N +D+V
Sbjct: 1 MVVGDRFPVGMRVLAVDDDKTCLTVLENLLRKCQYNVTTTNQAIKALEMLRKNRNKFDLV 60
Query: 68 ISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
ISDV+MPDMDGFKL E VGLEMDLPVIM+S G + VM+GV GAC+YL KP+RI+EL+
Sbjct: 61 ISDVNMPDMDGFKLLELVGLEMDLPVIMLSGYGDKERVMRGVIQGACDYLTKPVRIEELQ 120
Query: 128 NIWQHV 133
NIWQHV
Sbjct: 121 NIWQHV 126
>gi|297743941|emb|CBI36911.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 87/185 (47%), Positives = 125/185 (67%), Gaps = 7/185 (3%)
Query: 5 SSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY 64
S + AV QFP G+RVL VDDD L+I+ +ML +C+Y+VTKC AE AL +LR + +
Sbjct: 11 SVTAAVPLQFPEGIRVLAVDDDQTCLQIMGRMLERCMYKVTKCRNAEEALSLLREDSSRF 70
Query: 65 DIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIK 124
DIV+SD+HMPD+ G KL E +GLEMD+PV+MMS D + +MKG+ HGAC+Y +KP+R+
Sbjct: 71 DIVLSDLHMPDISGLKLLEIIGLEMDMPVVMMSSDEKRETIMKGIIHGACDYWVKPVRMD 130
Query: 125 ELRNIWQHVAQQP----KPFEES--DDSYSVNQGNWRTSNRRKDEEEEAEKRDDT-STLK 177
++ +WQHV ++ K E + DD N+ R+ R+KD E+E E R+ +T+K
Sbjct: 131 AIQLVWQHVIRKRRNGLKEMEHAMEDDVEGGNEEGSRSMKRKKDREDEGESRNAMPTTVK 190
Query: 178 KPRFL 182
KPR +
Sbjct: 191 KPRMV 195
>gi|225437477|ref|XP_002269371.1| PREDICTED: two-component response regulator ARR2-like [Vitis
vinifera]
Length = 519
Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 87/185 (47%), Positives = 125/185 (67%), Gaps = 7/185 (3%)
Query: 5 SSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY 64
S + AV QFP G+RVL VDDD L+I+ +ML +C+Y+VTKC AE AL +LR + +
Sbjct: 11 SVTAAVPLQFPEGIRVLAVDDDQTCLQIMGRMLERCMYKVTKCRNAEEALSLLREDSSRF 70
Query: 65 DIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIK 124
DIV+SD+HMPD+ G KL E +GLEMD+PV+MMS D + +MKG+ HGAC+Y +KP+R+
Sbjct: 71 DIVLSDLHMPDISGLKLLEIIGLEMDMPVVMMSSDEKRETIMKGIIHGACDYWVKPVRMD 130
Query: 125 ELRNIWQHVAQQP----KPFEES--DDSYSVNQGNWRTSNRRKDEEEEAEKRDDT-STLK 177
++ +WQHV ++ K E + DD N+ R+ R+KD E+E E R+ +T+K
Sbjct: 131 AIQLVWQHVIRKRRNGLKEMEHAMEDDVEGGNEEGSRSMKRKKDREDEGESRNAMPTTVK 190
Query: 178 KPRFL 182
KPR +
Sbjct: 191 KPRMV 195
>gi|303287506|ref|XP_003063042.1| g2-like myb-transcription factor with a n-terminal response
regulator receiver domain [Micromonas pusilla CCMP1545]
gi|226455678|gb|EEH52981.1| g2-like myb-transcription factor with a n-terminal response
regulator receiver domain [Micromonas pusilla CCMP1545]
Length = 544
Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 101/123 (82%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FPAGLRVLVVDDDP+ LRI+EKML++C YEVT +R AL+ LR ++ +DIV+SDVHM
Sbjct: 11 FPAGLRVLVVDDDPLCLRIVEKMLKRCQYEVTTFSRGAEALETLRARRDDFDIVLSDVHM 70
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGFKL E + LE+D+PV+MMS + T V++G+ HGA +YLLKP+R++ELRNIWQHV
Sbjct: 71 PDMDGFKLLEHIALELDVPVMMMSANCATDVVLRGIIHGAVDYLLKPVRLEELRNIWQHV 130
Query: 134 AQQ 136
++
Sbjct: 131 VRR 133
>gi|302852985|ref|XP_002958010.1| ARR-B family transcription factor [Volvox carteri f. nagariensis]
gi|300256682|gb|EFJ40943.1| ARR-B family transcription factor [Volvox carteri f. nagariensis]
Length = 254
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/131 (60%), Positives = 104/131 (79%), Gaps = 3/131 (2%)
Query: 13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD-- 70
FPAGLR+LVVDDDP+ L+++E+MLRKC Y+VT C A +AL++LR YD+V+SD
Sbjct: 23 NFPAGLRLLVVDDDPLCLKVVEQMLRKCSYDVTTCTNATMALNLLRDKSTEYDLVLSDSF 82
Query: 71 -VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
V DMDGFKL E VGLEMDLPVIMMS +G T +V++GVTHGAC+YL+KP+R++ELRN+
Sbjct: 83 LVSSSDMDGFKLLEVVGLEMDLPVIMMSSNGDTSNVLRGVTHGACDYLIKPVRLEELRNL 142
Query: 130 WQHVAQQPKPF 140
WQHV ++ +
Sbjct: 143 WQHVVRRRRQL 153
>gi|302798186|ref|XP_002980853.1| type B response regulator [Selaginella moellendorffii]
gi|300151392|gb|EFJ18038.1| type B response regulator [Selaginella moellendorffii]
Length = 470
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/187 (53%), Positives = 128/187 (68%), Gaps = 16/187 (8%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
+ FP G+RVLVVDDDP+ L +L+KML +C Y VT C+RA AL +LR K +D+VISD
Sbjct: 8 GEGFPIGMRVLVVDDDPLCLLLLKKMLLQCKYHVTACSRAVEALQLLREKKFQFDLVISD 67
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
V+MPDMDGFKL E +GLEMDLPVIMMS +G T VM+G+THGAC+YLLKP+RI+ELRNIW
Sbjct: 68 VYMPDMDGFKLLELIGLEMDLPVIMMSGNGETSVVMEGITHGACDYLLKPVRIEELRNIW 127
Query: 131 QHVAQQPKPFEESDDSYSVNQGNW---------RTSNRRKDEEEEAEKRD----DTSTLK 177
QHV ++ E + + S G W TS +RKD++ ++ D D S LK
Sbjct: 128 QHVVRKRGAKEAAKEESS---GEWDDSSEKFPEYTSKKRKDKDADSSGGDDPIEDMSGLK 184
Query: 178 KPRFLVS 184
K R + S
Sbjct: 185 KARVVWS 191
>gi|302815333|ref|XP_002989348.1| hypothetical protein SELMODRAFT_447635 [Selaginella moellendorffii]
gi|300142926|gb|EFJ09622.1| hypothetical protein SELMODRAFT_447635 [Selaginella moellendorffii]
Length = 470
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/187 (52%), Positives = 130/187 (69%), Gaps = 16/187 (8%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
+ FP G+RVLVVDDDP+ L +L+KML +C Y VT C+RA AL +LR K +D+VISD
Sbjct: 8 GEGFPIGMRVLVVDDDPLCLLLLKKMLLQCKYHVTACSRAVEALQLLREKKFQFDLVISD 67
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
V+MPDMDGFKL E +GLEMDLPVIMMS +G T VM+G+THGAC+YLLKP+RI+ELRNIW
Sbjct: 68 VYMPDMDGFKLLELIGLEMDLPVIMMSGNGETSVVMEGITHGACDYLLKPVRIEELRNIW 127
Query: 131 QHVAQQPKPFEESDDSYSVNQGNW---------RTSNRRKDEEEEA----EKRDDTSTLK 177
QHV ++ E + + S G W TS +RK+++ ++ E+ +D S LK
Sbjct: 128 QHVVRKRGAREAAKEESS---GEWDDSSEKFPEYTSKKRKEKDADSSGGDEQIEDISGLK 184
Query: 178 KPRFLVS 184
K R + S
Sbjct: 185 KARVVWS 191
>gi|147787458|emb|CAN60088.1| hypothetical protein VITISV_005486 [Vitis vinifera]
Length = 706
Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/161 (53%), Positives = 109/161 (67%), Gaps = 17/161 (10%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYE----------------VTKCNRAEI 52
V D FP G+RVL VDDDP L +L+ +LR+C Y+ VT N+A
Sbjct: 15 GVKDPFPVGMRVLAVDDDPTCLMLLDGLLRRCQYQGLVLLCFARLLLYMNFVTTTNQAIT 74
Query: 53 ALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHG 112
AL MLR +KN +D+VISDV MPDMDGFKL E VGLEMDLPVIM+S + VM+G+THG
Sbjct: 75 ALKMLRENKNNFDLVISDVSMPDMDGFKLLELVGLEMDLPVIMLSSHSDQKLVMRGITHG 134
Query: 113 ACNYLLKPIRIKELRNIWQHVAQQPKPFEESDDSYSVNQGN 153
AC+YLLKP+RI+EL+NIWQHV ++ K + D + S +Q N
Sbjct: 135 ACDYLLKPVRIEELKNIWQHVIRR-KKIDSKDQNKSADQDN 174
>gi|384254096|gb|EIE27570.1| CheY-like protein [Coccomyxa subellipsoidea C-169]
Length = 302
Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 103/127 (81%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
+ FPAGL+VLVVDDDP+ L+++E MLR+C Y+VT C + AL+ LR +D+V+SDV
Sbjct: 48 EMFPAGLKVLVVDDDPLCLKVVEHMLRRCNYQVTTCPNGKAALEKLRDRSVHFDLVLSDV 107
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
+MPDMDGFKL E +GLE+DLPVIMMS +G T V++GVTHGA ++L+KP+R++ELRN+WQ
Sbjct: 108 YMPDMDGFKLLEHIGLELDLPVIMMSSNGETNVVLRGVTHGAVDFLIKPVRVEELRNVWQ 167
Query: 132 HVAQQPK 138
HV ++ +
Sbjct: 168 HVVRRKR 174
>gi|357480195|ref|XP_003610383.1| Two-component response regulator EHD1 [Medicago truncatula]
gi|355511438|gb|AES92580.1| Two-component response regulator EHD1 [Medicago truncatula]
Length = 597
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/143 (58%), Positives = 104/143 (72%), Gaps = 6/143 (4%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
+ + FPAG+RVL VDDDP +L++LEK L C Y VT + AL++LR K+ +D+VIS
Sbjct: 16 LGEGFPAGMRVLAVDDDPTYLKVLEKQLLTCNYNVTTTTKPVEALELLREKKDMFDLVIS 75
Query: 70 DVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
DV MPDMDGFKL EQVGLEMDLP IM+SV+ + VMK V HGACNYL+KPIR++EL++I
Sbjct: 76 DVSMPDMDGFKLLEQVGLEMDLPFIMLSVNDDIEKVMKSVIHGACNYLVKPIRMEELKSI 135
Query: 130 WQHVAQQPKPFEESDDSYSVNQG 152
WQHV + K E D NQG
Sbjct: 136 WQHVVR--KKIESKDQ----NQG 152
>gi|224089346|ref|XP_002308698.1| type-b response regulator [Populus trichocarpa]
gi|222854674|gb|EEE92221.1| type-b response regulator [Populus trichocarpa]
Length = 588
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/189 (53%), Positives = 129/189 (68%), Gaps = 18/189 (9%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDDP L +LE +LR+C Y VT ++A AL MLR +KN +D+VISDV
Sbjct: 13 DQFPIGMRVLAVDDDPTCLLLLETLLRRCQYTVTTTSQAITALSMLRENKNKFDLVISDV 72
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+S +G + VMKG+THGAC+YLLKP+RI+EL+NIWQ
Sbjct: 73 HMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 132
Query: 132 HVAQQ----PKPFEESDDSYSVNQG------NWRTSNRRK--------DEEEEAEKRDDT 173
HV ++ K SD+ NQG + + + +RK D +E + +D
Sbjct: 133 HVIRRRKYDNKDRNSSDNRDKPNQGSSEAIPDQKLNKKRKDQNEDEDEDRDENEHENEDP 192
Query: 174 STLKKPRFL 182
+T KKPR L
Sbjct: 193 ATQKKPRVL 201
>gi|145340805|ref|XP_001415508.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575731|gb|ABO93800.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 270
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/202 (45%), Positives = 121/202 (59%), Gaps = 33/202 (16%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FPAGL VLVVDDD + L+++EKML+ C Y+VT C+ A+ AL++LR K +DIV+SDVHM
Sbjct: 1 FPAGLGVLVVDDDLLCLKVVEKMLKACKYKVTACSTAKTALEILRTRKEEFDIVLSDVHM 60
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
PDMDGFKL E + E+ LPV+MMS + + V++G+ HGA +YLLKP+RI+ELRNIWQHV
Sbjct: 61 PDMDGFKLLEIIQFELALPVLMMSANSDSSVVLRGIIHGAVDYLLKPVRIEELRNIWQHV 120
Query: 134 AQQPKPFEESDDSYSVNQGN----WRTSNRRKDEEE------------------------ 165
++ +S S V + +TS EE
Sbjct: 121 VRRDYSSAKSSGSEDVEASSPSKRAKTSGSNSKSEEVDRTASEMSSGKARKKPTGKKGGK 180
Query: 166 ---EAEKRD--DTSTLKKPRFL 182
EAEK+D D S KKPR +
Sbjct: 181 SVKEAEKKDVVDNSNSKKPRVV 202
>gi|356528234|ref|XP_003532710.1| PREDICTED: LOW QUALITY PROTEIN: two-component response regulator
ARR11-like [Glycine max]
Length = 581
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/129 (68%), Positives = 94/129 (72%), Gaps = 4/129 (3%)
Query: 6 SSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLY-EVTKCNRAEIALDMLRMSKNGY 64
SS D FPAGLRVLVVDD + + L LY VT C A AL LR K Y
Sbjct: 7 SSSPRHDAFPAGLRVLVVDDXANIISLSNSFL---LYASVTTCCLATEALKKLRERKEAY 63
Query: 65 DIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIK 124
DIVISDV+MPDMDGFKL EQVGLEMDLPVIMMSVDG T VMKGV HGAC+YLLKPIR+K
Sbjct: 64 DIVISDVNMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMK 123
Query: 125 ELRNIWQHV 133
ELRNIWQHV
Sbjct: 124 ELRNIWQHV 132
>gi|242070155|ref|XP_002450354.1| hypothetical protein SORBIDRAFT_05g004150 [Sorghum bicolor]
gi|241936197|gb|EES09342.1| hypothetical protein SORBIDRAFT_05g004150 [Sorghum bicolor]
Length = 694
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/145 (54%), Positives = 105/145 (72%), Gaps = 6/145 (4%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG--YDIVI 68
+D FPAGLRVL VDDD + L+ILE+ L+ C Y T A ALDMLR K+G +D+VI
Sbjct: 3 ADTFPAGLRVLAVDDDRVCLKILERQLKYCNYNATVVTDARTALDMLRERKDGNQFDLVI 62
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDV MP+MDGFKL E +GLEMDLPVIM+S + TQ +MKG+ HGAC+Y++KP+R+++LR
Sbjct: 63 SDVVMPNMDGFKLLELIGLEMDLPVIMLSANNETQTIMKGIKHGACDYIVKPVRLEQLRG 122
Query: 129 IWQHVAQQPKPFEESDDSYSVNQGN 153
IW HV + K +D +++ GN
Sbjct: 123 IWTHVVKNGK----TDPRNTISSGN 143
>gi|147805870|emb|CAN64871.1| hypothetical protein VITISV_039966 [Vitis vinifera]
Length = 570
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 123/204 (60%), Gaps = 30/204 (14%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRK--------C-------LYEVTKCNRAEIALD 55
+D FPAGLRVL VDDDP WL+IL + RK C L VT C A AL
Sbjct: 7 TDAFPAGLRVLAVDDDPAWLKILLIIFRKKLNFAGVICRMFPKLYLARVTTCCVARDALS 66
Query: 56 MLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACN 115
ML+ KN +DI+ISDV+MPDMDGF+L E + +EMDLPVI++SVDG VMKG+ GAC+
Sbjct: 67 MLQERKNSFDIIISDVNMPDMDGFQLLEHLEVEMDLPVILISVDGEMNRVMKGIQSGACD 126
Query: 116 YLLKPIRIKELRNIWQHVAQQ------------PKPFEESDDSYSVNQGNWRTSNRRKDE 163
YLLKP+R++EL+NIWQHV ++ + E DD +N G + +RKD
Sbjct: 127 YLLKPVRMEELKNIWQHVLRKKIHEGKNSQVMISRSSNELDDGQQLNGGEVSATRKRKDM 186
Query: 164 E---EEAEKRDDTSTLKKPRFLVS 184
E + +K + ST KK R + S
Sbjct: 187 ENRRHDDQKSVEPSTSKKARVVWS 210
>gi|298103726|emb|CBM42564.1| putative B-type response regulator 22 [Populus x canadensis]
Length = 668
Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/163 (56%), Positives = 116/163 (71%), Gaps = 10/163 (6%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDDP L +LE +LR+C Y VT ++A AL MLR +KN +D+VISDV
Sbjct: 13 DQFPIGMRVLAVDDDPTCLLLLETLLRRCQYNVTTTSQAITALRMLRENKNKFDLVISDV 72
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+S +G + VMKG+THGAC YLLKP+RI+EL+ IWQ
Sbjct: 73 HMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACYYLLKPVRIEELKTIWQ 132
Query: 132 HVAQQPKP----FEESDDSYSVNQG------NWRTSNRRKDEE 164
HV ++ K SD+ NQG + + + +RKD+
Sbjct: 133 HVIRRKKSDNKDRNSSDNRDKPNQGSSEAVPDQKLNKKRKDQN 175
>gi|224141943|ref|XP_002324320.1| type-b response regulator [Populus trichocarpa]
gi|222865754|gb|EEF02885.1| type-b response regulator [Populus trichocarpa]
Length = 661
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/163 (56%), Positives = 116/163 (71%), Gaps = 10/163 (6%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDDP L +LE +LR+C Y VT ++A AL MLR +KN +D+VISDV
Sbjct: 13 DQFPIGMRVLAVDDDPTCLLLLETLLRRCQYNVTTTSQAITALRMLRENKNKFDLVISDV 72
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
HMPDMDGFKL E VGLEMDLPVIM+S +G + VMKG+THGAC YLLKP+RI+EL+ IWQ
Sbjct: 73 HMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACYYLLKPVRIEELKTIWQ 132
Query: 132 HVAQQPKP----FEESDDSYSVNQG------NWRTSNRRKDEE 164
HV ++ K SD+ NQG + + + +RKD+
Sbjct: 133 HVIRRKKSDNKDRNSSDNRDKPNQGSSEAVPDQKLNKKRKDQN 175
>gi|242085174|ref|XP_002443012.1| hypothetical protein SORBIDRAFT_08g006300 [Sorghum bicolor]
gi|241943705|gb|EES16850.1| hypothetical protein SORBIDRAFT_08g006300 [Sorghum bicolor]
Length = 551
Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 114/176 (64%), Gaps = 12/176 (6%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG--YDIVI 68
+D FPAGLRVL VDDD + L+ILE+ L+ C Y T + A ALDMLR K G +D+VI
Sbjct: 3 ADTFPAGLRVLAVDDDRVCLKILERQLKYCNYNATVVSDARTALDMLRERKEGNQFDLVI 62
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDV MP+MDGFKL E +GLEMDLPVIM+S + TQ +MKG+ HGAC+Y++KP+R+++LR
Sbjct: 63 SDVIMPNMDGFKLLELIGLEMDLPVIMLSANSETQTIMKGIKHGACDYMVKPVRLEQLRG 122
Query: 129 IWQHVAQQPKPFEESDDSYSVNQGN------WRTSNRRKDEEEEAEKRDDTSTLKK 178
IW HV + +D ++N G+ R N K ++ A R+ S K
Sbjct: 123 IWTHVVKN----SMNDPQNNINSGSDDDVQKLRYGNGDKGMKDGANHRNKYSKKNK 174
>gi|118790775|tpd|FAA00258.1| TPA: response regulator [Oryza sativa Japonica Group]
Length = 690
Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 96/130 (73%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
A++ + +FP GLRVL VDD P+ L +LE +LR+C Y+ T A AL MLR
Sbjct: 2 AATQATAARKFPEGLRVLAVDDSPVCLMLLEALLRRCKYQPTMTRDAATALRMLRERPGD 61
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+D+VISDVHM DMDGFKL E +GLEMDLPVIM S +G + +MKGVTHGAC+YL+KP+ +
Sbjct: 62 FDLVISDVHMLDMDGFKLLELIGLEMDLPVIMQSANGELETMMKGVTHGACDYLVKPVSL 121
Query: 124 KELRNIWQHV 133
K+++NIWQHV
Sbjct: 122 KDIQNIWQHV 131
>gi|125598040|gb|EAZ37820.1| hypothetical protein OsJ_22159 [Oryza sativa Japonica Group]
Length = 713
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 96/130 (73%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
A++ + +FP GLRVL VDD P+ L +LE +LR+C Y+ T A AL MLR
Sbjct: 2 AATQATAARKFPEGLRVLAVDDSPVCLMLLEALLRRCKYQPTMTRDAATALRMLRERPGD 61
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+D+VISDVHM DMDGFKL E +GLEMDLPVIM S +G + +MKGVTHGAC+YL+KP+ +
Sbjct: 62 FDLVISDVHMLDMDGFKLLELIGLEMDLPVIMQSANGELETMMKGVTHGACDYLVKPVSL 121
Query: 124 KELRNIWQHV 133
K+++NIWQHV
Sbjct: 122 KDIQNIWQHV 131
>gi|297606271|ref|NP_001058204.2| Os06g0647200 [Oryza sativa Japonica Group]
gi|255677276|dbj|BAF20118.2| Os06g0647200 [Oryza sativa Japonica Group]
Length = 663
Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 96/130 (73%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
A++ + +FP GLRVL VDD P+ L +LE +LR+C Y+ T A AL MLR
Sbjct: 17 AATQATAARKFPEGLRVLAVDDSPVCLMLLEALLRRCKYQPTMTRDAATALRMLRERPGD 76
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+D+VISDVHM DMDGFKL E +GLEMDLPVIM S +G + +MKGVTHGAC+YL+KP+ +
Sbjct: 77 FDLVISDVHMLDMDGFKLLELIGLEMDLPVIMQSANGELETMMKGVTHGACDYLVKPVSL 136
Query: 124 KELRNIWQHV 133
K+++NIWQHV
Sbjct: 137 KDIQNIWQHV 146
>gi|125556273|gb|EAZ01879.1| hypothetical protein OsI_23901 [Oryza sativa Indica Group]
Length = 684
Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 96/130 (73%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
A++ + +FP GLRVL VDD P+ L +LE +LR+C Y+ T A AL MLR
Sbjct: 2 AATQATATRKFPEGLRVLAVDDSPVCLMLLEALLRRCKYQPTMTRDAATALRMLRERPGD 61
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+D+VISDVHM DMDGFKL E +GLEMDLPVIM S +G + +MKGVTHGAC+YL+KP+ +
Sbjct: 62 FDLVISDVHMLDMDGFKLLELIGLEMDLPVIMQSANGELETMMKGVTHGACDYLVKPVSL 121
Query: 124 KELRNIWQHV 133
K+++NIWQHV
Sbjct: 122 KDIQNIWQHV 131
>gi|51535423|dbj|BAD37322.1| putative response regulator 9 [Oryza sativa Japonica Group]
gi|51535645|dbj|BAD37619.1| putative response regulator 9 [Oryza sativa Japonica Group]
Length = 694
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 96/130 (73%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
A++ + +FP GLRVL VDD P+ L +LE +LR+C Y+ T A AL MLR
Sbjct: 2 AATQATAARKFPEGLRVLAVDDSPVCLMLLEALLRRCKYQPTMTRDAATALRMLRERPGD 61
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+D+VISDVHM DMDGFKL E +GLEMDLPVIM S +G + +MKGVTHGAC+YL+KP+ +
Sbjct: 62 FDLVISDVHMLDMDGFKLLELIGLEMDLPVIMQSANGELETMMKGVTHGACDYLVKPVSL 121
Query: 124 KELRNIWQHV 133
K+++NIWQHV
Sbjct: 122 KDIQNIWQHV 131
>gi|296082079|emb|CBI21084.3| unnamed protein product [Vitis vinifera]
Length = 667
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 130/200 (65%), Gaps = 26/200 (13%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
+DQFP G+RVL VDDDP LR+L+ +LR+C Y VT ++A AL MLR +KN +D+VISD
Sbjct: 11 NDQFPIGMRVLAVDDDPTCLRLLDTLLRRCQYHVTTTSQAITALKMLRENKNQFDLVISD 70
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
VHMPDMDGFKL E VGLEMDLPVIM+S + + VMKG+THGAC+YLLKP+RI++L+NIW
Sbjct: 71 VHMPDMDGFKLLELVGLEMDLPVIMLSANDDPKLVMKGITHGACDYLLKPVRIEQLKNIW 130
Query: 131 QHVAQQ----PKPFEESD--------------DSYSVNQGNWRTSNRRKDE--------E 164
QHV ++ P+ SD S N + + + +RKD+ +
Sbjct: 131 QHVIRRRRFDPRDQNNSDSRDKRQGPGEGGQGSSEPGNPDHGKLNKKRKDQNEDDDEEND 190
Query: 165 EEAEKRDDTSTLKKPRFLVS 184
E +D S+ KKPR + S
Sbjct: 191 ENGHDNEDPSSQKKPRVVWS 210
>gi|147863919|emb|CAN81109.1| hypothetical protein VITISV_010435 [Vitis vinifera]
Length = 693
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 130/200 (65%), Gaps = 26/200 (13%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
+DQFP G+RVL VDDDP LR+L+ +LR+C Y VT ++A AL MLR +KN +D+VISD
Sbjct: 11 NDQFPIGMRVLAVDDDPTCLRLLDTLLRRCQYHVTTTSQAITALKMLRENKNQFDLVISD 70
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
VHMPDMDGFKL E VGLEMDLPVIM+S + + VMKG+THGAC+YLLKP+RI++L+NIW
Sbjct: 71 VHMPDMDGFKLLELVGLEMDLPVIMLSANDDPKLVMKGITHGACDYLLKPVRIEQLKNIW 130
Query: 131 QHVAQQ----PKPFEESD--------------DSYSVNQGNWRTSNRRKDE--------E 164
QHV ++ P+ SD S N + + + +RKD+ +
Sbjct: 131 QHVIRRRRFDPRDQNNSDSRDKRQGPGEGGQGSSEPGNPDHGKLNKKRKDQNEDDDEEND 190
Query: 165 EEAEKRDDTSTLKKPRFLVS 184
E +D S+ KKPR + S
Sbjct: 191 ENGHDNEDPSSQKKPRVVWS 210
>gi|225430376|ref|XP_002282928.1| PREDICTED: two-component response regulator ARR12-like [Vitis
vinifera]
Length = 693
Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 130/200 (65%), Gaps = 26/200 (13%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
+DQFP G+RVL VDDDP LR+L+ +LR+C Y VT ++A AL MLR +KN +D+VISD
Sbjct: 11 NDQFPIGMRVLAVDDDPTCLRLLDTLLRRCQYHVTTTSQAITALKMLRENKNQFDLVISD 70
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
VHMPDMDGFKL E VGLEMDLPVIM+S + + VMKG+THGAC+YLLKP+RI++L+NIW
Sbjct: 71 VHMPDMDGFKLLELVGLEMDLPVIMLSANDDPKLVMKGITHGACDYLLKPVRIEQLKNIW 130
Query: 131 QHVAQQ----PKPFEESD--------------DSYSVNQGNWRTSNRRKDE--------E 164
QHV ++ P+ SD S N + + + +RKD+ +
Sbjct: 131 QHVIRRRRFDPRDQNNSDSRDKRQGPGEGGQGSSEPGNPDHGKLNKKRKDQNEDDDEEND 190
Query: 165 EEAEKRDDTSTLKKPRFLVS 184
E +D S+ KKPR + S
Sbjct: 191 ENGHDNEDPSSQKKPRVVWS 210
>gi|255547922|ref|XP_002515018.1| two-component sensor histidine kinase bacteria, putative [Ricinus
communis]
gi|223546069|gb|EEF47572.1| two-component sensor histidine kinase bacteria, putative [Ricinus
communis]
Length = 419
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/130 (60%), Positives = 96/130 (73%), Gaps = 1/130 (0%)
Query: 7 SVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDI 66
S +++ FPAGLRVLVVD+DP W RILEKML+KC Y+V C + AL+MLR K+ YDI
Sbjct: 7 SSPLNNDFPAGLRVLVVDNDPTWSRILEKMLKKCSYQVATCGSRD-ALNMLRGRKDEYDI 65
Query: 67 VISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
VI DV DMDGF+L E +GL+MD PVI S + KGV HGAC+YLLKPIR+KEL
Sbjct: 66 VICDVTTSDMDGFRLLEHIGLKMDCPVINASALXXASALQKGVRHGACDYLLKPIRMKEL 125
Query: 127 RNIWQHVAQQ 136
RNIWQHV ++
Sbjct: 126 RNIWQHVFRK 135
>gi|413954817|gb|AFW87466.1| putative two-component response regulator family protein [Zea mays]
Length = 671
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 96/130 (73%), Gaps = 2/130 (1%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG--YDIVI 68
+D FP GLRVL VDDD + L+ILE+ L+ C Y T A+ ALDMLR K+G +D+VI
Sbjct: 3 ADTFPVGLRVLAVDDDRVCLKILERQLKCCNYNTTVVTDAQTALDMLRERKDGNQFDLVI 62
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDV M MDGFKL E +GLEMDLPVIM+S + TQ +MKG+ HGAC+Y++KP+R+++LR
Sbjct: 63 SDVVMTKMDGFKLLELIGLEMDLPVIMLSANSETQTIMKGIKHGACDYMVKPVRLEQLRG 122
Query: 129 IWQHVAQQPK 138
IW HV + K
Sbjct: 123 IWTHVVKNSK 132
>gi|357480193|ref|XP_003610382.1| Two-component response regulator ARR1 [Medicago truncatula]
gi|355511437|gb|AES92579.1| Two-component response regulator ARR1 [Medicago truncatula]
Length = 633
Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 115/190 (60%), Gaps = 23/190 (12%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP G+RVL VDDD L++LEK L C Y VT ++ AL++LR ++ +D++ISDV+M
Sbjct: 17 FPVGMRVLAVDDDQTSLKVLEKHLLTCKYNVTTTTKSVEALELLREKRSMFDLIISDVNM 76
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
P+MDGFKL EQVGLEMDLP IM+S + VMKGV GAC+YL+KPIR++EL+NIWQHV
Sbjct: 77 PEMDGFKLLEQVGLEMDLPFIMLSGHDDRERVMKGVMKGACDYLVKPIRLEELKNIWQHV 136
Query: 134 AQQPKPFEESDD-----SYSVNQGNWRTSNRRKDEEEEAEKRDDT--------------- 173
+ K E D S V+ + + N K + KR +
Sbjct: 137 VR--KKIESKDQNQGIISDGVSGQDTSSENIPKKNKTHGRKRKEQSEEEEADTDEENDEE 194
Query: 174 -STLKKPRFL 182
ST KKPRF+
Sbjct: 195 HSTRKKPRFV 204
>gi|307107757|gb|EFN55999.1| hypothetical protein CHLNCDRAFT_30989, partial [Chlorella
variabilis]
Length = 334
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 122/190 (64%), Gaps = 9/190 (4%)
Query: 2 SPASSSVAVSDQF--PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLR- 58
+ ASSS A P+GL+VLVVDDDP+ L+++ ML++C YEV + AL +LR
Sbjct: 16 AAASSSGATDCGLFSPSGLKVLVVDDDPMCLKVVSAMLQRCNYEVDTRTSGQDALLLLRD 75
Query: 59 --MSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNY 116
+ +D+V+SDV+MPDMDGFKL E +GLE+DLPVIMMS +G T V++GVTHGA ++
Sbjct: 76 RQEHNHQFDLVLSDVYMPDMDGFKLLEHIGLELDLPVIMMSSNGDTDVVLRGVTHGAVDF 135
Query: 117 LLKPIRIKELRNIWQHVAQQPK-PFEESDDSYS---VNQGNWRTSNRRKDEEEEAEKRDD 172
L+KP+R++ELRN+WQHV ++ + D +S + Q +RK+ E + +
Sbjct: 136 LIKPVRVEELRNVWQHVVRRRSLHVGRASDEHSGLDLEQHQHHHGVKRKEVEALQVQHET 195
Query: 173 TSTLKKPRFL 182
KKPR +
Sbjct: 196 QGANKKPRVV 205
>gi|357480191|ref|XP_003610381.1| Two-component response regulator EHD1 [Medicago truncatula]
gi|355511436|gb|AES92578.1| Two-component response regulator EHD1 [Medicago truncatula]
Length = 593
Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 93/123 (75%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP G+RVL VDDD L++LEK L C Y VT + AL++LR ++ +D+VISDV M
Sbjct: 17 FPVGMRVLAVDDDQTCLKLLEKFLLMCKYNVTTTTKPVEALELLREKRDMFDLVISDVSM 76
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
P+MDGFKL EQVGLE+DLP IM+S + + VMKGV GAC+YL+KPIR++EL+NIWQHV
Sbjct: 77 PEMDGFKLLEQVGLEIDLPFIMLSGNDDRERVMKGVMKGACDYLVKPIRLEELKNIWQHV 136
Query: 134 AQQ 136
++
Sbjct: 137 VRK 139
>gi|358345516|ref|XP_003636823.1| Two-component response regulator ARR1 [Medicago truncatula]
gi|358348885|ref|XP_003638472.1| Two-component response regulator ARR1 [Medicago truncatula]
gi|355502758|gb|AES83961.1| Two-component response regulator ARR1 [Medicago truncatula]
gi|355504407|gb|AES85610.1| Two-component response regulator ARR1 [Medicago truncatula]
gi|403502189|gb|AFR46617.1| response regulator 1 [Medicago truncatula]
Length = 228
Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/123 (60%), Positives = 96/123 (78%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
SD+FP G+RVL VDDDP L +LE +LR C Y VT + A AL ML+ + + +D+VI++
Sbjct: 5 SDRFPIGMRVLAVDDDPTSLLLLETLLRSCQYHVTTTSEAITALTMLQENIDMFDLVIAE 64
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
VHMPDMDG KL E VGLEMDLPVIM+S G T+ VMK ++HGA ++LLKP+R++ELRNIW
Sbjct: 65 VHMPDMDGLKLLELVGLEMDLPVIMLSAHGETELVMKAISHGARDFLLKPVRLEELRNIW 124
Query: 131 QHV 133
QHV
Sbjct: 125 QHV 127
>gi|412992344|emb|CCO20057.1| type-b response regulator [Bathycoccus prasinos]
Length = 580
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 71/122 (58%), Positives = 93/122 (76%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVLVVDDD + L+I+ KML+KC Y VT + AL+ LR K +DIV+SDVHMPDMD
Sbjct: 12 LRVLVVDDDVLCLKIVTKMLQKCGYTVTSTTSSVTALEYLRTKKEEFDIVLSDVHMPDMD 71
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
GFKL EQ+ L++D+PV+MMSV+ V++G+ HGA +YLLKP+RI EL+NIWQHV ++
Sbjct: 72 GFKLLEQIALDIDIPVLMMSVNADQSVVLRGIIHGAVDYLLKPVRIHELKNIWQHVVRKN 131
Query: 138 KP 139
P
Sbjct: 132 GP 133
>gi|225446094|ref|XP_002270118.1| PREDICTED: uncharacterized protein LOC100266808 [Vitis vinifera]
Length = 643
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 94/124 (75%)
Query: 13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH 72
QFP GLRVL VDD+ + L+IL +L +C Y+VT +A AL+MLR ++ +DIVI+DV
Sbjct: 143 QFPDGLRVLAVDDNIVCLKILVTLLEQCRYKVTATTKACEALEMLRENRENFDIVITDVK 202
Query: 73 MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
MPDMDGF L + +GLEMD+PVIM SV+ V+KG+ HGA +YLLKP+R+ E++NIWQH
Sbjct: 203 MPDMDGFTLLKIIGLEMDIPVIMTSVNDDRSTVLKGIRHGARDYLLKPVRVLEIKNIWQH 262
Query: 133 VAQQ 136
V ++
Sbjct: 263 VVRK 266
>gi|147835104|emb|CAN70187.1| hypothetical protein VITISV_039080 [Vitis vinifera]
Length = 650
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 94/124 (75%)
Query: 13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH 72
QFP GLRVL VDD+ + L+IL +L +C Y+VT +A AL+MLR ++ +DIVI+DV
Sbjct: 151 QFPDGLRVLAVDDNIVCLKILVTLLEQCRYKVTATTKACEALEMLRENRXNFDIVITDVK 210
Query: 73 MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
MPDMDGF L + +GLEMD+PVIM SV+ V+KG+ HGA +YLLKP+R+ E++NIWQH
Sbjct: 211 MPDMDGFTLLKIIGLEMDIPVIMTSVNDDRSTVLKGIRHGARDYLLKPVRVLEIKNIWQH 270
Query: 133 VAQQ 136
V ++
Sbjct: 271 VVRK 274
>gi|297735376|emb|CBI17816.3| unnamed protein product [Vitis vinifera]
Length = 216
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 94/124 (75%)
Query: 13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH 72
QFP GLRVL VDD+ + L+IL +L +C Y+VT +A AL+MLR ++ +DIVI+DV
Sbjct: 14 QFPDGLRVLAVDDNIVCLKILVTLLEQCRYKVTATTKACEALEMLRENRENFDIVITDVK 73
Query: 73 MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
MPDMDGF L + +GLEMD+PVIM SV+ V+KG+ HGA +YLLKP+R+ E++NIWQH
Sbjct: 74 MPDMDGFTLLKIIGLEMDIPVIMTSVNDDRSTVLKGIRHGARDYLLKPVRVLEIKNIWQH 133
Query: 133 VAQQ 136
V ++
Sbjct: 134 VVRK 137
>gi|297733625|emb|CBI14872.3| unnamed protein product [Vitis vinifera]
Length = 468
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 105/164 (64%), Gaps = 15/164 (9%)
Query: 36 MLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIM 95
ML+KC YE+T C A AL ML+ KN +DI+ISDV+MPDMDGF+L E + +EMDLPVI+
Sbjct: 1 MLKKCSYEMTTCCVARDALSMLQERKNSFDIIISDVNMPDMDGFQLLEHLEVEMDLPVIL 60
Query: 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ------------PKPFEES 143
+SVDG VMKGV GAC+YLLKP+R++EL+NIWQHV ++ + E
Sbjct: 61 ISVDGEMNRVMKGVQSGACDYLLKPVRMEELKNIWQHVLRKKIHEGKNSQVMISRSSNEL 120
Query: 144 DDSYSVNQGNWRTSNRRKDEE---EEAEKRDDTSTLKKPRFLVS 184
DD +N G + +RKD E + +K + ST KK R + S
Sbjct: 121 DDGQQLNGGEVSATRKRKDMENRRHDDQKSVEPSTSKKARVVWS 164
>gi|50400641|sp|Q9FGT7.2|ARR18_ARATH RecName: Full=Two-component response regulator ARR18
Length = 635
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/125 (58%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
D+FP G+RVL VDD+P LR LE++L +C Y VTK + AL+MLR + N +D+VISDV
Sbjct: 12 DKFPVGMRVLAVDDNPTCLRKLEELLLRCKYHVTKTMESRKALEMLRENSNMFDLVISDV 71
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
MPD DGFKL E +GLEMDLPVIM+S VMKG+ HGAC+YL+KP+ +KEL+NIW
Sbjct: 72 EMPDTDGFKLLE-IGLEMDLPVIMLSAHSDYDSVMKGIIHGACDYLVKPVGLKELQNIWH 130
Query: 132 HVAQQ 136
HV ++
Sbjct: 131 HVVKK 135
>gi|297796727|ref|XP_002866248.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297312083|gb|EFH42507.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 642
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
D+FP G+RVL VDD+P LR LE++L +C Y VTK + AL++LR + N +D+VISDV
Sbjct: 12 DKFPVGMRVLAVDDNPTCLRKLEELLLRCKYHVTKTMESRKALELLRENSNMFDLVISDV 71
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
MPD DGFKL E +GLEMDLPVIM+S VMKG+ HGAC+YL+KP+ +KEL+NIW
Sbjct: 72 EMPDTDGFKLLE-IGLEMDLPVIMLSAHSDYDSVMKGIIHGACDYLVKPVGLKELQNIWH 130
Query: 132 HVAQQ 136
HV ++
Sbjct: 131 HVVKK 135
>gi|224143763|ref|XP_002325066.1| type-b response regulator [Populus trichocarpa]
gi|222866500|gb|EEF03631.1| type-b response regulator [Populus trichocarpa]
Length = 517
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 88/122 (72%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
PA LRVL +D + + L+ L +L+KC Y VT A AL MLR +KN Y +VI+DV
Sbjct: 24 PADLRVLAIDANVVCLKYLVAILQKCQYRVTSTTLAAEALKMLRENKNDYHVVITDVKRL 83
Query: 75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
DMDGFKL E +GLEMDLPVI++S + +MKG+ HGA +YLLKP+RI+E++NIWQHV
Sbjct: 84 DMDGFKLLEIIGLEMDLPVILVSAEDSQSSIMKGIRHGARDYLLKPVRIQEMQNIWQHVV 143
Query: 135 QQ 136
++
Sbjct: 144 RK 145
>gi|255547920|ref|XP_002515017.1| Two-component response regulator ARR14, putative [Ricinus communis]
gi|223546068|gb|EEF47571.1| Two-component response regulator ARR14, putative [Ricinus communis]
Length = 338
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/128 (57%), Positives = 87/128 (67%), Gaps = 6/128 (4%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
+D FPAGLRV+VVDDDP WL ILE+ML++C EVT C A L +LR ++ GYDIVISD
Sbjct: 10 TDAFPAGLRVVVVDDDPTWLSILERMLKRCSCEVTTCCSARDVLALLRENRYGYDIVISD 69
Query: 71 VHMPDMDGFKLHEQVGLEMDLP-----VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
V MP MD F LH M L ++SVDG VM+G+ GAC YLLKPIR+KE
Sbjct: 70 VIMPGMDVF-LHLLFIGSMLLTEHLYRFTVISVDGERSRVMRGIQLGACEYLLKPIRMKE 128
Query: 126 LRNIWQHV 133
LRNI QHV
Sbjct: 129 LRNICQHV 136
>gi|242093586|ref|XP_002437283.1| hypothetical protein SORBIDRAFT_10g024180 [Sorghum bicolor]
gi|241915506|gb|EER88650.1| hypothetical protein SORBIDRAFT_10g024180 [Sorghum bicolor]
Length = 685
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 95/152 (62%), Gaps = 23/152 (15%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK---NGYDI 66
+D FPAGLRVL V+ D + ++LE+ L+ C Y T A+ ALDMLR K N +D+
Sbjct: 2 AADTFPAGLRVLAVEHDRVCRKVLERQLQYCNYNATMVTNAQTALDMLRERKEYGNQFDL 61
Query: 67 VISDVHMP--DMDGFKLHEQVGLEMDLPVI------------------MMSVDGCTQDVM 106
VIS+V MP +MDGFKL E +GLEMDLPVI ++S + TQ +M
Sbjct: 62 VISNVVMPKPNMDGFKLLELIGLEMDLPVICNKALAQTYFLHFYGTLYVLSANSETQTIM 121
Query: 107 KGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
KG+ HGAC Y++KP+R+++LR IW HV + K
Sbjct: 122 KGIKHGACEYMVKPVRLEQLRGIWTHVVKNSK 153
>gi|9759533|dbj|BAB10999.1| unnamed protein product [Arabidopsis thaliana]
Length = 632
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 92/125 (73%), Gaps = 4/125 (3%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
D+FP G+RVL VDD+P LR LE++L +C Y VTK + AL+MLR + N +D+VISDV
Sbjct: 12 DKFPVGMRVLAVDDNPTCLRKLEELLLRCKYHVTKTMESRKALEMLRENSNMFDLVISDV 71
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
MPD DGFKL E +GLEMDLPVI S VMKG+ HGAC+YL+KP+ +KEL+NIW
Sbjct: 72 EMPDTDGFKLLE-IGLEMDLPVITHSD---YDSVMKGIIHGACDYLVKPVGLKELQNIWH 127
Query: 132 HVAQQ 136
HV ++
Sbjct: 128 HVVKK 132
>gi|359950754|gb|AEV91167.1| MYB-related protein [Triticum aestivum]
Length = 630
Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 72/155 (46%), Positives = 99/155 (63%), Gaps = 26/155 (16%)
Query: 56 MLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACN 115
MLR ++ +D++ISDVHMPDM+GF+L E VGLEMDLPVIMMS D T VMKG+ HGAC+
Sbjct: 1 MLRENRGAFDVIISDVHMPDMNGFRLLELVGLEMDLPVIMMSADSRTDLVMKGIKHGACD 60
Query: 116 YLLKPIRIKELRNIWQHVAQQP----KPFEES--------------DDSY--SVNQG--- 152
YL+KP+R++EL+NIWQHV ++ K E S D+ Y S N G
Sbjct: 61 YLIKPVRMEELKNIWQHVVRKKFGGNKEHEHSGSLDDTDRNRLTNNDNEYASSANDGAED 120
Query: 153 NWRTSNRRKDEEE---EAEKRDDTSTLKKPRFLVS 184
+W++ +++D+EE E E D ++ KK R + S
Sbjct: 121 SWKSQKKKRDKEEDDSELESGDPSNNSKKLRVVWS 155
>gi|145359387|ref|NP_200616.3| response regulator 18 [Arabidopsis thaliana]
gi|332009612|gb|AED96995.1| response regulator 18 [Arabidopsis thaliana]
Length = 618
Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/119 (57%), Positives = 89/119 (74%), Gaps = 1/119 (0%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL VDD+P LR LE++L +C Y VTK + AL+MLR + N +D+VISDV MPD D
Sbjct: 1 MRVLAVDDNPTCLRKLEELLLRCKYHVTKTMESRKALEMLRENSNMFDLVISDVEMPDTD 60
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
GFKL E +GLEMDLPVIM+S VMKG+ HGAC+YL+KP+ +KEL+NIW HV ++
Sbjct: 61 GFKLLE-IGLEMDLPVIMLSAHSDYDSVMKGIIHGACDYLVKPVGLKELQNIWHHVVKK 118
>gi|356554487|ref|XP_003545577.1| PREDICTED: LOW QUALITY PROTEIN: two-component response regulator
ARR12-like [Glycine max]
Length = 379
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 85/125 (68%), Gaps = 2/125 (1%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
D+FP GL V+ +DDD + L +LE ++ KC Y VT N+A L MLR + N +D++ISD
Sbjct: 73 GDRFPVGLCVVAIDDDQMCLTVLENLIHKCHYNVTTTNQAIKVLXMLRKNINKFDLLISD 132
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVI--MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
V++PDMDGFKL E VGL+MDLP I + + + V GAC YL KPIRI+EL+N
Sbjct: 133 VNIPDMDGFKLLELVGLQMDLPFITKIKHLYSVFTFIQLDVIQGACEYLTKPIRIEELQN 192
Query: 129 IWQHV 133
IW+HV
Sbjct: 193 IWKHV 197
>gi|358345518|ref|XP_003636824.1| Response regulator [Medicago truncatula]
gi|358348887|ref|XP_003638473.1| Response regulator [Medicago truncatula]
gi|355502759|gb|AES83962.1| Response regulator [Medicago truncatula]
gi|355504408|gb|AES85611.1| Response regulator [Medicago truncatula]
Length = 240
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 94/133 (70%), Gaps = 1/133 (0%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
SD+FP G+RVL VD D L LE LR C Y VT ++A+ AL MLR +K+ +D+VI+D
Sbjct: 5 SDRFPIGMRVLAVDGDSTHLSDLETRLRSCQYHVTTTSQAKTALTMLRENKDKFDLVIAD 64
Query: 71 VHMPDMDGFKLHEQVGLEMDLP-VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
VH+PDMDG KL E V LE DLP V+M+S + VMK V HGA ++L+KP+R++EL+ I
Sbjct: 65 VHLPDMDGLKLLELVELETDLPVVVMLSESSDNELVMKAVFHGASDFLVKPVRLQELKTI 124
Query: 130 WQHVAQQPKPFEE 142
WQHV ++ K E+
Sbjct: 125 WQHVIRKKKDNED 137
>gi|226875201|gb|ACO88948.1| cytokinin B-type response regulator 5 [Vitis vinifera]
Length = 81
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/81 (76%), Positives = 68/81 (83%)
Query: 26 DPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQV 85
DP WL+ILEKML+KCLYEVT C A AL++LR K+GYDIVISDV+MPDMDGFKL E V
Sbjct: 1 DPTWLKILEKMLKKCLYEVTICGLARDALNLLRERKDGYDIVISDVNMPDMDGFKLLELV 60
Query: 86 GLEMDLPVIMMSVDGCTQDVM 106
GLEMDLPVIMMSVDG T VM
Sbjct: 61 GLEMDLPVIMMSVDGETSRVM 81
>gi|90658417|gb|ABD97105.1| SRR392 [Striga asiatica]
Length = 453
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/134 (53%), Positives = 88/134 (65%), Gaps = 23/134 (17%)
Query: 73 MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
MPDMDGFKL E VGLEMDLPVIMMS D VMKGVTHGAC+YL+KP+R++ L+NIWQH
Sbjct: 1 MPDMDGFKLLEHVGLEMDLPVIMMSADDSKNVVMKGVTHGACDYLIKPVRMEALKNIWQH 60
Query: 133 VA----------------------QQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKR 170
V +QPK E+ D S S N+GN S++R+ E+EE E +
Sbjct: 61 VVRKKKYEWKEKEQEQSGSVEDGERQPKQ-EDVDYSSSANEGNNWKSSKRRKEDEEGEDK 119
Query: 171 DDTSTLKKPRFLVS 184
+DTSTLKKPR + S
Sbjct: 120 EDTSTLKKPRVVWS 133
>gi|109631200|gb|ABG35776.1| SRR380 [Striga asiatica]
Length = 432
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 83/133 (62%), Gaps = 23/133 (17%)
Query: 73 MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
MPDMDGFKL EQVGLEMDLPVIM+S + + VMKGVTHGAC+YL+KP+RI+ELRNIWQH
Sbjct: 1 MPDMDGFKLLEQVGLEMDLPVIMLSANSDPKLVMKGVTHGACDYLVKPVRIEELRNIWQH 60
Query: 133 V--------------AQQPKPFEESDDSY------SVNQGNWRTSNRRKDEE---EEAEK 169
V A Q KP + S + + +Q +RKD+E E+ +
Sbjct: 61 VIRRKKFVSKNENKSADQSKPNQASGEGQGGAIPDNGDQNGKTNVRKRKDDENVSEDGNE 120
Query: 170 RDDTSTLKKPRFL 182
+D +T KKPR +
Sbjct: 121 NEDPATQKKPRVV 133
>gi|356573692|ref|XP_003554991.1| PREDICTED: two-component response regulator ARR2-like [Glycine max]
Length = 315
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 101/179 (56%), Gaps = 11/179 (6%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
VS QF GL V+ VDDD L I+++M KC Y V + A AL+ + +K+ D+++
Sbjct: 7 VSFQF-EGLWVVAVDDDTTILEIIKQMGFKCHYRVATFSDAPDALNYVLENKDRIDVILV 65
Query: 70 DVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
DVH+P+MDG++ + + E+D+PVI+MSVDG T V K +THGAC+Y KP + + +
Sbjct: 66 DVHLPNMDGYEFLKHINKEIDIPVIIMSVDGSTSAVRKAITHGACDYWTKPFSENQFKIM 125
Query: 130 WQHVAQ--------QPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKPR 180
W+HVA Q K F E + SV N + +E++ D + KKPR
Sbjct: 126 WKHVAMKAWNEKKLQKKDFSEF--ASSVLDANLKDQKEISSNSKESDVDDCDAQPKKPR 182
>gi|147866630|emb|CAN81576.1| hypothetical protein VITISV_027774 [Vitis vinifera]
Length = 137
Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 79/116 (68%), Gaps = 4/116 (3%)
Query: 3 PASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN 62
P +V VSDQF GL+VLVVDDD LRILE+MLR Y VT C++A IAL++LR K+
Sbjct: 25 PYKVNVVVSDQFSTGLKVLVVDDDVTRLRILEQMLR---YHVTTCSQATIALNILREKKD 81
Query: 63 GYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118
+DIV+SD +P M +KL E VGLE DLP+IMMS DG T VM+ +H C L
Sbjct: 82 CFDIVLSDARVPGMIDYKLLEHVGLETDLPIIMMSADGRTGAVMRD-SHSWCMQLF 136
>gi|125552240|gb|EAY97949.1| hypothetical protein OsI_19867 [Oryza sativa Indica Group]
Length = 315
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 103/185 (55%), Gaps = 18/185 (9%)
Query: 2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK 61
S S +A + P G+RVL++D+ +L+I+ K+L C Y+VT A A++ L +
Sbjct: 9 SSNKSKLADEEFSPVGMRVLLIDESTTYLKIITKLLLNCGYKVTPKTAARDAVEELHENP 68
Query: 62 NGYDIVISDVHMP-DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
YD+V+++VH P +DGF L + G +MDLPV++ S D + V+K V GAC+YL+KP
Sbjct: 69 WSYDMVLTEVHAPAGIDGFNLLQYAGTDMDLPVVVFSADDDKRTVLKCVNSGACDYLVKP 128
Query: 121 IRIKELRNIWQHVAQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKP- 179
+R +EL+NIWQHV ++ N R+ RR + K + + P
Sbjct: 129 LRHEELKNIWQHVYRR----------------NLRSGGRRAAAAGNSSKGEIKKRFRWPK 172
Query: 180 RFLVS 184
RF ++
Sbjct: 173 RFRIA 177
>gi|414865597|tpg|DAA44154.1| TPA: putative two-component response regulator family protein
[Zea mays]
Length = 114
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 70/90 (77%)
Query: 5 SSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY 64
+++ A FP G++VLVVDDDP L +L++ML +C Y+VT C +A AL MLR ++ G+
Sbjct: 2 AAAEARGADFPVGMKVLVVDDDPTCLVVLKRMLLECRYDVTTCPQATRALTMLRENRRGF 61
Query: 65 DIVISDVHMPDMDGFKLHEQVGLEMDLPVI 94
D++ISDVHMPDMDGF+L E VGLEMDLPVI
Sbjct: 62 DVIISDVHMPDMDGFRLLELVGLEMDLPVI 91
>gi|15239829|ref|NP_199735.1| putative two-component response regulator-like APRR4 [Arabidopsis
thaliana]
gi|52783215|sp|Q9FJ16.1|APRR4_ARATH RecName: Full=Putative two-component response regulator-like APRR4;
AltName: Full=Pseudo-response regulator 4
gi|10177153|dbj|BAB10342.1| unnamed protein product [Arabidopsis thaliana]
gi|332008405|gb|AED95788.1| putative two-component response regulator-like APRR4 [Arabidopsis
thaliana]
Length = 292
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 84/126 (66%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
S FP GLRVLV D+DP +L ILE+ L+K Y+VT CN A+ LR +N +D+ +
Sbjct: 35 SSNFPEGLRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQ 94
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
V+ + D F+ ++G EMDLP+I++S D + V K + +GA +YL+KPIR ++LR ++
Sbjct: 95 VNNAEGDIFRFLSEIGSEMDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVF 154
Query: 131 QHVAQQ 136
+H+ ++
Sbjct: 155 KHLVKK 160
>gi|147775384|emb|CAN78184.1| hypothetical protein VITISV_031283 [Vitis vinifera]
Length = 609
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 63/171 (36%), Positives = 95/171 (55%), Gaps = 10/171 (5%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
GL ++VVDDD I L I+ +L+ YEV N A+ AL LR N + ++++DVHMP+M
Sbjct: 20 GLHIMVVDDDVICLSIVAGILKTWKYEVVTVNSAQDALTTLRTRSNFFHLIVTDVHMPEM 79
Query: 77 DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
DGF+ V E LPV+MMS D +++G+ GA Y++KP+ +L+N+WQ+
Sbjct: 80 DGFEFQRLVHEEFHLPVVMMSADDKESSMLRGLEAGAAFYIVKPVNYDDLKNLWQYAVGX 139
Query: 137 PKP-----FEESDDSYSVNQGNWRTSNRRKDE---EEEAEKRDDT-STLKK 178
K +E + + + +TSN + EE+ KRD TLKK
Sbjct: 140 KKGKSHIVMQEIERTQGASXLE-KTSNNEVESLMNEEKHNKRDSKRKTLKK 189
>gi|297792183|ref|XP_002863976.1| hypothetical protein ARALYDRAFT_357174 [Arabidopsis lyrata subsp.
lyrata]
gi|297309811|gb|EFH40235.1| hypothetical protein ARALYDRAFT_357174 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 98/176 (55%), Gaps = 16/176 (9%)
Query: 13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH 72
FP GLR+LV D+D L++LE L+K Y+VT CN A+ LR +N +DI I +
Sbjct: 34 NFPEGLRMLVFDEDSSHLQMLETNLQKFQYQVTICNEENKAMYALRNHRNRFDIAIIQGN 93
Query: 73 MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
D D F+ ++G EMDLP+I++S D Q VMK + +GA +YL+KPI+ +ELR I++H
Sbjct: 94 NSDGDMFRFLSEIGSEMDLPIIIISEDKSVQSVMKWMINGATDYLIKPIKPEELRIIFKH 153
Query: 133 VAQQPK--------PFEE---SDDSYSVNQGNWRTSNRRK-----DEEEEAEKRDD 172
+ ++ + EE + S SV R N+RK D E E R D
Sbjct: 154 LVKKVRERRSVVTGEAEEKAGGEKSSSVGDSTIRNPNKRKRSMCLDAEVNEEDRHD 209
>gi|357488511|ref|XP_003614543.1| Two-component response regulator ARR1 [Medicago truncatula]
gi|355515878|gb|AES97501.1| Two-component response regulator ARR1 [Medicago truncatula]
Length = 304
Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 96/169 (56%), Gaps = 16/169 (9%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP GL V+ +D D +L +E+M +C Y+VTKCN A AL++L K+ +D+++ D HM
Sbjct: 10 FPDGLNVIAIDHDTTFLNTIEEMCNRCHYQVTKCNTASEALNLLE-RKDCFDVMLIDAHM 68
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
P+MD + + ++++PVI S V K +T+GAC Y KP+ ++ + +WQHV
Sbjct: 69 PNMDAYDFVQHATGQLNIPVISNS-------VTKSITYGACEYWTKPLYEEQFKIMWQHV 121
Query: 134 AQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKPRFL 182
A+ K E+ SV G+ RK E ++ D+ +KKPR +
Sbjct: 122 AR--KGLRENKKHKSV--GSLDVQGHRKRERDD----DNVPNVKKPRLM 162
>gi|297847198|ref|XP_002891480.1| hypothetical protein ARALYDRAFT_474061 [Arabidopsis lyrata subsp.
lyrata]
gi|297337322|gb|EFH67739.1| hypothetical protein ARALYDRAFT_474061 [Arabidopsis lyrata subsp.
lyrata]
Length = 530
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 84/133 (63%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
S ++ QFP VLVVD + L +++++++ Y+VT AE AL L K+
Sbjct: 20 TSEITSLLSQFPGNTNVLVVDTNFTTLLNMKQIMKQYAYQVTIETDAEKALAYLTSCKHE 79
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+IVI D HMP +DG + + +G +MDLPV++MS D T+ VMK +GAC+Y++KP++
Sbjct: 80 INIVIWDFHMPGIDGLQALKSIGSKMDLPVVIMSDDNQTESVMKATINGACDYVVKPVKE 139
Query: 124 KELRNIWQHVAQQ 136
+ + NIWQH+ ++
Sbjct: 140 EVIANIWQHIVRK 152
>gi|31338862|dbj|BAC77081.1| B-type response regulator [Oryza glaberrima]
Length = 341
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 76/120 (63%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
+P GLRVLV+DDD +L ++E +L KC Y+VT A+ + + D+VISD
Sbjct: 7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
P DG + ++V + +P ++M+ G T VMK V +GA ++LLKP+RI+EL NIWQH+
Sbjct: 67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGASDFLLKPVRIEELSNIWQHI 126
>gi|31338858|dbj|BAC77079.1| B-type response regulator [Oryza sativa Japonica Group]
Length = 341
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 78/123 (63%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
+P GLRVLV+DDD +L ++E +L KC Y+VT A+ + + D+VISD
Sbjct: 7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
P DG + ++V + +P ++M+ G T VMK V +GA ++LLKP+RI+EL NIWQH+
Sbjct: 67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 134 AQQ 136
++
Sbjct: 127 FRK 129
>gi|75327667|sp|Q7Y0W5.1|EHD1_ORYSJ RecName: Full=Two-component response regulator EHD1; AltName:
Full=Protein EARLY HEADING DATE 1
gi|31338856|dbj|BAC77078.1| B-type response regulator [Oryza sativa Japonica Group]
Length = 341
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 78/123 (63%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
+P GLRVLV+DDD +L ++E +L KC Y+VT A+ + + D+VISD
Sbjct: 7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
P DG + ++V + +P ++M+ G T VMK V +GA ++LLKP+RI+EL NIWQH+
Sbjct: 67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 134 AQQ 136
++
Sbjct: 127 FRK 129
>gi|75327665|sp|Q7Y0W3.1|EHD1_ORYSI RecName: Full=Two-component response regulator EHD1; AltName:
Full=Protein EARLY HEADING DATE 1
gi|31338860|dbj|BAC77080.1| B-type response regulator [Oryza sativa Indica Group]
Length = 341
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 78/123 (63%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
+P GLRVLV+DDD +L ++E +L KC Y+VT A+ + + D+VISD
Sbjct: 7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
P DG + ++V + +P ++M+ G T VMK V +GA ++LLKP+RI+EL NIWQH+
Sbjct: 67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 134 AQQ 136
++
Sbjct: 127 FRK 129
>gi|51038103|gb|AAT93906.1| hypothetical protein [Oryza sativa Japonica Group]
gi|222631502|gb|EEE63634.1| hypothetical protein OsJ_18451 [Oryza sativa Japonica Group]
Length = 368
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 18/153 (11%)
Query: 2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLY-----------------EV 44
S S +A + P G+RVL++D+ +L+I+ K+L C Y EV
Sbjct: 9 SSNKSKLADEEFSPVGMRVLLIDESTTYLKIITKLLLNCGYKGLTVTNFEITYVWRVDEV 68
Query: 45 TKCNRAEIALDMLRMSKNGYDIVISDVHMP-DMDGFKLHEQVGLEMDLPVIMMSVDGCTQ 103
T A A++ L + YD+V+++VH P +DGF L + G +MDLPV++ S D +
Sbjct: 69 TPKTAARDAVEELHENPWSYDMVLTEVHAPAGIDGFNLLQYAGTDMDLPVVVFSADDDKR 128
Query: 104 DVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
V+K V GAC+YL+KP+R +EL+NIWQHV ++
Sbjct: 129 TVLKCVNSGACDYLVKPLRHEELKNIWQHVYRR 161
>gi|357519851|ref|XP_003630214.1| Two-component response regulator ARR2 [Medicago truncatula]
gi|355524236|gb|AET04690.1| Two-component response regulator ARR2 [Medicago truncatula]
Length = 265
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 76/128 (59%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
++ QFP L VLVVD D L +M C Y+VT C++A A +L +K D+V+
Sbjct: 9 SLPSQFPEDLNVLVVDHDTDVLNAAVEMSIPCNYQVTTCSKASFAFKLLTETKGCVDVVL 68
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
+ MPDMD + V ++++ VIMM DG T VMK VT+GAC + +KP +++N
Sbjct: 69 IEAQMPDMDSYDFVRHVTQQINISVIMMCDDGSTNAVMKAVTNGACEFWIKPFIENQIKN 128
Query: 129 IWQHVAQQ 136
+WQ VA++
Sbjct: 129 MWQCVARK 136
>gi|357519887|ref|XP_003630232.1| Two-component response regulator ARR2 [Medicago truncatula]
gi|355524254|gb|AET04708.1| Two-component response regulator ARR2 [Medicago truncatula]
Length = 234
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 74/124 (59%)
Query: 13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH 72
QFP L VLVVD D L +M C Y+VT C++A A +L +K D+V+ +
Sbjct: 13 QFPEDLNVLVVDHDTDVLNAAVEMSIPCNYQVTTCSKASFAFKLLTETKGCVDVVLIEAQ 72
Query: 73 MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
MPDMD + V ++++ VIMM DG T VMK VT+GAC + +KP +++N+WQ
Sbjct: 73 MPDMDSYDFVRHVTQQINISVIMMCDDGSTNAVMKAVTNGACEFWIKPFIENQIKNMWQC 132
Query: 133 VAQQ 136
VA++
Sbjct: 133 VARK 136
>gi|334183176|ref|NP_001185179.1| protein response regulator 19 [Arabidopsis thaliana]
gi|332194282|gb|AEE32403.1| protein response regulator 19 [Arabidopsis thaliana]
Length = 622
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 83/133 (62%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
S ++ QFP VLVVD + L +++++++ Y+V+ AE AL L K+
Sbjct: 20 TSEITSLLSQFPGNTNVLVVDTNFTTLLNMKQIMKQYAYQVSIETDAEKALAFLTSCKHE 79
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+IVI D HMP +DG + + + ++DLPV++MS D T+ VMK +GAC+Y++KP++
Sbjct: 80 INIVIWDFHMPGIDGLQALKSITSKLDLPVVIMSDDNQTESVMKATFYGACDYVVKPVKE 139
Query: 124 KELRNIWQHVAQQ 136
+ + NIWQH+ ++
Sbjct: 140 EVMANIWQHIVRK 152
>gi|15222067|ref|NP_175345.1| protein response regulator 19 [Arabidopsis thaliana]
gi|332194281|gb|AEE32402.1| protein response regulator 19 [Arabidopsis thaliana]
Length = 608
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 83/133 (62%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
S ++ QFP VLVVD + L +++++++ Y+V+ AE AL L K+
Sbjct: 20 TSEITSLLSQFPGNTNVLVVDTNFTTLLNMKQIMKQYAYQVSIETDAEKALAFLTSCKHE 79
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+IVI D HMP +DG + + + ++DLPV++MS D T+ VMK +GAC+Y++KP++
Sbjct: 80 INIVIWDFHMPGIDGLQALKSITSKLDLPVVIMSDDNQTESVMKATFYGACDYVVKPVKE 139
Query: 124 KELRNIWQHVAQQ 136
+ + NIWQH+ ++
Sbjct: 140 EVMANIWQHIVRK 152
>gi|7770351|gb|AAF69721.1|AC016041_26 F27J15.4 [Arabidopsis thaliana]
Length = 612
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 83/133 (62%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
S ++ QFP VLVVD + L +++++++ Y+V+ AE AL L K+
Sbjct: 20 TSEITSLLSQFPGNTNVLVVDTNFTTLLNMKQIMKQYAYQVSIETDAEKALAFLTSCKHE 79
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+IVI D HMP +DG + + + ++DLPV++MS D T+ VMK +GAC+Y++KP++
Sbjct: 80 INIVIWDFHMPGIDGLQALKSITSKLDLPVVIMSDDNQTESVMKATFYGACDYVVKPVKE 139
Query: 124 KELRNIWQHVAQQ 136
+ + NIWQH+ ++
Sbjct: 140 EVMANIWQHIVRK 152
>gi|50400670|sp|Q9M9B9.2|ARR19_ARATH RecName: Full=Putative two-component response regulator ARR19
Length = 407
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 83/133 (62%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
S ++ QFP VLVVD + L +++++++ Y+V+ AE AL L K+
Sbjct: 20 TSEITSLLSQFPGNTNVLVVDTNFTTLLNMKQIMKQYAYQVSIETDAEKALAFLTSCKHE 79
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+IVI D HMP +DG + + + ++DLPV++MS D T+ VMK +GAC+Y++KP++
Sbjct: 80 INIVIWDFHMPGIDGLQALKSITSKLDLPVVIMSDDNQTESVMKATFYGACDYVVKPVKE 139
Query: 124 KELRNIWQHVAQQ 136
+ + NIWQH+ ++
Sbjct: 140 EVMANIWQHIVRK 152
>gi|255539557|ref|XP_002510843.1| two-component system sensor histidine kinase/response regulator,
putative [Ricinus communis]
gi|223549958|gb|EEF51445.1| two-component system sensor histidine kinase/response regulator,
putative [Ricinus communis]
Length = 754
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 75/121 (61%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+++L+VDDD L I+ ML+ C +V AL L+ S +D+VI+D+HMP M+
Sbjct: 21 VQILIVDDDAPTLGIVSSMLKTCSLQVVTVKNPLDALSSLQSSDGAFDLVITDLHMPGMN 80
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
G +L +Q+ E +PV++MS DG +++ + GA Y++KP+ +++L+N+WQ+
Sbjct: 81 GIQLQKQIDEEFKIPVVIMSSDGKRSAILESLESGAVYYMVKPVNLRDLKNVWQYAMASK 140
Query: 138 K 138
K
Sbjct: 141 K 141
>gi|449528748|ref|XP_004171365.1| PREDICTED: uncharacterized protein LOC101224737 [Cucumis sativus]
Length = 631
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ +L+VDDD L I+ MLR C Y+V ALD LR K +D+V++D+HMP M+
Sbjct: 9 IHILLVDDDATSLAIVSAMLRLCKYQVVTLKDPMEALDTLRARKGYFDLVVTDLHMPQMN 68
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
G +L ++V E LPVIMMS D ++K + G Y++KPI + +++++WQ+ A P
Sbjct: 69 GLQLQKKVMQEFKLPVIMMSADEKPSVILKSLEEGVAFYMVKPISLDDVKHVWQY-AITP 127
Query: 138 K 138
K
Sbjct: 128 K 128
>gi|449446191|ref|XP_004140855.1| PREDICTED: uncharacterized protein LOC101217116 [Cucumis sativus]
Length = 634
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ +L+VDDD L I+ MLR C Y+V ALD LR K +D+V++D+HMP M+
Sbjct: 9 IHILLVDDDATSLAIVSAMLRLCKYQVVTLKDPMEALDTLRARKGYFDLVVTDLHMPQMN 68
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
G +L ++V E LPVIMMS D ++K + G Y++KPI + +++++WQ+ A P
Sbjct: 69 GLQLQKKVMQEFKLPVIMMSADEKPSVILKSLEEGVAFYMVKPISLDDVKHVWQY-AITP 127
Query: 138 K 138
K
Sbjct: 128 K 128
>gi|224136878|ref|XP_002322438.1| type-b response regulator [Populus trichocarpa]
gi|222869434|gb|EEF06565.1| type-b response regulator [Populus trichocarpa]
Length = 716
Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 8/140 (5%)
Query: 1 MSPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYE--------VTKCNRAEI 52
M+ + SS + + +++LVVDDD L I+ ML+ C Y+ V
Sbjct: 1 MASSQSSNIIQNSSLLKIKILVVDDDSTSLSIVSAMLKTCSYKENRKLELFVVTVKNPFD 60
Query: 53 ALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHG 112
AL LR+ K +D+V++D+HMP+M+G +L +QV E LPVI+MS D + +++ + G
Sbjct: 61 ALSTLRLKKGLFDLVVTDLHMPEMNGMELQQQVDEEFKLPVIIMSSDDSEKVILRTLEGG 120
Query: 113 ACNYLLKPIRIKELRNIWQH 132
A Y++KPI +L+N+WQ+
Sbjct: 121 AAFYIVKPINKDDLKNVWQY 140
>gi|297821174|ref|XP_002878470.1| hypothetical protein ARALYDRAFT_486765 [Arabidopsis lyrata subsp.
lyrata]
gi|297324308|gb|EFH54729.1| hypothetical protein ARALYDRAFT_486765 [Arabidopsis lyrata subsp.
lyrata]
Length = 431
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 102/183 (55%), Gaps = 15/183 (8%)
Query: 12 DQFPA-GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
++FP +RVL+VD D L ++ ++ + Y+VTK E A+ L +K D+VI D
Sbjct: 34 EEFPTTSIRVLLVDADSNSLLPMKNLMIQYSYQVTKYEDGEEAMAFLMKNKQEIDLVIWD 93
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
HMPD++G +G EMDLPV++MS D + VM+ + +GAC++L+KP+ + + +W
Sbjct: 94 FHMPDINGLDALNTIGKEMDLPVVIMSHDHKKETVMESIKYGACDFLVKPVSKEVIAVLW 153
Query: 131 QHVAQQ-------PKPFE----ESD-DSY-SVNQGNWRTSNRRKDEEEEAEKRDDTSTLK 177
+HV ++ KP E ESD D Y + Q N SN + +K + +T K
Sbjct: 154 RHVYRKRMSKSGLDKPGESGTVESDPDEYDDLGQDNLYQSNEEGSKNSSDQKGEKPAT-K 212
Query: 178 KPR 180
KPR
Sbjct: 213 KPR 215
>gi|226875203|gb|ACO88949.1| cytokinin B-type response regulator 6 [Vitis vinifera]
Length = 58
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/57 (78%), Positives = 50/57 (87%)
Query: 30 LRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG 86
L ILEKMLR CLYEVTKCNRAE AL +LR +K+G+DIVISDVHMPDMDGFKL E +G
Sbjct: 2 LMILEKMLRTCLYEVTKCNRAETALSLLRGNKSGFDIVISDVHMPDMDGFKLLEHIG 58
>gi|414589528|tpg|DAA40099.1| TPA: hypothetical protein ZEAMMB73_417245 [Zea mays]
Length = 899
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 3/86 (3%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNR---AEIALDMLRMSKNGYDIVI 68
DQFP G+RVL VDDDP L++LE +L +C Y T + ++LR K+ +D VI
Sbjct: 89 DQFPVGMRVLAVDDDPTCLKVLENLLFRCQYHGTSPDNNGPGSHCPELLREKKDQFDPVI 148
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVI 94
S+VHMPDMDGFKL E VGLEMDLP I
Sbjct: 149 SNVHMPDMDGFKLLELVGLEMDLPGI 174
>gi|242093584|ref|XP_002437282.1| hypothetical protein SORBIDRAFT_10g024170 [Sorghum bicolor]
gi|241915505|gb|EER88649.1| hypothetical protein SORBIDRAFT_10g024170 [Sorghum bicolor]
Length = 158
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 71/115 (61%), Gaps = 7/115 (6%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK---NGYDI 66
+D FPAGLRVL V+ D + +ILE+ L+ C Y T A+ ALDMLR K N +D+
Sbjct: 25 AADTFPAGLRVLAVEHDRVCSKILERQLKYCNYNATMVTNAQTALDMLRERKEYGNQFDL 84
Query: 67 VISDVHM--PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119
VIS+V M P+MDGFKL E +GLEMDLPVI V + M G N++LK
Sbjct: 85 VISNVAMPKPNMDGFKLLELIGLEMDLPVINSEVATRGGNCMSAARGG--NHMLK 137
>gi|224063953|ref|XP_002301318.1| predicted protein [Populus trichocarpa]
gi|222843044|gb|EEE80591.1| predicted protein [Populus trichocarpa]
Length = 458
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
+ F G+R+LVV+ DP LRI+ KML+ YEVT RA AL +LR ++ ++++ +
Sbjct: 16 ASSFAEGVRILVVESDPTCLRIVSKMLQAFGYEVTTATRATDALHILREKEDEINLILIE 75
Query: 71 VHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
H+PDMD +++ E V + LP+++ S D ++ + GA YL+KPI +++N+
Sbjct: 76 THLPDMDQYEIIETVRAMSSSLPIVVFSADNNVSAMLGWLYKGAALYLMKPIVKNDVKNL 135
Query: 130 WQ 131
WQ
Sbjct: 136 WQ 137
>gi|224130168|ref|XP_002320769.1| pseudo response regulator [Populus trichocarpa]
gi|222861542|gb|EEE99084.1| pseudo response regulator [Populus trichocarpa]
Length = 504
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 75/121 (61%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
+ FP G+R+LVV+ DP LRI+ KML+ YEVT RA AL +LR ++ ++++ +
Sbjct: 16 AGSFPIGVRILVVESDPTCLRIVSKMLQAFGYEVTTATRATDALRILREKEDEINLILIE 75
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
+PDM+ +++ E +G LP+++ S D ++ + GA YL+KPI +++N+W
Sbjct: 76 TRLPDMNQYEILETLGELSSLPIVVFSADNNESAMLGCLYKGAALYLMKPIIKNDVKNLW 135
Query: 131 Q 131
Q
Sbjct: 136 Q 136
>gi|147782854|emb|CAN61302.1| hypothetical protein VITISV_003290 [Vitis vinifera]
Length = 594
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 61/200 (30%), Positives = 99/200 (49%), Gaps = 41/200 (20%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYE----VTKCN------------------------ 48
+RV+VVDDD I L I+ ML+ Y+ V CN
Sbjct: 20 AIRVMVVDDDIICLSIVAGMLKTWKYQDMLNVVFCNFIKIIRQGCIRGEEASTRNGISSS 79
Query: 49 -----RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQ 103
AE AL LR N + +V++DVHMP MDGF+ +QV E +LPV+MMS D
Sbjct: 80 VVSVKNAEDALITLRTRSNFFHLVVTDVHMPKMDGFEFQKQVREEFNLPVVMMSADDKES 139
Query: 104 DVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFEESDDSYSVNQGNWRTSNRRKDE 163
+++G+ GA Y++KP+ +L+++WQ+ A P+ SV+ + N+R +
Sbjct: 140 SILRGLEAGAAFYIVKPVNYDDLKDLWQY-ALSPR-------KGSVSVXHEEMQNKRDSK 191
Query: 164 EEEAEKRDDTSTLKKPRFLV 183
++ +K ++ + +K +V
Sbjct: 192 KKAGKKVNEGNEQEKSEAIV 211
>gi|147798455|emb|CAN72192.1| hypothetical protein VITISV_005693 [Vitis vinifera]
Length = 790
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 80/133 (60%), Gaps = 4/133 (3%)
Query: 4 ASSSVAVSDQFPAGLR---VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS 60
+SSSV +++F G R VLVVD DP L I+ MLR YEV +RA AL M
Sbjct: 505 SSSSVTPTEEF-KGHRDICVLVVDCDPTCLMIVSGMLRALTYEVLTVDRAVDALAMTLEG 563
Query: 61 KNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
G D+V++++HMPDM G L +++ LPV++MS D ++K + GA YL+KP
Sbjct: 564 GCGVDLVMTELHMPDMYGLDLLDEIRRTSKLPVVIMSADSNEDVMLKSLRRGAEYYLVKP 623
Query: 121 IRIKELRNIWQHV 133
+ ++++ N WQ+V
Sbjct: 624 VLMEDVTNFWQYV 636
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 12/126 (9%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
VLVVD DP L + MLR Y+V R AL M+ K+ D+V++++HMPDMDG
Sbjct: 23 VLVVDCDPTSLMTISGMLRALTYQVVTVERVTDALAMILERKDEVDLVMTELHMPDMDGL 82
Query: 80 KLHEQVGLEMDLPVI------------MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
+L +++ LPV+ +MS D +++ + GA Y+ KP+ + ++
Sbjct: 83 QLLDEIQKTSKLPVVNFFFFLDGNGNPVMSADAEEDAMLRSLNKGATYYMXKPVEMGSIK 142
Query: 128 NIWQHV 133
N+WQ+V
Sbjct: 143 NLWQYV 148
>gi|414589529|tpg|DAA40100.1| TPA: hypothetical protein ZEAMMB73_417245 [Zea mays]
Length = 443
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 3/86 (3%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNR---AEIALDMLRMSKNGYDIVI 68
DQFP G+RVL VDDDP L++LE +L +C Y T + ++LR K+ +D VI
Sbjct: 89 DQFPVGMRVLAVDDDPTCLKVLENLLFRCQYHGTSPDNNGPGSHCPELLREKKDQFDPVI 148
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVI 94
S+VHMPDMDGFKL E VGLEMDLP I
Sbjct: 149 SNVHMPDMDGFKLLELVGLEMDLPGI 174
>gi|412992495|emb|CCO18475.1| predicted protein [Bathycoccus prasinos]
Length = 1199
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 76/119 (63%), Gaps = 4/119 (3%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ VLVVDD+ I + ++LRKC Y VT C A+++LR ++++++DV MPD+D
Sbjct: 51 IHVLVVDDERICRAVTSQVLRKCGYRVTTCESGAEAIELLRRGTE-FNLLLTDVMMPDID 109
Query: 78 GFKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G KL + V LPVIMMS + ++ V + V GA +YLLKP+ +K+++ +WQHV
Sbjct: 110 GPKLLQHVRHHSQFSQLPVIMMSANQHSEIVFECVRSGADDYLLKPVTVKQVKLLWQHV 168
>gi|413943652|gb|AFW76301.1| hypothetical protein ZEAMMB73_695347 [Zea mays]
Length = 106
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 62/84 (73%), Gaps = 3/84 (3%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG---YDIVISD 70
FPAGLRVLVVDDD + L++LE+ L+ C Y V A AL+MLR K+ +D+VISD
Sbjct: 6 FPAGLRVLVVDDDRVCLKVLERQLKCCNYNVMVVTDARTALEMLRERKDDGDQFDLVISD 65
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVI 94
V MP+MDGF+L E +G+EMDLPVI
Sbjct: 66 VVMPNMDGFELLELIGVEMDLPVI 89
>gi|224120138|ref|XP_002318254.1| type-b response regulator [Populus trichocarpa]
gi|222858927|gb|EEE96474.1| type-b response regulator [Populus trichocarpa]
Length = 658
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 37/216 (17%)
Query: 1 MSPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYE--------VTKCNRAEI 52
M+ SS A+S P + +L+VDDD L ++ L+ Y+ V +
Sbjct: 1 MASTQSSNALSSSLPK-IHILIVDDDSTSLSVVSATLKTVSYKDNRNLELIVVTVKKPFD 59
Query: 53 ALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHG 112
AL +LR+ K +D+V+SD+HMP+M+G +L +QV E LPVI+MS D + + + G
Sbjct: 60 ALSILRLKKGLFDLVVSDLHMPEMNGMELQKQVEEEFKLPVIIMSSDESKNVISRSLEGG 119
Query: 113 ACNYLLKPIRIKELRNIWQHV----------------AQQPK---------PFEESDDSY 147
A Y++KP +L+N+W + +++P E+ + +
Sbjct: 120 AAFYIVKPANKVDLKNVWHYAVAIKTGNSLSIKEIEGSREPSYSSTLVERLSLEDVNSAT 179
Query: 148 SVNQGNWRTSNRRKDEEEEA---EKRDDTSTLKKPR 180
S+N N RK+E + ++ D KKP+
Sbjct: 180 SINDEKRYRKNGRKEERKSTKDDQEVDSQPASKKPK 215
>gi|384252785|gb|EIE26260.1| hypothetical protein COCSUDRAFT_64410 [Coccomyxa subellipsoidea
C-169]
Length = 428
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 86/147 (58%), Gaps = 6/147 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS-KNGYDIVISDVHMPDMDG 78
VL+ +DD + LRI+E++L++C Y VT + ALD+L+ + K+ +D++++D+ MP +DG
Sbjct: 15 VLLAEDDDLTLRIVEQLLKQCNYRVTVARNGQEALDILQHNDKHCFDLILTDIMMPKVDG 74
Query: 79 FKLHEQVG---LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135
L +V + LPVI+MS + + + K T GA +YL+KPIR E+ +W H+ +
Sbjct: 75 MDLVCEVNQRKVWSHLPVIVMSSEQSQEAICKAFTVGAADYLIKPIRKNEVATLWHHIWR 134
Query: 136 QPKPFEESDDSYSVNQGNWRTSNRRKD 162
K ++ + W ++ R D
Sbjct: 135 --KVMAAGTENLEGHAAGWISAKYRHD 159
>gi|308812550|ref|XP_003083582.1| OJ1695_H09.29 gene product (ISS) [Ostreococcus tauri]
gi|116055463|emb|CAL58131.1| OJ1695_H09.29 gene product (ISS) [Ostreococcus tauri]
Length = 297
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%)
Query: 73 MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
MPD+DGFKL E + E++LPV+MMS + + V++G+ HGA +YLLKP+RI+ELRNIWQH
Sbjct: 1 MPDVDGFKLLEIIQFELNLPVLMMSANSDSSVVLRGIIHGAVDYLLKPVRIEELRNIWQH 60
Query: 133 VAQQPKPFEESDDSYSVN 150
V ++ S VN
Sbjct: 61 VVRRDYSARNSGSEDGVN 78
>gi|147765741|emb|CAN73375.1| hypothetical protein VITISV_019100 [Vitis vinifera]
Length = 659
Score = 89.4 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 28/167 (16%)
Query: 28 IWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL 87
I L I+ +LR Y+V AL LR + + +V++DVHMP++DGF+ ++V
Sbjct: 32 ICLSIVAGILRTRRYQVVTVKNPLDALATLRSGSDFFHLVVTDVHMPELDGFEFQKKVQE 91
Query: 88 EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH---------VAQQ-- 136
E LPV+MMS D ++KG+ GA Y++KP+ +L+NIWQ+ V Q
Sbjct: 92 EFQLPVVMMSADDKESSMLKGLEAGAAFYIVKPVNYDDLKNIWQYAVGPRKDNSVDMQDV 151
Query: 137 -PKPFEES------DDSY------SVNQGNWRTSNRRKDEEEEAEKR 170
P P EES DD SVN+ N ++D +++A KR
Sbjct: 152 GPAPEEESPVEKTPDDPVDIESVSSVNEVN----QSKRDPKKKASKR 194
>gi|297741112|emb|CBI31843.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 89.0 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 28/167 (16%)
Query: 28 IWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL 87
I L I+ +LR Y+V AL LR + + +V++DVHMP++DGF+ ++V
Sbjct: 32 ICLSIVAGILRTRRYQVVTVKNPLDALATLRSGSDFFHLVVTDVHMPELDGFEFQKKVQE 91
Query: 88 EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH---------VAQQ-- 136
E LPV+MMS D ++KG+ GA Y++KP+ +L+NIWQ+ V Q
Sbjct: 92 EFQLPVVMMSADDKESSMLKGLEAGAAFYIVKPVNYDDLKNIWQYAVGPRKDNSVDMQDV 151
Query: 137 -PKPFEES------DDSY------SVNQGNWRTSNRRKDEEEEAEKR 170
P P EES DD SVN+ N ++D +++A KR
Sbjct: 152 GPAPEEESPVEKTPDDPVDIESVSSVNEVN----QSKRDPKKKASKR 194
>gi|326518812|dbj|BAJ92567.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 687
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 11/162 (6%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +++ +LRKC Y V A +++R +D+V+++V+MP +
Sbjct: 38 LRVLLVEHDDSTRQVVTALLRKCGYRVAAVADGMKAWEVMRGRAYAFDLVLTEVNMPTLS 97
Query: 78 GFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
G L ++ ++PVIMMS V+K + +GA ++L+KP+R ELRN+WQHV
Sbjct: 98 GIDLLSRIVAADECKNIPVIMMSSQDSIGTVLKCMQNGAVDFLVKPVRKNELRNLWQHVW 157
Query: 135 QQ--------PKPFEESDDSYSVNQGNWRTSNRRKDEEEEAE 168
++ + + SVN G + DEE +A+
Sbjct: 158 RRHSMNSQLNASENNAASNHISVNSGTGSKTGENSDEESDAQ 199
>gi|355469070|gb|ACU42265.2| pseudo response regulator 59 [Pisum sativum]
Length = 494
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V A ++L+ +D+++++V +P +
Sbjct: 45 LRVLLVEADDCTRQIITALLRKCNYKVAAVADGLKAWEILKGRPRNFDLILTEVDLPSVS 104
Query: 78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G+ L + +E D +PVIMMS V K + GA +YL+KPIRI ELRN+WQHV
Sbjct: 105 GYALLSLI-MEHDTCKTIPVIMMSSQDSVSTVYKCMLRGAADYLVKPIRINELRNLWQHV 163
>gi|255928918|gb|ACU42266.1| pseudo response regulator 59 [Pisum sativum]
Length = 469
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V A ++L+ +D+++++V +P +
Sbjct: 20 LRVLLVEADDCTRQIITALLRKCNYKVAAVADGLKAWEILKGRPRNFDLILTEVDLPSVS 79
Query: 78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G+ L + +E D +PVIMMS V K + GA +YL+KPIRI ELRN+WQHV
Sbjct: 80 GYALLSLI-MEHDTCKTIPVIMMSSQDSVSTVYKCMLRGAADYLVKPIRINELRNLWQHV 138
>gi|334715203|gb|AEG90657.1| pseudo-response regulator 37 splice variant c [Sorghum bicolor]
Length = 759
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ VL+V+ D R++ +LR C+Y+V + A + L +N DIV+ +V MP +
Sbjct: 80 INVLLVESDDCTRRVVSALLRHCMYQVISAENGQQAWNYLEDKQNNIDIVLIEVFMPGVS 139
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + ++PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 140 GISLLSRIMSHNICKNIPVIMMSSNDARNTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 198
>gi|334715199|gb|AEG90655.1| pseudo-response regulator 37 splice variant a [Sorghum bicolor]
Length = 761
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ VL+V+ D R++ +LR C+Y+V + A + L +N DIV+ +V MP +
Sbjct: 80 INVLLVESDDCTRRVVSALLRHCMYQVISAENGQQAWNYLEDKQNNIDIVLIEVFMPGVS 139
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + ++PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 140 GISLLSRIMSHNICKNIPVIMMSSNDARNTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 198
>gi|77548762|gb|ABA91559.1| CCT motif family protein, expressed [Oryza sativa Japonica Group]
Length = 699
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 11/162 (6%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +++ +LRKC Y V A ++R +D+V+++V MP +
Sbjct: 44 LRVLLVEHDDSTRQVVTALLRKCGYRVAAVADGMKAWGVMRERAYAFDLVLTEVTMPTLS 103
Query: 78 GFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
G +L ++ ++PVIMMS V++ + GA ++L+KP+R ELRN+WQHV
Sbjct: 104 GIELLSRIVASDECKNIPVIMMSSQDSIGTVLRCMQKGAVDFLVKPVRKNELRNLWQHVW 163
Query: 135 QQPKPFEESDDS--------YSVNQGNWRTSNRRKDEEEEAE 168
++ +++ S S N GN + DEE +A+
Sbjct: 164 RRHAMNSQTNASENNAASNHLSANGGNGSKTGEHSDEESDAQ 205
>gi|334715201|gb|AEG90656.1| pseudo-response regulator 37 splice variant b [Sorghum bicolor]
Length = 775
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ VL+V+ D R++ +LR C+Y+V + A + L +N DIV+ +V MP +
Sbjct: 80 INVLLVESDDCTRRVVSALLRHCMYQVISAENGQQAWNYLEDKQNNIDIVLIEVFMPGVS 139
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + ++PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 140 GISLLSRIMSHNICKNIPVIMMSSNDARNTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 198
>gi|255566892|ref|XP_002524429.1| conserved hypothetical protein [Ricinus communis]
gi|223536313|gb|EEF37964.1| conserved hypothetical protein [Ricinus communis]
Length = 667
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 16/139 (11%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V A +ML+ + D+++++V +P +
Sbjct: 44 LRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWEMLKGKPHNIDLILTEVELPSIS 103
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
G+ L HE + ++PVIMMS V K + GA +YL+KPIR ELRN+WQ
Sbjct: 104 GYALLTLIMEHE---ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPIRKNELRNLWQ 160
Query: 132 HV-------AQQPKPFEES 143
HV A++ P EES
Sbjct: 161 HVWRRQSSLARENCPQEES 179
>gi|384246881|gb|EIE20369.1| CheY-like protein, partial [Coccomyxa subellipsoidea C-169]
Length = 129
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 80/123 (65%), Gaps = 4/123 (3%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG-YDIVISDVHM 73
P + +L+VDD+ + ++ +LRKC Y+VT+ AL++LR G + ++++DV M
Sbjct: 2 PNDVHILLVDDERLSRVVVGNLLRKCSYKVTEAGSGMEALEILRGQPPGTFSLILTDVMM 61
Query: 74 PDMDGFKLHEQV-GLEM--DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
PD+DG +L V G E +LPVIMMS + T+ V + + GA +YLLKP+ KE++++W
Sbjct: 62 PDVDGIELLRHVRGDEAWSNLPVIMMSANERTETVFECIRGGAEDYLLKPVTKKEVQHMW 121
Query: 131 QHV 133
QHV
Sbjct: 122 QHV 124
>gi|302143985|emb|CBI23090.3| unnamed protein product [Vitis vinifera]
Length = 747
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V A ++L+ + D+++++V +P +
Sbjct: 40 LRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWEVLKARPHNIDLILTEVELPSIS 99
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
GF L HE + ++PVIMMS G V K + GA ++L+KP+R EL+N+WQ
Sbjct: 100 GFALLTLVMEHE---ICKNIPVIMMSSHGSINTVYKCMLRGAADFLVKPVRRNELKNLWQ 156
Query: 132 HV 133
HV
Sbjct: 157 HV 158
>gi|357121369|ref|XP_003562393.1| PREDICTED: two-component response regulator-like PRR37-like
[Brachypodium distachyon]
Length = 660
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 73/119 (61%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+V+ D +I+ +LR C+Y+V + A L+ ++ D+V+S+V MP +
Sbjct: 21 IRVLLVETDDSTRQIVTALLRHCMYQVIPAENGDQAWARLQDMQDNIDLVLSEVVMPGLS 80
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L E++ + D+PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 81 GISLLEKIMAHNVCKDIPVIMMSSNDAMGTVFKCLSTGAVDFLVKPIRKNELKNLWQHV 139
>gi|357157434|ref|XP_003577797.1| PREDICTED: two-component response regulator-like PRR95-like,
partial [Brachypodium distachyon]
Length = 681
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 11/162 (6%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +++ +LRKC Y V A +++R +D+V+++V MP +
Sbjct: 18 LRVLLVEHDDSTRQVVTALLRKCGYRVAAVADGMKAWEVMRGRAYAFDLVLTEVDMPTLS 77
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
G L ++ ++PVIMMS V++ + +GA ++L+KP+R ELRN+WQHV
Sbjct: 78 GIDLLARIVAAHECKNIPVIMMSSQDSIGTVLRCMQNGAVDFLVKPVRKNELRNLWQHVW 137
Query: 135 QQPKPFEESDDS--------YSVNQGNWRTSNRRKDEEEEAE 168
++ +++ S S N GN + DEE +A+
Sbjct: 138 RRHSMNTQTNASENNAASNHISANSGNRSKTGDNSDEESDAQ 179
>gi|359490833|ref|XP_003634174.1| PREDICTED: two-component response regulator-like APRR5-like [Vitis
vinifera]
Length = 688
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V A ++L+ + D+++++V +P +
Sbjct: 40 LRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWEVLKARPHNIDLILTEVELPSIS 99
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
GF L HE + ++PVIMMS G V K + GA ++L+KP+R EL+N+WQ
Sbjct: 100 GFALLTLVMEHE---ICKNIPVIMMSSHGSINTVYKCMLRGAADFLVKPVRRNELKNLWQ 156
Query: 132 HV 133
HV
Sbjct: 157 HV 158
>gi|357521359|ref|XP_003630968.1| Two-component response regulator ARR11 [Medicago truncatula]
gi|355524990|gb|AET05444.1| Two-component response regulator ARR11 [Medicago truncatula]
Length = 674
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 42/124 (33%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FPA ++VLV+D D L +EK L + Y+VT C A++++ K +D+V+ + M
Sbjct: 9 FPANVKVLVIDHDIHLLNAIEKKLSQFNYQVTTCWTVSSAMNLI-AQKVHFDLVLLETQM 67
Query: 74 PDMDGFKLHEQVGLEMDLPVIM-MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
PDMD F +Q+ ++D+PVIM M +G T ++ + +GAC+ +KP +++ +W H
Sbjct: 68 PDMDSFDFLQQLTQQIDIPVIMTMCSEGSTTGILNAIENGACDCWVKPFSENQVKYMWHH 127
Query: 133 VAQQ 136
++
Sbjct: 128 AVRK 131
>gi|158513660|sp|A2YQ93.2|PRR37_ORYSI RecName: Full=Two-component response regulator-like PRR37; AltName:
Full=Pseudo-response regulator 37; Short=OsPRR37
Length = 742
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
++VL+VD D +++ +LR C+YEV + A L +N D+V+++V MP +
Sbjct: 62 IKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVS 121
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + ++PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 122 GISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 180
>gi|222637749|gb|EEE67881.1| hypothetical protein OsJ_25707 [Oryza sativa Japonica Group]
Length = 661
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
++VL+VD D +++ +LR C+YEV + A L +N D+V+++V MP +
Sbjct: 61 IKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVS 120
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + ++PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 121 GISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 179
>gi|51571877|dbj|BAD38855.1| pseudo-response regulator 37 [Oryza sativa Japonica Group]
Length = 742
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
++VL+VD D +++ +LR C+YEV + A L +N D+V+++V MP +
Sbjct: 62 IKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVS 121
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + ++PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 122 GISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 180
>gi|357464211|ref|XP_003602387.1| Two-component response regulator-like PRR73 [Medicago truncatula]
gi|355491435|gb|AES72638.1| Two-component response regulator-like PRR73 [Medicago truncatula]
Length = 685
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V A ++L+ D+++++V +P +
Sbjct: 56 LRVLLVEADDCTRQIITALLRKCNYKVAAVADGLKAWEILKGRPRSIDLILTEVDLPAIS 115
Query: 78 GFKLHEQVGLEMDL----PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G+ L + +E D+ PVIMMS V K + GA +YL+KPIRI ELRN+WQHV
Sbjct: 116 GYALLTLI-MEHDICKSIPVIMMSSQDSVSTVYKCMLRGAADYLVKPIRINELRNLWQHV 174
>gi|115474289|ref|NP_001060743.1| Os07g0695100 [Oryza sativa Japonica Group]
gi|122166891|sp|Q0D3B6.1|PRR37_ORYSJ RecName: Full=Two-component response regulator-like PRR37; AltName:
Full=Pseudo-response regulator 37; Short=OsPRR37
gi|34394035|dbj|BAC84066.1| putative pseudo-response regulator [Oryza sativa Japonica Group]
gi|113612279|dbj|BAF22657.1| Os07g0695100 [Oryza sativa Japonica Group]
Length = 742
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
++VL+VD D +++ +LR C+YEV + A L +N D+V+++V MP +
Sbjct: 62 IKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVS 121
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + ++PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 122 GISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 180
>gi|51571883|dbj|BAD38858.1| pseudo-response regulator 37 [Oryza sativa Indica Group]
Length = 704
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
++VL+VD D +++ +LR C+YEV + A L +N D+V+++V MP +
Sbjct: 62 IKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVS 121
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + ++PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 122 GISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 180
>gi|281308386|gb|ADA58341.1| pseudo-response regulator 5a [Brassica rapa]
Length = 497
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 5/121 (4%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
LRVL+V+ D +I+ +LRKC Y V A +ML+ + D+++++V +P +
Sbjct: 54 ALRVLLVEADDSTRQIISALLRKCSYRVAAVPDGLKAWEMLKGNPESVDLILAEVDLPSI 113
Query: 77 DGFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
G+ L + +E D +PVIMMS V K + GA +YL+KP+R ELRN+WQH
Sbjct: 114 SGYALLTLI-MEHDVCKNIPVIMMSTHDSVNTVYKCMLKGAADYLVKPLRRNELRNLWQH 172
Query: 133 V 133
V
Sbjct: 173 V 173
>gi|18407171|ref|NP_566085.1| two-component response regulator-like APRR9 [Arabidopsis thaliana]
gi|52783231|sp|Q8L500.2|APRR9_ARATH RecName: Full=Two-component response regulator-like APRR9; AltName:
Full=Pseudo-response regulator 9
gi|9247022|gb|AAF86253.1|AF272040_1 timing of CAB expression 1-like protein [Arabidopsis thaliana]
gi|10281000|dbj|BAB13741.1| pseudo-response regulator 9 [Arabidopsis thaliana]
gi|20197322|gb|AAC33497.2| expressed protein [Arabidopsis thaliana]
gi|62320652|dbj|BAD95319.1| hypothetical protein [Arabidopsis thaliana]
gi|330255660|gb|AEC10754.1| two-component response regulator-like APRR9 [Arabidopsis thaliana]
Length = 468
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 73/122 (59%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V + A ++L+ + D++++++ +P +
Sbjct: 37 LRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILTELDLPSIS 96
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
GF L HE ++PVIMMS + V+K + GA +YL+KP+R EL+N+WQ
Sbjct: 97 GFALLALVMEHEAC---KNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQ 153
Query: 132 HV 133
HV
Sbjct: 154 HV 155
>gi|84570633|dbj|BAE72701.1| pseudo-response regulator 59 homologue [Lemna gibba]
Length = 496
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D I+ +LRKC Y V A D+++ +DI++S+V +P
Sbjct: 57 LRVLLVEPDDSTRHIVTALLRKCSYHVASVADGIKAWDIVKEKNFNFDIILSEVEVPSFS 116
Query: 78 GFKLHEQV-GLEMD--LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ G E+ +PVIMMS V K + GA ++L+KP+R ELRN+WQHV
Sbjct: 117 GISLLTKIMGTELSRSIPVIMMSSQDSVSVVFKCMQKGAVDFLVKPVRKNELRNLWQHV 175
>gi|157399682|gb|ABV53465.1| pseudo-response regulator 9 [Castanea sativa]
Length = 700
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 73/121 (60%), Gaps = 5/121 (4%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
LR+L+V+ D +I+ +LRKC Y+V + A + L+ + D+V+++V +P +
Sbjct: 38 ALRILLVEADDSTRQIIAALLRKCSYKVAAVSDGLKAWETLKGRPHNIDLVLTEVELPSI 97
Query: 77 DGFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
GF L + +E D +PVIMMS + V+K + GA ++L+KP+R ELRN+WQH
Sbjct: 98 SGFALLTLI-MEHDVCKNIPVIMMSSNDAITTVLKCMLKGAADFLIKPVRKNELRNLWQH 156
Query: 133 V 133
V
Sbjct: 157 V 157
>gi|255541448|ref|XP_002511788.1| sensor histidine kinase, putative [Ricinus communis]
gi|223548968|gb|EEF50457.1| sensor histidine kinase, putative [Ricinus communis]
Length = 437
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 76/125 (60%)
Query: 7 SVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDI 66
SV ++ + AG+ +LVVD D L I+ KML Y+V RA AL +LR + D+
Sbjct: 8 SVDINAEGAAGVSILVVDCDSACLAIVSKMLYISGYKVITAKRATDALHILRERQYELDL 67
Query: 67 VISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++++VH+PDMD ++L E + LP++++S D ++ + GA YLLKPI + ++
Sbjct: 68 ILTEVHLPDMDKYELLETMAEVSCLPIVILSADDDENAMLGCLFKGAVFYLLKPITMNDV 127
Query: 127 RNIWQ 131
+++WQ
Sbjct: 128 KSLWQ 132
>gi|108707546|gb|ABF95341.1| Two-component response regulator-like PRR73, putative, expressed
[Oryza sativa Japonica Group]
Length = 745
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V++D +++ +LRKC YEV A L +N D+V+++V MP +
Sbjct: 81 LRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLS 140
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ D+PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 141 GIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 199
>gi|158513189|sp|A2XFB7.2|PRR73_ORYSI RecName: Full=Two-component response regulator-like PRR73; AltName:
Full=Pseudo-response regulator 73; Short=OsPRR73
Length = 767
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V++D +++ +LRKC YEV A L +N D+V+++V MP +
Sbjct: 81 LRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLS 140
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ D+PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 141 GIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 199
>gi|115452319|ref|NP_001049760.1| Os03g0284100 [Oryza sativa Japonica Group]
gi|122247198|sp|Q10N34.1|PRR73_ORYSJ RecName: Full=Two-component response regulator-like PRR73; AltName:
Full=Pseudo-response regulator 73; Short=OsPRR73
gi|51571879|dbj|BAD38856.1| pseudo-response regulator 73 [Oryza sativa Japonica Group]
gi|108707543|gb|ABF95338.1| Two-component response regulator-like PRR73, putative, expressed
[Oryza sativa Japonica Group]
gi|113548231|dbj|BAF11674.1| Os03g0284100 [Oryza sativa Japonica Group]
gi|222624693|gb|EEE58825.1| hypothetical protein OsJ_10396 [Oryza sativa Japonica Group]
Length = 767
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V++D +++ +LRKC YEV A L +N D+V+++V MP +
Sbjct: 81 LRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLS 140
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ D+PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 141 GIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 199
>gi|334715189|gb|AEG90650.1| pseudo-response regulator 37 splice variant a [Sorghum bicolor]
Length = 761
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ VL+V+ D R++ +LR C+Y+V + A + L +N DIV+ +V MP +
Sbjct: 80 INVLLVESDDCTRRVVSALLRHCMYQVISAENGQQAWNYLEDKQNNIDIVLIEVFMPGVS 139
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + ++PVIMMS + V K ++ GA ++L+ PIR EL+N+WQHV
Sbjct: 140 GISLLSRIMSHNICKNIPVIMMSSNDARNTVFKCLSKGAVDFLVNPIRKNELKNLWQHV 198
>gi|51571885|dbj|BAD38859.1| pseudo-response regulator 73 [Oryza sativa Indica Group]
Length = 767
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V++D +++ +LRKC YEV A L +N D+V+++V MP +
Sbjct: 81 LRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLS 140
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ D+PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 141 GIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 199
>gi|52783225|sp|Q6LA42.2|APRR5_ARATH RecName: Full=Two-component response regulator-like APRR5; AltName:
Full=Pseudo-response regulator 5
gi|9758535|dbj|BAB08930.1| unnamed protein product [Arabidopsis thaliana]
gi|17063183|gb|AAL32986.1| pseudo-response regulator 5 protein [Arabidopsis thaliana]
gi|23506027|gb|AAN28873.1| At5g24470/T31K7_5 [Arabidopsis thaliana]
Length = 558
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 12/158 (7%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
LRVL+V+ D +I+ +LRKC Y V A +ML+ D+++++V +P +
Sbjct: 49 ALRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEMLKGKPESVDLILTEVDLPSI 108
Query: 77 DGFKLHEQVGLEMDL----PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
G+ L + +E D+ PVIMMS V K + GA +YL+KP+R ELRN+WQH
Sbjct: 109 SGYALLTLI-MEHDICKNIPVIMMSTQDSVNTVYKCMLKGAADYLVKPLRRNELRNLWQH 167
Query: 133 V-------AQQPKPFEESDDSYSVNQGNWRTSNRRKDE 163
V A P+ ES + SN ++D+
Sbjct: 168 VWRRQTSLAPDSFPWNESVGQQKAEGASANNSNGKRDD 205
>gi|18420797|ref|NP_568446.1| two-component response regulator-like APRR5 [Arabidopsis thaliana]
gi|10281006|dbj|BAB13743.1| pseudo-response regulator 5 [Arabidopsis thaliana]
gi|332005931|gb|AED93314.1| two-component response regulator-like APRR5 [Arabidopsis thaliana]
Length = 667
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 12/158 (7%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
LRVL+V+ D +I+ +LRKC Y V A +ML+ D+++++V +P +
Sbjct: 158 ALRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEMLKGKPESVDLILTEVDLPSI 217
Query: 77 DGFKLHEQVGLEMDL----PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
G+ L + +E D+ PVIMMS V K + GA +YL+KP+R ELRN+WQH
Sbjct: 218 SGYALLTLI-MEHDICKNIPVIMMSTQDSVNTVYKCMLKGAADYLVKPLRRNELRNLWQH 276
Query: 133 V-------AQQPKPFEESDDSYSVNQGNWRTSNRRKDE 163
V A P+ ES + SN ++D+
Sbjct: 277 VWRRQTSLAPDSFPWNESVGQQKAEGASANNSNGKRDD 314
>gi|334715191|gb|AEG90651.1| pseudo-response regulator 37 splice variant b [Sorghum bicolor]
Length = 775
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ VL+V+ D R++ +LR C+Y+V + A + L +N DIV+ +V MP +
Sbjct: 80 INVLLVESDDCTRRVVSALLRHCMYQVISAENGQQAWNYLEDKQNNIDIVLIEVFMPGVS 139
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + ++PVIMMS + V K ++ GA ++L+ PIR EL+N+WQHV
Sbjct: 140 GISLLSRIMSHNICKNIPVIMMSSNDARNTVFKCLSKGAVDFLVNPIRKNELKNLWQHV 198
>gi|168065344|ref|XP_001784613.1| circadian clock protein PRR1 [Physcomitrella patens subsp. patens]
gi|162663845|gb|EDQ50588.1| circadian clock protein PRR1 [Physcomitrella patens subsp. patens]
Length = 425
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 12/139 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LR+L+V+ D ++ +LR C YEVT IA +L + + +D+V++DV MP +
Sbjct: 12 LRILLVEYDDATRHVVGALLRNCDYEVTAVANGSIAWGLLEDANSNFDLVLTDVVMPRLS 71
Query: 78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++ + +P+++MS V + ++ GAC+YL+KP+R ELRN+WQHV
Sbjct: 72 GVGLLSKM-MKREACRRVPIVIMSSYDSLDIVFRCLSKGACDYLVKPVRKNELRNLWQHV 130
Query: 134 -------AQQPKPFEESDD 145
QQP + DD
Sbjct: 131 WRKCHSLDQQPDVGRQQDD 149
>gi|24796813|gb|AAN64489.1| putative pseudo-response regulator [Oryza sativa Japonica Group]
Length = 789
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V++D +++ +LRKC YEV A L +N D+V+++V MP +
Sbjct: 81 LRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLS 140
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ D+PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 141 GIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 199
>gi|334715193|gb|AEG90652.1| pseudo-response regulator 37 splice variant c [Sorghum bicolor]
Length = 759
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ VL+V+ D R++ +LR C+Y+V + A + L +N DIV+ +V MP +
Sbjct: 80 INVLLVESDDCTRRVVSALLRHCMYQVISAENGQQAWNYLEDKQNNIDIVLIEVFMPGVS 139
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + ++PVIMMS + V K ++ GA ++L+ PIR EL+N+WQHV
Sbjct: 140 GISLLSRIMSHNICKNIPVIMMSSNDARNTVFKCLSKGAVDFLVNPIRKNELKNLWQHV 198
>gi|449497396|ref|XP_004160390.1| PREDICTED: two-component response regulator-like PRR95-like
[Cucumis sativus]
Length = 696
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y V A ++L+ D+++++V +P +
Sbjct: 61 LRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNVDLILAEVELPSIS 120
Query: 78 GFKLHEQV-GLEM--DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GF L + G E ++PVIMMS + V K + GA +YL+KP+R ELRN+WQHV
Sbjct: 121 GFALLTLIMGHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHV 179
>gi|449456441|ref|XP_004145958.1| PREDICTED: two-component response regulator-like PRR95-like
[Cucumis sativus]
Length = 696
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y V A ++L+ D+++++V +P +
Sbjct: 61 LRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNVDLILAEVELPSIS 120
Query: 78 GFKLHEQV-GLEM--DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GF L + G E ++PVIMMS + V K + GA +YL+KP+R ELRN+WQHV
Sbjct: 121 GFALLTLIMGHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHV 179
>gi|224121124|ref|XP_002318502.1| pseudo response regulator [Populus trichocarpa]
gi|222859175|gb|EEE96722.1| pseudo response regulator [Populus trichocarpa]
Length = 529
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y V A ++L+ +G D+++++V +P +
Sbjct: 65 LRVLLVEADDSTRQIIAALLRKCSYRVVSVPDGLKAWEILKGRPHGIDLILTEVDLPSIS 124
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
G+ L HE + ++PVIMMS V K + GA +YL+KP+R ELRN+WQ
Sbjct: 125 GYPLLTIIMEHE---ICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPLRKNELRNLWQ 181
Query: 132 HV 133
HV
Sbjct: 182 HV 183
>gi|357112782|ref|XP_003558186.1| PREDICTED: two-component response regulator-like PRR73-like
[Brachypodium distachyon]
Length = 766
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V++D +++ +LRKC YEV A L +N D+V+++V MP +
Sbjct: 82 LRVLLVENDDCTRQVVGALLRKCGYEVISAENGLHAWQYLEDLQNRIDLVLTEVAMPCLS 141
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + D+PVIMMS + V K ++ GA ++L+KPIR EL+N+WQH+
Sbjct: 142 GISLLSKIMSHKICKDIPVIMMSKNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHI 200
>gi|108707544|gb|ABF95339.1| Two-component response regulator-like PRR73, putative, expressed
[Oryza sativa Japonica Group]
Length = 533
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V++D +++ +LRKC YEV A L +N D+V+++V MP +
Sbjct: 81 LRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLS 140
Query: 78 GFKLHEQVG---LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + D+PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 141 GIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 199
>gi|226505594|ref|NP_001146641.1| uncharacterized protein LOC100280240 [Zea mays]
gi|219888151|gb|ACL54450.1| unknown [Zea mays]
gi|323388721|gb|ADX60165.1| PseuodARR-B transcription factor [Zea mays]
gi|413956104|gb|AFW88753.1| two-component response regulator-like PRR73 [Zea mays]
Length = 766
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V++D +++ +LRKC YEV A L +N D+V+++V MP +
Sbjct: 83 LRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWRYLEDLQNNIDLVLTEVFMPCLS 142
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ D+PVIMMS + V K ++ GA ++L+KP+R EL+N+WQHV
Sbjct: 143 GIGLLSKITSHKICKDIPVIMMSTNDSMSMVFKCLSKGAVDFLVKPLRKNELKNLWQHV 201
>gi|297824763|ref|XP_002880264.1| pseudo-response regulator 9 [Arabidopsis lyrata subsp. lyrata]
gi|297326103|gb|EFH56523.1| pseudo-response regulator 9 [Arabidopsis lyrata subsp. lyrata]
Length = 476
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 73/122 (59%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V + A ++L+ + D++++++ +P +
Sbjct: 37 LRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILTELDLPSIS 96
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
GF L HE ++PVIMMS + V+K + GA +YL+KP+R EL+N+WQ
Sbjct: 97 GFALLALVMEHEAC---KNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQ 153
Query: 132 HV 133
HV
Sbjct: 154 HV 155
>gi|413956105|gb|AFW88754.1| hypothetical protein ZEAMMB73_978741 [Zea mays]
Length = 743
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V++D +++ +LRKC YEV A L +N D+V+++V MP +
Sbjct: 83 LRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWRYLEDLQNNIDLVLTEVFMPCLS 142
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ D+PVIMMS + V K ++ GA ++L+KP+R EL+N+WQHV
Sbjct: 143 GIGLLSKITSHKICKDIPVIMMSTNDSMSMVFKCLSKGAVDFLVKPLRKNELKNLWQHV 201
>gi|325910798|dbj|BAJ83829.1| circadian response regulator 2b [Physcomitrella patens subsp.
patens]
Length = 917
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 74/120 (61%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V+DD ++ +LR C YEVT +A +L + + +D+V++DV MP +
Sbjct: 186 LKVLLVEDDDATRHVVGALLRNCNYEVTPVANGSLAWGLLEEANSNFDLVLTDVVMPYLS 245
Query: 78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++ + +P+++MS V + ++ GAC+YL+KP+R EL+N+WQHV
Sbjct: 246 GVGLLSKM-MKREACKRVPIVIMSSYDSLGIVFRCLSKGACDYLVKPVRKNELKNLWQHV 304
>gi|84570627|dbj|BAE72698.1| pseudo-response regulator 59 homologue [Lemna paucicostata]
Length = 501
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D I+ +LRKC Y V A D++ +DI++S+V +P
Sbjct: 73 LRVLLVEPDDCTRHIVTALLRKCSYHVAAVADGIKAWDIVEEKNFNFDIILSEVEVPSFS 132
Query: 78 GFKLHEQV-GLEMD--LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ G E+ +PVIMMS V K + GA ++L+KP+R ELRN+WQHV
Sbjct: 133 GINLLSKIMGTELSRSIPVIMMSSQDSVSVVFKCMQKGAVDFLVKPVRKNELRNLWQHV 191
>gi|108707545|gb|ABF95340.1| Two-component response regulator-like PRR73, putative, expressed
[Oryza sativa Japonica Group]
Length = 473
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V++D +++ +LRKC YEV A L +N D+V+++V MP +
Sbjct: 81 LRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLS 140
Query: 78 GFKLHEQVG---LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + D+PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 141 GIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 199
>gi|242067499|ref|XP_002449026.1| hypothetical protein SORBIDRAFT_05g003660 [Sorghum bicolor]
gi|241934869|gb|EES08014.1| hypothetical protein SORBIDRAFT_05g003660 [Sorghum bicolor]
Length = 697
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +++ +LRKC Y V A +++R +D+V+++V MP +
Sbjct: 55 LRVLLVEHDDSTRQVVTALLRKCGYRVAAVADGMKAWEVMRGRAYAFDLVLTEVAMPSLS 114
Query: 78 GFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV- 133
G +L ++ ++PVIMMS V+K + GA ++L+KP+R ELRN+WQHV
Sbjct: 115 GIQLLSRIVAADECKNIPVIMMSSQDSIGTVLKCMQKGAVDFLVKPVRKNELRNLWQHVW 174
Query: 134 -------AQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAE 168
+ + S N N + DEE +A+
Sbjct: 175 RRHAMNCQTNGSENNAASNHISANVANGSKTGENSDEESDAQ 216
>gi|84570629|dbj|BAE72699.1| pseudo-response regulator 95 homologue [Lemna paucicostata]
Length = 448
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 74/120 (61%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+V+ D +I+ +LRKC Y+V+ + A L+ S N D+V+++V +P++
Sbjct: 31 VRVLLVEADDSTRKIVAALLRKCSYKVSSASDGLEAWKTLKESPNNIDLVLTEVELPNVS 90
Query: 78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G+ L + +E D +PVIMMS + V + + GA ++L+KPIR ELRN+WQHV
Sbjct: 91 GYALLSMM-MEHDSCKSIPVIMMSSRDSMKMVFECMLKGAADFLVKPIRKNELRNLWQHV 149
>gi|218196749|gb|EEC79176.1| hypothetical protein OsI_19863 [Oryza sativa Indica Group]
Length = 385
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 44 VTKCNRAEIALDMLRMSKNGYDIVISDVHMP-DMDGFKLHEQVGLEMDLPVIMMSVDGCT 102
VT A A++ L + YD+V+++VH P +DGF L + G +MDLPV++ S D
Sbjct: 6 VTPKTAARDAVEELHENPWSYDMVLTEVHAPAGIDGFNLLQYAGTDMDLPVVVFSADDDK 65
Query: 103 QDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
+ V+K V GAC+YL+KP+R +EL+NIWQHV
Sbjct: 66 RTVLKCVNSGACDYLVKPLRHEELKNIWQHV 96
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 105 VMKGVTHGACNYLLKPIRIKELRNIWQHV 133
VM+ V +GAC+Y++KP+ + ++ IW+HV
Sbjct: 155 VMRTVMNGACDYMVKPMTSEAIKFIWKHV 183
>gi|325910792|dbj|BAJ83826.1| circadian response regulator 1a [Physcomitrella patens subsp.
patens]
Length = 907
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 73/120 (60%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LR+L+V+ D ++ +LR C YEVT IA +L + + +D+V++DV MP +
Sbjct: 183 LRILLVEYDDATRHVVGALLRNCDYEVTAVANGSIAWGLLEDANSNFDLVLTDVVMPRLS 242
Query: 78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++ + +P+++MS V + ++ GAC+YL+KP+R ELRN+WQHV
Sbjct: 243 GVGLLSKM-MKREACRRVPIVIMSSYDSLDIVFRCLSKGACDYLVKPVRKNELRNLWQHV 301
>gi|334715197|gb|AEG90654.1| pseudo-response regulator 37 splice variant a [Sorghum bicolor]
Length = 291
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ VL+V+ D R++ +LR C+Y+V + A + L +N DIV+ +V MP +
Sbjct: 80 INVLLVESDDCTRRVVSALLRHCMYQVISAENGQQAWNYLEDKQNNIDIVLIEVFMPGVS 139
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + ++PVIMMS + V K ++ GA ++L+ PIR EL+N+WQHV
Sbjct: 140 GISLLSRIMSHNICKNIPVIMMSSNDARNTVFKCLSKGAVDFLVNPIRKNELKNLWQHV 198
>gi|50400667|sp|Q9LZJ8.1|ARR20_ARATH RecName: Full=Putative two-component response regulator ARR20
gi|7362747|emb|CAB83117.1| putative protein [Arabidopsis thaliana]
Length = 426
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 16/175 (9%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVL+V D L+ ++ + Y+VTK E A+ L +K+ D+VI D HMPD++G
Sbjct: 42 RVLLVGADSN--SSLKNLMTQYSYQVTKYESGEEAMAFLMKNKHEIDLVIWDFHMPDING 99
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ-- 136
+G +MDLPV++MS + + VM+ + +GAC++L+KP+ + + +W+HV ++
Sbjct: 100 LDALNIIGKQMDLPVVIMSHEYKKETVMESIKYGACDFLVKPVSKEVIAVLWRHVYRKRM 159
Query: 137 -----PKPFE----ESD-DSY-SVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKPR 180
KP E ESD D Y + Q N SN + + + +++ S KKPR
Sbjct: 160 SKSGLDKPGESGTVESDPDEYDDLEQDNLYESN-EEGSKNTCDHKEEKSPTKKPR 213
>gi|258678906|dbj|BAI39993.1| pseudo-response regulator homolog protein [Physcomitrella patens
subsp. patens]
Length = 907
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 73/120 (60%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LR+L+V+ D ++ +LR C YEVT IA +L + + +D+V++DV MP +
Sbjct: 183 LRILLVEYDDATRHVVGALLRNCDYEVTAVANGSIAWGLLEDANSNFDLVLTDVVMPRLS 242
Query: 78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++ + +P+++MS V + ++ GAC+YL+KP+R ELRN+WQHV
Sbjct: 243 GVGLLSKM-MKREACRRVPIVIMSSYDSLDIVFRCLSKGACDYLVKPVRKNELRNLWQHV 301
>gi|84570631|dbj|BAE72700.1| pseudo-response regulator 37 homologue [Lemna gibba]
Length = 623
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D ++ +LR C YEVT A L N DIV+++V MP +
Sbjct: 77 LKVLLVENDDSTRHVVNALLRNCSYEVTAVANGLEAWKFLENLSNNVDIVLTEVVMPSLT 136
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L +++ M L PVIMMS V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 137 GIGLLDKIMSHMTLKTIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRKNELKNLWQHV 195
>gi|224131058|ref|XP_002320991.1| response regulator [Populus trichocarpa]
gi|222861764|gb|EEE99306.1| response regulator [Populus trichocarpa]
Length = 144
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 21/144 (14%)
Query: 56 MLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACN 115
MLR KN +D++ +D+ M +MDG +L + + EMDLPV+++S D + V+KGV GAC+
Sbjct: 1 MLREDKNRFDVLGNDLQMHEMDGIQLLKIIRSEMDLPVVIISSDDEQELVLKGVLQGACD 60
Query: 116 YLLKPIRIKELRNIWQHVAQQP---------KPFEESDD------------SYSVNQGNW 154
L+KP++++ L+ WQHV ++ +P + +D + S N G+
Sbjct: 61 CLIKPVKMEALKVFWQHVVRKKINNTLERLEQPIRKEEDKLHLENSCIVSCTVSGNAGHP 120
Query: 155 RTSNRRKDEEEEAEKRDDTSTLKK 178
T R+ D E+E + D ST KK
Sbjct: 121 MTLKRKIDGEDEGKASDGLSTGKK 144
>gi|218200317|gb|EEC82744.1| hypothetical protein OsI_27455 [Oryza sativa Indica Group]
Length = 507
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
++VL+V+ D +++ +LR C+YEV + A L +N D+V+++V MP +
Sbjct: 61 IKVLLVESDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVS 120
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + ++PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 121 GISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 179
>gi|356539090|ref|XP_003538033.1| PREDICTED: LOW QUALITY PROTEIN: two-component response
regulator-like APRR3-like [Glycine max]
Length = 792
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 22/147 (14%)
Query: 6 SSVAVSDQFPAG-------------LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEI 52
S+ +S Q P G ++VL+V+DD ++ +LR C YEVT +
Sbjct: 65 GSLQISQQPPQGPVVCWERFLPVRSIKVLLVEDDDSTRHVVRALLRNCSYEVTAVSNGLQ 124
Query: 53 ALDMLRMSKNGYDIVISDVHMPDMDGFKL------HEQVGLEMDLPVIMMSVDGCTQDVM 106
A +L +NG D+V+++V MP + G L H+ + ++PVIMMS V
Sbjct: 125 AWKVLEDPENGIDLVLTEVAMPILSGIGLLCKIMSHKTL---KNIPVIMMSSHDSMGIVF 181
Query: 107 KGVTHGACNYLLKPIRIKELRNIWQHV 133
K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 182 KCLSKGAVDFLVKPIRRNELKNLWQHV 208
>gi|356518667|ref|XP_003528000.1| PREDICTED: two-component response regulator-like PRR95-like
[Glycine max]
Length = 700
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V A ++L+ + D+++++V +P +
Sbjct: 50 LRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWELLKGRPHNVDLILTEVDLPSVS 109
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
G+ L HE + ++PVIMMS V K + GA +YL+KPIR ELRN+WQ
Sbjct: 110 GYALLTLIMEHE---ICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQ 166
Query: 132 HV 133
HV
Sbjct: 167 HV 168
>gi|302854384|ref|XP_002958700.1| hypothetical protein VOLCADRAFT_69846 [Volvox carteri f.
nagariensis]
gi|300255940|gb|EFJ40220.1| hypothetical protein VOLCADRAFT_69846 [Volvox carteri f.
nagariensis]
Length = 124
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 74/122 (60%), Gaps = 6/122 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML---RMSKNGYDIVISDVHMP 74
VL+V+DD + L+ +E++LRKC Y+VT A+ +L R S D++++D+ MP
Sbjct: 3 FHVLLVEDDRVTLKTVEQLLRKCNYKVTCAANGREAIKVLTACRHSGVKVDLILTDILMP 62
Query: 75 DMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
++ GF L +V D+PV++MS ++V++ GA +YL+KPIR EL +WQ
Sbjct: 63 EVTGFDLINEVVHGDTFCDVPVVVMSSQDSQENVLQAFQAGAADYLIKPIRKNELATLWQ 122
Query: 132 HV 133
HV
Sbjct: 123 HV 124
>gi|312283015|dbj|BAJ34373.1| unnamed protein product [Thellungiella halophila]
Length = 486
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V + A + L+ + D++++++ +P +
Sbjct: 41 LRVLLVESDDSTRQIITALLRKCYYKVVAVSDGLAAWETLKEKSHSIDLILTELDLPSIS 100
Query: 78 GFKLHEQVGLEM------DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
GF L + L M ++PVIMMS V+K + GA +YL+KP+R EL+N+WQ
Sbjct: 101 GFAL---LALVMENEACKNIPVIMMSSQDSITLVLKCMLRGAADYLIKPMRKNELKNLWQ 157
Query: 132 HV 133
HV
Sbjct: 158 HV 159
>gi|356509155|ref|XP_003523317.1| PREDICTED: two-component response regulator-like APRR9-like
[Glycine max]
Length = 655
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V A ++L+ + D+++++V +P +
Sbjct: 49 LRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWELLKGRPHNVDLILTEVDLPSIS 108
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
G+ L HE + ++PVIMMS V K + GA +YL+KPIR ELRN+WQ
Sbjct: 109 GYALLTLIMEHE---ICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQ 165
Query: 132 HV 133
HV
Sbjct: 166 HV 167
>gi|145351734|ref|XP_001420222.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580455|gb|ABO98515.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 145
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 73/119 (61%), Gaps = 4/119 (3%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ VLVVDD+ I + +LRKC Y VT E AL++LR + ++++DV MP +D
Sbjct: 23 VHVLVVDDERICRTVTSSLLRKCGYRVTTAESGEEALELLRRGTE-FHLLLTDVMMPGID 81
Query: 78 GFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L + V + D+PVIMMS + + V + + +GA +YLLKP+ K ++++WQHV
Sbjct: 82 GPALLQIVRNDERLRDMPVIMMSANEHSDTVFRCIQYGAEDYLLKPVSRKAVKHMWQHV 140
>gi|225453624|ref|XP_002266192.1| PREDICTED: two-component response regulator-like APRR5-like [Vitis
vinifera]
Length = 641
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V + A + L+ D+++++V +P +
Sbjct: 51 LRVLLVEPDDSTRQIIAALLRKCSYKVAAVSDGLKAWEALKGEPQNVDLILTEVELPSIS 110
Query: 78 GFKLHEQVGLEMDL----PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GF L + +E D+ PVIMMS V+K + GA ++L+KP+R ELRN+WQHV
Sbjct: 111 GFALLSLI-MEDDICKKIPVIMMSSHDSISMVLKCMLKGAADFLVKPVRKNELRNLWQHV 169
Query: 134 AQQPKP 139
++ P
Sbjct: 170 WRRHAP 175
>gi|84570635|dbj|BAE72702.1| pseudo-response regulator 95 homologue [Lemna gibba]
Length = 460
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V+ + A L+ N D+V+++V +P++
Sbjct: 31 LRVLLVEADDSTRKIVAALLRKCGYKVSSASDGLEAWKTLKEKPNDTDLVLTEVELPNVS 90
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
G+ L HE +PVIMMS + + V + + GA ++L+KPIR ELRN+WQ
Sbjct: 91 GYALLSMMMEHETC---KSIPVIMMSSNDSMKMVFECMLKGAADFLVKPIRKNELRNLWQ 147
Query: 132 HV 133
HV
Sbjct: 148 HV 149
>gi|406889094|gb|EKD35381.1| sigma-54 dependent DNA-binding response regulator (NtrC-type
regulator), partial [uncultured bacterium]
Length = 140
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 7/125 (5%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
VL+VDDDP L +LE L+ Y V + + AL++L+ K+ DI++SD+ MP+M G
Sbjct: 7 VLIVDDDPSILEVLEARLQAAGYLVRRASSGPAALELLK--KHPIDILVSDMKMPEMSGI 64
Query: 80 KL-HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI----RIKELRNIWQHVA 134
+L E G++ LPVI ++ G D + V GA +YL KP +K++R I V
Sbjct: 65 ELLAETYGIQPHLPVIFLTAYGTIPDAVDAVKAGAVDYLTKPFDGKELVKKIRTILSSVP 124
Query: 135 QQPKP 139
+ P P
Sbjct: 125 ESPAP 129
>gi|296089013|emb|CBI38716.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V + A + L+ D+++++V +P +
Sbjct: 3 LRVLLVEPDDSTRQIIAALLRKCSYKVAAVSDGLKAWEALKGEPQNVDLILTEVELPSIS 62
Query: 78 GFKLHEQVGLEMDL----PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GF L + +E D+ PVIMMS V+K + GA ++L+KP+R ELRN+WQHV
Sbjct: 63 GFALLSLI-MEDDICKKIPVIMMSSHDSISMVLKCMLKGAADFLVKPVRKNELRNLWQHV 121
Query: 134 AQQPKP 139
++ P
Sbjct: 122 WRRHAP 127
>gi|308913674|gb|ADO51647.1| PRR59 [Zea mays]
Length = 695
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 11/162 (6%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y V A +++R +D+V+++V MP +
Sbjct: 53 LRVLLVEHDDSTRQIVTALLRKCGYRVAAVADGMKAWEVMRERAYDFDLVLTEVAMPSLS 112
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV- 133
G +L ++ ++PVIMMS V+K + GA ++L+KP+R EL N+WQHV
Sbjct: 113 GIQLLSRIAAAAECKNIPVIMMSSQDSIGTVLKCMQKGAVDFLVKPVRKNELGNLWQHVW 172
Query: 134 -------AQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAE 168
+ + S N N + DEE +A+
Sbjct: 173 RRHAMNCQTNGSENNAASNHVSTNVANGSKTGENNDEESDAQ 214
>gi|308808948|ref|XP_003081784.1| WD40 repeat-containing protein (ISS) [Ostreococcus tauri]
gi|116060250|emb|CAL56309.1| WD40 repeat-containing protein (ISS) [Ostreococcus tauri]
Length = 878
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 79/134 (58%), Gaps = 4/134 (2%)
Query: 3 PASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN 62
P++SS+ + + VLVVDD+ I + +LR+C Y VT E AL++LR
Sbjct: 15 PSTSSLNDGPVTTSDVHVLVVDDERICRTVTSSLLRRCGYRVTMAESGEEALELLRRGTE 74
Query: 63 GYDIVISDVHMPDMDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119
+ ++++DV MP +DG L + V + D+PV+MMS + + V + + HGA +YLLK
Sbjct: 75 -FHMLLTDVMMPGIDGPALLQIVRNDERLRDMPVVMMSANEHSDTVFRCIQHGAEDYLLK 133
Query: 120 PIRIKELRNIWQHV 133
P+ + ++++W HV
Sbjct: 134 PVSRRAVKHMWTHV 147
>gi|255080498|ref|XP_002503829.1| response regulator receiver/WD40 domain fusion protein [Micromonas
sp. RCC299]
gi|226519096|gb|ACO65087.1| response regulator receiver/WD40 domain fusion protein [Micromonas
sp. RCC299]
Length = 1414
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 73/122 (59%), Gaps = 4/122 (3%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
PA + VL+VDDD + ++ ML+KC Y+VT + E A+ +L ++++++DV MP
Sbjct: 6 PADVHVLLVDDDRVCRTLVAGMLKKCNYQVTTASSGEEAMALLERGTQ-FNLLLTDVMMP 64
Query: 75 DMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
D+DG L V ++PV+MMS + VM + GA +YLLKP+ K ++++W
Sbjct: 65 DVDGPTLLHYVRNNPFYQEMPVVMMSSNEHADTVMNCIRLGAEDYLLKPVTKKAVKHMWA 124
Query: 132 HV 133
HV
Sbjct: 125 HV 126
>gi|449503419|ref|XP_004161993.1| PREDICTED: uncharacterized protein LOC101230585 [Cucumis sativus]
Length = 557
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 11/133 (8%)
Query: 10 VSDQFPA---GLRVLVVDDDPIWLRILEKMLRKCLY-----EVTKCNRAEIALDMLRMSK 61
V+D P+ L VL+VD DP L+ L +L + Y +T A IAL M++
Sbjct: 8 VTDSLPSFAKNLHVLLVDHDPFSLKHLASLLEQQSYNGTVDHITTTQLASIALSMIQEKG 67
Query: 62 NGYDIVISDVHMPDMDGFK-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
+ +D+V+++V MPDMD F LH V L+M++ VI MS K + GAC +L KP
Sbjct: 68 DRFDLVMANVSMPDMDSFSFLH--VLLKMNIAVIFMSSGMNLSVATKALAEGACYFLQKP 125
Query: 121 IRIKELRNIWQHV 133
I +L+ +WQHV
Sbjct: 126 ISRGDLKYMWQHV 138
>gi|449458817|ref|XP_004147143.1| PREDICTED: uncharacterized protein LOC101203501 [Cucumis sativus]
Length = 607
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 11/133 (8%)
Query: 10 VSDQFPA---GLRVLVVDDDPIWLRILEKMLRKCLY-----EVTKCNRAEIALDMLRMSK 61
V+D P+ L VL+VD DP L+ L +L + Y +T A IAL M++
Sbjct: 8 VTDSLPSFAKNLHVLLVDHDPFSLKHLASLLEQQSYNGTVDHITTTQLASIALSMIQEKG 67
Query: 62 NGYDIVISDVHMPDMDGFK-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
+ +D+V+++V MPDMD F LH V L+M++ VI MS K + GAC +L KP
Sbjct: 68 DRFDLVMANVSMPDMDSFSFLH--VLLKMNIAVIFMSSGMNLSVATKALAEGACYFLQKP 125
Query: 121 IRIKELRNIWQHV 133
I +L+ +WQHV
Sbjct: 126 ISRGDLKYMWQHV 138
>gi|84570625|dbj|BAE72697.1| pseudo-response regulator 37 homologue [Lemna paucicostata]
Length = 617
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D ++ +LR C YEVT A +L N DIV+++V MP +
Sbjct: 77 LKVLLVENDDSTRHVVNALLRNCSYEVTAVANGLEAWKVLENLSNNVDIVLTEVVMPSLS 136
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L +++ + L PVIMMS V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 137 GIGLLDKIMSHITLKTIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRKNELKNLWQHV 195
>gi|255548045|ref|XP_002515079.1| sensory transduction histidine kinase, putative [Ricinus communis]
gi|223545559|gb|EEF47063.1| sensory transduction histidine kinase, putative [Ricinus communis]
Length = 697
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y V +A + L+ N D+++++V +P +
Sbjct: 41 LRVLLVEADYSTRQIISALLRKCSYRVAAVPDGLMAWETLKDGPNNIDLILTEVDLPLIS 100
Query: 78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G+ L V +E D +PVIMMS V+K + GA ++L+KP+R EL+N+WQHV
Sbjct: 101 GYALLTLV-MEHDFCKNIPVIMMSSHDSISKVLKCMLKGAADFLIKPVRRNELKNLWQHV 159
>gi|226497556|ref|NP_001141486.1| uncharacterized protein LOC100273598 [Zea mays]
gi|194704770|gb|ACF86469.1| unknown [Zea mays]
gi|414886440|tpg|DAA62454.1| TPA: hypothetical protein ZEAMMB73_402220 [Zea mays]
Length = 629
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+ + D ++ +LRKC Y V + A D+L+ D+V+++V +P M
Sbjct: 43 VRVLLAEGDDSTRHVISALLRKCGYRVAAASDGVKAWDLLKEKSFNVDLVLTEVELPLMS 102
Query: 78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GF L + +E D +PVIMMS V K + GA ++L+KPIR ELRN+WQHV
Sbjct: 103 GFLLLSTI-MEHDASKNIPVIMMSSHDSVSMVFKCMLKGAADFLVKPIRKNELRNLWQHV 161
>gi|147776739|emb|CAN72415.1| hypothetical protein VITISV_027904 [Vitis vinifera]
Length = 991
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V + A + L+ D+++++V +P +
Sbjct: 51 LRVLLVEPDDSTRQIIAALLRKCSYKVAAVSDGLKAWEALKGEPQNVDLILTEVELPSIS 110
Query: 78 GFKLHEQVGLEMDL----PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GF L + +E D+ PVIMMS V+K + GA ++L+KP+R EL N+WQHV
Sbjct: 111 GFALLSLI-MEDDICKKIPVIMMSSHDSISMVLKCMLKGAADFLVKPVRKNELXNLWQHV 169
Query: 134 AQQPKP--------FEESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTS 174
++ P + + V+ N SN D A+K+ + S
Sbjct: 170 WRRHAPTXGHVSQNLSIAQNKVEVSSXNNTASNHSSDYVVSAQKKKECS 218
>gi|357512643|ref|XP_003626610.1| Two-component response regulator-like PRR37 [Medicago truncatula]
gi|87240854|gb|ABD32712.1| Response regulator receiver; CCT [Medicago truncatula]
gi|355501625|gb|AES82828.1| Two-component response regulator-like PRR37 [Medicago truncatula]
Length = 636
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P LRVL+V+ D I+ +LR C Y+V A + L+ D+V+++V +P
Sbjct: 11 PTMLRVLLVEPDDSTRHIISALLRNCGYKVAAVRDGLKAWETLKNKSLDIDLVLTEVDLP 70
Query: 75 DMDGFKLHEQVGLEMD------LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
+ GF L Q+ MD +P+IMMS V K + +GA ++L+KP+R ELRN
Sbjct: 71 SISGFSLLTQI---MDHHNCKNIPLIMMSSQDSVSTVFKFMLNGAVDFLIKPVRRNELRN 127
Query: 129 IWQHV 133
+WQHV
Sbjct: 128 LWQHV 132
>gi|414888254|tpg|DAA64268.1| TPA: hypothetical protein ZEAMMB73_417596 [Zea mays]
Length = 177
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L VL+V+ D +++ +LR C+Y+V + A L +N D+V+++V MP +
Sbjct: 51 LNVLLVESDDSTRQVVSALLRCCMYQVISAENGQQAWAYLEDKRNNIDLVLTEVFMPGVS 110
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
G L ++ + ++PVIMMS V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 111 GISLLSRIMSHNICKNIPVIMMSSSDAMSTVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 170
Query: 135 QQ 136
+Q
Sbjct: 171 RQ 172
>gi|281308394|gb|ADA58345.1| pseudo-response regulator 5b [Brassica rapa]
Length = 628
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 12/127 (9%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIAL-------DMLRMSKNGYDIVISD 70
LRVL+V+ D +I+ +LRKC Y V + + A+ +MLR D+++++
Sbjct: 112 LRVLLVEADDSTRQIISALLRKCSYRVFPFHFSVAAVPDGLKAWEMLRGKPESVDLILTE 171
Query: 71 VHMPDMDGFKLHEQVGLEMDL----PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
V +P + G+ L + +E DL PVIMMS V K + GA +YL+KP+R EL
Sbjct: 172 VDLPSISGYALLTLI-MEHDLCKNIPVIMMSTQDSVNTVYKCMLKGAADYLVKPLRRNEL 230
Query: 127 RNIWQHV 133
RN+WQHV
Sbjct: 231 RNLWQHV 237
>gi|115480333|ref|NP_001063760.1| Os09g0532400 [Oryza sativa Japonica Group]
gi|68565887|sp|Q689G6.1|PRR95_ORYSJ RecName: Full=Two-component response regulator-like PRR95; AltName:
Full=Pseudo-response regulator 95; Short=OsPRR95
gi|51571881|dbj|BAD38857.1| pseudo-response regulator 95 [Oryza sativa Japonica Group]
gi|52075943|dbj|BAD46023.1| peudo-response regulator-like [Oryza sativa Japonica Group]
gi|52077226|dbj|BAD46270.1| peudo-response regulator-like [Oryza sativa Japonica Group]
gi|113631993|dbj|BAF25674.1| Os09g0532400 [Oryza sativa Japonica Group]
gi|215695172|dbj|BAG90363.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215695375|dbj|BAG90566.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641971|gb|EEE70103.1| hypothetical protein OsJ_30112 [Oryza sativa Japonica Group]
Length = 623
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+ + D I+ +LRKC Y V + A D+L+ D+V+++V +P M
Sbjct: 43 VRVLLAEGDDSTRHIICALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEVELPLMS 102
Query: 78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GF L + +E D +PVIMMS + V K + GA ++L+KPIR ELRN+WQHV
Sbjct: 103 GFLLLSTI-MEHDACKNIPVIMMSSNDSVSMVFKCMLKGAADFLVKPIRKNELRNLWQHV 161
>gi|357159597|ref|XP_003578497.1| PREDICTED: two-component response regulator-like PRR95-like
[Brachypodium distachyon]
Length = 626
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+ + D ++ +LRKC Y V + A ++L+ D+V+++V +P M
Sbjct: 39 VRVLLAEGDDSTRHVISALLRKCGYHVAAASDGVKAWEILKEKSFNIDLVLTEVELPAMS 98
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
GF L HE ++PVIMMS + V K + GA ++L+KPIR ELRN+WQ
Sbjct: 99 GFLLLSTIMEHEAC---KNIPVIMMSSNDAVSMVFKCMLKGAADFLVKPIRKNELRNLWQ 155
Query: 132 HV 133
HV
Sbjct: 156 HV 157
>gi|218202508|gb|EEC84935.1| hypothetical protein OsI_32150 [Oryza sativa Indica Group]
Length = 623
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+ + D I+ +LRKC Y V + A D+L+ D+V+++V +P M
Sbjct: 43 VRVLLAEGDDSTRHIICALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEVELPLMS 102
Query: 78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GF L + +E D +PVIMMS + V K + GA ++L+KPIR ELRN+WQHV
Sbjct: 103 GFLLLSTI-MEHDACKNIPVIMMSSNDSVSMVFKCMLKGAADFLVKPIRKNELRNLWQHV 161
>gi|168027173|ref|XP_001766105.1| circadian clock protein PRR4 [Physcomitrella patens subsp. patens]
gi|162682748|gb|EDQ69164.1| circadian clock protein PRR4 [Physcomitrella patens subsp. patens]
Length = 1056
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V+DD ++ +LR C YEVT +A +L + + +D+V++DV MP +
Sbjct: 306 LKVLLVEDDDATRHVVGALLRNCNYEVTPVANGSLAWGLLEEANSNFDLVLTDVVMPYLS 365
Query: 78 GFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ +P+++MS V + ++ GAC+YL+KP+R EL+N+WQHV
Sbjct: 366 GVGLLSKMMKREACKRVPIVIMSSYDSLGIVFRCLSKGACDYLVKPVRKNELKNLWQHV 424
>gi|281308390|gb|ADA58343.1| pseudo-response regulator 9 [Brassica rapa]
Length = 412
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V+ D +I+ +L+KC Y+V + A + L+ N D++++++ +P +
Sbjct: 26 LKVLLVESDDSTRQIITALLQKCSYKVVAVSDGLAAWETLKEKSNEIDLILTELDLPAIS 85
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
GF L HE ++PVIMMS + V+K + GA +YL+KP+R EL+N+WQ
Sbjct: 86 GFALLALVMEHEAC---KNIPVIMMSSEDSMTMVLKCMLKGAADYLIKPMRKNELKNLWQ 142
Query: 132 HV 133
HV
Sbjct: 143 HV 144
>gi|195604808|gb|ACG24234.1| two-component response regulator-like PRR73 [Zea mays]
Length = 765
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V++D +++ +LRKC YEV A L +N D+V+++V M +
Sbjct: 82 LRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWRYLEDLQNNIDLVLTEVFMTCLS 141
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ D+PVIMMS + V K ++ GA ++L+KP+R EL+N+WQHV
Sbjct: 142 GIGLLSKITSHKICKDIPVIMMSTNDSMSMVFKCLSKGAVDFLVKPLRKNELKNLWQHV 200
>gi|224132554|ref|XP_002321349.1| pseudo response regulator [Populus trichocarpa]
gi|222868345|gb|EEF05476.1| pseudo response regulator [Populus trichocarpa]
Length = 687
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 95/186 (51%), Gaps = 27/186 (14%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
LRVL+V+ D +I+ +LRKC Y+ V + A ++L+ + D+++++V +P +
Sbjct: 65 LRVLLVEADDSTRQIIAALLRKCSYKAVATVSDGLKAWEILKERPHNIDLILTEVDLPSV 124
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G+ L HE + ++PVIMMS + V K + GA +YL+KPIR ELRN+W
Sbjct: 125 SGYALLTLIMEHE---ICKNIPVIMMSSQDSIKTVYKCMLRGAADYLVKPIRKNELRNLW 181
Query: 131 QHV-----------------AQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDT 173
QHV Q K S+++ N + ++ ++ +E+ ++ D
Sbjct: 182 QHVWRKQSSLGGGNGPHDESVGQDKTEATSENNADGNHSSGEMASIQRSKEQAVKRSDSQ 241
Query: 174 STLKKP 179
S+ KP
Sbjct: 242 SSCTKP 247
>gi|255928914|gb|ACU42264.1| pseudo response regulator 37 [Pisum sativum]
Length = 780
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
++VL+VDDD ++ +LR C YEVT + A L N D+V+++V MP +
Sbjct: 74 IKVLLVDDDDSTRNVVCALLRNCGYEVTAVSNGLQAWKALEDPGNRIDLVLTEVAMPFVS 133
Query: 78 GF----KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G K+ + L+ ++PVIMMS V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 134 GIGLLCKIMSHIALK-NIPVIMMSSHDSMGIVFKCLSKGAADFLVKPIRRNELKNLWQHV 192
>gi|226499102|ref|NP_001151536.1| two-component response regulator-like PRR95 [Zea mays]
gi|195647486|gb|ACG43211.1| two-component response regulator-like PRR95 [Zea mays]
Length = 630
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+ + D ++ +LRKC Y V + A D+L+ D+V+++V +P M
Sbjct: 44 VRVLLAEGDDSTRHVISALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEVELPLMS 103
Query: 78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GF L + +E D +PVIMMS V K + GA ++L+KP+R ELRN+WQHV
Sbjct: 104 GFLLLSTI-MEHDASKNIPVIMMSSHDSVSMVFKCMLKGAADFLVKPLRKNELRNLWQHV 162
>gi|355469068|gb|ACU42263.2| pseudo response regulator 37 [Pisum sativum]
Length = 792
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
++VL+VDDD ++ +LR C YEVT + A L N D+V+++V MP +
Sbjct: 86 IKVLLVDDDDSTRNVVCALLRNCGYEVTAVSNGLQAWKALEDPGNRIDLVLTEVAMPFVS 145
Query: 78 GF----KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G K+ + L+ ++PVIMMS V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 146 GIGLLCKIMSHIALK-NIPVIMMSSHDSMGIVFKCLSKGAADFLVKPIRRNELKNLWQHV 204
>gi|326522516|dbj|BAK07720.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 479
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD--VHMP 74
GL+VL VDDDP++LR L + LR+C YEVT AL L + +G+D V++
Sbjct: 20 GLKVLAVDDDPVYLRTLTQTLRRCGYEVTAKPSPAEALKELEKNPDGFDFVMTAALTRGR 79
Query: 75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
MDGF L ++G + VI+ S + + +G GAC KP+R ++ IWQHV
Sbjct: 80 GMDGFDLLNRIGERYPV-VILFSGEESMETRRRGTQGGACYLAEKPMRDTQIYMIWQHV 137
>gi|326522564|dbj|BAK07744.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 759
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V++D ++ +LRKC YEV A L +N D+V+++V MP +
Sbjct: 83 LRVLLVENDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLS 142
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + +PVIMMS + V K ++ GA ++L+KPIR EL+ +WQH+
Sbjct: 143 GIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHI 201
>gi|326491043|dbj|BAK05621.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 250
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD--VHMP 74
GL+VL VDDDP++LR L + LR+C YEVT AL L + +G+D V++
Sbjct: 20 GLKVLAVDDDPVYLRTLTQTLRRCGYEVTAKPSPAEALKELEKNPDGFDFVMTAALTRGR 79
Query: 75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
MDGF L ++G + VI+ S + + +G GAC KP+R ++ IWQHV
Sbjct: 80 GMDGFDLLNRIGERYPV-VILFSGEESMETRRRGTQGGACYLAEKPMRDTQIYMIWQHV 137
>gi|356520227|ref|XP_003528765.1| PREDICTED: two-component response regulator-like PRR95-like isoform
2 [Glycine max]
Length = 722
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 19/182 (10%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y V A + L+ D+++++V +P +
Sbjct: 29 LRVLLVEADHSTRQIIAALLRKCSYTVIAVPDGLKAWETLKKKAPELDLILTEVELPAIS 88
Query: 78 GFKLHEQVGLEMDL----PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GF L + +E D+ PVIMMS +K + GA ++L+KPIR ELRN+WQHV
Sbjct: 89 GFALLSLI-MEHDICKNIPVIMMSSHDSVSMALKCMLKGAVDFLIKPIRKNELRNLWQHV 147
Query: 134 AQQ-------------PKPFE-ESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKP 179
++ PK + S+D+ + N+ + ++ +K+ E + ST P
Sbjct: 148 WRRHAISTPTQNTTFSPKKLKTASEDNSASNKSSGSVASSKKNNECSERLSEAQSTCTSP 207
Query: 180 RF 181
F
Sbjct: 208 IF 209
>gi|414590048|tpg|DAA40619.1| TPA: hypothetical protein ZEAMMB73_710468 [Zea mays]
Length = 596
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+ + D ++ +LRKC Y V + A D+L+ D+V+++V +P M
Sbjct: 44 VRVLLAEGDDSTRHVISALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEVELPLMS 103
Query: 78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GF L + +E D +PVIMMS V K + GA ++L+KP+R ELRN+WQHV
Sbjct: 104 GFLLLSTI-MEHDASKNIPVIMMSSHDSVSMVFKCMLKGASDFLVKPLRKNELRNLWQHV 162
>gi|307109141|gb|EFN57379.1| hypothetical protein CHLNCDRAFT_142774 [Chlorella variabilis]
Length = 998
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 47/123 (38%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK-NGYDIVISDVHM 73
P+ VL+VDD+ + +L +L KC Y VT + AL +LR S + + +V++DV M
Sbjct: 45 PSSCHVLLVDDERLTRTVLSSLLLKCGYRVTSASDGLEALRLLRGSAPDTFQLVLTDVCM 104
Query: 74 PDMDGFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
P+++G +L V + +L PV+MMS + V + V GA YL+KP+ KE+++IW
Sbjct: 105 PELNGIQLLSCVKQDANLRAVPVVMMSSVDQEETVAECVQQGAEEYLVKPVTKKEVQHIW 164
Query: 131 QHV 133
QHV
Sbjct: 165 QHV 167
>gi|356542579|ref|XP_003539744.1| PREDICTED: LOW QUALITY PROTEIN: two-component response
regulator-like PRR37-like [Glycine max]
Length = 777
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
++VL+V+DD ++ +L+ C Y+VT + A +L +NG D+V+++V MP +
Sbjct: 73 IKVLLVEDDDSTRHVVRALLQNCSYKVTAVSNGLQAWKVLEDPENGIDLVLTEVAMPILS 132
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
G L H+ + ++PVIMMS V K ++ GA ++L+KPIR EL+N+WQ
Sbjct: 133 GIGLLCKIMSHKTL---KNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQ 189
Query: 132 HV 133
HV
Sbjct: 190 HV 191
>gi|410624280|ref|ZP_11335086.1| transcriptional regulatory protein zraR [Glaciecola pallidula DSM
14239 = ACAM 615]
gi|410156211|dbj|GAC30460.1| transcriptional regulatory protein zraR [Glaciecola pallidula DSM
14239 = ACAM 615]
Length = 461
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 3/136 (2%)
Query: 2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK 61
SPA ++ + Q R+L+V+DD LR+L L+ Y+VT N A AL M M
Sbjct: 4 SPAKTNDLAASQTKKTPRLLLVEDDENLLRLLTIRLQGEGYDVTPSNNATQALRM--MFN 61
Query: 62 NGYDIVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
N +D+V+SD+ MP +DG +++ ++LPV++M+ G +D + G +L KP
Sbjct: 62 NTFDVVLSDIRMPGLDGLSFFDEIIHRYINLPVVLMTAHGTIKDAVAATQKGVFGFLTKP 121
Query: 121 IRIKELRNIWQHVAQQ 136
I ELR + Q+
Sbjct: 122 IDHDELRKVLARATQK 137
>gi|406895984|gb|EKD40397.1| sigma-54 dependent DNA-binding response regulator (NtrC-type
regulator), partial [uncultured bacterium]
Length = 202
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD L +LE L+ Y V + ALD+L+ D+++SD+ MP+M G
Sbjct: 6 RILIVDDDQNILEVLEARLQAAGYRVYRAASGPAALDLLK--SKPVDVLVSDMKMPEMSG 63
Query: 79 FKLH-EQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI----RIKELRNIWQHV 133
+L E V ++ LPVI ++ G D + V GA +YL KP +K++ I V
Sbjct: 64 MELFVEAVAIQPQLPVIFLTAYGTIPDAVTAVKAGAVDYLTKPFDGKELVKKIAGILATV 123
Query: 134 AQQPKPFE-ESDDSYSVNQGNWRTSNRRKD 162
+ P P +DDS + W TS +D
Sbjct: 124 EKTPAPVRPHADDSGFI----WGTSPAMQD 149
>gi|406596174|ref|YP_006747304.1| two-component system response regulator [Alteromonas macleodii ATCC
27126]
gi|407683118|ref|YP_006798292.1| two-component system response regulator [Alteromonas macleodii str.
'English Channel 673']
gi|407687035|ref|YP_006802208.1| two-component system response regulator [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|406373495|gb|AFS36750.1| two-component system response regulator [Alteromonas macleodii ATCC
27126]
gi|407244729|gb|AFT73915.1| two-component system response regulator [Alteromonas macleodii str.
'English Channel 673']
gi|407290415|gb|AFT94727.1| two-component system response regulator [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 446
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDDD LR+L L YEVT + AL ++ + YD+V+SD+ MP +DG
Sbjct: 11 LLLVDDDKSLLRLLTIRLEGEGYEVTAVEDGQSALR--KLQNDNYDVVLSDLRMPGLDGL 68
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
L E++ G+ D+PVI+M+ G D + G +L KP+ ELR + Q Q +
Sbjct: 69 SLFEEIMGIRKDIPVILMTAHGTIADAVAATQRGVFGFLPKPVDHDELRALLQKALSQSQ 128
Query: 139 PFEESD 144
+ D
Sbjct: 129 AAQPGD 134
>gi|410716774|gb|AFV78763.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716780|gb|AFV78766.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716802|gb|AFV78777.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716814|gb|AFV78783.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716864|gb|AFV78808.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716874|gb|AFV78813.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716918|gb|AFV78835.1| pseudo response regulator 1 [Pinus sylvestris]
Length = 565
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + L ++LRKC Y+VT + A + +L D+++++V +P
Sbjct: 21 VRILLCDKDPTNSQQLLELLRKCSYQVTAVSTAREVVSVLNTEGREIDLILAEVDLPKSK 80
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + L P++MMS VMK + GA +YL+KP+RI EL N+W H+
Sbjct: 81 GFKMLKYITRSTCLQRIPIVMMSAQDEVAVVMKCLKLGAADYLVKPLRINELLNLWMHM 139
>gi|410716750|gb|AFV78751.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716798|gb|AFV78775.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716942|gb|AFV78847.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716946|gb|AFV78849.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716952|gb|AFV78852.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716956|gb|AFV78854.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716958|gb|AFV78855.1| pseudo response regulator 1 [Pinus sylvestris]
Length = 565
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + L ++LRKC Y+VT + A + +L D+++++V +P
Sbjct: 21 VRILLCDKDPTNSQQLLELLRKCSYQVTAVSTAREVVSVLNTEGREIDLILAEVDLPKSK 80
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + L P++MMS VMK + GA +YL+KP+RI EL N+W H+
Sbjct: 81 GFKMLKYITRSTCLQRIPIVMMSAQDEVAVVMKCLKLGAADYLVKPLRINELLNLWMHM 139
>gi|410718344|gb|AFV79548.1| pseudo response regulator 1 [Pinus pinaster]
Length = 565
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + L ++LRKC Y+VT + A + +L D+++++V +P
Sbjct: 21 VRILLCDKDPTNSQQLLELLRKCSYQVTAVSTAREVVSVLNTEGREIDLILAEVDLPKSK 80
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + L P++MMS VMK + GA +YL+KP+RI EL N+W H+
Sbjct: 81 GFKMLKYITRSTCLQRIPIVMMSAQDEVAVVMKCLKLGAADYLVKPLRINELLNLWMHM 139
>gi|410716908|gb|AFV78830.1| pseudo response regulator 1 [Pinus sylvestris]
Length = 565
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + L ++LRKC Y+VT + A + +L D+++++V +P
Sbjct: 21 VRILLCDKDPTNSQQLLELLRKCSYQVTAVSTAREVVSVLNTEGREIDLILAEVDLPKSK 80
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + L P++MMS VMK + GA +YL+KP+RI EL N+W H+
Sbjct: 81 GFKMLKYITRSTCLQRIPIVMMSAQDEVAVVMKCLKLGAADYLVKPLRINELLNLWMHM 139
>gi|410716788|gb|AFV78770.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716832|gb|AFV78792.1| pseudo response regulator 1 [Pinus sylvestris]
Length = 565
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + L ++LRKC Y+VT + A + +L D+++++V +P
Sbjct: 21 VRILLCDKDPTNSQKLLELLRKCSYQVTAVSTAREVVSVLNTEGREIDLILAEVDLPKSK 80
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + L P++MMS VMK + GA +YL+KP+RI EL N+W H+
Sbjct: 81 GFKMLKYITRSTCLQRIPIVMMSAQDEVAVVMKCLKLGAADYLVKPLRINELLNLWMHM 139
>gi|410716910|gb|AFV78831.1| pseudo response regulator 1 [Pinus sylvestris]
Length = 565
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + L ++LRKC Y+VT + A + +L D+++++V +P
Sbjct: 21 VRILLCDKDPTNSQQLLELLRKCSYQVTAVSTAREVVSVLNTEGREIDLILAEVDLPKSK 80
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + L P++MMS VMK + GA +YL+KP+RI EL N+W H+
Sbjct: 81 GFKMLKYITRSTCLQRIPIVMMSAQDEVAVVMKCLKLGAADYLVKPLRINELLNLWMHM 139
>gi|410716904|gb|AFV78828.1| pseudo response regulator 1 [Pinus sylvestris]
Length = 565
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + L ++LRKC Y+VT + A + +L D+++++V +P
Sbjct: 21 VRILLCDKDPTNSQQLLELLRKCSYQVTAVSTAREVVSVLNTEGREIDLILAEVDLPKSK 80
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + L P++MMS VMK + GA +YL+KP+RI EL N+W H+
Sbjct: 81 GFKMLKYITRSTCLQRIPIVMMSAQDEVAVVMKCLKLGAADYLVKPLRINELLNLWMHM 139
>gi|410716876|gb|AFV78814.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716898|gb|AFV78825.1| pseudo response regulator 1 [Pinus sylvestris]
Length = 565
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + L ++LRKC Y+VT + A + +L D+++++V +P
Sbjct: 21 VRILLCDKDPTNSQQLLELLRKCSYQVTAVSTAREVVSVLNTEGREIDLILAEVDLPKSK 80
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + L P++MMS VMK + GA +YL+KP+RI EL N+W H+
Sbjct: 81 GFKMLKYITRSTCLQRIPIVMMSAQDEVAVVMKCLKLGAADYLVKPLRINELLNLWMHM 139
>gi|410716834|gb|AFV78793.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716890|gb|AFV78821.1| pseudo response regulator 1 [Pinus sylvestris]
Length = 565
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + L ++LRKC Y+VT + A + +L D+++++V +P
Sbjct: 21 VRILLCDKDPTNSQQLLELLRKCSYQVTAVSTAREVVSVLNTEGREIDLILAEVDLPKSK 80
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + L P++MMS VMK + GA +YL+KP+RI EL N+W H+
Sbjct: 81 GFKMLKYITRSTCLQRIPIVMMSAQDEVAVVMKCLKLGAADYLVKPLRINELLNLWMHM 139
>gi|410716824|gb|AFV78788.1| pseudo response regulator 1 [Pinus sylvestris]
Length = 565
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + L ++LRKC Y+VT + A + +L D+++++V +P
Sbjct: 21 VRILLCDKDPTNSQQLLELLRKCSYQVTAVSTAREVVSVLNTEGREIDLILAEVDLPKSK 80
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + L P++MMS VMK + GA +YL+KP+RI EL N+W H+
Sbjct: 81 GFKMLKYITRSTCLQRIPIVMMSAQDEVAVVMKCLKLGAADYLVKPLRINELLNLWMHM 139
>gi|410716728|gb|AFV78740.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716732|gb|AFV78742.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716734|gb|AFV78743.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716736|gb|AFV78744.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716740|gb|AFV78746.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716746|gb|AFV78749.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716748|gb|AFV78750.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716754|gb|AFV78753.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716758|gb|AFV78755.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716760|gb|AFV78756.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716762|gb|AFV78757.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716764|gb|AFV78758.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716766|gb|AFV78759.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716770|gb|AFV78761.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716782|gb|AFV78767.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716786|gb|AFV78769.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716790|gb|AFV78771.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716792|gb|AFV78772.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716794|gb|AFV78773.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716796|gb|AFV78774.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716800|gb|AFV78776.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716804|gb|AFV78778.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716806|gb|AFV78779.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716812|gb|AFV78782.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716816|gb|AFV78784.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716818|gb|AFV78785.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716820|gb|AFV78786.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716822|gb|AFV78787.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716826|gb|AFV78789.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716830|gb|AFV78791.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716836|gb|AFV78794.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716838|gb|AFV78795.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716840|gb|AFV78796.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716842|gb|AFV78797.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716844|gb|AFV78798.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716846|gb|AFV78799.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716848|gb|AFV78800.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716850|gb|AFV78801.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716852|gb|AFV78802.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716854|gb|AFV78803.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716856|gb|AFV78804.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716858|gb|AFV78805.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716860|gb|AFV78806.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716866|gb|AFV78809.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716868|gb|AFV78810.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716870|gb|AFV78811.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716872|gb|AFV78812.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716878|gb|AFV78815.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716880|gb|AFV78816.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716882|gb|AFV78817.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716884|gb|AFV78818.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716886|gb|AFV78819.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716888|gb|AFV78820.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716892|gb|AFV78822.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716894|gb|AFV78823.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716896|gb|AFV78824.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716900|gb|AFV78826.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716902|gb|AFV78827.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716906|gb|AFV78829.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716912|gb|AFV78832.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716914|gb|AFV78833.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716916|gb|AFV78834.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716920|gb|AFV78836.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716922|gb|AFV78837.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716924|gb|AFV78838.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716926|gb|AFV78839.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716928|gb|AFV78840.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716930|gb|AFV78841.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716932|gb|AFV78842.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716934|gb|AFV78843.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716936|gb|AFV78844.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716938|gb|AFV78845.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716940|gb|AFV78846.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716944|gb|AFV78848.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716948|gb|AFV78850.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716950|gb|AFV78851.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716954|gb|AFV78853.1| pseudo response regulator 1 [Pinus sylvestris]
Length = 565
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + L ++LRKC Y+VT + A + +L D+++++V +P
Sbjct: 21 VRILLCDKDPTNSQQLLELLRKCSYQVTAVSTAREVVSVLNTEGREIDLILAEVDLPKSK 80
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + L P++MMS VMK + GA +YL+KP+RI EL N+W H+
Sbjct: 81 GFKMLKYITRSTCLQRIPIVMMSAQDEVAVVMKCLKLGAADYLVKPLRINELLNLWMHM 139
>gi|410716730|gb|AFV78741.1| pseudo response regulator 1 [Pinus sylvestris]
Length = 565
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + L ++LRKC Y+VT + A + +L D+++++V +P
Sbjct: 21 VRILLCDKDPTNSQQLLELLRKCSYQVTAVSTAREVVSVLNTEGREIDLILAEVDLPKSK 80
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + L P++MMS VMK + GA +YL+KP+RI EL N+W H+
Sbjct: 81 GFKMLKYITRSTCLQRIPIVMMSAQDEVAVVMKCLKLGAADYLVKPLRINELLNLWMHM 139
>gi|348028780|ref|YP_004871466.1| two-component system response regulator [Glaciecola nitratireducens
FR1064]
gi|347946123|gb|AEP29473.1| two-component system response regulator [Glaciecola nitratireducens
FR1064]
Length = 461
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK 61
SPA + ++ +Q R+L+V+DD LR+L L+ Y+VT A AL M M
Sbjct: 4 SPAETEISALNQTKNRPRLLLVEDDENLLRLLTIRLQGEGYDVTSSENATQALRM--MFN 61
Query: 62 NGYDIVISDVHMPDMDGFKLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
N +D+V+SD+ MP +DG +++ + LPV++M+ G +D + G +L KP
Sbjct: 62 NTFDVVLSDIRMPGLDGLSFFDEILHRYNNLPVVLMTAHGTIKDAVAATQKGVFGFLTKP 121
Query: 121 IRIKELRNIWQHVAQQPKPFEESD 144
I ELR + + Q+ E D
Sbjct: 122 IDHDELRKVLKRATQKNATSEIGD 145
>gi|410716778|gb|AFV78765.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716862|gb|AFV78807.1| pseudo response regulator 1 [Pinus sylvestris]
Length = 565
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + L ++LRKC Y+VT + A + +L D+++++V +P
Sbjct: 21 VRILLCDKDPTNSQQLLELLRKCSYQVTAVSTAREVVSVLNTEGREIDLILAEVDLPKSK 80
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + L P++MMS VMK + GA +YL+KP+RI EL N+W H+
Sbjct: 81 GFKMLKYITRSTCLQRIPIVMMSAQDEVAVVMKCLKLGAADYLVKPLRINELLNLWMHM 139
>gi|410716738|gb|AFV78745.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716742|gb|AFV78747.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716744|gb|AFV78748.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716752|gb|AFV78752.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716756|gb|AFV78754.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716768|gb|AFV78760.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716772|gb|AFV78762.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716776|gb|AFV78764.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716784|gb|AFV78768.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716808|gb|AFV78780.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716810|gb|AFV78781.1| pseudo response regulator 1 [Pinus sylvestris]
gi|410716828|gb|AFV78790.1| pseudo response regulator 1 [Pinus sylvestris]
Length = 565
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + L ++LRKC Y+VT + A + +L D+++++V +P
Sbjct: 21 VRILLCDKDPTNSQQLLELLRKCSYQVTAVSTAREVVSVLNTEGREIDLILAEVDLPKSK 80
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + L P++MMS VMK + GA +YL+KP+RI EL N+W H+
Sbjct: 81 GFKMLKYITRSTCLQRIPIVMMSAQDEVAVVMKCLKLGAADYLVKPLRINELLNLWMHM 139
>gi|302782157|ref|XP_002972852.1| hypothetical protein SELMODRAFT_450934 [Selaginella moellendorffii]
gi|300159453|gb|EFJ26073.1| hypothetical protein SELMODRAFT_450934 [Selaginella moellendorffii]
Length = 639
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V+DD ++ +LR C Y+V A +L D+V++DV MP +
Sbjct: 42 LKVLLVEDDDSTRHVVAALLRNCGYQVVPAANGLQAWSLLDDRNREIDLVLTDVVMPGLS 101
Query: 78 GFKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + +PV+MMS T V K +T GA ++L+KP+R EL+N+WQH
Sbjct: 102 GLGLLSKIMHHKNHQKVPVVMMSSHDSTNVVFKCLTKGAADFLVKPVRKNELKNLWQHA 160
>gi|356571269|ref|XP_003553801.1| PREDICTED: two-component response regulator-like PRR95-like
[Glycine max]
Length = 695
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V A + L+ D+++++V +P +
Sbjct: 33 LRVLLVEADDSTRQIIAALLRKCGYKVVAFCDGLKAWETLKNKAFDLDLILTEVDLPSIS 92
Query: 78 GFKLHEQVGLEMDL----PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GF L + +E D+ PVIMMS V K + GA ++L+KP+R ELRN+WQHV
Sbjct: 93 GFSLLTLI-MEHDICKNIPVIMMSSHDSVSMVFKCMLKGAADFLIKPVRKNELRNLWQHV 151
>gi|51980216|gb|AAU20772.1| timing of CAB expression 1 protein [Castanea sativa]
Length = 545
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+LV D+D L + +L KC Y+VT A +D L DI+++++ +P
Sbjct: 32 VRILVCDNDAKSLEEVSTLLLKCSYQVTSVRSARQVIDALNAEGANIDIILAELDLPLAK 91
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G KL + + + DL PVIMMS V+K + GA +YL+KP+R EL N+W HV
Sbjct: 92 GMKLLKYINRDNDLRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHV 150
>gi|242093588|ref|XP_002437284.1| hypothetical protein SORBIDRAFT_10g024183 [Sorghum bicolor]
gi|241915507|gb|EER88651.1| hypothetical protein SORBIDRAFT_10g024183 [Sorghum bicolor]
Length = 92
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 58/85 (68%), Gaps = 2/85 (2%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG--YDIVI 68
+D FP GL VL V+DD + ++LE+ L+ Y A++ LDMLR K+G +D+VI
Sbjct: 3 TDTFPIGLSVLAVEDDCVCCKVLERKLKYYNYNAIMVMNAQMVLDMLRERKDGNWFDLVI 62
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPV 93
S+V +P+MDGF L + +GLEMDLPV
Sbjct: 63 SNVIIPNMDGFNLLKLIGLEMDLPV 87
>gi|85860540|ref|YP_462742.1| sigma-54-dependent transcriptional regulator [Syntrophus
aciditrophicus SB]
gi|85723631|gb|ABC78574.1| sigma-54-dependent transcriptional regulator [Syntrophus
aciditrophicus SB]
Length = 443
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R++V+DDD + L++ LR+ Y+V C A D+L+ + YD+VISD+ MPDMD
Sbjct: 3 IRIIVIDDDAVACEFLQEALRRADYDVDICTSAR---DVLKGDLSRYDLVISDIRMPDMD 59
Query: 78 GFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G +L ++ + LPVI+M+ G + M+ + GA +Y+ KP + +RN+ + V
Sbjct: 60 GLQLLRRIHQQWPALPVILMTAYGSLESTMEALQLGAWDYISKPFSPEAIRNMVKKV 116
>gi|117619500|ref|YP_858484.1| transcriptional regulatory protein ZraR [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117560907|gb|ABK37855.1| transcriptional regulatory protein ZraR [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 426
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD L+++ LR YEV + AE ALD LR + D+V+SD+ M MDG
Sbjct: 3 RILLVDDDASLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQR--ADLVLSDLRMAGMDG 60
Query: 79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L E++ + + LPVI+M+ G D ++ G ++L KPI EL +H
Sbjct: 61 LALFERIQSQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPIDKDELFATIEHALSLT 120
Query: 138 KPFEESD 144
+P + D
Sbjct: 121 RPKQRQD 127
>gi|356504197|ref|XP_003520885.1| PREDICTED: two-component response regulator-like PRR95-like
[Glycine max]
Length = 703
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +L KC Y+V A + L+ + D+++++V +P +
Sbjct: 35 LRVLLVEADDSTRQIISALLHKCSYKVVAFCDGLKAWETLKNKPSDIDLILTEVDLPSIS 94
Query: 78 GFKLHEQVGLEMDL----PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GF L + +E D+ PVIMMS V+K + GA ++L+KP+R ELRN+WQHV
Sbjct: 95 GFSLLTLI-MEHDICKNIPVIMMSSHDSVSMVLKCMLKGAADFLIKPVRRNELRNLWQHV 153
>gi|224128053|ref|XP_002320232.1| pseudo response regulator [Populus trichocarpa]
gi|222861005|gb|EEE98547.1| pseudo response regulator [Populus trichocarpa]
Length = 717
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L VL+V+ D +I+ +LRKC Y V +A + L+ + D+++++V +P +
Sbjct: 44 LSVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLMAWETLKGGPHNIDLILTEVELPLIS 103
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G+ L V + ++PVIMMS V+K + GA ++L+KP+R ELRN+WQHV
Sbjct: 104 GYALLTLVTEHAVCKNIPVIMMSSQDSISMVLKCMLKGAADFLIKPVRKNELRNLWQHV 162
>gi|330831457|ref|YP_004394409.1| two-component system response regulator [Aeromonas veronii B565]
gi|406675314|ref|ZP_11082503.1| hypothetical protein HMPREF1170_00711 [Aeromonas veronii AMC35]
gi|423203229|ref|ZP_17189807.1| hypothetical protein HMPREF1167_03390 [Aeromonas veronii AER39]
gi|423211893|ref|ZP_17198426.1| hypothetical protein HMPREF1169_03944 [Aeromonas veronii AER397]
gi|328806593|gb|AEB51792.1| Two-component system response regulator [Aeromonas veronii B565]
gi|404612694|gb|EKB09752.1| hypothetical protein HMPREF1169_03944 [Aeromonas veronii AER397]
gi|404613458|gb|EKB10480.1| hypothetical protein HMPREF1167_03390 [Aeromonas veronii AER39]
gi|404627646|gb|EKB24446.1| hypothetical protein HMPREF1170_00711 [Aeromonas veronii AMC35]
Length = 426
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD L+++ LR YEV + AE ALD LR + D+V+SD+ M MDG
Sbjct: 3 RILLVDDDVSLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQR--ADLVLSDLRMAGMDG 60
Query: 79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L E++ + + LPVI+M+ G D ++ G ++L KPI EL +H
Sbjct: 61 LALFERIQAQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPINKDELFATIEHALSLT 120
Query: 138 KPFEESD 144
+P ++ +
Sbjct: 121 RPKQQQE 127
>gi|356520225|ref|XP_003528764.1| PREDICTED: two-component response regulator-like PRR95-like isoform
1 [Glycine max]
Length = 703
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y V A + L+ D+++++V +P +
Sbjct: 29 LRVLLVEADHSTRQIIAALLRKCSYTVIAVPDGLKAWETLKKKAPELDLILTEVELPAIS 88
Query: 78 GFKLHEQVGLEMDL----PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GF L + +E D+ PVIMMS +K + GA ++L+KPIR ELRN+WQHV
Sbjct: 89 GFALLSLI-MEHDICKNIPVIMMSSHDSVSMALKCMLKGAVDFLIKPIRKNELRNLWQHV 147
>gi|410632594|ref|ZP_11343249.1| transcriptional regulatory protein zraR [Glaciecola arctica
BSs20135]
gi|410147831|dbj|GAC20116.1| transcriptional regulatory protein zraR [Glaciecola arctica
BSs20135]
Length = 448
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
VL+VDDD LR++ L+ Y V + + AL ++ + +D+V+SD+ MP +DG
Sbjct: 11 VLLVDDDESLLRLMAIRLKGEGYNVQSASGGKEALKLI--NTQNFDVVLSDLRMPGLDGL 68
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
L E++ GL D+PVI+M+ G QD ++ G +L KPI ELR++ + Q
Sbjct: 69 SLFEEIMGLRKDVPVILMTAHGTIQDAVEATQRGVFGFLTKPIDHDELRSLMKKAVSQ-- 126
Query: 139 PFEESDDSYSVNQGNW 154
S G W
Sbjct: 127 -------SQGAQNGKW 135
>gi|224064372|ref|XP_002301443.1| pseudo response regulator [Populus trichocarpa]
gi|222843169|gb|EEE80716.1| pseudo response regulator [Populus trichocarpa]
Length = 694
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y V+ +A + L+ + D+++++V +P +
Sbjct: 44 LRVLLVEADDSTRQIIVALLRKCGYRVSAVPDGLMAWETLKERPHSIDLILTEVELPLIS 103
Query: 78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G+ V +E D +PVIMMS V+K + G+ ++L+KP+R ELRN+WQHV
Sbjct: 104 GYAFLALV-MEHDVCKNIPVIMMSSHDSISVVLKCMLKGSADFLVKPVRKNELRNLWQHV 162
>gi|423204367|ref|ZP_17190923.1| hypothetical protein HMPREF1168_00558 [Aeromonas veronii AMC34]
gi|404627232|gb|EKB24037.1| hypothetical protein HMPREF1168_00558 [Aeromonas veronii AMC34]
Length = 426
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD L+++ LR YEV + AE ALD LR + D+V+SD+ M MDG
Sbjct: 3 RILLVDDDVSLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRA--DLVLSDLRMGGMDG 60
Query: 79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L E++ + + LPVI+M+ G D ++ G ++L KPI EL +H
Sbjct: 61 LALFERIQAQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPINKDELLATIEHALSLT 120
Query: 138 KPFEESD 144
+P ++ +
Sbjct: 121 RPKQQQE 127
>gi|242036083|ref|XP_002465436.1| hypothetical protein SORBIDRAFT_01g038820 [Sorghum bicolor]
gi|241919290|gb|EER92434.1| hypothetical protein SORBIDRAFT_01g038820 [Sorghum bicolor]
Length = 765
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRV++V++D +++ +LRKC YEV A L +N D+V+++V MP +
Sbjct: 80 LRVMLVENDDSTRQVVSALLRKCCYEVIPAENGSHAWRYLEDLQNNIDLVLTEVFMPCLS 139
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ D+PVIMMS + V K ++ GA ++L+KP+R EL+N+WQHV
Sbjct: 140 GIGLLSKITSHKICKDIPVIMMSSNDSMSMVFKCLSKGAVDFLVKPLRKNELKNLWQHV 198
>gi|411011708|ref|ZP_11388037.1| two-component system response regulator [Aeromonas aquariorum AAK1]
Length = 426
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD L+++ LR YEV + AE ALD LR + D+V+SD+ M MDG
Sbjct: 3 RILLVDDDASLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRA--DLVLSDLRMAGMDG 60
Query: 79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L E++ + + LPVI+M+ G D ++ G ++L KPI EL +H
Sbjct: 61 LALFERIQSQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPIDKDELFATIEHALSLT 120
Query: 138 KP 139
+P
Sbjct: 121 RP 122
>gi|302796211|ref|XP_002979868.1| hypothetical protein SELMODRAFT_450936 [Selaginella moellendorffii]
gi|300152628|gb|EFJ19270.1| hypothetical protein SELMODRAFT_450936 [Selaginella moellendorffii]
Length = 865
Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 5/119 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V+DD ++ +LR C YEVT A ++L + D+V++D+ MP +
Sbjct: 109 LKVLLVEDDDSTRHVVAALLRNCGYEVTPAASGLQAWEILETRSSSVDLVLTDLMMPRLS 168
Query: 78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
G +L ++ + D +PV+MMS V+K ++ GA ++L+KP+R EL+N+WQH
Sbjct: 169 GIELLGKI-MSRDSPKRIPVVMMSCLDSMDVVLKCLSKGAVDFLVKPVRKNELKNLWQH 226
>gi|410616337|ref|ZP_11327329.1| transcriptional regulatory protein zraR [Glaciecola polaris LMG
21857]
gi|410164046|dbj|GAC31467.1| transcriptional regulatory protein zraR [Glaciecola polaris LMG
21857]
Length = 449
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLR-MSKNGYDIVISDVHMPDMD 77
++L+VDDD LR++ L Y V AE D LR M+ +D+V+SD+ MP +D
Sbjct: 11 QILLVDDDESLLRLMAIRLEGEGYSV---QSAEGGKDALRLMNTQNFDVVLSDLRMPGLD 67
Query: 78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
G L E++ L DLPVI+M+ G QD ++ G +L KPI ELR++ Q
Sbjct: 68 GLSLFEEIMSLGKDLPVILMTAHGTIQDAVEATQRGVFGFLTKPIDHTELRDLLAKAVSQ 127
Query: 137 PKPFEESDDSYSVNQGNWR 155
S G+WR
Sbjct: 128 ---------SQGSQTGDWR 137
>gi|330794882|ref|XP_003285505.1| hypothetical protein DICPUDRAFT_97064 [Dictyostelium purpureum]
gi|325084508|gb|EGC37934.1| hypothetical protein DICPUDRAFT_97064 [Dictyostelium purpureum]
Length = 729
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 83/146 (56%), Gaps = 19/146 (13%)
Query: 2 SPASSSVAVSDQF-PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS 60
SP++ V+ +++ P+ +R+LVVDDD + ++LE +L+K Y VT + EIA D +
Sbjct: 92 SPSTHKVSEGEEYSPSKVRILVVDDDDVQRKVLENLLKKFHYNVTLVSNGEIAWDNISSG 151
Query: 61 KNGYDIVISDVHMPDMDGFKLHEQVG---LEMDLPVIMMSVDGCTQDVMKG---VTHGAC 114
+ YD+V++DV MP + GF L +++ + ++PVI+MS G D + G
Sbjct: 152 QQKYDLVLTDVMMPHITGFDLLQRINDHPIYKNIPVILMS--GTAVDYKYANDTIKIGGQ 209
Query: 115 NYLLKPIRIKE---------LRNIWQ 131
++L KPI KE L++IWQ
Sbjct: 210 DFLTKPI-AKELLKKKIDTVLQSIWQ 234
>gi|356559647|ref|XP_003548110.1| PREDICTED: two-component response regulator-like PRR95-like
[Glycine max]
Length = 706
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 22/180 (12%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC+ V +A + L+ + D+++++V +P +
Sbjct: 32 LRVLLVEADHSTRQIIAALLRKCIIAVPDGLKA---WETLKKKASELDLILTEVELPAIS 88
Query: 78 GFKLHEQVGLEMDL----PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GF L + +E D+ PVIMMS +K + +GA ++L+KPIR ELRN+WQHV
Sbjct: 89 GFALLSLI-MEHDICKSIPVIMMSSHDSVNMALKCMLNGAVDFLIKPIRKNELRNLWQHV 147
Query: 134 AQQ-------------PKPFE-ESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKP 179
++ PK + S+D+ + N+ N ++ +K+ E + ST P
Sbjct: 148 WRRHTIITPTQNTTFSPKKLKTASEDNSASNKSNGSVASSKKNNECSERLSEAQSTCTSP 207
>gi|407699472|ref|YP_006824259.1| two-component system response regulator [Alteromonas macleodii str.
'Black Sea 11']
gi|407248619|gb|AFT77804.1| two-component system response regulator [Alteromonas macleodii str.
'Black Sea 11']
Length = 446
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDDD LR+L L Y VT + AL ++ + YD+V+SD+ MP +DG
Sbjct: 11 LLLVDDDKSLLRLLTIRLEGEGYHVTAVEDGQSALR--KLQNDNYDVVLSDLRMPGLDGL 68
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
L E++ G+ D+PVI+M+ G D + G +L KP+ ELR + Q Q +
Sbjct: 69 SLFEEIMGIRKDIPVILMTAHGTIADAVAATQRGVFGFLPKPVDHDELRALLQKALSQSQ 128
Query: 139 PFEESD 144
+ D
Sbjct: 129 AAQPGD 134
>gi|157399680|gb|ABV53464.1| pseudo-response regulator 5 [Castanea sativa]
Length = 698
Score = 79.3 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 20/169 (11%)
Query: 31 RILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG---L 87
+I+ +LRKC Y VT A ++LR + D+++++V +P + GF L + +
Sbjct: 75 QIIGALLRKCSYRVTAVPDGLKAWEILRGRPHNIDLILTEVDLPAISGFALLTLIAEHEI 134
Query: 88 EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK-------PF 140
++PVIMMS V K + GA +YL+KPIR EL+N+WQHV ++ P
Sbjct: 135 CKNIPVIMMSAQDSVSTVYKCMLRGAADYLVKPIRRNELKNLWQHVWRKQSSNLGINDPQ 194
Query: 141 EE----------SDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKP 179
+E S+++ + + N R + +++ E+ + D+ S+ KP
Sbjct: 195 DESVAQQQLEATSENNAASKRSNGRMACIQRNTEQIEKGSDEQSSCTKP 243
>gi|423198665|ref|ZP_17185248.1| hypothetical protein HMPREF1171_03280 [Aeromonas hydrophila SSU]
gi|404629855|gb|EKB26580.1| hypothetical protein HMPREF1171_03280 [Aeromonas hydrophila SSU]
Length = 426
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD L+++ LR YEV + AE ALD LR + D+V+SD+ M MDG
Sbjct: 3 RILLVDDDASLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRA--DLVLSDLRMAGMDG 60
Query: 79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L E++ + + LPVI+M+ G D ++ G ++L KPI EL +H
Sbjct: 61 LALFERIQSQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPIDKDELFATIEHALSLT 120
Query: 138 KP 139
+P
Sbjct: 121 RP 122
>gi|225435163|ref|XP_002281776.1| PREDICTED: two-component response regulator-like PRR73-like [Vitis
vinifera]
Length = 785
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D ++ +LR C YEVT A +L N DIV+++V MP +
Sbjct: 95 LKVLLVENDDSTRHVVTALLRNCSYEVTAVANGLQAWKILEDLTNHIDIVLTEVVMPFIS 154
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
G L H+ ++PVIMMS V K ++ GA ++L+KPIR EL+N+WQ
Sbjct: 155 GIGLLCKIMSHKTF---KNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRKNELKNLWQ 211
Query: 132 HV 133
HV
Sbjct: 212 HV 213
>gi|451946632|ref|YP_007467227.1| histidine kinase [Desulfocapsa sulfexigens DSM 10523]
gi|451905980|gb|AGF77574.1| histidine kinase [Desulfocapsa sulfexigens DSM 10523]
Length = 757
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 9 AVSDQFPAG-LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIV 67
A++ Q P+G VL+VDDD +++ E+ML+ Y+V+ NR E AL+ R N +D++
Sbjct: 621 AITRQLPSGDEHVLIVDDDEAIVKMEEQMLKSFGYQVSAFNRCEEALNEFRSHPNAFDLI 680
Query: 68 ISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
I+D+ MP + G +L +V L D+PVI+ + + K G C YL+KP+ K+L
Sbjct: 681 ITDMTMPGITGLQLTREVLALRSDMPVILCTGFSELINEKKAKDAGICQYLMKPLLKKDL 740
>gi|410861006|ref|YP_006976240.1| two-component system response regulator [Alteromonas macleodii
AltDE1]
gi|410818268|gb|AFV84885.1| two-component system response regulator [Alteromonas macleodii
AltDE1]
Length = 446
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDDD LR+L L Y+VT + AL ++ + +D+V+SD+ MP +DG
Sbjct: 11 LLLVDDDKSLLRLLTIRLEGEGYDVTAVEDGQSALR--KLQNDSFDVVLSDLRMPGLDGL 68
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
L E++ G+ D+PVI+M+ G D + G +L KP+ ELR + Q Q +
Sbjct: 69 SLFEEIMGIRKDIPVILMTAHGTIADAVAATQRGVFGFLPKPVDHDELRTLLQKALSQSQ 128
Query: 139 PFEESD 144
+ D
Sbjct: 129 AAQPGD 134
>gi|333893877|ref|YP_004467752.1| two-component system response regulator [Alteromonas sp. SN2]
gi|332993895|gb|AEF03950.1| two-component system response regulator [Alteromonas sp. SN2]
Length = 446
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 12/139 (8%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDDD LR+L L Y+VT AL ++ + +D+V+SD+ MP +DG
Sbjct: 11 LLLVDDDKSLLRLLTIRLEGEGYQVTAVEDGNAALR--KLQNDAFDVVLSDLRMPGLDGL 68
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
L E++ G+ D+PVI+M+ G D + G +L KP+ ELR + Q Q
Sbjct: 69 SLFEEIMGIRKDIPVILMTAHGTISDAVAATQRGVFGFLPKPVDHDELRTLLQKALSQ-- 126
Query: 139 PFEESDDSYSVNQGNWRTS 157
S + G W S
Sbjct: 127 -------SQAAQPGEWAKS 138
>gi|145297354|ref|YP_001140195.1| two-component system response regulator [Aeromonas salmonicida
subsp. salmonicida A449]
gi|418362107|ref|ZP_12962751.1| two-component system response regulator [Aeromonas salmonicida
subsp. salmonicida 01-B526]
gi|142850126|gb|ABO88447.1| two-component system response regulator [Aeromonas salmonicida
subsp. salmonicida A449]
gi|356686742|gb|EHI51335.1| two-component system response regulator [Aeromonas salmonicida
subsp. salmonicida 01-B526]
Length = 426
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD L+++ LR YEV + AE ALD LR + D+V+SD+ M MDG
Sbjct: 3 RILLVDDDVSLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRA--DLVLSDLRMAGMDG 60
Query: 79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L E++ + + LPVI+M+ G D ++ G ++L KPI EL +H
Sbjct: 61 LALFERIQSQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPIDKDELFATIEHALSLT 120
Query: 138 KPFEESD 144
+P ++ +
Sbjct: 121 RPKQQQE 127
>gi|297736458|emb|CBI25329.3| unnamed protein product [Vitis vinifera]
Length = 769
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D +++ +LR C YEVT A +L N D+V+++V +P +
Sbjct: 94 LKVLLVENDNSTRQVVSALLRNCSYEVTAVANGVQAWSILDDLTNHVDLVLAEVALPSLS 153
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
G L H+ ++PVIMMS V K ++ GA ++ +KPIR EL+N+WQ
Sbjct: 154 GIGLLCKIMNHKAC---KNIPVIMMSSHDSVGIVFKCLSKGAVDFFVKPIRKNELKNLWQ 210
Query: 132 HV 133
HV
Sbjct: 211 HV 212
>gi|168027167|ref|XP_001766102.1| circadian clock protein PRR2 [Physcomitrella patens subsp. patens]
gi|162682745|gb|EDQ69161.1| circadian clock protein PRR2 [Physcomitrella patens subsp. patens]
Length = 1143
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 5/114 (4%)
Query: 24 DDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHE 83
+DD ++ +LR C YEVT +A +L + + +D+V++DV MP + G +
Sbjct: 189 EDDDATRHVVGALLRNCNYEVTSVANGSLAWGLLEEANSNFDLVLTDVVMPCLSGVGILS 248
Query: 84 QVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
++ L+ + +P+++MS V + ++ GAC+YL+KP+R EL+N+WQHV
Sbjct: 249 KM-LKREACKRVPIVIMSSYDSLNIVFRCLSKGACDYLVKPVRKNELKNLWQHV 301
>gi|359486449|ref|XP_002275645.2| PREDICTED: two-component response regulator-like PRR73 [Vitis
vinifera]
Length = 747
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D +++ +LR C YEVT A +L N D+V+++V +P +
Sbjct: 72 LKVLLVENDNSTRQVVSALLRNCSYEVTAVANGVQAWSILDDLTNHVDLVLAEVALPSLS 131
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
G L H+ ++PVIMMS V K ++ GA ++ +KPIR EL+N+WQ
Sbjct: 132 GIGLLCKIMNHKAC---KNIPVIMMSSHDSVGIVFKCLSKGAVDFFVKPIRKNELKNLWQ 188
Query: 132 HV 133
HV
Sbjct: 189 HV 190
>gi|297746178|emb|CBI16234.3| unnamed protein product [Vitis vinifera]
Length = 482
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D ++ +LR C YEVT A +L N DIV+++V MP +
Sbjct: 95 LKVLLVENDDSTRHVVTALLRNCSYEVTAVANGLQAWKILEDLTNHIDIVLTEVVMPFIS 154
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
G L H+ ++PVIMMS V K ++ GA ++L+KPIR EL+N+WQ
Sbjct: 155 GIGLLCKIMSHKTF---KNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRKNELKNLWQ 211
Query: 132 HV 133
HV
Sbjct: 212 HV 213
>gi|325910796|dbj|BAJ83828.1| circadian response regulator 2a [Physcomitrella patens subsp.
patens]
Length = 915
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 5/114 (4%)
Query: 24 DDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHE 83
+DD ++ +LR C YEVT +A +L + + +D+V++DV MP + G +
Sbjct: 189 EDDDATRHVVGALLRNCNYEVTSVANGSLAWGLLEEANSNFDLVLTDVVMPCLSGVGILS 248
Query: 84 QVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
++ L+ + +P+++MS V + ++ GAC+YL+KP+R EL+N+WQHV
Sbjct: 249 KM-LKREACKRVPIVIMSSYDSLNIVFRCLSKGACDYLVKPVRKNELKNLWQHV 301
>gi|410637506|ref|ZP_11348086.1| transcriptional regulatory protein zraR [Glaciecola lipolytica E3]
gi|410143129|dbj|GAC15291.1| transcriptional regulatory protein zraR [Glaciecola lipolytica E3]
Length = 451
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD LR++ L+ Y+V + AL +L + +D+V+SD+ MP +DG
Sbjct: 11 RILLVDDDENLLRLMTIRLQGEGYQVATAEGGKEALRLL--NTQSFDVVLSDLRMPGLDG 68
Query: 79 FKLHEQ-VGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L E+ V L D+PVI+M+ G QD ++ G +L KPI LR + Q
Sbjct: 69 LSLFEEIVSLRRDIPVILMTAHGTIQDAVEATQRGVFGFLTKPIDHDALRELLVKAVSQ- 127
Query: 138 KPFEESDDSYSVNQGNW 154
S S G W
Sbjct: 128 --------SQSAQNGTW 136
>gi|328952068|ref|YP_004369402.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfobacca acetoxidans DSM 11109]
gi|328452392|gb|AEB08221.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfobacca acetoxidans DSM 11109]
Length = 455
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 68/108 (62%), Gaps = 3/108 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDD+ +L ++E +L YEV + E AL++ R +N D+V++D+ MP M G
Sbjct: 4 ILVVDDEKNYLLVMETLLAGAGYEVFTADSGETALELTR--RNDLDLVVTDMKMPRMSGI 61
Query: 80 KLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+L EQ+ + DLPVIMM+ G + ++ + GA +Y+LKP + +E+
Sbjct: 62 ELLEQLKQVYPDLPVIMMTAYGTVEKAVEAMKKGAFDYILKPFKNEEI 109
>gi|383935174|ref|ZP_09988611.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Rheinheimera nanhaiensis E407-8]
gi|383703590|dbj|GAB58702.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Rheinheimera nanhaiensis E407-8]
Length = 449
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 13/138 (9%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDDP LR+L L Y+V + AE AL +L +KN D+V+SD+ MP +DG
Sbjct: 7 RLLLVDDDPSLLRLLTLRLEGEGYQVISADSAEAALPLL--AKNSVDVVLSDLRMPGLDG 64
Query: 79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L +++ LPV++M+ G + + G +L KP+ ELR+I Q+ Q
Sbjct: 65 MSLFDEIAKRYPGLPVVLMTAHGSIPEAVAATQRGVFGFLTKPLNTAELRDILQNAVHQS 124
Query: 138 KPFEESDDSYSVNQGNWR 155
P Q WR
Sbjct: 125 VP----------EQAEWR 132
>gi|282890755|ref|ZP_06299275.1| hypothetical protein pah_c026o086 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175721|ref|YP_004652531.1| hypothetical protein PUV_17270 [Parachlamydia acanthamoebae UV-7]
gi|281499348|gb|EFB41647.1| hypothetical protein pah_c026o086 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480079|emb|CCB86677.1| putative uncharacterized protein [Parachlamydia acanthamoebae UV-7]
Length = 410
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 84/151 (55%), Gaps = 16/151 (10%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDD P+ +L ++L + Y+V AL+ L+ K + +VI+DV+MP MDGF
Sbjct: 9 ILVVDDTPLQAIMLRRVLVQANYDVLTAKNGAEALEFLK--KQKFALVITDVNMPIMDGF 66
Query: 80 KLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKP-------IRIKELRNI 129
KL + +++L PVI+ +V +D++KG+ GA NY+ KP +RIKEL
Sbjct: 67 KLCRIIKTDLNLRSTPVIICTVLASPEDLIKGIEAGADNYITKPWNNDLLLLRIKELVG- 125
Query: 130 WQHVAQQPKPFEESDDSYSVNQGNWRTSNRR 160
+ P+ F +++ NQ ++NR+
Sbjct: 126 ---RSSSPQIFSSTEEIVFGNQTYKISTNRQ 153
>gi|15596126|ref|NP_249620.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
gi|107100385|ref|ZP_01364303.1| hypothetical protein PaerPA_01001410 [Pseudomonas aeruginosa PACS2]
gi|218893102|ref|YP_002441971.1| two-component response regulator [Pseudomonas aeruginosa LESB58]
gi|254245213|ref|ZP_04938535.1| two-component response regulator [Pseudomonas aeruginosa 2192]
gi|386060171|ref|YP_005976693.1| two-component response regulator [Pseudomonas aeruginosa M18]
gi|416858721|ref|ZP_11913490.1| two-component response regulator [Pseudomonas aeruginosa 138244]
gi|418583608|ref|ZP_13147677.1| two-component response regulator [Pseudomonas aeruginosa MPAO1/P1]
gi|418588973|ref|ZP_13152903.1| two-component response regulator [Pseudomonas aeruginosa MPAO1/P2]
gi|420141153|ref|ZP_14648859.1| two-component response regulator [Pseudomonas aeruginosa CIG1]
gi|421155574|ref|ZP_15615049.1| two-component response regulator [Pseudomonas aeruginosa ATCC
14886]
gi|421162460|ref|ZP_15621302.1| two-component response regulator [Pseudomonas aeruginosa ATCC
25324]
gi|421182073|ref|ZP_15639558.1| two-component response regulator [Pseudomonas aeruginosa E2]
gi|421515551|ref|ZP_15962237.1| two-component response regulator [Pseudomonas aeruginosa PAO579]
gi|9946833|gb|AAG04318.1|AE004527_5 two-component response regulator [Pseudomonas aeruginosa PAO1]
gi|126198591|gb|EAZ62654.1| two-component response regulator [Pseudomonas aeruginosa 2192]
gi|218773330|emb|CAW29142.1| two-component response regulator [Pseudomonas aeruginosa LESB58]
gi|334839206|gb|EGM17899.1| two-component response regulator [Pseudomonas aeruginosa 138244]
gi|347306477|gb|AEO76591.1| two-component response regulator [Pseudomonas aeruginosa M18]
gi|375047216|gb|EHS39765.1| two-component response regulator [Pseudomonas aeruginosa MPAO1/P1]
gi|375052132|gb|EHS44591.1| two-component response regulator [Pseudomonas aeruginosa MPAO1/P2]
gi|403246077|gb|EJY59827.1| two-component response regulator [Pseudomonas aeruginosa CIG1]
gi|404349279|gb|EJZ75616.1| two-component response regulator [Pseudomonas aeruginosa PAO579]
gi|404520271|gb|EKA30951.1| two-component response regulator [Pseudomonas aeruginosa ATCC
14886]
gi|404534540|gb|EKA44272.1| two-component response regulator [Pseudomonas aeruginosa ATCC
25324]
gi|404542793|gb|EKA52102.1| two-component response regulator [Pseudomonas aeruginosa E2]
gi|453047954|gb|EME95667.1| two-component response regulator [Pseudomonas aeruginosa
PA21_ST175]
Length = 239
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L ++DDP L + L +EVT C E L R GYD+++ D+ +P DG
Sbjct: 10 RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAAR--SGGYDLILMDIMLPGRDG 67
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++ Q+ E LPVI+MS G QD + G + GA +YL KP + ELR
Sbjct: 68 LEILRQLRQEQALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELR 116
>gi|443302655|gb|AGC82269.1| cAMP phosphodiesterase [Acanthamoeba castellanii]
Length = 621
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 10/136 (7%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLY---EVTKCNRAEIALDMLRMSKNGYDIVISDV 71
P +++LVVDD+P ++ K+L K Y EV + R I L + +++V+ D+
Sbjct: 9 PKEIKILVVDDEPTARIVVRKLLEKTGYTEVEVVESGRKAIEL----IENRSFNLVLCDL 64
Query: 72 HMPDMDGFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
HMPD+DG + + V + D P++MMS V K ++ GA +YLLKPI+ ++N
Sbjct: 65 HMPDIDGIGVVKAVRKKAHMDDSPIVMMSATEDLNIVYKCLSEGADDYLLKPIQANAVKN 124
Query: 129 IWQHVAQQPKPFEESD 144
+WQ+V ++ K E ++
Sbjct: 125 LWQNVWRKRKEKETAN 140
>gi|449524812|ref|XP_004169415.1| PREDICTED: two-component response regulator-like APRR7-like
[Cucumis sativus]
Length = 794
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D ++ +LR C YEV A ML N D+V+++V MP +
Sbjct: 89 LKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCLS 148
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 149 GIGLLCKIMNHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 207
>gi|49082112|gb|AAT50456.1| PA0929, partial [synthetic construct]
Length = 240
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L ++DDP L + L +EVT C E L R GYD+++ D+ +P DG
Sbjct: 10 RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAAR--SGGYDLILMDIMLPGRDG 67
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++ Q+ E LPVI+MS G QD + G + GA +YL KP + ELR
Sbjct: 68 LEILRQLRQEQALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELR 116
>gi|226315460|ref|YP_002775356.1| two-component hybrid sensor and regulator [Brevibacillus brevis
NBRC 100599]
gi|226098410|dbj|BAH46852.1| two-component hybrid sensor and regulator [Brevibacillus brevis
NBRC 100599]
Length = 1024
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 7/113 (6%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R++VVDDD I L IL KML YEV+ A+ AL +L +N D+VISDV MP + G
Sbjct: 698 RIIVVDDDSINLNILSKMLESDQYEVSTATSAQQALSILE--RNPVDLVISDVMMPHVSG 755
Query: 79 FKL----HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++L E+ + ++LPV++++ ++D++ G GA +Y+ KP+ EL+
Sbjct: 756 YELTRIIRERFSV-LELPVLLLTARSRSEDIIAGFQAGANDYVKKPVDAWELK 807
>gi|226310343|ref|YP_002770237.1| two-component hybrid sensor and regulator [Brevibacillus brevis
NBRC 100599]
gi|226093291|dbj|BAH41733.1| two-component hybrid sensor and regulator [Brevibacillus brevis
NBRC 100599]
Length = 1067
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 70/115 (60%), Gaps = 6/115 (5%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L +DDDP+ LR+L++ML Y++T C ALD+L + +D++I DV MP M G+
Sbjct: 732 ILAIDDDPVNLRVLDRMLSSSHYQITTCASPRDALDLLFTEQ--WDLLIIDVMMPHMSGY 789
Query: 80 KLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR-NIW 130
+L ++V +LP+++++ ++DV G GA +Y+ KP+ EL+ +W
Sbjct: 790 ELTQRVREHFSVSELPILLLTARSQSEDVYTGYLSGANDYVCKPVDGMELKYRVW 844
>gi|255582079|ref|XP_002531836.1| sensory transduction histidine kinase, putative [Ricinus communis]
gi|223528532|gb|EEF30556.1| sensory transduction histidine kinase, putative [Ricinus communis]
Length = 807
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D ++ +LR C YEV A +L N D+V+++V MP +
Sbjct: 74 LKVLLVENDDSTRHVVSALLRNCSYEVNAVANGFQAWKILEDMNNHTDLVLTEVVMPILS 133
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
G L H+ + ++PVIMMS V K ++ GA ++L+KPIR EL+N+WQ
Sbjct: 134 GIGLLCKIRNHKTL---RNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRKNELKNLWQ 190
Query: 132 HV 133
HV
Sbjct: 191 HV 192
>gi|365093258|ref|ZP_09330325.1| putative two component, sigma54 specific, transcriptional regulator
[Acidovorax sp. NO-1]
gi|363414641|gb|EHL21789.1| putative two component, sigma54 specific, transcriptional regulator
[Acidovorax sp. NO-1]
Length = 471
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 77/156 (49%), Gaps = 14/156 (8%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDDDP LR+L L+ Y+V AE AL L M++ +V+SDV +P DG
Sbjct: 15 RILVVDDDPDMLRLLSLRLQAAGYDVVAVGSAEAALAQLDMARP--QLVLSDVRLPGRDG 72
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE-LRNIWQHVAQQ 136
L ++V LPVI+++ G D ++ + G YL KP KE L I Q +A
Sbjct: 73 LALFDEVRSRHPSLPVILLTAHGTIPDAVEATSRGVFTYLTKPYDGKELLEKIAQALALG 132
Query: 137 PKPFEESDDSYSVNQGNWRT-----SNRRKDEEEEA 167
E++ + + WR SNR D EA
Sbjct: 133 APAVEQAHANEA-----WRADIVSRSNRMTDLLAEA 163
>gi|218192572|gb|EEC74999.1| hypothetical protein OsI_11061 [Oryza sativa Indica Group]
Length = 780
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 16/132 (12%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTK--CNR--------AEIALDM---LRMSKNGY 64
LRVL+V++D +++ +LRKC YE ++ C AE L L +N
Sbjct: 81 LRVLLVENDDSTRQVVSALLRKCCYEDSRGFCASRFPSAVIPAENGLHAWQCLEDLQNHI 140
Query: 65 DIVISDVHMPDMDGFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
D+V+++V MP + G L ++ D+PVIMMS + V K ++ GA ++L+KPI
Sbjct: 141 DLVLTEVVMPRLSGIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPI 200
Query: 122 RIKELRNIWQHV 133
R EL+N+WQHV
Sbjct: 201 RKNELKNLWQHV 212
>gi|297810367|ref|XP_002873067.1| pseudo-response regulator 7 [Arabidopsis lyrata subsp. lyrata]
gi|297318904|gb|EFH49326.1| pseudo-response regulator 7 [Arabidopsis lyrata subsp. lyrata]
Length = 733
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+V++D I+ +LR C YEV + + A +L N DIV+++V MP +
Sbjct: 85 IRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLS 144
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS V K ++ GA ++L+KPIR EL+ +WQHV
Sbjct: 145 GISLLSKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHV 203
>gi|224098134|ref|XP_002311124.1| predicted protein [Populus trichocarpa]
gi|222850944|gb|EEE88491.1| predicted protein [Populus trichocarpa]
Length = 711
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D ++ +LR C YEVT + A +L+ N D+V+++V MP +
Sbjct: 37 LKVLLVENDDSTRHVVSALLRNCGYEVTAVSNGLQAWKVLQDLTNHIDLVLTEVAMPCLS 96
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS V K ++ GA ++L+KPIR EL+ +WQHV
Sbjct: 97 GIGLLSKIMSHKTCRNIPVIMMSSHDSMNVVFKCLSKGAVDFLVKPIRKNELKILWQHV 155
>gi|421499169|ref|ZP_15946226.1| two-component system response regulator [Aeromonas media WS]
gi|407181832|gb|EKE55832.1| two-component system response regulator [Aeromonas media WS]
Length = 426
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD L+++ LR YEV + AE ALD LR + D+V+SD+ M MDG
Sbjct: 3 RILLVDDDASLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRA--DLVLSDLRMGGMDG 60
Query: 79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L E++ + + +PVI+M+ G D ++ G ++L KPI EL +H
Sbjct: 61 LALFERIQSQWLGMPVIIMTAHGTIPDAIQATRSGVFSFLTKPIDKDELLVTIEHALSLT 120
Query: 138 KPFEESD 144
+P ++ +
Sbjct: 121 RPKQQHE 127
>gi|224098126|ref|XP_002311123.1| pseudo response regulator [Populus trichocarpa]
gi|222850943|gb|EEE88490.1| pseudo response regulator [Populus trichocarpa]
Length = 766
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D ++ +LR C YEVT + A +L+ N D+V+++V MP +
Sbjct: 92 LKVLLVENDDSTRHVVSALLRNCGYEVTAVSNGLQAWKVLQDLTNHIDLVLTEVAMPCLS 151
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS V K ++ GA ++L+KPIR EL+ +WQHV
Sbjct: 152 GIGLLSKIMSHKTCRNIPVIMMSSHDSMNVVFKCLSKGAVDFLVKPIRKNELKILWQHV 210
>gi|332307083|ref|YP_004434934.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Glaciecola sp. 4H-3-7+YE-5]
gi|410639389|ref|ZP_11349937.1| transcriptional regulatory protein zraR [Glaciecola chathamensis
S18K6]
gi|410645394|ref|ZP_11355857.1| transcriptional regulatory protein zraR [Glaciecola agarilytica
NO2]
gi|332174412|gb|AEE23666.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Glaciecola sp. 4H-3-7+YE-5]
gi|410134905|dbj|GAC04256.1| transcriptional regulatory protein zraR [Glaciecola agarilytica
NO2]
gi|410140980|dbj|GAC08124.1| transcriptional regulatory protein zraR [Glaciecola chathamensis
S18K6]
Length = 449
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 12/138 (8%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDDD LR++ L Y V + AL + M+ +D V+SD+ MP +DG
Sbjct: 11 QILLVDDDESLLRLMAIRLEGEGYSVQSAEGGKEALRL--MNTQNFDAVLSDLRMPGLDG 68
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L E++ L DLPVI+M+ G QD ++ G +L KPI ELR++ Q
Sbjct: 69 LSLFEEIMSLGKDLPVILMTAHGTIQDAVEATQRGVFGFLTKPIDHTELRDLLAKAVSQ- 127
Query: 138 KPFEESDDSYSVNQGNWR 155
S G WR
Sbjct: 128 --------SQGSQAGAWR 137
>gi|334706228|ref|ZP_08522094.1| two-component system response regulator [Aeromonas caviae Ae398]
Length = 426
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD L+++ LR YEV + AE ALD LR + D+V+SD+ M MDG
Sbjct: 3 RILLVDDDASLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQR--ADLVLSDLRMGGMDG 60
Query: 79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L E++ + + +PVI+M+ G D ++ G ++L KPI EL +H
Sbjct: 61 LALFERIQSQWLGMPVIIMTAHGTIPDAIQATRSGVFSFLTKPIDKDELLVTIEHALSLT 120
Query: 138 KPFEESD 144
+P ++ +
Sbjct: 121 RPKQQQE 127
>gi|224120142|ref|XP_002318255.1| predicted protein [Populus trichocarpa]
gi|222858928|gb|EEE96475.1| predicted protein [Populus trichocarpa]
Length = 623
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 28/156 (17%)
Query: 53 ALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHG 112
AL +LR+ K +D+V+SD+HMP+M+G +L +QV E LPVI+MS D + + + G
Sbjct: 25 ALSILRLKKGLFDLVVSDLHMPEMNGMELQKQVEEEFKLPVIIMSSDESKNVISRSLEGG 84
Query: 113 ACNYLLKPIRIKELRNIWQHV----------------AQQPK---------PFEESDDSY 147
A Y++KP +L+N+W + +++P E+ + +
Sbjct: 85 AAFYIVKPANKVDLKNVWHYAVAIKTGNSLSIKEIEGSREPSYSSTLVERLSLEDVNSAT 144
Query: 148 SVNQGNWRTSNRRKDEEEEA---EKRDDTSTLKKPR 180
S+N N RK+E + ++ D KKP+
Sbjct: 145 SINDEKRYRKNGRKEERKSTKDDQEVDSQPASKKPK 180
>gi|410628438|ref|ZP_11339157.1| transcriptional regulatory protein zraR [Glaciecola mesophila KMM
241]
gi|410151914|dbj|GAC25926.1| transcriptional regulatory protein zraR [Glaciecola mesophila KMM
241]
Length = 449
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 12/138 (8%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDDD LR++ L Y V + AL + M+ +D V+SD+ MP +DG
Sbjct: 11 QILLVDDDESLLRLMAIRLEGEGYSVQSAEGGKEALRL--MNTQNFDAVLSDLRMPGLDG 68
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L E++ L DLPVI+M+ G QD ++ G +L KPI ELR++ Q
Sbjct: 69 LSLFEEIMSLGKDLPVILMTAHGTIQDAVEATQRGVFGFLTKPIDHTELRDLLAKAVSQ- 127
Query: 138 KPFEESDDSYSVNQGNWR 155
S G WR
Sbjct: 128 --------SQGSQTGAWR 137
>gi|157399678|gb|ABV53463.1| pseudo-response regulator 7 [Castanea sativa]
Length = 784
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D ++ +LR C YEVT A +L D+V+++V MP +
Sbjct: 98 LKVLLVENDDSTRHVVSALLRNCGYEVTAAENGLQAWKILEDYTTHVDLVLTEVVMPCLS 157
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS V K ++ GA ++L KPIR EL+N+WQHV
Sbjct: 158 GIGLLSKIMSHKTCKNIPVIMMSSYDSMNIVFKCLSKGAVDFLAKPIRKNELKNLWQHV 216
>gi|86158253|ref|YP_465038.1| response regulator receiver (CheY-like) modulated metal dependent
phosphohydrolase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774764|gb|ABC81601.1| response regulator receiver (CheY-like) modulated metal dependent
phosphohydrolase [Anaeromyxobacter dehalogenans 2CP-C]
Length = 357
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 13/156 (8%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P R+L+VDDD ++ +LR+ Y T AE ALD R K Y +VISDV MP
Sbjct: 6 PEATRILIVDDDAAVRDVITVLLREEGYVCTTVASAEAALDEAR--KTDYPLVISDVRMP 63
Query: 75 DMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL-RNIWQH 132
DGF L EQ+ D VIM++ G T+ ++ + +GA +YLLKP ++ EL R I +
Sbjct: 64 ARDGFWLLEQMREASPDTAVIMLTAYGDTEAAVECLRNGAADYLLKPPKVTELIRAIERA 123
Query: 133 VAQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAE 168
+ ++ + +G +R S + +E+ AE
Sbjct: 124 LGRR---------RLELARGRYRRSLENRVKEKTAE 150
>gi|357458949|ref|XP_003599755.1| Two-component response regulator ARR1 [Medicago truncatula]
gi|357469643|ref|XP_003605106.1| Two-component response regulator ARR1 [Medicago truncatula]
gi|355488803|gb|AES70006.1| Two-component response regulator ARR1 [Medicago truncatula]
gi|355506161|gb|AES87303.1| Two-component response regulator ARR1 [Medicago truncatula]
Length = 247
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 61 KNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
K +D+++ D MP+MD + V L++ +P IMM+VD +MK + GAC Y KP
Sbjct: 36 KCCFDVMLIDARMPNMDACDFVQHVSLQLQIPAIMMAVDSTKNSIMKSIECGACEYWTKP 95
Query: 121 IRIKELRNIWQHVAQQPKPFEESDDSYSVNQGNWRTSNRRKDEEE-EAEKRDDTSTLK 177
+ K+ + +WQHVA++ P + Y++ + +NR++ E+ +A K T +
Sbjct: 96 LIEKKFKTMWQHVARKGMP---ENKEYAIVGSSMVQANRKRGREDADASKETHAKTAR 150
>gi|392403973|ref|YP_006440585.1| integral membrane sensor hybrid histidine kinase [Turneriella parva
DSM 21527]
gi|390611927|gb|AFM13079.1| integral membrane sensor hybrid histidine kinase [Turneriella parva
DSM 21527]
Length = 1054
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 76/119 (63%), Gaps = 5/119 (4%)
Query: 12 DQFPA-GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
D P GL+VL+ DD+P+ +R+L ++L + + + E AL++++ S+ +D+++ D
Sbjct: 674 DYLPTDGLQVLIADDEPVNIRLLTQVLEEIGIQPRTASDGESALELMQ-SQEKWDLILLD 732
Query: 71 VHMPDMDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
V MP M+GF++ E++ +LPVI ++ G + D++KG + GA +YL KP+ +E+
Sbjct: 733 VMMPGMNGFRVCERIRERWSATELPVIFLTARGSSTDLVKGFSLGANDYLPKPVAREEI 791
>gi|255568450|ref|XP_002525199.1| sensory transduction histidine kinase, putative [Ricinus communis]
gi|223535496|gb|EEF37165.1| sensory transduction histidine kinase, putative [Ricinus communis]
Length = 762
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
L+VL+V++D ++ +LR C YEV + A +L N D+V+++V MP
Sbjct: 86 GSLKVLLVENDYSTRHVVTALLRNCSYEVIEATNGLQAWRILEDLTNQIDLVLTEVVMPC 145
Query: 76 MDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
+ G L ++ ++PVIMMS V K ++ GA ++L+KPIR EL+N+WQH
Sbjct: 146 LSGIGLLYKIMSHKTRKNVPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 205
Query: 133 V 133
V
Sbjct: 206 V 206
>gi|89072496|ref|ZP_01159068.1| hypothetical sensory box sensor histidine kinase/response regulator
[Photobacterium sp. SKA34]
gi|89051600|gb|EAR57053.1| hypothetical sensory box sensor histidine kinase/response regulator
[Photobacterium sp. SKA34]
Length = 1132
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 7/141 (4%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P G +LVVDD+P+ L+IL LR Y V A+D+++ + D+++ D+ MP
Sbjct: 716 PEGDLILVVDDEPVNLQILNNFLRLAGYRVKTAESGHQAIDIVQQQRP--DLILLDIMMP 773
Query: 75 DMDGFK----LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
+M G++ L +Q + +LP++M+S G QD +KG GA +YL KP +EL
Sbjct: 774 EMSGYEVCTLLRKQYSI-FELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARI 832
Query: 131 QHVAQQPKPFEESDDSYSVNQ 151
Q Q K +E + ++ Q
Sbjct: 833 QAYLQASKTEQEKQRNVTLQQ 853
>gi|356536913|ref|XP_003536977.1| PREDICTED: two-component response regulator-like APRR7-like
[Glycine max]
Length = 747
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V+ D ++ +LR C YEV + A +L N D+V+++V MP +
Sbjct: 79 LKVLLVEIDDSTRHVVTALLRNCSYEVIEAANGLQAWKILEDLTNHIDLVLTEVAMPGLS 138
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PV+MMS V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 139 GIGLLYKIMGHKTRKNIPVVMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 197
>gi|197122437|ref|YP_002134388.1| response regulator receiver modulated metal dependent
phosphohydrolase [Anaeromyxobacter sp. K]
gi|220917204|ref|YP_002492508.1| response regulator receiver modulated metal dependent
phosphohydrolase [Anaeromyxobacter dehalogenans 2CP-1]
gi|196172286|gb|ACG73259.1| response regulator receiver modulated metal dependent
phosphohydrolase [Anaeromyxobacter sp. K]
gi|219955058|gb|ACL65442.1| response regulator receiver modulated metal dependent
phosphohydrolase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 357
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 13/156 (8%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P R+L+VDDD ++ +LR+ Y T AE ALD R K Y +VISDV MP
Sbjct: 6 PEATRILIVDDDAAVRDVITVLLREEGYVCTTVASAEAALDEAR--KTDYPLVISDVRMP 63
Query: 75 DMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL-RNIWQH 132
DGF L EQ+ D VIM++ G T+ ++ + +GA +YLLKP ++ EL R I +
Sbjct: 64 ARDGFWLLEQMREASPDTAVIMLTAYGDTEAAVECLRNGAADYLLKPPKVTELIRAIERA 123
Query: 133 VAQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAE 168
+ ++ + +G +R S + +E+ AE
Sbjct: 124 LGRR---------RLELARGRYRRSLENRVKEKTAE 150
>gi|46981318|gb|AAT07636.1| hypothetical protein [Oryza sativa Japonica Group]
gi|51038102|gb|AAT93905.1| hypothetical protein [Oryza sativa Japonica Group]
gi|215769096|dbj|BAH01325.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 620
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 72/127 (56%), Gaps = 8/127 (6%)
Query: 13 QFPAG-----LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY-DI 66
+ PAG L VLVVDDD +L L+ ML Y VT AE AL + + Y I
Sbjct: 13 KLPAGGFFGRLHVLVVDDDAAYLEELKLMLLLAGYAVTGKTTAEEALKEVDQNPEDYFHI 72
Query: 67 VISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
V++DVHM MDGF L ++ +PVIM S VM+ V +GAC+Y++KP+ + +
Sbjct: 73 VMTDVHMSGMDGFDLLHRI--NGRVPVIMFSEGEDVVMVMRTVMNGACDYMVKPMTSEAI 130
Query: 127 RNIWQHV 133
+ IW+HV
Sbjct: 131 KFIWKHV 137
>gi|398809056|ref|ZP_10567911.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Variovorax sp. CF313]
gi|398086350|gb|EJL76969.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Variovorax sp. CF313]
Length = 462
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 82/172 (47%), Gaps = 21/172 (12%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
G R+LVVDDDP LR+L L Y+VT AE AL L + +V+SDV +P
Sbjct: 5 GARLLVVDDDPDMLRLLSMRLSSAGYQVTAVTSAETALTQLEIEHP--QLVLSDVRLPGR 62
Query: 77 DGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN-IWQHV- 133
DG +L +++ LPVI+++ G D ++ G YL KP +EL + I Q +
Sbjct: 63 DGLQLFDEIRKRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPYDGRELLDKIAQALA 122
Query: 134 --AQQPKPFEESDDSYSVNQGNWRT-----SNRRKDEEEEAE--KRDDTSTL 176
A P + DDS WR+ SNR + EA + D S L
Sbjct: 123 LGAPATTPSKAGDDS-------WRSEIVSRSNRMAELLAEARMVAKSDASVL 167
>gi|159900549|ref|YP_001546796.1| two component transcriptional regulator [Herpetosiphon aurantiacus
DSM 785]
gi|159893588|gb|ABX06668.1| two component transcriptional regulator, winged helix family
[Herpetosiphon aurantiacus DSM 785]
Length = 248
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 79/143 (55%), Gaps = 4/143 (2%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG-YDIVISD 70
D P ++LV DDDP LR++E L Y++ + L+ L+M ++G Y +++ D
Sbjct: 13 DNNPHQRKILVADDDPAILRLVEVALSGQRYQLVTVSNG---LEALKMYRDGEYQLLLID 69
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
V MP +DGF + E++ D+P+I+++ T DV+ G GA +Y+ KP R EL+
Sbjct: 70 VMMPYIDGFTVTERIRARSDVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARV 129
Query: 131 QHVAQQPKPFEESDDSYSVNQGN 153
+ + ++ + ++ S V G+
Sbjct: 130 EAIIRRVEGYQHRKASPIVRIGD 152
>gi|109897924|ref|YP_661179.1| two component sigma-54 specific Fis family transcriptional
regulator [Pseudoalteromonas atlantica T6c]
gi|109700205|gb|ABG40125.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Pseudoalteromonas atlantica T6c]
Length = 449
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDDD LR++ L Y V + AL + M+ +D V+SD+ MP +DG
Sbjct: 11 QILLVDDDESLLRLMAIRLEGEGYSVQSAEGGKEALRL--MNTQNFDAVLSDLRMPGLDG 68
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L E++ L DLPVI+M+ G QD ++ G +L KPI ELR++ Q
Sbjct: 69 LSLFEEIMSLGKDLPVILMTAHGTIQDAVEATQRGVFGFLTKPIDHTELRDLLAKAVSQS 128
Query: 138 KPFEES 143
+ + S
Sbjct: 129 QGSQTS 134
>gi|90580619|ref|ZP_01236424.1| hypothetical sensory box sensor histidine kinase/response regulator
[Photobacterium angustum S14]
gi|90438277|gb|EAS63463.1| hypothetical sensory box sensor histidine kinase/response regulator
[Photobacterium angustum S14]
Length = 1114
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 7/141 (4%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P G +LVVDD+P+ L+IL LR Y V ALD+++ + D+++ D+ MP
Sbjct: 702 PEGDLILVVDDEPVNLQILNNFLRLAGYRVKTAESGHQALDIVQQQRP--DLILLDIMMP 759
Query: 75 DMDGFK----LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
+M G++ L +Q + +LP++M+S G QD +KG GA +YL KP +EL
Sbjct: 760 EMSGYEVCTLLRKQYSI-FELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARI 818
Query: 131 QHVAQQPKPFEESDDSYSVNQ 151
Q Q K E + S+ Q
Sbjct: 819 QAYLQASKTEHEKQKNQSLQQ 839
>gi|125552239|gb|EAY97948.1| hypothetical protein OsI_19866 [Oryza sativa Indica Group]
Length = 604
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 77/139 (55%), Gaps = 8/139 (5%)
Query: 1 MSPASSSVAVSDQFPAG-----LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALD 55
M+ + +V + PAG L VLVVDDD +L L+ ML Y VT AE AL
Sbjct: 1 MAENNGAVPPGCKLPAGGFFGRLHVLVVDDDAAYLEELKLMLLLAGYAVTGKTTAEEALK 60
Query: 56 MLRMSKNGY-DIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGAC 114
+ + Y IV++DVHM MDGF L ++ +PVIM S VM+ V +GAC
Sbjct: 61 EVDQNPEDYFHIVMTDVHMSGMDGFDLLHRINGR--VPVIMFSEGEDVVMVMRTVMNGAC 118
Query: 115 NYLLKPIRIKELRNIWQHV 133
+Y++KP+ + ++ IW+HV
Sbjct: 119 DYMVKPMTSEAIKFIWKHV 137
>gi|146161471|ref|XP_001007239.2| Protein kinase domain containing protein [Tetrahymena thermophila]
gi|146146737|gb|EAR86994.2| Protein kinase domain containing protein [Tetrahymena thermophila
SB210]
Length = 847
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 9/134 (6%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
++D+ + VLV +DD L +L C Y+VT +A D L + + DIV+
Sbjct: 1 MADRSYQSIHVLVAEDDNFQRLALIDILTLCDYQVTAVENGRLARDELLKADSNIDIVLL 60
Query: 70 DVHMPDMDGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
D++MP+MDG +L HE + +PVIMMS D + V + +GA +YL+KP+RI
Sbjct: 61 DLYMPEMDGIELLLLMQEHEHLK---RIPVIMMSFDNEQERVAYCIANGAKDYLVKPLRI 117
Query: 124 KELRNIWQHVAQQP 137
+ ++ + ++V P
Sbjct: 118 QNVKGLAKYVEYNP 131
>gi|152983865|ref|YP_001349929.1| two-component response regulator [Pseudomonas aeruginosa PA7]
gi|150959023|gb|ABR81048.1| two-component response regulator [Pseudomonas aeruginosa PA7]
Length = 239
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 4/110 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG-YDIVISDVHMPDMD 77
R+L ++DDP L + L +EVT C E + L ++NG YD+++ D+ +P D
Sbjct: 10 RLLAIEDDPTLGAHLFRHLNGSGFEVTWCRDGE---EGLAAARNGAYDLILMDIMLPGRD 66
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
G ++ Q+ E LPVI+MS G QD + G + GA +YL KP + ELR
Sbjct: 67 GLEILRQLREEQALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELR 116
>gi|51892179|ref|YP_074870.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
gi|51855868|dbj|BAD40026.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
Length = 234
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 6/128 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDDDP L+ L++ L++ YEV + AL+M R K D++I D+ +P MDG
Sbjct: 9 RILVVDDDPKILKALDQALQQEGYEVYRAEDGLQALEMARKVKP--DLMILDIMLPKMDG 66
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
F++ Q+ +P +++S G D + G GA +YL+KP R+ EL R I + A
Sbjct: 67 FEVLAQLQSTGGVPTLILSARGEEMDKVVGFNVGADDYLVKPFRLSELLLRVRAILRRTA 126
Query: 135 QQPKPFEE 142
P +E
Sbjct: 127 GAGAPVDE 134
>gi|297812633|ref|XP_002874200.1| hypothetical protein ARALYDRAFT_910487 [Arabidopsis lyrata subsp.
lyrata]
gi|297320037|gb|EFH50459.1| hypothetical protein ARALYDRAFT_910487 [Arabidopsis lyrata subsp.
lyrata]
Length = 556
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 8/121 (6%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
LRVL+V+ D +I+ +LRKC Y V A +ML+ D+++++V +P +
Sbjct: 51 ALRVLLVEADDSTRQIISALLRKCSYRVAAVPDGLKAWEMLKGKPESVDLILTEVDLPSI 110
Query: 77 DGFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
G+ L + +E D +PVI S D V K + GA +YL+KP+R ELRN+WQH
Sbjct: 111 SGYALLTLI-MEHDICKNIPVI--STDSVN-TVYKCMLKGAADYLVKPLRRNELRNLWQH 166
Query: 133 V 133
V
Sbjct: 167 V 167
>gi|319657108|gb|ADV58932.1| pseudo-response regulator 7-like protein [Beta vulgaris subsp.
vulgaris]
Length = 718
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+V++D ++ +LR C YEV + + A +L +N D+V+++V MP +
Sbjct: 84 VRVLLVENDDSTRHVVAALLRNCCYEVVEASNGLQAWKILEDIENRIDLVLTEVVMPCVS 143
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PV+MMS V K ++ GA ++L+KPIR EL+N+WQH+
Sbjct: 144 GIALLFKIMSHKSRKNVPVVMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHL 202
>gi|222631501|gb|EEE63633.1| hypothetical protein OsJ_18450 [Oryza sativa Japonica Group]
Length = 633
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 77/139 (55%), Gaps = 8/139 (5%)
Query: 1 MSPASSSVAVSDQFPAG-----LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALD 55
M+ + +V + PAG L VLVVDDD +L L+ ML Y VT AE AL
Sbjct: 1 MAENNGAVPPGCKLPAGGFFGRLHVLVVDDDAAYLEELKLMLLLAGYAVTGKTTAEEALK 60
Query: 56 MLRMSKNGY-DIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGAC 114
+ + Y IV++DVHM MDGF L ++ +PVIM S VM+ V +GAC
Sbjct: 61 EVDQNPEDYFHIVMTDVHMSGMDGFDLLHRI--NGRVPVIMFSEGEDVVMVMRTVMNGAC 118
Query: 115 NYLLKPIRIKELRNIWQHV 133
+Y++KP+ + ++ IW+HV
Sbjct: 119 DYMVKPMTSEAIKFIWKHV 137
>gi|398814194|ref|ZP_10572876.1| histidine kinase,Response regulator receiver domain protein,
partial [Brevibacillus sp. BC25]
gi|398036954|gb|EJL30160.1| histidine kinase,Response regulator receiver domain protein,
partial [Brevibacillus sp. BC25]
Length = 503
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 69/115 (60%), Gaps = 6/115 (5%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L +DDDP+ L +L++ML Y++T C ALD+L + +D++I DV MP M G+
Sbjct: 168 ILAIDDDPVNLMVLDRMLSSSQYQITTCTSPRDALDLLFTEQ--WDLLIIDVMMPHMSGY 225
Query: 80 KLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR-NIW 130
+L ++V +LP+++++ ++DV G GA +Y+ KP+ EL+ +W
Sbjct: 226 ELTQRVREHFSVSELPILLLTARSQSEDVYTGYLSGANDYVCKPVDGMELKYRVW 280
>gi|410613157|ref|ZP_11324225.1| transcriptional regulatory protein zraR [Glaciecola psychrophila
170]
gi|410167299|dbj|GAC38114.1| transcriptional regulatory protein zraR [Glaciecola psychrophila
170]
Length = 448
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 12/136 (8%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
VL+VDDD LR++ L+ Y V + AL ++ + +D+V+SD+ MP +DG
Sbjct: 11 VLLVDDDESLLRLMAIRLKGEGYNVQSAGGGKEALRLI--NTQNFDVVLSDLRMPGLDGL 68
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
L E++ L D+PVI+M+ G QD ++ G +L KPI ELR++ + Q
Sbjct: 69 NLFEEIMALGKDVPVILMTAHGTIQDAVEATQRGVFGFLTKPIDHDELRSLMKKAVSQ-- 126
Query: 139 PFEESDDSYSVNQGNW 154
S G W
Sbjct: 127 -------SQGAQNGQW 135
>gi|225439773|ref|XP_002275837.1| PREDICTED: two-component response regulator-like APRR7 [Vitis
vinifera]
gi|297741496|emb|CBI32628.3| unnamed protein product [Vitis vinifera]
Length = 211
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVL+V++D ++ +LR C Y+VT+ + A +L+ + N D+V+++V++P + G
Sbjct: 59 RVLLVENDDSTRYVIGALLRNCGYQVTETSNGLQAWRILKDTSNHIDLVLTEVNLPRLSG 118
Query: 79 FKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
L ++ ++PVIMMS V+K ++ GA ++L+KP+R EL+ +WQH+
Sbjct: 119 IALLCKIMNHKTRKNIPVIMMSTHDSGALVLKCLSKGATDFLVKPVRKNELKFLWQHI 176
>gi|313105813|ref|ZP_07792076.1| two-component response regulator [Pseudomonas aeruginosa 39016]
gi|386064654|ref|YP_005979958.1| two-component response regulator [Pseudomonas aeruginosa NCGM2.S1]
gi|424940012|ref|ZP_18355775.1| two-component response regulator [Pseudomonas aeruginosa NCMG1179]
gi|310878578|gb|EFQ37172.1| two-component response regulator [Pseudomonas aeruginosa 39016]
gi|346056458|dbj|GAA16341.1| two-component response regulator [Pseudomonas aeruginosa NCMG1179]
gi|348033213|dbj|BAK88573.1| two-component response regulator [Pseudomonas aeruginosa NCGM2.S1]
Length = 253
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L ++DDP L + L +EVT C E L R YD+++ D+ +P DG
Sbjct: 24 RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAAR--SGAYDLILMDIMLPGRDG 81
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++ Q+ E LPVI+MS G QD + G + GA +YL KP + ELR
Sbjct: 82 LEILRQLRQEQALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELR 130
>gi|334188508|ref|NP_001190575.1| two-component response regulator-like APRR3 [Arabidopsis thaliana]
gi|332009895|gb|AED97278.1| two-component response regulator-like APRR3 [Arabidopsis thaliana]
Length = 522
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D I+ +L+ C YEVT A +L K+ D+V+++V MP
Sbjct: 64 LKVLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWRILEDEKSCIDLVLTEVDMPVHS 123
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS V K +++GA ++L+KPIR EL+N+WQHV
Sbjct: 124 GTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLVKPIRKNELKNLWQHV 182
>gi|116750532|ref|YP_847219.1| two component sigma54 specific Fis family transcriptional regulator
[Syntrophobacter fumaroxidans MPOB]
gi|116699596|gb|ABK18784.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Syntrophobacter fumaroxidans MPOB]
Length = 458
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 3/136 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDDD L ++E L + V K + ALD+L+ D+VI+DV MP M G
Sbjct: 7 ILVVDDDLHILEVIEARLSSMDFRVLKATSGQEALDLLK--AGAVDLVITDVRMPGMGGM 64
Query: 80 KL-HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
L HE LPVI ++ G D +K V GA +YL KP ++L + + ++P
Sbjct: 65 DLFHEIQTFHAGLPVIFLTAYGTISDAVKAVKAGAVDYLTKPFDGRDLVLKVKEILRKPV 124
Query: 139 PFEESDDSYSVNQGNW 154
P + ++ S W
Sbjct: 125 PHLPAQETISPKHEFW 140
>gi|356545957|ref|XP_003541399.1| PREDICTED: two-component response regulator-like APRR7-like
[Glycine max]
Length = 749
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V+ D ++ +LR C YEV A +L N D+++++V MP +
Sbjct: 81 LKVLLVEYDDSTRHVVTALLRNCSYEVIDAANGLQAWKILEDLTNHIDLILTEVAMPGLS 140
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PV+MMS V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 141 GIGLLYKIMGHKTRKNIPVVMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 199
>gi|388567607|ref|ZP_10154038.1| two sigma54 transcriptional regulator [Hydrogenophaga sp. PBC]
gi|388265212|gb|EIK90771.1| two sigma54 transcriptional regulator [Hydrogenophaga sp. PBC]
Length = 469
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDDDP LR+L L Y+VT AE AL L + + +V+SDV +P DG
Sbjct: 10 RILVVDDDPDMLRLLSMRLGSAGYQVTAVGSAEAALAQLEIERP--QLVLSDVRLPGRDG 67
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L +V LPVI+++ G D + G YL KP KEL
Sbjct: 68 LALFAEVRARHPSLPVILLTAHGTIPDAVDATARGVFGYLTKPYEAKEL 116
>gi|18424319|ref|NP_568919.1| two-component response regulator-like APRR3 [Arabidopsis thaliana]
gi|334188506|ref|NP_001190574.1| two-component response regulator-like APRR3 [Arabidopsis thaliana]
gi|52783244|sp|Q9LVG4.1|APRR3_ARATH RecName: Full=Two-component response regulator-like APRR3; AltName:
Full=Pseudo-response regulator 3
gi|8777349|dbj|BAA96939.1| unnamed protein product [Arabidopsis thaliana]
gi|10281008|dbj|BAB13744.1| pseudo-response regulator 3 [Arabidopsis thaliana]
gi|225879138|dbj|BAH30639.1| hypothetical protein [Arabidopsis thaliana]
gi|332009893|gb|AED97276.1| two-component response regulator-like APRR3 [Arabidopsis thaliana]
gi|332009894|gb|AED97277.1| two-component response regulator-like APRR3 [Arabidopsis thaliana]
Length = 495
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D I+ +L+ C YEVT A +L K+ D+V+++V MP
Sbjct: 64 LKVLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWRILEDEKSCIDLVLTEVDMPVHS 123
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS V K +++GA ++L+KPIR EL+N+WQHV
Sbjct: 124 GTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLVKPIRKNELKNLWQHV 182
>gi|67005935|gb|AAY62604.1| pseudo response regulator 3 [Arabidopsis thaliana]
Length = 495
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D I+ +L+ C YEVT A +L K+ D+V+++V MP
Sbjct: 64 LKVLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWRILEDEKSCIDLVLTEVDMPVHS 123
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS V K +++GA ++L+KPIR EL+N+WQHV
Sbjct: 124 GTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLVKPIRKNELKNLWQHV 182
>gi|297539092|ref|YP_003674861.1| Fis family two component sigma54 specific transcriptional regulator
[Methylotenera versatilis 301]
gi|297258439|gb|ADI30284.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Methylotenera versatilis 301]
Length = 456
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L VDD+P R+LE LR+ Y+ + AL +LR + D+V+SD+HMP MDG
Sbjct: 6 RILAVDDEPHMRRLLEISLRQAGYQPVVAENGKEALTILR--NDNIDLVVSDLHMPVMDG 63
Query: 79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
KL E + E +D PVI+++ G ++ + GA +Y+L+P ++ L
Sbjct: 64 LKLLEALRAENIDTPVIIVTAQGEISSAVQAMKLGASDYILRPFDLETL 112
>gi|18414032|ref|NP_568107.1| two-component response regulator-like APRR7 [Arabidopsis thaliana]
gi|52783235|sp|Q93WK5.1|APRR7_ARATH RecName: Full=Two-component response regulator-like APRR7; AltName:
Full=Pseudo-response regulator 7
gi|10281004|dbj|BAB13742.1| pseudo-response regulator 7 [Arabidopsis thaliana]
gi|14532638|gb|AAK64047.1| unknown protein [Arabidopsis thaliana]
gi|23296600|gb|AAN13129.1| unknown protein [Arabidopsis thaliana]
gi|332003137|gb|AED90520.1| two-component response regulator-like APRR7 [Arabidopsis thaliana]
Length = 727
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+V++D I+ +LR C YEV + + A +L N DIV+++V MP +
Sbjct: 78 IRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLS 137
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS V K ++ GA ++L+KPIR EL+ +WQHV
Sbjct: 138 GIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHV 196
>gi|329922247|ref|ZP_08277949.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF5]
gi|328942284|gb|EGG38554.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF5]
Length = 1049
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 5 SSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY 64
+ S A++ P+ R+L+VDDDP+ L+++ +L Y + RAE AL +L + +
Sbjct: 706 AESEALALARPSDGRLLIVDDDPVNLKVIHHLLADEGYRIVAVTRAEEALQLLEQGE--W 763
Query: 65 DIVISDVHMPDMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
D++ISDV MP M G++L + + +LP+++++ +D+ G GA +YL+KP+
Sbjct: 764 DLIISDVMMPQMSGYELSRTIRQRYMLSELPILLLTARNRPEDIHMGFISGANDYLIKPV 823
Query: 122 RIKELRN 128
EL+
Sbjct: 824 DHLELKT 830
>gi|302813242|ref|XP_002988307.1| hypothetical protein SELMODRAFT_447266 [Selaginella moellendorffii]
gi|300144039|gb|EFJ10726.1| hypothetical protein SELMODRAFT_447266 [Selaginella moellendorffii]
Length = 508
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 73/119 (61%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D D + ++++L +C Y+V+ A +++L ++ + D+V+S+V +P+
Sbjct: 14 VRILLCDKDSATAQEVKELLCRCSYQVSVVKTARQVVEVLNITDSKVDLVLSEVELPNGR 73
Query: 78 GFKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + + +P++MMS V+K + GA +YL+KP+RI EL N+W H+
Sbjct: 74 GFKMLKHIVKSENFKHIPIVMMSARDEMAVVVKCLKLGAADYLVKPLRINELLNLWTHM 132
>gi|261408948|ref|YP_003245189.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
Y412MC10]
gi|261285411|gb|ACX67382.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
Y412MC10]
Length = 1049
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
Query: 5 SSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY 64
+ S A++ P+ R+L+VDDDP+ L+++ +L Y + RAE AL +L + +
Sbjct: 706 AESEALALARPSDGRLLIVDDDPVNLKVIHHLLADEGYRIVTVTRAEEALQLLEQGE--W 763
Query: 65 DIVISDVHMPDMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
D++ISDV MP M G++L + + +LP+++++ +D+ G GA +YL+KP+
Sbjct: 764 DLIISDVMMPQMSGYELSRTIRQRYMLSELPILLLTARNRPEDIHMGFISGANDYLIKPV 823
Query: 122 RIKELRN 128
EL+
Sbjct: 824 DHLELKT 830
>gi|116048852|ref|YP_792347.1| two-component response regulator [Pseudomonas aeruginosa
UCBPP-PA14]
gi|296390718|ref|ZP_06880193.1| two-component response regulator [Pseudomonas aeruginosa PAb1]
gi|392985594|ref|YP_006484181.1| two-component response regulator [Pseudomonas aeruginosa DK2]
gi|416875650|ref|ZP_11918808.1| two-component response regulator [Pseudomonas aeruginosa 152504]
gi|419753892|ref|ZP_14280290.1| two-component response regulator [Pseudomonas aeruginosa
PADK2_CF510]
gi|421169702|ref|ZP_15627709.1| two-component response regulator [Pseudomonas aeruginosa ATCC
700888]
gi|421176073|ref|ZP_15633742.1| two-component response regulator [Pseudomonas aeruginosa CI27]
gi|451987424|ref|ZP_21935582.1| Two-component response regulator PfeR,enterobactin [Pseudomonas
aeruginosa 18A]
gi|115584073|gb|ABJ10088.1| two-component response regulator [Pseudomonas aeruginosa
UCBPP-PA14]
gi|334841749|gb|EGM20371.1| two-component response regulator [Pseudomonas aeruginosa 152504]
gi|384399831|gb|EIE46196.1| two-component response regulator [Pseudomonas aeruginosa
PADK2_CF510]
gi|392321099|gb|AFM66479.1| two-component response regulator [Pseudomonas aeruginosa DK2]
gi|404525841|gb|EKA36089.1| two-component response regulator [Pseudomonas aeruginosa ATCC
700888]
gi|404531424|gb|EKA41379.1| two-component response regulator [Pseudomonas aeruginosa CI27]
gi|451755042|emb|CCQ88105.1| Two-component response regulator PfeR,enterobactin [Pseudomonas
aeruginosa 18A]
Length = 239
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L ++DDP L + L +EVT C E L R YD+++ D+ +P DG
Sbjct: 10 RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAAR--SGAYDLILMDIMLPGRDG 67
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++ Q+ E LPVI+MS G QD + G + GA +YL KP + ELR
Sbjct: 68 LEILRQLRQEQALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELR 116
>gi|452972816|gb|EME72643.1| two-component response regulator [Bacillus sonorensis L12]
Length = 222
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 4/122 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L VDDD LR++ KML +EVT + D+ N Y++++ DV MPD DG
Sbjct: 3 KILAVDDDAAILRLVRKMLSIKKHEVTTLQSIK---DITIEELNKYNLILLDVMMPDEDG 59
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR-NIWQHVAQQP 137
FK+ E++ +D+P+I M+ ++KG++ G +Y++KP I E+ I H+ ++
Sbjct: 60 FKICEKIRSLIDIPIIFMTAKSDESSIIKGLSIGGDDYIVKPFSIHEVNARIEAHLRREA 119
Query: 138 KP 139
+P
Sbjct: 120 RP 121
>gi|254239280|ref|ZP_04932603.1| two-component response regulator [Pseudomonas aeruginosa C3719]
gi|126171211|gb|EAZ56722.1| two-component response regulator [Pseudomonas aeruginosa C3719]
Length = 239
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L ++DDP L + L +EVT C E L R YD+++ D+ +P DG
Sbjct: 10 RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAAR--SGAYDLILMDIMLPGRDG 67
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++ Q+ E LPVI+MS G QD + G + GA +YL KP + ELR
Sbjct: 68 LEILRQLRQEQALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELR 116
>gi|302760961|ref|XP_002963903.1| hypothetical protein SELMODRAFT_438647 [Selaginella moellendorffii]
gi|300169171|gb|EFJ35774.1| hypothetical protein SELMODRAFT_438647 [Selaginella moellendorffii]
Length = 505
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 73/119 (61%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D D + ++++L +C Y+V+ A +++L ++ + D+V+S+V +P+
Sbjct: 14 VRILLCDKDSATAQEVKELLCRCSYQVSVVKTARQVVEVLNITDSKVDLVLSEVELPNGR 73
Query: 78 GFKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + + +P++MMS V+K + GA +YL+KP+RI EL N+W H+
Sbjct: 74 GFKMLKHIVKSENFKHIPIVMMSARDEMAVVVKCLKLGAADYLVKPLRINELLNLWTHM 132
>gi|355653051|ref|ZP_09056921.1| hypothetical protein HMPREF1030_06007 [Pseudomonas sp. 2_1_26]
gi|354823806|gb|EHF08099.1| hypothetical protein HMPREF1030_06007 [Pseudomonas sp. 2_1_26]
Length = 239
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L ++DDP L + L +EVT C E L R YD+++ D+ +P DG
Sbjct: 10 RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAAR--SGAYDLILMDIMLPGRDG 67
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++ Q+ E LPVI+MS G QD + G + GA +YL KP + ELR
Sbjct: 68 LEILRQLRQEQALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELR 116
>gi|145514664|ref|XP_001443237.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410615|emb|CAK75840.1| unnamed protein product [Paramecium tetraurelia]
Length = 819
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ VL+ +D PI L +L+ C Y+V C A D L ++N +D+++ D+ +P+M
Sbjct: 14 INVLLAEDAPIQRIALIDLLQLCNYQVVACETGIQARDELLKTENEFDLILLDLGLPEMT 73
Query: 78 GFKLHE---QVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
G +L + + D+PVIMMS D T+ V + GA +Y++KP+ K+L+ + V
Sbjct: 74 GLELLQIIKAIDKLKDVPVIMMSGDDETETVAACLNAGAEDYMVKPVNFKKLQGLQTFVK 133
Query: 135 QQPKP 139
++PKP
Sbjct: 134 KKPKP 138
>gi|67005937|gb|AAY62605.1| pseudo response regulator 3 [Arabidopsis thaliana]
Length = 495
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D I+ +L+ C YE+T A +L K+ D+V+++V MP
Sbjct: 64 LKVLLVENDDSTRHIVTALLKNCSYEITAVPDVLEAWRILEDEKSCIDLVLTEVDMPVHS 123
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS V K +++GA ++L+KPIR EL+N+WQHV
Sbjct: 124 GTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLVKPIRKNELKNLWQHV 182
>gi|77359575|ref|YP_339150.1| response regulator in two-component regulatory system
[Pseudoalteromonas haloplanktis TAC125]
gi|76874486|emb|CAI85707.1| putative response regulator in two-component regulatory system
[Pseudoalteromonas haloplanktis TAC125]
Length = 449
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P G +VL+VDDD L++L + YEVT C IAL +L+ +D V++D+ M
Sbjct: 6 PQGAKVLLVDDDASLLKLLAIRIESKGYEVTTCESGLIALQILK--SQVFDAVVTDLRMD 63
Query: 75 DMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+MDG LH Q+ LPVIMM+ G D ++ G ++ KPI EL
Sbjct: 64 EMDGMALHRQLQSRYPALPVIMMTAHGSIPDAVEATKQGIFAFITKPIDKDEL 116
>gi|86606063|ref|YP_474826.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
gi|86554605|gb|ABC99563.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
Length = 243
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 9/148 (6%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD+ RILE L Y+V E AL++ R K D+V+ DV MP +DG
Sbjct: 8 RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFR--KQDPDLVVLDVMMPKLDG 65
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + VA
Sbjct: 66 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVA 125
Query: 135 QQPKPFEESDDSYSVNQGNWRT-SNRRK 161
+ E S + G+ R +N+R+
Sbjct: 126 RS--SHEGIPSSGVIQVGDLRIDTNKRQ 151
>gi|71277923|ref|YP_270922.1| sigma-54 dependent response regulator [Colwellia psychrerythraea
34H]
gi|71143663|gb|AAZ24136.1| sigma-54 dependent response regulator [Colwellia psychrerythraea
34H]
Length = 457
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDDDP LR+L L Y+V A+IAL R+ +VISD+ M MDG
Sbjct: 14 KILIVDDDPSLLRLLGIRLSAAGYDVESAANAKIALG--RLQNFIPQVVISDLRMEGMDG 71
Query: 79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN-IWQHVAQQ 136
L EQ+ ++ ++PV++M+ G D + G ++L KP +EL + + Q + Q
Sbjct: 72 MALFEQIRIQHPNIPVVIMTAHGTIPDAINATKQGVFSFLTKPFESQELLDTVEQAIRLQ 131
Query: 137 PKPFEESDDS 146
P E++ ++
Sbjct: 132 PSQNEKTGET 141
>gi|218782909|ref|YP_002434227.1| response regulator receiver protein [Desulfatibacillum alkenivorans
AK-01]
gi|218764293|gb|ACL06759.1| Protein with response regulator receiver domain [Desulfatibacillum
alkenivorans AK-01]
Length = 444
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD+P L+ + K+L K YEV + + A+ AL+ M+K Y ++ISD+ MP+M+G
Sbjct: 6 RILVVDDEPGILQNVTKILSKAEYEVFQASSAKEALE--EMAKRSYSLLISDIVMPEMNG 63
Query: 79 FKLHEQVGLEMDLP-VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
+L + V + L V+MM+ T+ +K + GA +YL KP ELR +
Sbjct: 64 LELLKMVKNQWPLTQVLMMTAYASTETAVKAIRLGALDYLPKPFTPDELRAL 115
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDD+ + K+L+K Y V + + AL+ ++SK Y ++I D+ MP + G
Sbjct: 327 ILVVDDEVAVNNNIRKILKKGQYTVDQATTRDEALE--KVSKGFYRVIILDLKMPGVVGL 384
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135
+L E V ++ + +++++ + ++ GA Y+ KP E+R + ++
Sbjct: 385 ELLEAVHKMQPNAKIVIITGYASIETAVETSRLGAMLYVPKPFTPAEIRTAVEKASR 441
>gi|333023815|ref|ZP_08451879.1| putative two component transcriptional regulator [Streptomyces sp.
Tu6071]
gi|332743667|gb|EGJ74108.1| putative two component transcriptional regulator [Streptomyces sp.
Tu6071]
Length = 238
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 9/124 (7%)
Query: 6 SSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
+ + V D AG R+LVVDD+P L +L LR YEV + AL R + G+
Sbjct: 2 AVMTVRDDMAAGTRLLVVDDEPAILDVLATSLRFLGYEVAEATTGRAALTAAR--EGGFH 59
Query: 66 IVISDVHMPDMDGF----KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
+V+ DV +PD+DGF +L E G +PV+ ++ +D++ G+ GA +Y+ KP
Sbjct: 60 LVLLDVVLPDLDGFAVVRRLREGGG---RVPVVFLTARESPEDIVAGLDLGADDYITKPF 116
Query: 122 RIKE 125
R+ E
Sbjct: 117 RLAE 120
>gi|318041885|ref|ZP_07973841.1| two-component response regulator [Synechococcus sp. CB0101]
Length = 254
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P GL++LV DD+ RILE L +EV + AL++ R S+ D+V+ DV MP
Sbjct: 10 PEGLKILVADDEANIRRILETRLTMQGHEVLMASNGAEALELFRGSEP--DLVVLDVMMP 67
Query: 75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++DGF + E++ + ++P+I+++ G D + G+ GA +Y++KP KEL
Sbjct: 68 ELDGFAVVERIRAQSEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKEL 119
>gi|380511021|ref|ZP_09854428.1| two-component response regulator [Xanthomonas sacchari NCPPB 4393]
Length = 236
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 95/184 (51%), Gaps = 13/184 (7%)
Query: 10 VSDQFPAGLRVLVVDDDPIWL-RILEKMLRKCLYEVTKCNR-AEIALDMLRMSKNGYDIV 67
SD A LR LV++DDPI RIL LR+ + C AE+ R+ + G +IV
Sbjct: 2 TSDPAAAALRTLVLEDDPILRDRILVPGLRRFGFAADGCGTGAEL---QQRVQREGAEIV 58
Query: 68 ISDVHMPDMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI--- 123
+ DV +PD DGF L + + DL ++M++ G T+D ++G+T GA YL KP+ I
Sbjct: 59 VLDVGLPDTDGFTLAGALRQQYPDLGIVMLTSLGQTEDRIRGLTGGADAYLSKPVEIDLL 118
Query: 124 -KELRNIWQHVAQQPKPFEESDDSYSVNQGNW--RTSNRRKDEEEEAEKRDDTSTLKKPR 180
L ++ + V+ +P P + + +++ W + + +E+R L++P
Sbjct: 119 AATLHSLARRVSGRP-PAAPARGRWQMSEDGWCLLSPSGAAAALTGSERRLCLRLLEQPG 177
Query: 181 FLVS 184
LV+
Sbjct: 178 LLVA 181
>gi|312283377|dbj|BAJ34554.1| unnamed protein product [Thellungiella halophila]
Length = 728
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+V++D I+ +LR C YEV + A +L N DIV+++V MP +
Sbjct: 84 IRVLLVENDDCTRYIVTALLRNCSYEVVEVANGVQAWKVLEDLNNHIDIVLTEVVMPYLS 143
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS V K ++ GA ++L+KPIR EL+ +WQHV
Sbjct: 144 GISLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHV 202
>gi|318058835|ref|ZP_07977558.1| two component transcriptional regulator [Streptomyces sp. SA3_actG]
gi|318075696|ref|ZP_07983028.1| two component transcriptional regulator [Streptomyces sp. SA3_actF]
Length = 235
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 8 VAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIV 67
+ V D AG R+LVVDD+P L +L LR YEV + AL R + G+ +V
Sbjct: 1 MTVRDDMAAGTRLLVVDDEPAILDVLATSLRFLGYEVAEATTGRAALTAAR--EGGFHLV 58
Query: 68 ISDVHMPDMDGF----KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+ DV +PD+DGF +L E G +PV+ ++ +D++ G+ GA +Y+ KP R+
Sbjct: 59 LLDVVLPDLDGFAVVRRLREGGG---RVPVVFLTARESPEDIVAGLDLGADDYITKPFRL 115
Query: 124 KE 125
E
Sbjct: 116 AE 117
>gi|320160793|ref|YP_004174017.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
gi|319994646|dbj|BAJ63417.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
Length = 239
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
A +LVVDD+P + +L L Y V+ + E AL+++ S D+VI DV MP
Sbjct: 2 AATHILVVDDEPRYQHLLRVNLEAAGYLVSTASNGEEALELI--SSRQPDLVILDVMMPH 59
Query: 76 MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135
+DGF E++ +P+IM++ G QD +KG+ GA +Y++KP EL +A+
Sbjct: 60 LDGFSTCERIRQFSSVPIIMLTAKGEEQDRVKGLNVGADDYVVKPFSATEL------IAR 113
Query: 136 QPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAEK-RDDTSTLKKPRFL 182
+ + +V Q + T K + AE +DD KP FL
Sbjct: 114 VRAVLRRAQTAEAVTQNRYFTHGNLKIDFARAEVWKDD-----KPVFL 156
>gi|332527143|ref|ZP_08403220.1| response regulator receiver protein [Rubrivivax benzoatilyticus
JA2]
gi|332111571|gb|EGJ11553.1| response regulator receiver protein [Rubrivivax benzoatilyticus
JA2]
Length = 131
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 73/131 (55%), Gaps = 16/131 (12%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAE------IALDMLRMSKNGYDIVI 68
P+ L+ L+VDD RI+ +L++ CN A+ +AL+MLR SK YD V+
Sbjct: 3 PSDLKFLIVDDFSTMRRIVRGLLKEM-----GCNNADEAEDGVVALNMLRASK--YDFVV 55
Query: 69 SDVHMPDMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
SD++MP+M+GF+L + + G LPV+M++ + +D++ GA Y++KP
Sbjct: 56 SDINMPNMNGFELLKAIKADGSLKHLPVLMVTAEARKEDIVLAAQSGAAGYIVKPFTKAT 115
Query: 126 LRNIWQHVAQQ 136
L Q + Q+
Sbjct: 116 LEEKVQKILQK 126
>gi|258404235|ref|YP_003196977.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfohalobium retbaense DSM 5692]
gi|257796462|gb|ACV67399.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfohalobium retbaense DSM 5692]
Length = 448
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 77/140 (55%), Gaps = 10/140 (7%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L++DD+P L++L L K YEV L+ L+ + G+D++I+D+ +PD+ G
Sbjct: 6 RILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHLQ--EGGWDMLITDLKLPDITG 63
Query: 79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
+ EQV LPV+M++ G + ++ + GA NYL KP+ EL + Q+V ++
Sbjct: 64 LDILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDPDELLLLVQNVFERS 123
Query: 138 KPFEESD-------DSYSVN 150
+ EE+ D YS+
Sbjct: 124 QLLEENQTMRRQLRDRYSLG 143
>gi|239813972|ref|YP_002942882.1| two component sigma-54 specific Fis family transcriptional
regulator [Variovorax paradoxus S110]
gi|239800549|gb|ACS17616.1| putative two component, sigma54 specific, transcriptional
regulator, Fis family [Variovorax paradoxus S110]
Length = 462
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 81/172 (47%), Gaps = 21/172 (12%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
G R+LVVDDDP LR+L L Y+VT AE AL L + +V+SDV +P
Sbjct: 5 GARLLVVDDDPDMLRLLSMRLSSAGYQVTAVTSAETALTQLEIEHP--QLVLSDVRLPGR 62
Query: 77 DGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN-IWQHV- 133
DG +L +++ LPVI+++ G D ++ G YL KP +EL + I Q +
Sbjct: 63 DGLQLFDEIRKRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPYDGRELLDKIAQALA 122
Query: 134 --AQQPKPFEESDDSYSVNQGNWRT-----SNRRKDEEEEAE--KRDDTSTL 176
A P + D+S WR SNR + EA + D S L
Sbjct: 123 LGAPASTPAKAGDES-------WRAEIVSRSNRMSELLAEARMVAKSDASVL 167
>gi|224112925|ref|XP_002316333.1| pseudo response regulator [Populus trichocarpa]
gi|222865373|gb|EEF02504.1| pseudo response regulator [Populus trichocarpa]
Length = 763
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D ++ +LR C YE T A +L+ N D+V+++V MP +
Sbjct: 89 LKVLLVENDDSTRHVVSALLRNCGYEATAVANGLQAWKLLQDLTNHIDLVLTEVAMPCLS 148
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L + ++PVIMMS V + ++ GA ++L+KPIR EL+ +WQHV
Sbjct: 149 GIGLLSNIMSHKTCRNIPVIMMSSHDSMNVVFRCLSKGAVDFLVKPIRKNELKILWQHV 207
>gi|281308382|gb|ADA58339.1| pseudo-response regulator 1a [Brassica rapa]
Length = 576
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D+DP L + +L +C Y+VT A +D L DI+++++ +P
Sbjct: 21 VRILLCDNDPNSLGEVFTLLSQCSYQVTSVKSARQVIDALNAEGPDIDIILAEIDLPMAK 80
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G K+ + + DL PVIMMS V+K + GA +YL+KP+R EL N+W H+
Sbjct: 81 GMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNELLNLWTHM 139
>gi|422302664|ref|ZP_16390025.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 9806]
gi|425442909|ref|ZP_18823143.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 9717]
gi|425472686|ref|ZP_18851527.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 9701]
gi|389715919|emb|CCH99776.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 9717]
gi|389788043|emb|CCI16590.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 9806]
gi|389881212|emb|CCI38224.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 9701]
Length = 242
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L YEV E AL+ R ++ D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 124
Query: 135 QQPKP 139
+ P
Sbjct: 125 KNGAP 129
>gi|440753439|ref|ZP_20932642.1| response regulator [Microcystis aeruginosa TAIHU98]
gi|443651756|ref|ZP_21130689.1| response regulator [Microcystis aeruginosa DIANCHI905]
gi|440177932|gb|ELP57205.1| response regulator [Microcystis aeruginosa TAIHU98]
gi|443334397|gb|ELS48909.1| response regulator [Microcystis aeruginosa DIANCHI905]
Length = 242
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L YEV E AL+ R ++ D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 124
Query: 135 QQPKP 139
+ P
Sbjct: 125 KNGAP 129
>gi|398814793|ref|ZP_10573471.1| signal transduction histidine kinase [Brevibacillus sp. BC25]
gi|398035881|gb|EJL29107.1| signal transduction histidine kinase [Brevibacillus sp. BC25]
Length = 1024
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 5/112 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+++VVDDD I L IL KML YEV+ A+ AL +L + D+VISDV MP + G
Sbjct: 698 KIIVVDDDSINLNILSKMLESDQYEVSTATSAQQALSILE--RKPVDLVISDVMMPHVSG 755
Query: 79 FKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++L + ++LPV++++ +QD++ G GA +Y+ KP+ EL+
Sbjct: 756 YELTRIIRKRFSVLELPVLLLTARNRSQDIVTGFQAGANDYVKKPVDAWELK 807
>gi|374095508|sp|Q9LYP5.3|ARR21_ARATH RecName: Full=Putative two-component response regulator ARR21
Length = 613
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 71/115 (61%), Gaps = 3/115 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ V+VVDDD ++L I+ +ML+ Y V + + AL L++ ++ D++I+D +MP M+
Sbjct: 16 INVMVVDDDHVFLDIMSRMLQHSKYRVIAVDDPKKALSTLKIQRDNIDLIITDYYMPGMN 75
Query: 78 GFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
G +L +Q+ E +LPV++MS D T + ++ GA ++ KPI +L I+Q
Sbjct: 76 GLQLKKQITQEFGNLPVLVMSSD--TNKEEESLSCGAMGFIPKPIHPTDLTKIYQ 128
>gi|281308396|gb|ADA58346.1| pseudo-response regulator 7b [Brassica rapa]
Length = 704
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 8 VAVSDQFPAG-----------LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDM 56
+ +S Q PA +RVL+V++D I+ +LR C YEV + A +
Sbjct: 53 IPISQQTPATVCWERFLHVRTIRVLLVENDDCTRYIVTALLRNCSYEVVEVANGVQAWKV 112
Query: 57 LRMSKNGYDIVISDVHMPDMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGA 113
L N DIV+++V MP + G L ++ ++PVIMMS V K ++ GA
Sbjct: 113 LEDLNNHIDIVLTEVVMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGA 172
Query: 114 CNYLLKPIRIKELRNIWQHV 133
++L+KPIR EL+ +WQHV
Sbjct: 173 VDFLVKPIRKNELKILWQHV 192
>gi|56965748|ref|YP_177482.1| hypothetical protein ABC3990 [Bacillus clausii KSM-K16]
gi|56911994|dbj|BAD66521.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 610
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 75/127 (59%), Gaps = 5/127 (3%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
A++ ++S+ A R+L+VDDDP L++LE +L Y+VT + AL ML +
Sbjct: 267 ATTQTSLSELSHARPRILMVDDDPAHLQVLEGILSPEDYDVTMVTSGKEALAMLDAQE-- 324
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
+D+VISD MP + G++L + ++LPV++++ ++D+ G GA +Y+ KP
Sbjct: 325 WDLVISDTMMPQLSGYELTRLIRKRFTLIELPVLLLTSRSQSKDIQTGFLAGANDYVTKP 384
Query: 121 IRIKELR 127
++ ELR
Sbjct: 385 VKALELR 391
>gi|120609566|ref|YP_969244.1| Fis family two component sigma-54 specific transcriptional
regulator [Acidovorax citrulli AAC00-1]
gi|120588030|gb|ABM31470.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Acidovorax citrulli AAC00-1]
Length = 471
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 3 PASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN 62
PA+ S P R+LVVDDD LR+L L YE+T AE AL L S+
Sbjct: 2 PATPPTKTSAPRP---RILVVDDDADMLRLLSLRLNAAGYEITAVPSAEAALAQLETSRP 58
Query: 63 GYDIVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
+V+SDV +P DG L ++V LPVI+++ G D ++ G YL KP
Sbjct: 59 --QLVLSDVRLPGRDGLALFDEVRSRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPY 116
Query: 122 RIKELRNIWQHVAQQPKPFEESDDSYSVNQGNWRT-----SNRRKDEEEEAE--KRDDTS 174
K+L + P ++ + S WR SNR D EA + D S
Sbjct: 117 DAKDLLDKIAQALALSAPATQTPQADS----TWRAEIVSRSNRMADLLAEARMVAQSDAS 172
Query: 175 TL 176
L
Sbjct: 173 VL 174
>gi|315644507|ref|ZP_07897639.1| signal transduction histidine kinase, LytS [Paenibacillus vortex
V453]
gi|315280014|gb|EFU43311.1| signal transduction histidine kinase, LytS [Paenibacillus vortex
V453]
Length = 1031
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
S +P G VL+VDDDP+ L++L +L Y + + AL+ +R S G D+VI+D
Sbjct: 690 SRTYPKGPTVLLVDDDPVNLQVLRSLLFAENYNLLTASNGVQALEHIR-SGQGIDLVITD 748
Query: 71 VHMPDMDGFKL----HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
MP M G +L EQ L +LP++M++ +DV G+ GA ++L KP+ EL
Sbjct: 749 WMMPGMSGLQLCRTVREQHTL-FELPILMLTARSLPEDVRTGLQAGANDFLRKPVDADEL 807
Query: 127 R 127
R
Sbjct: 808 R 808
>gi|390442009|ref|ZP_10230030.1| putative transcriptional regulator ycf27 [Microcystis sp. T1-4]
gi|425435455|ref|ZP_18815906.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 9432]
gi|425444992|ref|ZP_18825032.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 9443]
gi|425450838|ref|ZP_18830661.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 7941]
gi|425456892|ref|ZP_18836598.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 9807]
gi|425459379|ref|ZP_18838865.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 9808]
gi|159027454|emb|CAO89419.1| ycf27 [Microcystis aeruginosa PCC 7806]
gi|389679979|emb|CCH91267.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 9432]
gi|389735141|emb|CCI01327.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 9443]
gi|389768144|emb|CCI06659.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 7941]
gi|389801912|emb|CCI18986.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 9807]
gi|389822920|emb|CCI29278.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 9808]
gi|389834672|emb|CCI34156.1| putative transcriptional regulator ycf27 [Microcystis sp. T1-4]
Length = 246
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L YEV E AL+ R ++ D+V+ DV MP +DG
Sbjct: 11 KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEP--DLVVLDVMMPKLDG 68
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 69 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 128
Query: 135 QQPKP 139
+ P
Sbjct: 129 KNGAP 133
>gi|242281256|ref|YP_002993385.1| response regulator receiver modulated metal dependent
phosphohydrolase [Desulfovibrio salexigens DSM 2638]
gi|242124150|gb|ACS81846.1| response regulator receiver modulated metal dependent
phosphohydrolase [Desulfovibrio salexigens DSM 2638]
Length = 352
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 77/132 (58%), Gaps = 12/132 (9%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+P + +LE +L K +EV A +AL+ L + YD+V+SDV MP M+G
Sbjct: 6 KILVVDDEPHNIMLLEGILTKLGHEVVGAENAVVALEKLDRT---YDLVLSDVMMPVMNG 62
Query: 79 FKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR----NIWQ 131
F+ E++ D+PVIM++ D +K V GA +++ KPI I ELR ++ +
Sbjct: 63 FEFVEKIRENTETQDIPVIMVTTLSQKGDRLKAVEIGANDFITKPIDIVELRVRTESMLR 122
Query: 132 HVAQQP--KPFE 141
AQQ K FE
Sbjct: 123 QKAQQDEIKSFE 134
>gi|226315436|ref|YP_002775332.1| two-component hybrid sensor and regulator [Brevibacillus brevis
NBRC 100599]
gi|226098386|dbj|BAH46828.1| two-component hybrid sensor and regulator [Brevibacillus brevis
NBRC 100599]
Length = 1050
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 14/129 (10%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDDP+ L++LE +L YEVT + AL +L + +D+VISD+ MP M G
Sbjct: 710 RLLIVDDDPVNLQVLEAILPPDEYEVTMVTSGKEALAILGTGE--WDLVISDIMMPQMSG 767
Query: 79 FKL----HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI-------RIKELR 127
++L E+ L +LPV++++ +D+ G GA +Y+ KPI RI+ L
Sbjct: 768 YELTRMIRERFTL-TELPVLLLTARSQPKDIQSGFLAGANDYVTKPIEGMEIKSRIEALT 826
Query: 128 NIWQHVAQQ 136
I Q V +Q
Sbjct: 827 TIKQSVREQ 835
>gi|379736349|ref|YP_005329855.1| Two component transcriptional regulatory protein afsQ1
[Blastococcus saxobsidens DD2]
gi|378784156|emb|CCG03824.1| Two component transcriptional regulatory protein afsQ1
[Blastococcus saxobsidens DD2]
Length = 225
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 77/123 (62%), Gaps = 5/123 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
VL+++DDP R+L+ L++ EVT+ E AL+ +++++ +D+++ D+ +P MDGF
Sbjct: 5 VLIIEDDPRIRRMLQMTLQREGLEVTEAESGEAALE--KLAEHPFDVILLDLMLPGMDGF 62
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ--- 136
++ ++ + PVIM++ + DV+ G+ GA +Y+ KP +KEL + +A++
Sbjct: 63 EVCREIRKTSNTPVIMVTARSDSHDVVAGLEAGADDYVSKPFVVKELSARIRALARRTRA 122
Query: 137 PKP 139
P+P
Sbjct: 123 PEP 125
>gi|254000327|ref|YP_003052390.1| Fis family two component sigma54 specific transcriptional regulator
[Methylovorus glucosetrophus SIP3-4]
gi|253987006|gb|ACT51863.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Methylovorus glucosetrophus SIP3-4]
Length = 457
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L +DD+P R+LE LR+ Y+ ALD+LR + G D+V+SD+HMP MDG
Sbjct: 6 RILALDDEPNMRRLLEISLRQAGYQPVVAENGREALDILR--EGGADLVVSDLHMPVMDG 63
Query: 79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+L + + E + +PVI+++ G + + GA +Y+L+P ++ L
Sbjct: 64 LQLLQAMQKEGLQVPVIIVTAQGEISTAVAAMKLGASDYILRPFDLETL 112
>gi|356540587|ref|XP_003538769.1| PREDICTED: two-component response regulator-like APRR2-like
[Glycine max]
Length = 570
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP GLRVL+++ D + + L Y+V+ AL L S G+ + I +V
Sbjct: 14 FPKGLRVLLLEGDSSSAAEIREQLEAMDYKVSTFYDENEALSALSSSPKGFHVAIVEVST 73
Query: 74 P-DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
+ GFK E DLP IM S D C +MK + GA +L KP+ +L+NIWQH
Sbjct: 74 SCSLGGFKFLENA---KDLPTIMTSKDQCLNTMMKCIALGAVEFLSKPLSEDKLKNIWQH 130
Query: 133 VAQQ 136
V +
Sbjct: 131 VVHK 134
>gi|320449473|ref|YP_004201569.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Thermus scotoductus SA-01]
gi|320149642|gb|ADW21020.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Thermus scotoductus SA-01]
Length = 225
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+VDDDP L +L LR +EV + E AL++ + D++I D+ +P +D
Sbjct: 1 MRVLLVDDDPALLEVLGAYLRGAGFEVLEAKDGEKALELFPRA----DLIILDLMLPKLD 56
Query: 78 GFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
GFK+ E+V E +LP++M++ G ++ +KG+ GA +Y++KP KE+
Sbjct: 57 GFKVLEEVRRERPELPILMLTARGEEEERVKGLELGADDYVVKPFSPKEV 106
>gi|383757563|ref|YP_005436548.1| chemotaxis protein CheY [Rubrivivax gelatinosus IL144]
gi|381378232|dbj|BAL95049.1| chemotaxis protein CheY [Rubrivivax gelatinosus IL144]
Length = 131
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 16/131 (12%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAE------IALDMLRMSKNGYDIVI 68
P+ L+ L+VDD RI+ +L++ CN A+ +AL+MLR SK YD V+
Sbjct: 3 PSDLKFLIVDDFSTMRRIVRGLLKEM-----GCNNADEAEDGVVALNMLRASK--YDFVV 55
Query: 69 SDVHMPDMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
SD++MP+M+GF+L + + G +PV+M++ + +D++ GA Y++KP
Sbjct: 56 SDINMPNMNGFELLKSIKADGSLKHIPVLMVTAEARKEDIVLAAQSGAAGYIVKPFTKAT 115
Query: 126 LRNIWQHVAQQ 136
L Q + Q+
Sbjct: 116 LEEKVQKILQK 126
>gi|2981051|gb|AAC06222.1| response regulator [Pseudomonas aeruginosa PAO1]
Length = 239
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L ++DDP L + L +EVT C L R GYD+++ D+ +P DG
Sbjct: 10 RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGPEGLAAAR--SGGYDLILMDIMLPGRDG 67
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++ Q E LPVI+MS G QD + G + GA +YL KP + ELR
Sbjct: 68 LEILRQRRQEQALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELR 116
>gi|313202285|ref|YP_004040943.1| Fis family two component sigma54 specific transcriptional regulator
[Methylovorus sp. MP688]
gi|312441601|gb|ADQ85707.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Methylovorus sp. MP688]
Length = 457
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L +DD+P R+LE LR+ Y+ ALD+LR + G D+V+SD+HMP MDG
Sbjct: 6 RILALDDEPNMRRLLEISLRQAGYQPVVAENGREALDILR--EGGADLVVSDLHMPVMDG 63
Query: 79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+L + + E + +PVI+++ G + + GA +Y+L+P ++ L
Sbjct: 64 LQLLQAMQKEGLQVPVIIVTAQGEISTAVAAMKLGASDYILRPFDLETL 112
>gi|449448936|ref|XP_004142221.1| PREDICTED: two-component response regulator-like APRR7-like
[Cucumis sativus]
Length = 797
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D ++ +L C YEV A ML N D+V+++V MP +
Sbjct: 89 LKVLLVENDDSTRHLVTALLCNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCLS 148
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 149 GIGLLCKIMNHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 207
>gi|332664922|ref|YP_004447710.1| guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
gi|332333736|gb|AEE50837.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
Length = 1603
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
A + +LVVDD+PI ++L+ L Y++T E AL L K+ +D+V+ DV MP
Sbjct: 1189 APVHILVVDDEPINQQVLKSHLSALKYDITSALNGEDALKALSNGKH-FDLVLLDVMMPR 1247
Query: 76 MDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
M G+++ EQ+ L +LPVIM++ QD++ G+ GA +Y+ KP E
Sbjct: 1248 MSGYEVCEQIRKKFLPSELPVIMITAKNQVQDLVHGLNTGANDYITKPFTKDEF 1301
>gi|150025465|ref|YP_001296291.1| two-component system response regulatory protein [Flavobacterium
psychrophilum JIP02/86]
gi|149772006|emb|CAL43482.1| Two-component system response regulatory protein [Flavobacterium
psychrophilum JIP02/86]
Length = 227
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
++L +DD + + L + Y +T CN +IALD + N +DI I D+ MP
Sbjct: 2 TNFKILYTEDDETLAFLTKDNLEQNNYNITHCNDGQIALDTFK--NNPFDICILDIMMPK 59
Query: 76 MDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+DGF+L + L ++P++ +S +D +KG+ GA +YL+KP I+EL
Sbjct: 60 IDGFELATAIRKLNTNIPILFLSAKTLKEDRIKGLKLGADDYLIKPFSIEEL 111
>gi|340508704|gb|EGR34354.1| hypothetical protein IMG5_014920 [Ichthyophthirius multifiliis]
Length = 545
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 9/127 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ VLV +DD L +L C Y+VT +A D L + D+V+ D+ MP+MD
Sbjct: 11 IHVLVAEDDNFQRLALIDVLTLCNYQVTDVENGRLARDELLKEDSNIDVVLLDLWMPEMD 70
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
G++L +E++ ++PVIMMS D + V + HGA +YL+KPIRI+ ++ I
Sbjct: 71 GWELLCLMQNYEKL---RNIPVIMMSADNEQEKVALCLAHGAKDYLVKPIRIQMVKGIAN 127
Query: 132 HVAQQPK 138
HV K
Sbjct: 128 HVISSNK 134
>gi|66809777|ref|XP_638612.1| cAMP phosphodiesterase [Dictyostelium discoideum AX4]
gi|3183160|sp|Q23917.1|PDE2_DICDI RecName: Full=3',5'-cyclic-nucleotide phosphodiesterase regA;
Short=PDEase regA; AltName: Full=Phosphodiesterase 2;
Short=DdPDE2; AltName: Full=Response regulator protein
A; AltName: Full=cAMP-specific 3',5'-cAMP
phosphodiesterase 2
gi|1405368|gb|AAB03508.1| RegA [Dictyostelium discoideum]
gi|3046777|emb|CAA06513.1| RegA [Dictyostelium discoideum]
gi|60467179|gb|EAL65213.1| cAMP phosphodiesterase [Dictyostelium discoideum AX4]
Length = 793
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 20/147 (13%)
Query: 2 SPASSSVA-VSDQF-PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRM 59
SP+S V+ SD++ P+ +R+LV DDD + +IL +L+K Y VT EIA + +
Sbjct: 142 SPSSHRVSDFSDEYSPSKVRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINK 201
Query: 60 SKNGYDIVISDVHMPDMDGFKLHEQVG---LEMDLPVIMMSVDGCTQDVMKG---VTHGA 113
+ YD+V++DV MP + GF L +++ + +PVI+MS G D + G
Sbjct: 202 GQQKYDLVLTDVMMPHITGFDLLQRINDHPVHRHIPVILMS--GTAVDYKYANDTIKIGG 259
Query: 114 CNYLLKPIRIKE---------LRNIWQ 131
++L KPI KE L++IWQ
Sbjct: 260 QDFLTKPI-AKELLKKKIDTVLQSIWQ 285
>gi|224124202|ref|XP_002330130.1| pseudo response regulator [Populus trichocarpa]
gi|222871264|gb|EEF08395.1| pseudo response regulator [Populus trichocarpa]
Length = 541
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D+D + + +L KC Y+VT A +D L DI++S+V +P
Sbjct: 25 VRILLCDNDAKSSQEVFTLLLKCSYQVTSVRSARQVIDALNAEGPEIDIILSEVDIPMTK 84
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G K+ + + + DL PVIMMS V+K + GA +YL+KP+R EL N+W H+
Sbjct: 85 GMKMLKYIMRDKDLRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHM 143
>gi|307111029|gb|EFN59264.1| hypothetical protein CHLNCDRAFT_137569, partial [Chlorella
variabilis]
Length = 188
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 69/131 (52%), Gaps = 11/131 (8%)
Query: 8 VAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCL-YEVTKCNRAEIALDMLRMSKNGYDI 66
+A S QFP GLRVL+VDD I ++ L Y VT + A AL LR +D+
Sbjct: 1 MAGSSQFPKGLRVLLVDDMHSCSSIRTQLESPSLQYTVTSVSSATEALGYLRTGVAAFDV 60
Query: 67 VISDVHMPDMDGFKLHEQVGLEM-----DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
V+++ + D E VG + PV++MS G DVM+ V GA ++L KP+
Sbjct: 61 VLAESRIVAAD-----ESVGRCFVDAFEETPVVLMSACGTPDDVMRAVKLGAVDFLDKPL 115
Query: 122 RIKELRNIWQH 132
+L+NIWQH
Sbjct: 116 SHLKLKNIWQH 126
>gi|153004853|ref|YP_001379178.1| response regulator receiver modulated metal dependent
phosphohydrolase [Anaeromyxobacter sp. Fw109-5]
gi|152028426|gb|ABS26194.1| response regulator receiver modulated metal dependent
phosphohydrolase [Anaeromyxobacter sp. Fw109-5]
Length = 357
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD ++ +L + Y VT + AE ALD R++ + +VISDV MP DG
Sbjct: 10 RILIVDDDTSVRDVIAVLLGEEGYAVTAVSSAEAALDAARLTD--FSLVISDVRMPGKDG 67
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
F L E+V L D VIM++ G T+ ++ + +GA +YLLKP ++ +L
Sbjct: 68 FWLLERVRELHPDTAVIMLTAFGDTEAAVECLRNGAADYLLKPPKVTDL 116
>gi|118351764|ref|XP_001009157.1| Protein kinase domain containing protein [Tetrahymena thermophila]
gi|89290924|gb|EAR88912.1| Protein kinase domain containing protein [Tetrahymena thermophila
SB210]
Length = 818
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
+ VLV +DD L +L C Y+VT +A D L + DIV+ D++MP+M
Sbjct: 2 NIHVLVAEDDNFQRLALIDILTLCDYQVTAVENGRLARDELLKQDSNIDIVLLDLYMPEM 61
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
DGF+L HE + +PVIMMS D + V + GA +Y+ KP+R++ ++ I
Sbjct: 62 DGFELLSLMQEHENL---QKIPVIMMSSDKEEEKVATCIAKGAKDYIFKPLRVQNVKAIA 118
Query: 131 QHV 133
++V
Sbjct: 119 KYV 121
>gi|330836364|ref|YP_004411005.1| winged helix family two component transcriptional regulator
[Sphaerochaeta coccoides DSM 17374]
gi|329748267|gb|AEC01623.1| two component transcriptional regulator, winged helix family
[Sphaerochaeta coccoides DSM 17374]
Length = 224
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 9/125 (7%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDDDP ++ +L+K + V + AL L SK D+ I D+ MP+MDG
Sbjct: 3 KILVVDDDPHLRELVRIILQKEGFAVYEAADGLEALSKLETSKA--DLAIIDLMMPNMDG 60
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI-------RIKELRNIWQ 131
F+L +++ D+PV+M++ G T +KG GA +YL+KP R+K L +Q
Sbjct: 61 FELCQELRASYDIPVLMLTAKGETAQKIKGFQAGADDYLVKPFEPLELMARVKALLKRYQ 120
Query: 132 HVAQQ 136
+A Q
Sbjct: 121 IIASQ 125
>gi|393763233|ref|ZP_10351856.1| two component sigma-54 specific Fis family transcriptional
regulator [Alishewanella agri BL06]
gi|392606150|gb|EIW89038.1| two component sigma-54 specific Fis family transcriptional
regulator [Alishewanella agri BL06]
Length = 449
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDDP LR+L L Y+V + AE AL +L +K D+V+SD+ MP +DG
Sbjct: 7 RLLLVDDDPSLLRLLTLRLEGEGYQVINADSAETALALL--AKQSVDVVLSDLRMPGLDG 64
Query: 79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L +++ LPVI+M+ G + + G +L KP+ ELR + Q Q
Sbjct: 65 MSLFDEIAKRYKGLPVILMTAHGSIPEAVAATQRGVFGFLTKPLNPAELREVLQRALNQS 124
Query: 138 KPFEE 142
P +E
Sbjct: 125 LPEQE 129
>gi|356495556|ref|XP_003516642.1| PREDICTED: two-component response regulator-like APRR2-like
[Glycine max]
Length = 533
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP GLRVL+++ D + + L Y V+ AL L S G+ + I +V
Sbjct: 14 FPKGLRVLLLEGDSSSAAEIREQLEAVDYNVSTFYDENEALSALSSSPEGFHVAIVEVST 73
Query: 74 P-DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
+ GFK E DLP IM S D C +MK + GA +L KP+ +L+NIWQH
Sbjct: 74 SCSLGGFKFLEN---SKDLPTIMTSKDQCLNTMMKCIALGAVEFLSKPLSEDKLKNIWQH 130
Query: 133 VAQQ 136
V +
Sbjct: 131 VVHK 134
>gi|7413556|emb|CAB86035.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+V++D I+ +LR C YEV + + A +L N DIV+++V MP +
Sbjct: 78 IRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLS 137
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
G L ++ ++PVIMMS V K ++ GA ++L+KPIR EL+ +WQH
Sbjct: 138 GIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQH 195
>gi|403381459|ref|ZP_10923516.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
JC66]
Length = 1069
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 68/113 (60%), Gaps = 7/113 (6%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDDDP+ L+++E +L YEVT + AL ML K +D+VISD+ MP M G+
Sbjct: 746 ILMVDDDPVNLQVMEAILSPDNYEVTMVTSGKEALAML--DKKEWDLVISDIMMPQMSGY 803
Query: 80 ----KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
K+ E+ L +LPV++++ +D+ G GA +Y+ KP+ E+R+
Sbjct: 804 ELTRKIRERFTL-TELPVLLLTARDQGKDIQAGFLAGANDYVAKPVEALEIRS 855
>gi|409993465|ref|ZP_11276605.1| two component transcriptional regulator [Arthrospira platensis str.
Paraca]
gi|291569758|dbj|BAI92030.1| two-component response regulator [Arthrospira platensis NIES-39]
gi|409935677|gb|EKN77201.1| two component transcriptional regulator [Arthrospira platensis str.
Paraca]
Length = 243
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD+ RILE L Y+V E AL+ R+++ D+V+ DV MP +DG
Sbjct: 7 RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRLTEP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|166364957|ref|YP_001657230.1| OmpR family two-component response regulator [Microcystis
aeruginosa NIES-843]
gi|425465510|ref|ZP_18844819.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 9809]
gi|166087330|dbj|BAG02038.1| two-component response regulator OmpR subfamily [Microcystis
aeruginosa NIES-843]
gi|389832235|emb|CCI24318.1| putative transcriptional regulator ycf27 [Microcystis aeruginosa
PCC 9809]
Length = 246
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L YEV E AL+ R ++ D+V+ DV MP +DG
Sbjct: 11 KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEP--DLVVLDVMMPKLDG 68
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 69 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 128
Query: 135 QQPKP 139
+ P
Sbjct: 129 KNGVP 133
>gi|392954660|ref|ZP_10320211.1| Fis family two component sigma54 specific transcriptional regulator
[Hydrocarboniphaga effusa AP103]
gi|391857317|gb|EIT67848.1| Fis family two component sigma54 specific transcriptional regulator
[Hydrocarboniphaga effusa AP103]
Length = 457
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 68/110 (61%), Gaps = 3/110 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LR+LVVDD+ R+LE ML + ++ + A ++LR + G+D+VISD+ MP ++
Sbjct: 10 LRILVVDDEANMRRVLEIMLSRRGHKTVSAGDGQAAFELLR--EGGFDLVISDLRMPVVN 67
Query: 78 GFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
G +L ++ + +P+IM++ G + ++ + GAC+YLL+P ++ L
Sbjct: 68 GIELLAKLREAGIGVPLIMITAQGSIESAVEAMRLGACDYLLRPFDVEAL 117
>gi|260063704|ref|YP_003196784.1| two-component system response regulator [Robiginitalea biformata
HTCC2501]
gi|88783149|gb|EAR14322.1| two-component system response regulator [Robiginitalea biformata
HTCC2501]
Length = 229
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 69/111 (62%), Gaps = 3/111 (2%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
G R+L+++D+ + + L++ Y V C E L+ML+ +D+VI D+ +P M
Sbjct: 2 GNRILLIEDEYAIASFVTQGLQESGYAVAVCYDGEKGLEMLQ--DGDFDLVILDIVLPGM 59
Query: 77 DGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DG ++ + G +DLP++M++ G T++V++G+ GA +YL+KP + KEL
Sbjct: 60 DGREVARTIRGQGLDLPILMLTALGSTENVVRGLDSGADDYLVKPFKFKEL 110
>gi|320450802|ref|YP_004202898.1| DNA-binding response regulator [Thermus scotoductus SA-01]
gi|320150971|gb|ADW22349.1| DNA-binding response regulator [Thermus scotoductus SA-01]
Length = 217
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+LVV+DDP ++++ L Y V AE AL ++R YD+V+ DV +P MD
Sbjct: 1 MRLLVVEDDPRVGALVQEALEADGYAVDWAKSAEEALGLVRAFP--YDLVVLDVMLPGMD 58
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
GF E + + LPV+M++ T+D ++G+ GA +YL KP ++E
Sbjct: 59 GFTFLEALRRQHKLPVLMLTARDATEDKVRGLEQGADDYLTKPFHLRE 106
>gi|297569043|ref|YP_003690387.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus
AHT2]
gi|296924958|gb|ADH85768.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfurivibrio alkaliphilus AHT2]
Length = 461
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDD+P +L IL ++LR YE AE L++ R + D++I+D+ MP MDG
Sbjct: 4 ILVVDDEPNYLVILSELLRDEGYETFTAGSAEEGLEIARHTD--LDLIITDMRMPGMDGL 61
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+L + + G+ LPVIM++ G + + GA NYL KP EL
Sbjct: 62 ELLKTIKGINPSLPVIMITAFGEVDKAVAAMRAGAFNYLTKPFDNDEL 109
>gi|195953525|ref|YP_002121815.1| winged helix family two component transcriptional regulator
[Hydrogenobaculum sp. Y04AAS1]
gi|195933137|gb|ACG57837.1| two component transcriptional regulator, winged helix family
[Hydrogenobaculum sp. Y04AAS1]
Length = 225
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
L+ L+V+DD + L LEK R +EV AL + N YDI+I DV +P +
Sbjct: 2 SLKALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQ--KAKTNSYDIIILDVVIPKI 59
Query: 77 DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DG K+ +Q+ L+ ++P+IM++ +D ++G+ GA +Y+ KP KEL
Sbjct: 60 DGVKVCKQLRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKEL 109
>gi|319791710|ref|YP_004153350.1| two component sigma-54 specific Fis family transcriptional
regulator [Variovorax paradoxus EPS]
gi|315594173|gb|ADU35239.1| putative two component, sigma54 specific, transcriptional
regulator, Fis family [Variovorax paradoxus EPS]
Length = 462
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 80/172 (46%), Gaps = 21/172 (12%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
G R+LVVDDDP LR++ L Y+VT AE AL L + +V+SDV +P
Sbjct: 5 GARLLVVDDDPDMLRLISMRLVSAGYQVTAVTSAETALTQLEIEHP--QLVLSDVRLPGR 62
Query: 77 DGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN-IWQHV- 133
DG L +++ LPVI+++ G D ++ G YL KP +EL + I Q +
Sbjct: 63 DGLALFDEIRKRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPYDARELLDKIGQALA 122
Query: 134 --AQQPKPFEESDDSYSVNQGNWRT-----SNRRKDEEEEAE--KRDDTSTL 176
A P + D+S WR SNR + EA + D S L
Sbjct: 123 LGAPASTPAKSGDES-------WRAEIVSRSNRMAELLAEARMVAKSDASVL 167
>gi|326315622|ref|YP_004233294.1| putative two component sigma-54 specific transcriptional regulator
[Acidovorax avenae subsp. avenae ATCC 19860]
gi|323372458|gb|ADX44727.1| putative two component, sigma54 specific, transcriptional regulator
[Acidovorax avenae subsp. avenae ATCC 19860]
Length = 471
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 82/184 (44%), Gaps = 21/184 (11%)
Query: 3 PASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN 62
PA+ S P R+LVVDDD LR+L L YE+T AE AL L S+
Sbjct: 2 PATPPTKTSAPRP---RILVVDDDADMLRLLSLRLNAAGYEITAVPSAEAALAQLETSRP 58
Query: 63 GYDIVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
+V+SDV +P DG L ++V LPVI+++ G D ++ G YL KP
Sbjct: 59 --QLVLSDVRLPGRDGLALFDEVRSRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPY 116
Query: 122 RIKELRN-IWQHVA-QQPKPFEESDDSYSVNQGNWRT-----SNRRKDEEEEAE--KRDD 172
K+L + I Q +A P DS WR SNR D EA + D
Sbjct: 117 DAKDLLDKIAQALALSAPATRTPQADS------TWRAEIVSRSNRMADLLAEARMVAQSD 170
Query: 173 TSTL 176
S L
Sbjct: 171 ASVL 174
>gi|330447454|ref|ZP_08311103.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328491645|dbj|GAA05600.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 1114
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 7/141 (4%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P G +LVVDD+P+ L+IL LR Y V AL M+ + D+++ D+ MP
Sbjct: 702 PNGDLILVVDDEPVNLQILNNFLRLAGYRVKTAENGPQALAMVEEQRP--DLILLDIMMP 759
Query: 75 DMDGFK----LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
+M G++ L +Q + +LP++M+S G QD +KG GA +YL KP +EL
Sbjct: 760 EMSGYEVCTILRKQYSI-FELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARI 818
Query: 131 QHVAQQPKPFEESDDSYSVNQ 151
Q Q K E + S+ Q
Sbjct: 819 QAYLQASKTEHEKQKNQSLQQ 839
>gi|320161338|ref|YP_004174562.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
gi|319995191|dbj|BAJ63962.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
Length = 239
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+VL+VDDDP LR L+ LR +EV N AL + + D+V+ DV MP MDG
Sbjct: 4 KVLIVDDDPTLLRFLQDFLRAEAFEVLAANNGHEALKL--AYQEHPDLVVLDVMMPGMDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+++ ++ D+P+I+++ QD ++G G +YL KP EL
Sbjct: 62 WEVCSRLHELSDIPIILLTAKTSEQDKLRGFQLGVDDYLTKPFSFAEL 109
>gi|86609993|ref|YP_478755.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558535|gb|ABD03492.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 246
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD+ RILE L Y+V + E AL++ K D+V+ DV MP +DG
Sbjct: 8 RILVVDDEASIRRILETRLSMIGYDVVTASDGEEALEVF--HKQDPDLVVLDVMMPKLDG 65
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + VA
Sbjct: 66 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVA 125
Query: 135 Q 135
+
Sbjct: 126 R 126
>gi|17231314|ref|NP_487862.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|17132956|dbj|BAB75521.1| two-component response regulator [Nostoc sp. PCC 7120]
Length = 242
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E ALD R K+ D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALDTFR--KSDPDLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|406917000|gb|EKD55886.1| response regulator receiver protein [uncultured bacterium]
Length = 271
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LV+DDD LR+L K L+ + V A++ + K +D+VI+D++MPD+DG
Sbjct: 10 ILVIDDDESILRLLTKFLKSEGHGVAAEINGSDAIETFKKEK--FDLVITDMYMPDLDGL 67
Query: 80 KLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
+ + + ++P+I+++ G +V+ + GA NY+ KP+ I E+R I Q
Sbjct: 68 DIIRNIKDINQNIPIIVLTAAGSITNVVHSLKLGAFNYMTKPVNINEVREIIQ 120
>gi|452944339|ref|YP_007500504.1| two component transcriptional regulator, winged helix family, CheY
[Hydrogenobaculum sp. HO]
gi|452882757|gb|AGG15461.1| two component transcriptional regulator, winged helix family, CheY
[Hydrogenobaculum sp. HO]
Length = 225
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
L+ L+V+DD + L LEK R +EV AL + N YDI+I DV +P +
Sbjct: 2 SLKALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQ--KAKTNSYDIIILDVVIPKI 59
Query: 77 DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DG K+ +Q+ L+ ++P+IM++ +D ++G+ GA +Y+ KP KEL
Sbjct: 60 DGVKVCKQLRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKEL 109
>gi|374301657|ref|YP_005053296.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio africanus str. Walvis Bay]
gi|332554593|gb|EGJ51637.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio africanus str. Walvis Bay]
Length = 480
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDDDP + EK+L +EV + E + ++ S G D+ I DV +P M G
Sbjct: 3 QILIVDDDPRLRQSFEKLLLGEGHEVVTASTGEEGVALVERSAGGLDLAIVDVRLPGMSG 62
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
+ + GL+ LPVI+M+ G T ++ GA +Y+LKP I E+ +
Sbjct: 63 LEAFRAMRGLDPQLPVIVMTAFGTTDTAIEATKAGAFDYILKPFEIPEVLTLIGKALDSR 122
Query: 138 KPFEESDDSYSVNQGNWRT 156
+P + ++G+ T
Sbjct: 123 RPAGLKSPTLGDDEGDHAT 141
>gi|209527854|ref|ZP_03276344.1| two component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
gi|376006010|ref|ZP_09783358.1| Two component transcriptional regulator, winged helix family
[Arthrospira sp. PCC 8005]
gi|423064997|ref|ZP_17053787.1| two component transcriptional regulator winged helix family
[Arthrospira platensis C1]
gi|209491711|gb|EDZ92076.1| two component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
gi|375325627|emb|CCE19111.1| Two component transcriptional regulator, winged helix family
[Arthrospira sp. PCC 8005]
gi|406714240|gb|EKD09408.1| two component transcriptional regulator winged helix family
[Arthrospira platensis C1]
Length = 243
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD+ RILE L Y+V E AL++ R ++ D+V+ DV MP +DG
Sbjct: 7 RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFRQTEP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|395494518|ref|ZP_10426097.1| DNA-binding response regulator [Pseudomonas sp. PAMC 25886]
Length = 242
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 11/166 (6%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L ++DDP+ + + L +C + VT C + L M R +D+V+ D+ +P MDG
Sbjct: 11 ILAIEDDPVLGAYVHEQLGRCGFRVTWCQNGQQGLQMAR--DQSFDVVLMDILLPGMDGL 68
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR----NIWQHVAQ 135
+ + +PVI+MS G D + G GA +YL KP + ELR I + VA
Sbjct: 69 SVLTHLRRSHSIPVILMSALGAEADRISGFRLGADDYLPKPFSMAELRVRIEAILRRVAL 128
Query: 136 QPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKPRF 181
+P + + +G+ R S R DE + RD + L + +
Sbjct: 129 DRRPLP----ALAAVRGDAR-SLRFDDELFDVFHRDQWAGLTRSEY 169
>gi|381157023|ref|ZP_09866257.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380880886|gb|EIC22976.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 790
Score = 73.6 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK 61
+PA VA LR+LVVDD+PI +++ ML K Y + ALD L S+
Sbjct: 652 APARRPVAPGPT--TALRILVVDDEPINAKVVTMMLGKMGYTASSAVNGRQALDAL--SE 707
Query: 62 NGYDIVISDVHMPDMDGFKLHEQV------GLEMDLPVIMMSVDGCTQDVMKGVTHGACN 115
+D+V D+ MPDMDG + Q+ L+ P+I ++ D + + G +
Sbjct: 708 QPFDLVFMDISMPDMDGVEATRQIRANVAGNLDPSTPIIALTAHAMKGDRERFLAAGMDD 767
Query: 116 YLLKPIRIKELRNIWQHVAQQ 136
YL KP+ K LR + Q V Q
Sbjct: 768 YLPKPVEAKALREVMQRVLAQ 788
>gi|384252672|gb|EIE26148.1| hypothetical protein COCSUDRAFT_61138 [Coccomyxa subellipsoidea
C-169]
Length = 444
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 7/127 (5%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP GL+VLVVD D + L + L + YEV+ C+ A +LR + YDI++ +
Sbjct: 17 FPNGLQVLVVDGDTSSSQCLRQKLEELAYEVSCCSSGSDASALLRKEDSSYDILLVEAKA 76
Query: 74 ---PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQD-VMKGVTHGACNYLLKPIRIKELRNI 129
DG L + LP+++MS + D V +G+ GA + L KP+ +LRNI
Sbjct: 77 LAKDATDGGSLRDSA---AHLPLVLMSEKSSSTDAVWRGIELGAADVLEKPLSSLKLRNI 133
Query: 130 WQHVAQQ 136
WQHV ++
Sbjct: 134 WQHVVRK 140
>gi|345303921|ref|YP_004825823.1| two component, sigma54 specific, Fis family transcriptional
regulator [Rhodothermus marinus SG0.5JP17-172]
gi|345113154|gb|AEN73986.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Rhodothermus marinus SG0.5JP17-172]
Length = 476
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 7/144 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDD+ + + E++ + +T C A AL++L+ + +D+VI+D MPDMDG
Sbjct: 14 ILLVDDEHLLHTLFERLFTRHGMRLTSCYNALQALEVLKKEADAFDLVITDFKMPDMDGL 73
Query: 80 KLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL-RNIWQHVAQQP 137
+L + E DL VIM++ Q ++ + +GA +Y+ KP +EL + +A++
Sbjct: 74 ELLAYIRQEHPDLQVIMITAHANVQHAVRAMQNGAIDYIPKPFSTEELVERVQAALARRR 133
Query: 138 KPFEESDDSYSVNQGNWRTSNRRK 161
K EE + N+ R + RR+
Sbjct: 134 KQQEEVN-----NRTPARLAKRRR 152
>gi|354568271|ref|ZP_08987436.1| two component transcriptional regulator, winged helix family
[Fischerella sp. JSC-11]
gi|353540634|gb|EHC10107.1| two component transcriptional regulator, winged helix family
[Fischerella sp. JSC-11]
Length = 242
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E ALD R K D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALDTFR--KTDPDLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|225427316|ref|XP_002279150.1| PREDICTED: two-component response regulator-like APRR2 [Vitis
vinifera]
gi|297742160|emb|CBI33947.3| unnamed protein product [Vitis vinifera]
Length = 557
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVH 72
FP GLRVL++DDD + L + Y V T CN E AL + + + I +V
Sbjct: 14 FPKGLRVLLLDDDTTSAAEIRSKLEEMDYIVSTFCNENE-ALSAISSKPESFHVAIVEVS 72
Query: 73 MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
+ FK E DLP IM+S C +MK + GA +L KP+ +LRNIWQH
Sbjct: 73 TGNNGSFKFLETA---KDLPTIMISSIHCLSTMMKCIALGAVEFLRKPLSEDKLRNIWQH 129
Query: 133 VAQQ 136
V +
Sbjct: 130 VVHK 133
>gi|434397268|ref|YP_007131272.1| two component transcriptional regulator, winged helix family
[Stanieria cyanosphaera PCC 7437]
gi|428268365|gb|AFZ34306.1| two component transcriptional regulator, winged helix family
[Stanieria cyanosphaera PCC 7437]
Length = 246
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R+++ D+V+ DV MP +DG
Sbjct: 11 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRVAEP--DLVVLDVMMPKLDG 68
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 69 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 128
Query: 135 QQPKP 139
+ P
Sbjct: 129 KNGAP 133
>gi|422898326|dbj|BAM67029.1| timing of cab expression 1-like [Chrysanthemum seticuspe f.
boreale]
Length = 562
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D+D + +L KC Y+VT +D L + DI++S+V +P
Sbjct: 20 VRILLCDNDMKSSVEVYDLLSKCSYQVTPVRSPRQVIDALNVEGPDIDIILSEVDLPMAK 79
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GFK+ + + + DL PVIMMS V+K + GA +YL+KP+R EL N+W H+
Sbjct: 80 GFKMLKYIMRDKDLRRIPVIMMSAQDEVAVVVKCLRLGAADYLVKPLRTNELLNLWTHM 138
>gi|86608522|ref|YP_477284.1| LuxR family DNA-binding response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557064|gb|ABD02021.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 229
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 22/145 (15%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVLVVDDDP+ L++L + L + Y V C A + ++ D+V+SDV MP+MDG
Sbjct: 3 RVLVVDDDPLSLKVLSRHLTQHGYRV--CTGASGVEGLRLFAQEQPDVVVSDVVMPEMDG 60
Query: 79 F----KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL-------- 126
F +L +Q G E+ +P I +S G D ++G GA +Y++KP EL
Sbjct: 61 FEFCRQLRQQRGGEL-VPFIFLSSRGEIDDRVQGYERGADDYIIKPFEPLELVAKIEAQI 119
Query: 127 -------RNIWQHVAQQPKPFEESD 144
I + + QQ +P E+D
Sbjct: 120 ERSRRTQSEILRLIQQQSQPKPEAD 144
>gi|395005602|ref|ZP_10389477.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Acidovorax sp. CF316]
gi|394316529|gb|EJE53253.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Acidovorax sp. CF316]
Length = 477
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 70/138 (50%), Gaps = 10/138 (7%)
Query: 1 MSPAS--SSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLR 58
M P S SS S Q R+LVVDDD LR+L L+ YEV AE AL L
Sbjct: 1 MPPTSKPSSAPASGQH----RILVVDDDADMLRLLSLRLKGAGYEVIAVGSAEAALAQLE 56
Query: 59 MSKNGYDIVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117
M++ +V+SDV +P DG L ++V LPVI+++ G D ++ + G YL
Sbjct: 57 MARP--QLVLSDVRLPGKDGLALFDEVRERHPSLPVILLTAHGTIPDAVEATSRGVFTYL 114
Query: 118 LKPIRIKE-LRNIWQHVA 134
KP K+ L I Q +A
Sbjct: 115 TKPYDGKDLLEKIGQALA 132
>gi|423395055|ref|ZP_17372256.1| hypothetical protein ICU_00749 [Bacillus cereus BAG2X1-1]
gi|423405917|ref|ZP_17383066.1| hypothetical protein ICY_00602 [Bacillus cereus BAG2X1-3]
gi|401655826|gb|EJS73354.1| hypothetical protein ICU_00749 [Bacillus cereus BAG2X1-1]
gi|401660586|gb|EJS78064.1| hypothetical protein ICY_00602 [Bacillus cereus BAG2X1-3]
Length = 1018
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 66/112 (58%), Gaps = 6/112 (5%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L VDDDPI L++L+ +L + YE+ L+ L M G+D+++ DV MP M G
Sbjct: 691 RILAVDDDPINLKVLKSILPQDEYELETVTTGSEVLERLNM---GWDMILVDVMMPKMSG 747
Query: 79 FKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++L + + + +LP+++++ +D+ G GA +Y++KPI EL+
Sbjct: 748 YELTKMIRAQYSISELPIVLLTARSQPEDIYTGFLAGANDYIVKPIDALELK 799
>gi|351729060|ref|ZP_08946751.1| Fis family two component sigma-54 specific transcriptional
regulator [Acidovorax radicis N35]
Length = 471
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVLVVDDD LR+L L+ Y+V AE AL L M++ +V+SDV +P DG
Sbjct: 15 RVLVVDDDADMLRLLSLRLQAAGYDVVAVGSAEAALAQLDMARP--QLVLSDVRLPGRDG 72
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L ++V LPVI+++ G D ++ + G YL KP KEL + +AQ
Sbjct: 73 LALFDEVRARHPSLPVILLTAHGTIPDAVEATSRGVFTYLTKPYDGKEL---LEKIAQAL 129
Query: 138 KPFEESDDSYSVNQGNWRT-----SNRRKDEEEEA 167
+ N+ WR SNR D EA
Sbjct: 130 ALSAPAVTHAHANEA-WRAEIVSRSNRMTDLLAEA 163
>gi|281308388|gb|ADA58342.1| pseudo-response regulator 7a [Brassica rapa]
Length = 725
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+V++D I+ +LR C YEV + A +L N DIV+++V MP +
Sbjct: 95 IRVLLVENDDCTRYIVTALLRNCSYEVVEVANGVQAWKVLEDLNNHIDIVLTEVVMPYLS 154
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS + K ++ GA ++L+KPIR EL+ +WQHV
Sbjct: 155 GVGLLCKILNHKSRRNIPVIMMSSHDSMGLIFKCLSKGAVDFLVKPIRKNELKILWQHV 213
>gi|428214819|ref|YP_007087963.1| transmembrane sensor domain-containing protein [Oscillatoria
acuminata PCC 6304]
gi|428003200|gb|AFY84043.1| putative transmembrane sensor domain protein [Oscillatoria
acuminata PCC 6304]
Length = 1108
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 70/116 (60%), Gaps = 8/116 (6%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY--DIVISDVHM 73
A ++L+VDD+PI L++L L Y +T RA L L + +NG+ D+++ DV M
Sbjct: 695 AEFKILIVDDEPINLQVLANTLSLQNYAIT---RAANGLKALEIIENGFKPDLILLDVMM 751
Query: 74 PDMDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
P M G+++ E++ + +DLP++M++ D+++G + GA +YL+KP EL
Sbjct: 752 PRMTGYEVCEKIRQKFAAIDLPIVMLTAKNQVSDLVEGFSAGANDYLMKPFNKNEL 807
>gi|398814805|ref|ZP_10573483.1| putative regulator of cell autolysis [Brevibacillus sp. BC25]
gi|398035893|gb|EJL29119.1| putative regulator of cell autolysis [Brevibacillus sp. BC25]
Length = 1042
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 74/129 (57%), Gaps = 14/129 (10%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDDP+ L++LE +L YEVT + AL +L + +D+VISD+ MP M G
Sbjct: 702 RLLIVDDDPVNLQVLEAILPPDEYEVTMVTSGKEALAILDTKE--WDLVISDIMMPQMSG 759
Query: 79 FKL----HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI-------RIKELR 127
++L E+ L +LPV++++ +D+ G GA +Y+ KP+ RI+ L
Sbjct: 760 YELTRMIRERFTL-TELPVLLLTARSQPKDIQSGFLAGANDYVTKPVEGMEIKSRIEALT 818
Query: 128 NIWQHVAQQ 136
I Q V +Q
Sbjct: 819 TIKQSVREQ 827
>gi|222524928|ref|YP_002569399.1| winged helix family two component transcriptional regulator
[Chloroflexus sp. Y-400-fl]
gi|222448807|gb|ACM53073.1| two component transcriptional regulator, winged helix family
[Chloroflexus sp. Y-400-fl]
Length = 245
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQ P R+LV DDDP R+++ L YE T AL+ + YD++ DV
Sbjct: 13 DQPPPKRRILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAF--ERETYDLIFLDV 70
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
MP +DGF E++ + D+P+++++ T D+++G GA Y+ KP ++ E
Sbjct: 71 MMPFVDGFDACERIRAKSDVPIVIITAREGTDDIVQGFRRGADEYITKPFKVAEF 125
>gi|48210044|gb|AAT40543.1| Putative two-component response regulator protein, identical
[Solanum demissum]
Length = 352
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 58/92 (63%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ +LVV+DD +L ++ +L+KC Y+V AL LR+ + +D+V++DVH D++
Sbjct: 15 ISILVVNDDATYLPVVAGLLKKCNYQVVTVKYPIDALSKLRIKGDSFDLVVTDVHKSDIN 74
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGV 109
GF+L + + ++PV++MS D ++KG+
Sbjct: 75 GFELQQVITQAFEIPVLLMSADDKEGTILKGL 106
>gi|281308384|gb|ADA58340.1| pseudo-response regulator 3 [Brassica rapa]
Length = 492
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D I+ +L+ C YEVT A +L + D+V+++V MP
Sbjct: 64 LKVLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWKVLEDENSCIDLVLTEVVMPVNS 123
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS V K +++GA ++L+KPIR EL+N+WQHV
Sbjct: 124 GTGLLSKIMSHQTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLVKPIRKNELKNLWQHV 182
>gi|357150179|ref|XP_003575369.1| PREDICTED: two-component response regulator-like PRR1-like
[Brachypodium distachyon]
Length = 521
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
+ +R+L+ D DP R + ++LR C Y+VT +++L DI++++V +P
Sbjct: 31 SKVRILLCDSDPDSSRDVLRLLRNCSYQVTCAKSPRQVINVLNCEGAEMDIILAEVDLPV 90
Query: 76 MDGFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
FK+ + + +L P+IMMS V+K + GA YL+KP+R+ EL N+W H
Sbjct: 91 SKCFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTH 150
Query: 133 V 133
V
Sbjct: 151 V 151
>gi|297796967|ref|XP_002866368.1| pseudo-response regulator 3 [Arabidopsis lyrata subsp. lyrata]
gi|297312203|gb|EFH42627.1| pseudo-response regulator 3 [Arabidopsis lyrata subsp. lyrata]
Length = 498
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D I+ +L+ C YEV + A +L K+ D+V+++V +P
Sbjct: 66 LKVLLVENDDSTRHIVTALLKNCSYEVNAVSDVLEAWRILEDEKSCIDLVLTEVVLPVHS 125
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS V K +++GA ++L+KPIR EL+N+WQHV
Sbjct: 126 GTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLVKPIRKNELKNLWQHV 184
>gi|167755460|ref|ZP_02427587.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402]
gi|237733688|ref|ZP_04564169.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|374624755|ref|ZP_09697172.1| hypothetical protein HMPREF0978_00492 [Coprobacillus sp.
8_2_54BFAA]
gi|167704399|gb|EDS18978.1| response regulator receiver domain protein [Clostridium ramosum DSM
1402]
gi|229383286|gb|EEO33377.1| conserved hypothetical protein [Coprobacillus sp. D7]
gi|373916038|gb|EHQ47786.1| hypothetical protein HMPREF0978_00492 [Coprobacillus sp.
8_2_54BFAA]
Length = 230
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDD+ ++E L+ Y+V K + ALD L+ KN YD+ I DV MPD+DGF
Sbjct: 5 ILVVDDEQSIADLVELYLQNESYQVFKFYHGQEALDSLK--KNHYDLAILDVMMPDLDGF 62
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L +++ + PVIM++ D + G+T GA +YL KP EL
Sbjct: 63 SLLKKIREDYFFPVIMLTAKNNDMDKINGLTLGADDYLTKPFNPLEL 109
>gi|124003289|ref|ZP_01688139.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
23134]
gi|123991387|gb|EAY30818.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
23134]
Length = 1269
Score = 73.2 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 75/121 (61%), Gaps = 6/121 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+++LVVDD+P+ L++LE L Y +T+ + AL +++ SK +DI++ DV MP M
Sbjct: 885 VKILVVDDEPVNLQVLENHLSIQNYNITQASDGLKALKIIKESKEPFDIILLDVMMPKMS 944
Query: 78 GFK----LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI-RIKELRNIWQH 132
G++ + E+ L ++LPV+M++ +D+++G GA +YL KP +++ L I H
Sbjct: 945 GYEVCRTIRERFPL-VELPVLMLTAKNQPKDIVEGFDAGANDYLTKPFSKVELLSRIKTH 1003
Query: 133 V 133
V
Sbjct: 1004 V 1004
>gi|325963934|ref|YP_004241840.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470021|gb|ADX73706.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Arthrobacter phenanthrenivorans
Sphe3]
Length = 224
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDDD ++ +LR +E C ALD+ R S+ D+V+ D+ +P MDG
Sbjct: 4 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDVFRSSRP--DLVLLDLMLPGMDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ QV E D+P++M++ T DV++G+ GA +Y+ KP + EL
Sbjct: 62 IEVCRQVRAESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAEL 109
>gi|315649065|ref|ZP_07902158.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
vortex V453]
gi|315275500|gb|EFU38855.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
vortex V453]
Length = 888
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 70/114 (61%), Gaps = 5/114 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
R+LVVDDDP+ L+++ +L Y +T +AE AL +L ++ +D++ISDV MP M
Sbjct: 555 FRLLVVDDDPVNLKVIRGLLSGEGYWITVVTQAEEALRLLEQAE--WDLIISDVMMPQMS 612
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
G++L ++ + +LP+++++ +D+ G GA +YL+KP+ EL+
Sbjct: 613 GYELSRRIRQRYMLAELPILLLTARSQPEDIHMGFMSGANDYLIKPVDHLELKT 666
>gi|317056207|ref|YP_004104674.1| winged helix family two component transcriptional regulator
[Ruminococcus albus 7]
gi|315448476|gb|ADU22040.1| two component transcriptional regulator, winged helix family
[Ruminococcus albus 7]
Length = 224
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDD+P + ++ + + YEV A+D+ R K +D+++ D+ MPD DG
Sbjct: 3 RILIVDDEPDIITLISRYAEREGYEVVTAEDGSQAIDICR--KEDFDLIVMDIMMPDTDG 60
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
F +++ D+PVIM+S G D + G G +Y+ KP +EL + V + K
Sbjct: 61 FTACKKIKEFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPRELMARIKAVINRSK 120
Query: 139 PFEESDDSYSVNQGN 153
+DS VN G
Sbjct: 121 TDVSENDSGIVNIGG 135
>gi|242034251|ref|XP_002464520.1| hypothetical protein SORBIDRAFT_01g019980 [Sorghum bicolor]
gi|241918374|gb|EER91518.1| hypothetical protein SORBIDRAFT_01g019980 [Sorghum bicolor]
Length = 302
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 65 DIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIK 124
D++ISDV P D + ++V + D+P ++MS +G VMK +T GA ++L+KP+RI+
Sbjct: 12 DLIISDVCFPTEDSLLILQEVTTKFDIPTVIMSSNGDASIVMKYITSGASDFLIKPVRIE 71
Query: 125 ELRNIWQHV 133
L+NIWQHV
Sbjct: 72 VLKNIWQHV 80
>gi|302344196|ref|YP_003808725.1| response regulator receiver protein [Desulfarculus baarsii DSM
2075]
gi|301640809|gb|ADK86131.1| response regulator receiver protein [Desulfarculus baarsii DSM
2075]
Length = 139
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 9/127 (7%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKC----NRAEIALDMLRMSKNGYDIVISDVH 72
LRVL+VDD +++K L+ + + KC N E ALD+LR +N D+V+SD+H
Sbjct: 2 ALRVLIVDDSAAMRAMVKKTLKAAGFSLDKCYEGANGLE-ALDVLR--QNEVDVVLSDLH 58
Query: 73 MPDMDGFKLHEQVGLEMDLP--VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
MP+MDG +L E + E +P I+++ +G + + + + GA Y+LKP + + LR I
Sbjct: 59 MPEMDGLQLLEALQNEGRVPKCFILVTTEGRKEKLRQALAFGARGYVLKPFQPEGLRKIL 118
Query: 131 QHVAQQP 137
+ +P
Sbjct: 119 KLFVGEP 125
>gi|365831079|ref|ZP_09372634.1| hypothetical protein HMPREF1021_01398 [Coprobacillus sp. 3_3_56FAA]
gi|365262310|gb|EHM92202.1| hypothetical protein HMPREF1021_01398 [Coprobacillus sp. 3_3_56FAA]
Length = 230
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDD+ ++E L+ Y+V K + ALD L+ KN YD+ I DV MPD+DGF
Sbjct: 5 ILVVDDEQSIADLVELYLQNESYQVFKFYHGQEALDSLK--KNHYDLAILDVMMPDLDGF 62
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L +++ + PVIM++ D + G+T GA +YL KP EL
Sbjct: 63 SLLKRIREDYFFPVIMLTAKNNDMDKINGLTLGADDYLTKPFNPLEL 109
>gi|298249478|ref|ZP_06973282.1| response regulator receiver sensor signal transduction histidine
kinase [Ktedonobacter racemifer DSM 44963]
gi|297547482|gb|EFH81349.1| response regulator receiver sensor signal transduction histidine
kinase [Ktedonobacter racemifer DSM 44963]
Length = 432
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 5/109 (4%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCL--YEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
A R+LVVDDDP L+ L MLR L V A++AL+++R YD+++SD+ M
Sbjct: 6 ADARLLVVDDDPALLQALPHMLRLRLQNLHVDTAESAQLALELVR--AQSYDVIVSDIKM 63
Query: 74 PDMDGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
P MDGF L + L+ + PV++++ G ++ + GA +Y+LKPI
Sbjct: 64 PGMDGFDLLTALQDLQSETPVLLITGHGEHDLAIRALRGGAYDYILKPI 112
>gi|317130175|ref|YP_004096457.1| winged helix family two component transcriptional regulator
[Bacillus cellulosilyticus DSM 2522]
gi|315475123|gb|ADU31726.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
Length = 230
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 82/133 (61%), Gaps = 4/133 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDD+ ++L+ +++ + + + A L++ +N YD++I D+ MP++DG
Sbjct: 4 KILLVDDEQEMRKLLKVCFSASPFQLDEASNGDEAF--LKVQENNYDLIILDIMMPEIDG 61
Query: 79 FKLHEQVGLEMD--LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
F+L + +E+D +PVI+++ G T+ V++G+ GA +Y++KP KEL + V ++
Sbjct: 62 FELLNMLRVELDTEIPVILLTALGDTERVVEGLKRGADDYVVKPFEPKELVARVESVLRR 121
Query: 137 PKPFEESDDSYSV 149
K ++S+++
Sbjct: 122 SKSISTKNESFTI 134
>gi|383453102|ref|YP_005367091.1| sigma-54 dependent DNA-binding response regulator [Corallococcus
coralloides DSM 2259]
gi|380732817|gb|AFE08819.1| sigma-54 dependent DNA-binding response regulator [Corallococcus
coralloides DSM 2259]
Length = 463
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 7/125 (5%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
VLVVDDDP L++L +L + + A+ AL +L ++ D+V+SDV MP M G
Sbjct: 9 VLVVDDDPALLKVLGALLTQAGLTPHPASNAKDALALL--ARRPIDVVLSDVRMPGMSGM 66
Query: 80 KLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE----LRNIWQHVA 134
+L +VG D+PV++M+ G ++ + GA +++LKP +E L+ H +
Sbjct: 67 ELLAEVGRGWPDVPVLLMTAHGTVPLAVEAMKAGAADFVLKPFDREELLFSLKKALLHAS 126
Query: 135 QQPKP 139
Q P+P
Sbjct: 127 QDPEP 131
>gi|410462149|ref|ZP_11315750.1| response regulator (CheY-like receiver, AAA-type ATPase and
DNA-binding domain containing protein) [Desulfovibrio
magneticus str. Maddingley MBC34]
gi|409984732|gb|EKO41020.1| response regulator (CheY-like receiver, AAA-type ATPase and
DNA-binding domain containing protein) [Desulfovibrio
magneticus str. Maddingley MBC34]
Length = 460
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDDDP L +LE L Y+V N AL++L S+ +VISD+ MP MDG
Sbjct: 12 ILVVDDDPHILEVLEVRLVSAGYDVVAANNGLEALEVL--SRQPVRLVISDMRMPGMDGM 69
Query: 80 KLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ E++ + LP+I ++ G ++ + HGA +YL KP +EL
Sbjct: 70 RMLEEMERRGIKLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQEL 117
>gi|390958996|ref|YP_006422753.1| PAS domain-containing protein [Terriglobus roseus DSM 18391]
gi|390413914|gb|AFL89418.1| PAS domain S-box [Terriglobus roseus DSM 18391]
Length = 1042
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 8/133 (6%)
Query: 4 ASSSVAVSDQFP--AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLR--- 58
A++ V V P AG++VL+VDD+ RILE +LR EV + AL ML
Sbjct: 626 ATAPVVVPKPLPLLAGVKVLIVDDNKTNRRILEGLLRIWGMEVASAPEGDTALAMLHAAG 685
Query: 59 MSKNGYDIVISDVHMPDMDGFKLHEQVG--LEMDLPVIMM-SVDGCTQDVMKGVTHGACN 115
+ + Y ++++D+HMP MDGF + +Q+ + LP +MM S G D + G
Sbjct: 686 LEGSPYRLLLTDMHMPKMDGFMVVQQMKQDTSLALPTVMMLSSGGHHGDANRCEQLGISA 745
Query: 116 YLLKPIRIKELRN 128
YLLKP+R +EL++
Sbjct: 746 YLLKPVRRQELQD 758
Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 20/139 (14%)
Query: 5 SSSVAVSDQFPA--GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN 62
+ S V+D PA L +L+ +D+ + ++ ++L+K + V N A++ K
Sbjct: 778 TQSTLVAD-LPAVRSLHILLAEDNEVNQKLAVRLLQKRGHSVVVANNGREAVEASESRK- 835
Query: 63 GYDIVISDVHMPDMDGFKL-----HEQVGLEMDLPVIMMSVDGCTQDVMKG-----VTHG 112
YD+V+ DV MP+MDG + + G L ++ M T VMKG +
Sbjct: 836 -YDLVLMDVQMPEMDGIQATIAIRAREAGSGARLAIVAM-----TALVMKGDRERCMAAD 889
Query: 113 ACNYLLKPIRIKELRNIWQ 131
YL KPIR +EL + +
Sbjct: 890 MDGYLSKPIRPQELDAVLE 908
>gi|229828178|ref|ZP_04454247.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM
14600]
gi|229792772|gb|EEP28886.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM
14600]
Length = 250
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ VL+V+DDP ++ LE LR +VT E AL ++ + YD+V+ D+ +PD
Sbjct: 21 IHVLIVEDDPAIVKSLEDFLRGQEMQVTSAGGQEEALQ--KLQERPYDLVLLDITLPDGS 78
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHV 133
G+ + V + PVI ++ G V+ G GA +Y+ KP R +EL RN+ +H
Sbjct: 79 GYSVCNAVKRDYQTPVIFLTASGDENSVVTGFDLGAEDYIAKPFRPRELVSRIRNVLRHT 138
Query: 134 AQQ 136
+Q
Sbjct: 139 KRQ 141
>gi|218441116|ref|YP_002379445.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7424]
gi|218173844|gb|ACK72577.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
Length = 247
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 6/146 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R + D+V+ DV MP +DG
Sbjct: 11 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTSP--DLVVLDVMMPKLDG 68
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 69 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 128
Query: 135 QQPKPFEESDDSYSVNQGNWRTSNRR 160
+ P S V T+ R+
Sbjct: 129 KNGAPGIPSSGVIHVGSIKIDTNKRQ 154
>gi|408481332|ref|ZP_11187551.1| DNA-binding response regulator [Pseudomonas sp. R81]
Length = 242
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
VL ++DDP+ +++ L +C + VT C + L M R +D+V+ D+ +P +DG
Sbjct: 11 VLTIEDDPVLGAYVQEHLGRCGFHVTWCQNGQQGLQMAR--NQVFDVVLMDILLPGLDGL 68
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR----NIWQHVAQ 135
+ + +PVI+MS G D + G GA +YL KP + ELR I + VA
Sbjct: 69 SILTHLRQSHSIPVILMSALGAEADRISGFRLGADDYLPKPFSMIELRVRIEAILRRVAL 128
Query: 136 QPKPFEE----SDDSYSV----------NQGNWRTSNRRKDEEEEAEKRDDTSTLKKP 179
+P DD+ ++ + G+W R + E R+ L KP
Sbjct: 129 DRRPLPSLAPARDDARTLRFDDELCDVFHLGHWAGLTRSEYRLLETLHRNAEEVLSKP 186
>gi|402698894|ref|ZP_10846873.1| DNA-binding response regulator [Pseudomonas fragi A22]
Length = 242
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L ++DDP+ L + L +C +EV C + L R + +D+V+ D+ +P M+G
Sbjct: 10 RLLAIEDDPVLGAYLHEQLLRCGFEVVWCQNGQEGLA--RARQEPFDVVLMDILLPGMNG 67
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++ Q+ LPVI+MS G D + G GA +YL KP + ELR
Sbjct: 68 LQVLTQLRQTHALPVILMSALGAEADRISGFQLGADDYLPKPFSMAELR 116
>gi|427729957|ref|YP_007076194.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Nostoc sp. PCC 7524]
gi|427365876|gb|AFY48597.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Nostoc sp. PCC 7524]
Length = 242
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E ALD R K D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALDTFR--KADPDLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|389579043|ref|ZP_10169070.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Desulfobacter postgatei 2ac9]
gi|389400678|gb|EIM62900.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Desulfobacter postgatei 2ac9]
Length = 471
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLY-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+LVVDD+ R+L++ L L VT E+AL++L ++ +D+VISD+ MP MDG
Sbjct: 5 ILVVDDEKDMTRLLQRTLEPELNCRVTMAFSGEMALNILGLADTAFDLVISDIRMPGMDG 64
Query: 79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
F L EQ+ + DL V+M++ G + + G+ GA +++ KP E+
Sbjct: 65 FDLLEQLKQKYPDLTVVMLTAYGNIESAVAGIKKGAYDFIAKPFEQDEI 113
>gi|329926298|ref|ZP_08280817.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF5]
gi|328939333|gb|EGG35690.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF5]
Length = 1050
Score = 72.8 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L VDDDP+ LRIL +L Y + A AL++L +D++I+DV MP+M
Sbjct: 719 VRILAVDDDPVNLRILAGILSAEPYNLNVVASAAEALELL--GSQPWDLLIADVMMPEMS 776
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
G++L V +LPV++++ G + DV G GA +Y+ KP+ ELR
Sbjct: 777 GYELTRTVRERFNASELPVLLLTARGESADVYAGFQSGANDYVTKPVDPVELR 829
>gi|317969839|ref|ZP_07971229.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. CB0205]
Length = 253
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
A L++LV DD+ RILE L +EVT AL+ R S+ D+V+ DV MP+
Sbjct: 8 APLKILVADDEENIRRILETRLVMLGHEVTLAENGAQALEHFRASEP--DVVVLDVMMPE 65
Query: 76 MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+DGF + E++ + ++P+I+++ G D + G+ GA +Y++KP KEL
Sbjct: 66 LDGFAVTERIRAQSEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKEL 116
>gi|354581215|ref|ZP_09000119.1| two component transcriptional regulator, winged helix family
[Paenibacillus lactis 154]
gi|353201543|gb|EHB66996.1| two component transcriptional regulator, winged helix family
[Paenibacillus lactis 154]
Length = 223
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+++LVVDDD L+++ L + YEV + N + AL++L ++ IV DV MP MD
Sbjct: 1 MKILVVDDDYDILQLVTIHLLREGYEVLQANNGQHALELLEETEVSLAIV--DVMMPGMD 58
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
GF L + E+D+PVI+++ G D +G G+ +YL+KP KEL
Sbjct: 59 GFSLTRILTKELDIPVILLTAKGQISDKEQGFKSGSEDYLVKPFEPKEL 107
>gi|317129755|ref|YP_004096037.1| winged helix family two component transcriptional regulator
[Bacillus cellulosilyticus DSM 2522]
gi|315474703|gb|ADU31306.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
Length = 230
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 88/146 (60%), Gaps = 12/146 (8%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCL----YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
R+L+VDD+ + + K+LR CL Y + + + E A+D ++S + YD+++ D+ MP
Sbjct: 4 RILLVDDE----QEMRKLLRVCLTPYSYLLDEASNGEEAID--KISADFYDLILLDIMMP 57
Query: 75 DMDGFKLHEQVGLEMD--LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
++DGF+L + + +D PVI+++ G T+ +++G+ GA +YL+KP KEL +
Sbjct: 58 EVDGFELLKTLREHLDNKTPVILLTALGDTERIVEGLKLGADDYLVKPFEPKELAARVES 117
Query: 133 VAQQPKPFEESDDSYSVNQGNWRTSN 158
V ++ K ++ +S+ V ++ SN
Sbjct: 118 VIRRTKNYKSKVESFIVKDLVFQPSN 143
>gi|159487595|ref|XP_001701808.1| response regulator of potential two component system [Chlamydomonas
reinhardtii]
gi|158281027|gb|EDP06783.1| response regulator of potential two component system [Chlamydomonas
reinhardtii]
Length = 610
Score = 72.8 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 28/145 (19%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML---RMSKNGYDIVISDVHM 73
G V++V+DD I L+++E++LRK Y V+ + AL +L + + D++++D+ M
Sbjct: 5 GFHVVLVEDDNICLKVVEQLLRKLSYRVSTASDGAAALKVLADCKQRGDKVDLILTDILM 64
Query: 74 PDMDGFKL-HEQVGLEM--DLPVI----------------------MMSVDGCTQDVMKG 108
P++ GF L +E V E D+PV+ +MS + V++
Sbjct: 65 PEVTGFDLINEVVHGETFADIPVVASGTFLGFGRRTVRTVAWSRCQVMSSQDSQESVLQA 124
Query: 109 VTHGACNYLLKPIRIKELRNIWQHV 133
GA +YL+KPIR EL +WQHV
Sbjct: 125 FQAGAADYLIKPIRKNELATLWQHV 149
>gi|375109772|ref|ZP_09756013.1| two component, sigma54 specific, transcriptional regulator, Fis
family protein [Alishewanella jeotgali KCTC 22429]
gi|397169146|ref|ZP_10492581.1| two component, sigma54 specific, transcriptional regulator, Fis
family protein [Alishewanella aestuarii B11]
gi|374570149|gb|EHR41291.1| two component, sigma54 specific, transcriptional regulator, Fis
family protein [Alishewanella jeotgali KCTC 22429]
gi|396089226|gb|EJI86801.1| two component, sigma54 specific, transcriptional regulator, Fis
family protein [Alishewanella aestuarii B11]
Length = 449
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDDP LR+L L Y+V + AE AL +L +K D+V+SD+ MP +DG
Sbjct: 7 RLLLVDDDPSLLRLLTLRLEGEGYQVINADSAETALTLL--AKQSVDVVLSDLRMPGLDG 64
Query: 79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L +++ +PVI+M+ G + + G +L KP+ ELR + Q Q
Sbjct: 65 MSLFDEIAKRYKGVPVILMTAHGSIPEAVAATQRGVFGFLTKPLNPAELREVLQRALNQS 124
Query: 138 KPFEE 142
P +E
Sbjct: 125 LPEQE 129
>gi|307149957|ref|YP_003885341.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7822]
gi|306980185|gb|ADN12066.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7822]
Length = 242
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 6/125 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R + D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTNP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 124
Query: 135 QQPKP 139
+ P
Sbjct: 125 KNGAP 129
>gi|302842110|ref|XP_002952599.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f.
nagariensis]
gi|300262238|gb|EFJ46446.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f.
nagariensis]
Length = 1021
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
G VL VDDDPI ++E +L Y+V + ALD L+ + D+++ D+ MPD
Sbjct: 535 GGCMVLSVDDDPINQMVVENLLSPEGYKVEQAMSGSEALDFLKKTATLPDVILLDIMMPD 594
Query: 76 MDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
M G+++ +++ + +P+IM+S G + VMKG+ G+ +Y+ KP +EL + +
Sbjct: 595 MSGYEVCQEIRRRYSAVSIPIIMVSAKGHPEHVMKGLEAGSVDYVKKPFHRQELLSRIRA 654
Query: 133 VAQQPKPFEESDDSYSVNQ 151
+ + FE +S V +
Sbjct: 655 QVRNREIFEAEMESRKVTE 673
>gi|449461539|ref|XP_004148499.1| PREDICTED: two-component response regulator-like APRR2-like
[Cucumis sativus]
gi|449530967|ref|XP_004172463.1| PREDICTED: two-component response regulator-like APRR2-like
[Cucumis sativus]
Length = 521
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP GLRVL++D D + L + Y V C + A + + + + I +V
Sbjct: 14 FPKGLRVLLLDRDSFSATEIRSKLEEMEYVVYSCTDEKEASSAILNTPGNFHVAILEVCA 73
Query: 74 PDMD-GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
+ D FKL +G DLP+IM S C +MK + GA +LLKP+ +LRNIWQH
Sbjct: 74 RNYDESFKL---LGASKDLPIIMTSDVHCLSTMMKCIALGAVEFLLKPLSEDKLRNIWQH 130
Query: 133 V 133
V
Sbjct: 131 V 131
>gi|386812842|ref|ZP_10100067.1| two-component response regulator [planctomycete KSU-1]
gi|386405112|dbj|GAB62948.1| two-component response regulator [planctomycete KSU-1]
Length = 464
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVV+DD L + +L K YEV AL++ R + YD+VI+D+ MP MDG
Sbjct: 6 KILVVEDDEYVLGSIRILLNKEGYEVNTALNGLEALNLYR--RESYDLVIADLKMPQMDG 63
Query: 79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
+L +Q+ LE D+ +IMM+ G + ++ + GA +Y+ KP+ +E+R + Q ++
Sbjct: 64 IELLKQLKLEFSDVSLIMMTAYGSIRTAVEAMKMGAYDYVTKPVSAEEIRLVIQRAFERQ 123
Query: 138 KPFEE 142
E
Sbjct: 124 NLITE 128
>gi|319657093|gb|ADV58925.1| bolting time control 1 [Beta vulgaris subsp. vulgaris]
gi|319657097|gb|ADV58927.1| bolting time control 1 [Beta vulgaris subsp. vulgaris]
gi|319657101|gb|ADV58929.1| bolting time control 1 [Beta vulgaris subsp. vulgaris]
Length = 788
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 14 FPAGL-RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH 72
P G +VL+V+ D I+ +LRKC YEV A +L N D+V+++V
Sbjct: 91 LPVGSPKVLLVESDDSTRHIVSALLRKCSYEVVGVPNGIEAWKILEDLSNQIDLVLTEVV 150
Query: 73 MPDMDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
+ G L ++ + PVIMMS V+K ++ GA ++L+KPIR EL+N+
Sbjct: 151 TSGLSGIGLLSKIMSHKSCQNTPVIMMSSHDSMGLVLKCLSKGAVDFLVKPIRKNELKNL 210
Query: 130 WQHV 133
WQHV
Sbjct: 211 WQHV 214
>gi|449439291|ref|XP_004137419.1| PREDICTED: two-component response regulator-like APRR1-like
[Cucumis sativus]
Length = 557
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D+D + K+L KC Y+V + A +D L DI++S+V +P
Sbjct: 32 VRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAK 91
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G K+ + + + +L PVIMMS V+K + GA +YL+KP+R EL N+W H+
Sbjct: 92 GMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHM 150
>gi|254414140|ref|ZP_05027907.1| response regulator receiver domain protein [Coleofasciculus
chthonoplastes PCC 7420]
gi|196178815|gb|EDX73812.1| response regulator receiver domain protein [Coleofasciculus
chthonoplastes PCC 7420]
Length = 245
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R S+ D+V+ DV MP +DG
Sbjct: 10 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRTSEP--DLVVLDVMMPKLDG 67
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 68 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 115
>gi|171911888|ref|ZP_02927358.1| two component transcriptional regulator, winged helix family
protein [Verrucomicrobium spinosum DSM 4136]
Length = 227
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVLVV+DDP R L LR+ Y V A R +N YD+++ DV +P +
Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDG--AEGFQRALENEYDVIVLDVMLPGLS 69
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHV 133
G++ +++ PV+M++ QD +KG+ GA +YL KP I+EL R + +
Sbjct: 70 GWEFLQKLRPTKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRA 129
Query: 134 AQQPKP 139
A QP+P
Sbjct: 130 AGQPQP 135
>gi|255547335|ref|XP_002514725.1| sensory transduction histidine kinase, putative [Ricinus communis]
gi|223546329|gb|EEF47831.1| sensory transduction histidine kinase, putative [Ricinus communis]
Length = 550
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D+D + +L KC Y+VT A +D L DI++S+V +P
Sbjct: 22 VRILLCDNDSKSSEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPDIDIILSEVDLPMNK 81
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G K+ + + + +L PVIMMS V+K + GA +YL+KP+R EL N+W H+
Sbjct: 82 GMKMLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHM 140
>gi|34499879|gb|AAQ73525.1| timing of CAB expression 1 [Mesembryanthemum crystallinum]
Length = 544
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D+D + +L C Y+VT A +D L DI++S+V +P
Sbjct: 29 VRILLCDNDSKSCEEVFGLLSNCSYQVTAVRSARQVIDALNAEGPDIDIILSEVDLPTKK 88
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G K+ + + + DL PVIMMS V+K + GA +YL+KP+R E+ N+W H+
Sbjct: 89 GLKMLKYIMRDRDLQRIPVIMMSTQDEVSLVVKCLRLGAADYLVKPLRTNEMLNLWTHM 147
>gi|428209322|ref|YP_007093675.1| winged helix family two component transcriptional regulator
[Chroococcidiopsis thermalis PCC 7203]
gi|428011243|gb|AFY89806.1| two component transcriptional regulator, winged helix family
[Chroococcidiopsis thermalis PCC 7203]
Length = 242
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E ALD R K D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFR--KADPDLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|172038915|ref|YP_001805416.1| two-component response regulator [Cyanothece sp. ATCC 51142]
gi|354552794|ref|ZP_08972102.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. ATCC 51472]
gi|171700369|gb|ACB53350.1| two-component response regulator [Cyanothece sp. ATCC 51142]
gi|353556116|gb|EHC25504.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. ATCC 51472]
Length = 243
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 6/146 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E ALD+ + D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAVP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 124
Query: 135 QQPKPFEESDDSYSVNQGNWRTSNRR 160
+ P S S+ T+ R+
Sbjct: 125 KNGAPGIPSSGVISIASIKIDTNKRQ 150
>gi|94268821|ref|ZP_01291291.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93451451|gb|EAT02291.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 461
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDD+P +L ILE++LR+ YEV + AL++++ S D+VI+D+ MP +DG
Sbjct: 4 ILVVDDEPNYLVILEELLREEGYEVFCAESGQQALEIIKQSD--LDLVITDMRMPGLDGL 61
Query: 80 KLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+L + DLPVIM++ G + + + GA NYL KP EL
Sbjct: 62 ELLKSSKERNPDLPVIMITAFGEVEKAVAAMRTGAFNYLTKPFDNDEL 109
>gi|294461183|gb|ADE76155.1| unknown [Picea sitchensis]
Length = 465
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 54/94 (57%), Gaps = 8/94 (8%)
Query: 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFEESDD-----SYSV 149
+MS +G T VMKG+THGAC+Y +KPIRI+ELRNIWQHV ++ DD
Sbjct: 14 VMSTNGDTSVVMKGITHGACDYFIKPIRIEELRNIWQHVVRRRGRESLKDDLGECEDREA 73
Query: 150 NQGNWRTSNRRKDEEE---EAEKRDDTSTLKKPR 180
+ TS +RKD E DD S+LK+ R
Sbjct: 74 SDSPETTSKKRKDTSSGDFSDEVIDDISSLKRAR 107
>gi|150018635|ref|YP_001310889.1| two component, sigma54 specific, Fis family transcriptional
regulator [Clostridium beijerinckii NCIMB 8052]
gi|149905100|gb|ABR35933.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Clostridium beijerinckii NCIMB 8052]
Length = 472
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVLV DD+ +L+ L K YEV + AL M + +N YD+ I D+ MP++D
Sbjct: 15 VRVLVADDELSLRMVLQTALNKVGYEVDTVKNGKEALCMAQ--ENHYDVAILDIRMPEVD 72
Query: 78 GFK-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
G + +E ++ +LP+I+M+ G ++ + + HGA +Y+LKP + E++ I
Sbjct: 73 GLQAFYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNLDEVKII 125
>gi|119511035|ref|ZP_01630155.1| Two component Transcriptional regulator, Winged helix family
protein [Nodularia spumigena CCY9414]
gi|119464286|gb|EAW45203.1| Two component Transcriptional regulator, Winged helix family
protein [Nodularia spumigena CCY9414]
Length = 242
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R S+ D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSEP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|407773846|ref|ZP_11121146.1| two component sigma-54-specific Fis family transcriptional
regulator [Thalassospira profundimaris WP0211]
gi|407283292|gb|EKF08833.1| two component sigma-54-specific Fis family transcriptional
regulator [Thalassospira profundimaris WP0211]
Length = 456
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P +R+L+VDD+ ++R L LR +VT + E A L++ +N +DI++ D+ +P
Sbjct: 2 PRQIRILIVDDEESFVRSLSFALRTEGMDVTGVHSGEDAF--LQVRENKFDIILLDLRLP 59
Query: 75 DMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+G ++ + + L++D+PVIM+S G T+ +K V GA +YL KP + EL
Sbjct: 60 GANGMEVLDSIRKLDIDVPVIMISAHGDTRAAVKAVKLGAADYLSKPFELDEL 112
>gi|257069251|ref|YP_003155506.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Brachybacterium faecium DSM 4810]
gi|256560069|gb|ACU85916.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Brachybacterium faecium DSM 4810]
Length = 231
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 8/152 (5%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+V+DD L + L + Y VT+ +R AL + +++ D+VI D+ +PD+DG
Sbjct: 3 RLLLVEDDSAIAEPLSRALDREGYTVTRASRGMDALGIAAGAES-IDLVILDLGLPDLDG 61
Query: 79 FKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135
++ ++ GLE P+++++ D + G+ GA +Y+ KP R+ EL+ + + +
Sbjct: 62 LEVARRLRKGGLEC--PILILTARADEVDAVVGLDAGADDYVTKPFRLGELQARIRALMR 119
Query: 136 QPKPFEESDDSYSVNQGNWRTSNRR--KDEEE 165
+ + EES DSY VN S RR D EE
Sbjct: 120 RSQATEESGDSYDVNGVTLDVSARRAYADGEE 151
>gi|449486993|ref|XP_004157464.1| PREDICTED: LOW QUALITY PROTEIN: two-component response
regulator-like APRR1-like [Cucumis sativus]
Length = 557
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D+D + K+L KC Y+V + A +D L DI++S+V +P
Sbjct: 32 VRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAK 91
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G K+ + + + +L PVIMMS V+K + GA +YL+KP+R EL N+W H+
Sbjct: 92 GMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHM 150
>gi|359437315|ref|ZP_09227383.1| two-component system, NtrC family, response regulator YfhA
[Pseudoalteromonas sp. BSi20311]
gi|359444817|ref|ZP_09234584.1| two-component system, NtrC family, response regulator YfhA
[Pseudoalteromonas sp. BSi20439]
gi|358027981|dbj|GAA63632.1| two-component system, NtrC family, response regulator YfhA
[Pseudoalteromonas sp. BSi20311]
gi|358041386|dbj|GAA70833.1| two-component system, NtrC family, response regulator YfhA
[Pseudoalteromonas sp. BSi20439]
Length = 449
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
+S P+ +VL+VDDD L++L ++ YEVT C+ AL +L+ +D VI+
Sbjct: 1 MSVTLPSSAKVLLVDDDASLLQLLAIRIQSKGYEVTTCDSGMNALQLLK--SQVFDAVIT 58
Query: 70 DVHMPDMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
D+ M +MDG LH Q+ LPVIMM+ G D ++ G ++ KP+ EL
Sbjct: 59 DLRMDEMDGMALHRQLQSRYPALPVIMMTAHGSIPDAVEATKQGIFAFITKPVDKDEL 116
>gi|145514151|ref|XP_001442986.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410347|emb|CAK75589.1| unnamed protein product [Paramecium tetraurelia]
Length = 819
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ VL+ +D PI L +L+ C Y+V C A D L ++N +D+++ D+ +P+M
Sbjct: 14 INVLLAEDAPIQRIALIDLLQLCNYQVVACETGIQARDELLKTENEFDLILLDLGLPEMT 73
Query: 78 GFKLHE---QVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
G +L + + D+PVIMMS D T+ V + GA +Y++KP+ K+L+ + V
Sbjct: 74 GLELLQIIKAIDKLKDVPVIMMSGDDETETVAACLNAGAEDYMVKPVNFKKLQGLQTFVK 133
Query: 135 QQPK 138
++PK
Sbjct: 134 KKPK 137
>gi|15240235|ref|NP_200946.1| two-component response regulator-like APRR1 [Arabidopsis thaliana]
gi|52783243|sp|Q9LKL2.1|APRR1_ARATH RecName: Full=Two-component response regulator-like APRR1; AltName:
Full=ABI3-interacting protein 1; AltName:
Full=Pseudo-response regulator 1; AltName: Full=Timing
of CAB expression 1
gi|9247020|gb|AAF86252.1|AF272039_1 timing of CAB expression 1 protein [Arabidopsis thaliana]
gi|7576354|dbj|BAA94547.1| pseudo-response regulator 1 [Arabidopsis thaliana]
gi|9757859|dbj|BAB08493.1| pseudo-response regulator 1 [Arabidopsis thaliana]
gi|20453054|gb|AAM19772.1| AT5g61380/mfb13_150 [Arabidopsis thaliana]
gi|29028744|gb|AAO64751.1| At5g61380/mfb13_150 [Arabidopsis thaliana]
gi|332010077|gb|AED97460.1| two-component response regulator-like APRR1 [Arabidopsis thaliana]
Length = 618
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D+D L + +L +C Y+VT A +D L DI+++++ +P
Sbjct: 19 VRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIILAEIDLPMAK 78
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G K+ + + DL PVIMMS V+K + GA +YL+KP+R EL N+W H+
Sbjct: 79 GMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNELLNLWTHM 137
>gi|434391939|ref|YP_007126886.1| two component transcriptional regulator, winged helix family
[Gloeocapsa sp. PCC 7428]
gi|428263780|gb|AFZ29726.1| two component transcriptional regulator, winged helix family
[Gloeocapsa sp. PCC 7428]
Length = 242
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E ALD R ++ D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRKAQP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|126658619|ref|ZP_01729765.1| two-component response regulator [Cyanothece sp. CCY0110]
gi|126620056|gb|EAZ90779.1| two-component response regulator [Cyanothece sp. CCY0110]
Length = 243
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 6/146 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E ALD+ + D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 124
Query: 135 QQPKPFEESDDSYSVNQGNWRTSNRR 160
+ P S S+ T+ R+
Sbjct: 125 KNGAPGIPSSGVISIASIKIDTNKRQ 150
>gi|109631198|gb|ABG35775.1| SRR383 [Striga asiatica]
Length = 456
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 69/103 (66%), Gaps = 24/103 (23%)
Query: 105 VMKGVTHGACNYLLKPIRIKELRNIWQHV----------------------AQQPKPFEE 142
VMKGVTHGAC+YL+KP+R++ L+NIWQHV +QPKP E+
Sbjct: 3 VMKGVTHGACDYLIKPVRMEALKNIWQHVIRKKKYEWKEKEQEQSGSVEESERQPKP-ED 61
Query: 143 SDDSYSVNQG-NWRTSNRRKDEEEEAEKRDDTSTLKKPRFLVS 184
D S S N+G NW++S +RKD+++E ++RDDTSTLKKPR + S
Sbjct: 62 LDYSSSANEGNNWKSSKKRKDDDDEGDERDDTSTLKKPRVVWS 104
>gi|169826231|ref|YP_001696389.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
gi|168990719|gb|ACA38259.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
Length = 223
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+LVVDDD L+++ L + Y+V + A+ AL +L + N D+ + DV MP MD
Sbjct: 1 MRILVVDDDVHILQLVNIYLTREGYQVLRAENAQQALALL--NGNLPDLAVVDVMMPGMD 58
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
GF L E + + D+PV++++ G +D +G G+ +Y++KP KEL
Sbjct: 59 GFTLTETLTQDYDIPVLLLTAKGELEDKERGFLAGSDDYVVKPFEPKEL 107
>gi|395803982|ref|ZP_10483223.1| two component transcriptional regulator [Flavobacterium sp. F52]
gi|395433626|gb|EJF99578.1| two component transcriptional regulator [Flavobacterium sp. F52]
Length = 228
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 4/143 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
++L +DD + + L + YEV C+ + AL + + +DI I D+ MP MD
Sbjct: 4 FKILYAEDDETLAFLTKDNLEQNHYEVIHCSDGKSALKIF--EEEEFDICIFDIMMPKMD 61
Query: 78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE-LRNIWQHVAQ 135
GF+L E V +++D+P+I +S +D +KG+ GA +YL+KP I+E L I + +
Sbjct: 62 GFELAEAVRKIDLDVPIIFLSAKTLKEDRIKGLRLGADDYLVKPFSIEELLLKIEIFLKR 121
Query: 136 QPKPFEESDDSYSVNQGNWRTSN 158
K + Y V + + T N
Sbjct: 122 SQKNIPTAKTIYEVGKYQFDTKN 144
>gi|386823377|ref|ZP_10110527.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Serratia plymuthica PRI-2C]
gi|386379715|gb|EIJ20502.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Serratia plymuthica PRI-2C]
Length = 956
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ +LVVDD PI R+L L Y+V N ALD+L S+N DIV++DV+MP+MD
Sbjct: 828 IHLLVVDDHPINRRLLSDQLSSLGYQVVTANDGVDALDVL--SRNTVDIVLTDVNMPNMD 885
Query: 78 GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
G++L +++ + LPVI ++ + ++ + + G N L KP+ ++ L + +QQ
Sbjct: 886 GYRLTQRLRQQHFTLPVIGVTANALAEEKQRCMEAGMDNCLSKPVTLETLEQTLAYYSQQ 945
>gi|254421179|ref|ZP_05034897.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
gi|196188668|gb|EDX83632.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
Length = 242
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 6/146 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E ALD R + D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTIP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 124
Query: 135 QQPKPFEESDDSYSVNQGNWRTSNRR 160
+ S ++N T+ R+
Sbjct: 125 KTGASGIPSSGVITINNIRIDTNKRQ 150
>gi|427735900|ref|YP_007055444.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Rivularia sp. PCC 7116]
gi|427370941|gb|AFY54897.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Rivularia sp. PCC 7116]
Length = 242
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E ALD R K D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALDTFR--KAIPDLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|355641861|ref|ZP_09052500.1| transcriptional activator protein pfeR [Pseudomonas sp. 2_1_26]
gi|354830576|gb|EHF14616.1| transcriptional activator protein pfeR [Pseudomonas sp. 2_1_26]
Length = 238
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+V+DDP L+ R+ + VT C L+ + +D+V+ D+ +P +DG
Sbjct: 12 RLLLVEDDPRLREDLDAHFRRRGFRVTVCGDGSHGLEA--AGREAFDLVLLDIMLPSLDG 69
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L E + E PV++MS G QD + G T GA +YL KP + EL
Sbjct: 70 LALLESLRREQATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAEL 117
>gi|428778687|ref|YP_007170473.1| response regulator containing a CheY-like receiver domain and an
HTH DNA-binding domain [Dactylococcopsis salina PCC
8305]
gi|428692966|gb|AFZ49116.1| response regulator containing a CheY-like receiver domain and an
HTH DNA-binding domain [Dactylococcopsis salina PCC
8305]
Length = 219
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQ P L L+VDDDP + +++ L YEV + + LD+L K D++I D+
Sbjct: 7 DQKPRQL--LLVDDDPNLILLIQDYLEFQGYEVKSADNGQEVLDIL--EKYIPDLIICDI 62
Query: 72 HMPDMDGFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
MPD+DG+++ E++ + + PVI +S G T D +KG+T GA YL+KP +EL
Sbjct: 63 MMPDIDGYEMVERIREDSRISWIPVIFLSAKGQTTDRVKGLTKGADVYLVKPFEPEELVA 122
Query: 129 IWQHVAQQPKPFEESDDS 146
+ +Q F+E +S
Sbjct: 123 QVESSLKQVNRFQERYES 140
>gi|75908099|ref|YP_322395.1| two component transcriptional regulator [Anabaena variabilis ATCC
29413]
gi|427709346|ref|YP_007051723.1| winged helix family two component transcriptional regulator [Nostoc
sp. PCC 7107]
gi|427715805|ref|YP_007063799.1| winged helix family two component transcriptional regulator
[Calothrix sp. PCC 7507]
gi|75701824|gb|ABA21500.1| two component transcriptional regulator, winged helix family
[Anabaena variabilis ATCC 29413]
gi|427348241|gb|AFY30965.1| two component transcriptional regulator, winged helix family
[Calothrix sp. PCC 7507]
gi|427361851|gb|AFY44573.1| two component transcriptional regulator, winged helix family
[Nostoc sp. PCC 7107]
Length = 242
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R K+ D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFR--KSDPDLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|334186214|ref|NP_191826.2| putative two-component response regulator ARR20 [Arabidopsis
thaliana]
gi|332646857|gb|AEE80378.1| putative two-component response regulator ARR20 [Arabidopsis
thaliana]
Length = 352
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 14/140 (10%)
Query: 54 LDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGA 113
+ L +K+ D+VI D HMPD++G +G +MDLPV++MS + + VM+ + +GA
Sbjct: 1 MAFLMKNKHEIDLVIWDFHMPDINGLDALNIIGKQMDLPVVIMSHEYKKETVMESIKYGA 60
Query: 114 CNYLLKPIRIKELRNIWQHVAQQ-------PKPFE----ESD-DSY-SVNQGNWRTSNRR 160
C++L+KP+ + + +W+HV ++ KP E ESD D Y + Q N SN
Sbjct: 61 CDFLVKPVSKEVIAVLWRHVYRKRMSKSGLDKPGESGTVESDPDEYDDLEQDNLYESN-E 119
Query: 161 KDEEEEAEKRDDTSTLKKPR 180
+ + + +++ S KKPR
Sbjct: 120 EGSKNTCDHKEEKSPTKKPR 139
>gi|317968094|ref|ZP_07969484.1| two-component response regulator [Synechococcus sp. CB0205]
Length = 249
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
PA +LVVDD+P RILE L Y+V + AL+ R + D+V+ DV MP
Sbjct: 7 PAKETILVVDDEPSIRRILETRLSMIGYQVVTACDGQEALEAFRNTNP--DLVVLDVMMP 64
Query: 75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+DG+ + +++ E D+P++M++ G D + G+ GA +Y++KP KEL
Sbjct: 65 KLDGYGVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKEL 116
>gi|56965768|ref|YP_177502.1| two-component response regulator [Bacillus clausii KSM-K16]
gi|56912014|dbj|BAD66541.1| two-component response regulator [Bacillus clausii KSM-K16]
Length = 226
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
VLVVDD+P L ++ LRK Y + AL R+ ++ D+VI DV M MDGF
Sbjct: 6 VLVVDDEPELLELVVTYLRKESYRALTADNGADALK--RIEQDAVDLVILDVMMEGMDGF 63
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ E++ + LPVIM++ G D ++G+ GA +Y++KP KEL
Sbjct: 64 HVCERIRQKHSLPVIMLTARGNEADKVRGLKTGADDYMVKPFSPKEL 110
>gi|410696421|gb|AFV75489.1| putative domain HDIG-containing protein [Thermus oshimai JL-2]
Length = 316
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 68/111 (61%), Gaps = 3/111 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVLVVDD+P +L + L EV + + ALD+LR + + +V++D+HMP MD
Sbjct: 1 MRVLVVDDEPTQRLLLMRALAPLGVEVAEARNGKEALDLLR--EKFFHLVLTDLHMPVMD 58
Query: 78 GFKLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
G +L V + LPVI+++ DG + +KG+ GA ++L +P+ + ELR
Sbjct: 59 GLELIRAVKAQDPFLPVILLTADGERETRLKGLEAGADDFLNRPLDLAELR 109
>gi|300771641|ref|ZP_07081516.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
gi|300761630|gb|EFK58451.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
Length = 225
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ +L V+D+ IL LR + VT C+ A + K YD+++ DV MP MD
Sbjct: 2 ISILYVEDEAGLAMILSDTLRSHGFAVTHCDNGGEAFSTFQEQK--YDLLLIDVMMPVMD 59
Query: 78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
GF+L ++V G++ D+P+I ++ T+DV+ G GA +Y+ KP +I+EL
Sbjct: 60 GFELAKKVRGMDTDVPIIFLTARTQTEDVVAGFHLGANDYIKKPFKIEEL 109
>gi|329924374|ref|ZP_08279491.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF5]
gi|328940725|gb|EGG37042.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF5]
Length = 1021
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDDDP+ L++LE +L YEVT + AL +L +D+VISD+ MP M G+
Sbjct: 698 LLIVDDDPVNLQVLEAILPPDEYEVTMATSGKEALAVL--DAKAWDLVISDIMMPQMSGY 755
Query: 80 KLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
+L ++ +LPV++++ +D+ G GA +Y+ KP+ E+R+
Sbjct: 756 ELTRRIRERFTLTELPVLLLTARSQPKDIQSGFLAGANDYVTKPVEALEIRS 807
>gi|445497335|ref|ZP_21464190.1| hybrid signal transduction histidine kinase J [Janthinobacterium sp.
HH01]
gi|444787330|gb|ELX08878.1| hybrid signal transduction histidine kinase J [Janthinobacterium sp.
HH01]
Length = 1203
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
G+R+L+V+D+PI + + ML + + ALD+LR + YD+V+ DV MP+M
Sbjct: 1074 GVRILLVEDNPINQLVAQSMLSHAGASIDSVDNGRAALDLLRTDAHRYDLVLMDVQMPEM 1133
Query: 77 DGFKLHEQV--GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DGF+ ++ L+++LPV+ M+ + + + G +++ KPI ++++
Sbjct: 1134 DGFEATTRIRGELKLELPVLAMTAGVMLSEREQCIASGMNDFIAKPIDVEQM 1185
Score = 44.3 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDDDP+ L + + + + E AL +LR + YD V+ D MP M+G
Sbjct: 931 LLVVDDDPLGADYLCRTIVARGWSSDRAGSGEQALALLRSAATRYDAVLVDWDMPGMNGL 990
Query: 80 KLHEQVGLEM--DLPVIMMSVDGCTQDVMKGV--THGACNYLLKPIRIKELRNIWQ 131
+ + M + P +++ V Q + A LLKP+ + L Q
Sbjct: 991 DTMQAIRAAMPDNCPAVILMVSAFGQGKLLHTQGAEAANAVLLKPVTMARLNETLQ 1046
>gi|220913188|ref|YP_002488497.1| winged helix family two component transcriptional regulator
[Arthrobacter chlorophenolicus A6]
gi|219860066|gb|ACL40408.1| two component transcriptional regulator, winged helix family
[Arthrobacter chlorophenolicus A6]
Length = 224
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDDD ++ +LR +E C ALD+ R S+ D+V+ D+ +P +DG
Sbjct: 4 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDIFRSSRP--DLVLLDLMLPGVDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ QV E D+P++M++ T DV++G+ GA +Y+ KP + EL
Sbjct: 62 IEVCRQVRAESDVPIVMLTAKADTSDVVRGLESGADDYVPKPFKPAEL 109
>gi|51571875|dbj|BAD38854.1| pseudo-response regulator 1 [Oryza sativa Japonica Group]
Length = 518
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP R + ++L C Y+VT +++L DI++++V +P
Sbjct: 28 VRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEVDLPVSK 87
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
FK+ + + +L P+IMMS V+K + GA YL+KP+R+ EL N+W HV
Sbjct: 88 CFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHV 146
>gi|115447337|ref|NP_001047448.1| Os02g0618200 [Oryza sativa Japonica Group]
gi|68565719|sp|Q689G9.2|PRR1_ORYSJ RecName: Full=Two-component response regulator-like PRR1; AltName:
Full=Pseudo-response regulator 1; Short=OsPRR1
gi|47847546|dbj|BAD21598.1| putative timing of CAB expression 1 [Oryza sativa Japonica Group]
gi|47847675|dbj|BAD21456.1| putative timing of CAB expression 1 [Oryza sativa Japonica Group]
gi|113536979|dbj|BAF09362.1| Os02g0618200 [Oryza sativa Japonica Group]
gi|222623253|gb|EEE57385.1| hypothetical protein OsJ_07546 [Oryza sativa Japonica Group]
Length = 518
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP R + ++L C Y+VT +++L DI++++V +P
Sbjct: 28 VRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEVDLPVSK 87
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
FK+ + + +L P+IMMS V+K + GA YL+KP+R+ EL N+W HV
Sbjct: 88 CFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHV 146
>gi|392553867|ref|ZP_10301004.1| response regulator in two-component regulatory system
[Pseudoalteromonas undina NCIMB 2128]
Length = 449
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
+S P+ +VL+VDDD L++L ++ YEVT C+ AL +L+ +D VI+
Sbjct: 1 MSVTLPSSAKVLLVDDDASLLQLLAIRIQSKGYEVTTCDSGMNALQILK--SQVFDAVIT 58
Query: 70 DVHMPDMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
D+ M +MDG LH Q+ LPVIMM+ G D ++ G ++ KP+ EL
Sbjct: 59 DLRMDEMDGMALHRQLQSRYPALPVIMMTAHGSIPDAVEATKQGIFAFITKPVDKDEL 116
>gi|315127502|ref|YP_004069505.1| response regulator in two-component regulatory system
[Pseudoalteromonas sp. SM9913]
gi|315016016|gb|ADT69354.1| response regulator in two-component regulatory system
[Pseudoalteromonas sp. SM9913]
Length = 449
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
+S P+ +VL+VDDD L++L ++ YEVT C+ AL +L+ +D VI+
Sbjct: 1 MSVTLPSSAKVLLVDDDASLLQLLAIRIQSKGYEVTTCDSGMNALQLLK--NQVFDAVIT 58
Query: 70 DVHMPDMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
D+ M +MDG LH Q+ LPVIMM+ G D ++ G ++ KP+ EL
Sbjct: 59 DLRMDEMDGMALHRQLQNRYPALPVIMMTAHGSIPDAVEATKQGIFAFITKPVDKDEL 116
>gi|325679875|ref|ZP_08159444.1| putative heme response regulator HssR [Ruminococcus albus 8]
gi|324108313|gb|EGC02560.1| putative heme response regulator HssR [Ruminococcus albus 8]
Length = 224
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
++LVV+DD R++ L++ Y+ N ALDML K D++ISD+ MP+MD
Sbjct: 2 FQILVVEDDASLRRLMSAALKQNGYQPFTANDGVEALDML--EKTNIDLIISDIMMPNMD 59
Query: 78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
G++L Q+ + +P+IM++ +D +G GA +Y++KPI I E+
Sbjct: 60 GYELTRQLRNADFQIPIIMVTAKESFEDKKEGFGAGADDYMVKPIDINEM 109
>gi|157371505|ref|YP_001479494.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Serratia proteamaculans 568]
gi|157323269|gb|ABV42366.1| integral membrane sensor hybrid histidine kinase [Serratia
proteamaculans 568]
Length = 957
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 4/131 (3%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ +LVVDD PI R+L L Y+V N ALD+L ++N DIV++DV+MP+MD
Sbjct: 829 IHLLVVDDHPINRRLLSDQLGSLGYQVVTANDGVDALDVL--NRNTVDIVLTDVNMPNMD 886
Query: 78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
G++L +++ L PVI ++ + ++ + + G N L KP+ ++ L + +QQ
Sbjct: 887 GYRLTQRLRQLHFTAPVIGVTANALAEEKQRCIEAGMDNCLSKPVTLETLEQTLGYYSQQ 946
Query: 137 PKPFE-ESDDS 146
+ ES+D+
Sbjct: 947 VRRMRAESEDA 957
>gi|414077097|ref|YP_006996415.1| two-component response regulator [Anabaena sp. 90]
gi|413970513|gb|AFW94602.1| two-component response regulator [Anabaena sp. 90]
Length = 242
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL++ R ++ D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALEIFRKAEP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|375126877|gb|AFA35965.1| timing of cab expression 1/pseudo-response regulator 1 [Nicotiana
attenuata]
Length = 551
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D D + + +L KC Y+VT +D L DI++S+V +P
Sbjct: 19 VRILLCDKDAKSSQEVFTLLCKCSYQVTSARSPRQVIDALNAEGPEIDIILSEVDLPMSK 78
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G+K+ + + + +L PVIMMS V+K + GA +YL+KP+R EL N+W H+
Sbjct: 79 GYKMLKYIMRDKELRRIPVIMMSAQDEVSIVVKCLKFGAADYLVKPLRTNELLNLWTHM 137
>gi|282898472|ref|ZP_06306462.1| Two component Transcriptional regulator, Winged helix family
[Raphidiopsis brookii D9]
gi|281196638|gb|EFA71544.1| Two component Transcriptional regulator, Winged helix family
[Raphidiopsis brookii D9]
Length = 242
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R K D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFR--KANPDLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|126650615|ref|ZP_01722838.1| transcriptional activator protein [Bacillus sp. B14905]
gi|126592771|gb|EAZ86770.1| transcriptional activator protein [Bacillus sp. B14905]
Length = 230
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 73/124 (58%), Gaps = 7/124 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+++L+V+D+ + +IL K L+K Y V E AL++ + N YD++I D+++P MD
Sbjct: 1 MKLLLVEDEAVLSKILSKGLKKSGYAVDTAFDGEEALELFEI--NEYDLIILDLNLPKMD 58
Query: 78 GFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQH 132
G ++ EQ+ ++ D+ ++++S D + G+ GA +YL+KP +EL RN+ +
Sbjct: 59 GIEVLEQIRVQSEDVKILILSARSAIHDKIAGLDRGANDYLIKPFDFQELDARIRNLLRR 118
Query: 133 VAQQ 136
Q
Sbjct: 119 TFSQ 122
>gi|403374229|gb|EJY87054.1| Protein kinase domain containing protein [Oxytricha trifallax]
Length = 834
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+ +D+ L +L C YEVT + AL LR +D+V+ D++MP+MDGF
Sbjct: 9 ILLAEDEQFQRLALYDILELCDYEVTTVENGKKALVELRDETREFDLVLLDLYMPEMDGF 68
Query: 80 KL----HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
+L E L + LPV++MS DG + + GA +YL+KP+R +E + + +H++
Sbjct: 69 ELLTLMQEDEKLSL-LPVVVMSADGDKDIIANCLRMGAKDYLVKPVRFQECKGLVRHMS 126
>gi|336316621|ref|ZP_08571513.1| signal transduction histidine kinase [Rheinheimera sp. A13L]
gi|335879086|gb|EGM76993.1| signal transduction histidine kinase [Rheinheimera sp. A13L]
Length = 1056
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 6/127 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LR+LVVDD + +L +M+ C + V C + AL++L+ K+ +D+VI+D +MP MD
Sbjct: 828 LRILVVDDHDVNRMLLVRMVEYCQHHVKACGDGKQALELLQ--KHHFDLVITDCNMPVMD 885
Query: 78 GFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ-HV 133
G++L + L+ D+PV ++ ++ + + G L KPI I EL+ +++ ++
Sbjct: 886 GYQLTSAIRLDPILKDIPVFGLTASAENKERQRCLHAGMNECLFKPIGIAELQQVFKAYL 945
Query: 134 AQQPKPF 140
QP F
Sbjct: 946 KSQPSVF 952
>gi|440682389|ref|YP_007157184.1| two component transcriptional regulator, winged helix family
[Anabaena cylindrica PCC 7122]
gi|428679508|gb|AFZ58274.1| two component transcriptional regulator, winged helix family
[Anabaena cylindrica PCC 7122]
Length = 242
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL++ R ++ D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALEIFRKAEP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|218191182|gb|EEC73609.1| hypothetical protein OsI_08092 [Oryza sativa Indica Group]
Length = 518
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP R + ++L C Y+VT +++L DI++++V +P
Sbjct: 28 VRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEVDLPVSK 87
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
FK+ + + +L P+IMMS V+K + GA YL+KP+R+ EL N+W HV
Sbjct: 88 CFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHV 146
>gi|433458474|ref|ZP_20416395.1| DNA-binding response regulator [Arthrobacter crystallopoietes
BAB-32]
gi|432193286|gb|ELK50036.1| DNA-binding response regulator [Arthrobacter crystallopoietes
BAB-32]
Length = 225
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDDD ++ +LR +E C ALD+ R SK D+V+ D+ +P MDG
Sbjct: 4 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALDVFRNSKP--DLVLLDLMLPGMDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ Q+ E D+P++M++ T DV++G+ GA +Y+ KP + EL
Sbjct: 62 IEVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAEL 109
>gi|345022173|ref|ZP_08785786.1| two-component hybrid sensor and regulator [Ornithinibacillus
scapharcae TW25]
Length = 1026
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 67/114 (58%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKML-RKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
L++LVVDDDP+ + IL +L R Y +T L ++ ++ YD+VI+DV MP +
Sbjct: 697 LKILVVDDDPVNINILHSILGRDGKYAITGITNPHETLK--KLEEDAYDLVITDVMMPHI 754
Query: 77 DGFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
G++L + + +LPV++++ T+D++ G GA +Y+ KP+ EL+
Sbjct: 755 SGYELTQMIRERFSISELPVLLLTARARTEDILAGFQSGANDYVTKPVDSMELK 808
>gi|126650201|ref|ZP_01722429.1| hypothetical protein BB14905_17645 [Bacillus sp. B14905]
gi|126592851|gb|EAZ86833.1| hypothetical protein BB14905_17645 [Bacillus sp. B14905]
Length = 1021
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD+PI LR++E +L Y++ AL + + + +D+VISDV MP M G
Sbjct: 689 RILVVDDEPINLRVVETILANEQYDIVTVTSGLDAL--VSIQSHEWDLVISDVMMPKMSG 746
Query: 79 FKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
++L + + DLP+++++ Q++ KG GA +Y+ KP+ ELR+
Sbjct: 747 YELVRLIRKQFSITDLPILLLTARSQPQNLEKGFLAGANDYVTKPVDALELRS 799
>gi|381399036|ref|ZP_09924307.1| response regulator receiver [Microbacterium laevaniformans OR221]
gi|380773780|gb|EIC07213.1| response regulator receiver [Microbacterium laevaniformans OR221]
Length = 218
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDD+P + ++ + L YE T C L+ R S+ D+VI DV +P MDG
Sbjct: 3 RILIVDDEPHIVSMVTRALSAEGYETTACEDGAAGLE--RASRGDIDLVILDVGLPGMDG 60
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
F++ ++ G LPVIM++ +D + G+ GA +Y+ KP + EL
Sbjct: 61 FEVLRRLRGDGQSLPVIMLTARSSARDAVDGLDAGASDYVPKPFSLAEL 109
>gi|424941964|ref|ZP_18357727.1| two-component response regulator PfeR [Pseudomonas aeruginosa
NCMG1179]
gi|346058410|dbj|GAA18293.1| two-component response regulator PfeR [Pseudomonas aeruginosa
NCMG1179]
Length = 238
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+V+DDP L+ R+ + VT C L+ + +D+V+ D+ +P +DG
Sbjct: 12 RLLLVEDDPRLREDLDAHFRRRGFRVTVCGDGSHGLET--AGREAFDLVLLDIMLPGLDG 69
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L E + E PV++MS G QD + G T GA +YL KP + EL
Sbjct: 70 LALLESLRREQATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAEL 117
>gi|123486693|ref|XP_001324781.1| Response regulator receiver domain containing protein [Trichomonas
vaginalis G3]
gi|121907669|gb|EAY12558.1| Response regulator receiver domain containing protein [Trichomonas
vaginalis G3]
Length = 637
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 72/119 (60%), Gaps = 4/119 (3%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L +L VDDD + L + K L+ Y V+ + + AL++L+ S N +D+++SDV MP M+
Sbjct: 12 LHILAVDDDAVQLHAVTKALKSLGYHVSNASNGQEALEVLK-SGNTFDLILSDVMMPVMN 70
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G + ++ + +P+IMMS + + V ++ GA +Y++KP+ + L+N++ +V
Sbjct: 71 GPQFLQETRADSRFEQIPIIMMSSNDQYEIVFDCLSKGADDYIIKPLTPQVLKNMYANV 129
>gi|107102210|ref|ZP_01366128.1| hypothetical protein PaerPA_01003261 [Pseudomonas aeruginosa PACS2]
gi|416857773|ref|ZP_11912953.1| two-component response regulator PfeR [Pseudomonas aeruginosa
138244]
gi|416884861|ref|ZP_11922432.1| two-component response regulator PfeR [Pseudomonas aeruginosa
152504]
gi|451984147|ref|ZP_21932404.1| Two-component response regulator PfeR,enterobactin [Pseudomonas
aeruginosa 18A]
gi|334833947|gb|EGM12965.1| two-component response regulator PfeR [Pseudomonas aeruginosa
152504]
gi|334840174|gb|EGM18835.1| two-component response regulator PfeR [Pseudomonas aeruginosa
138244]
gi|451758076|emb|CCQ84927.1| Two-component response regulator PfeR,enterobactin [Pseudomonas
aeruginosa 18A]
gi|453045568|gb|EME93287.1| two-component response regulator PfeR [Pseudomonas aeruginosa
PA21_ST175]
Length = 238
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+V+DDP L+ R+ + VT C L+ + +D+V+ D+ +P +DG
Sbjct: 12 RLLLVEDDPRLREDLDAHFRRRGFRVTVCGDGSHGLEA--AGREAFDLVLLDIMLPGLDG 69
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L E + E PV++MS G QD + G T GA +YL KP + EL
Sbjct: 70 LALLESLRREQATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAEL 117
>gi|443329058|ref|ZP_21057648.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xenococcus sp. PCC 7305]
gi|442791333|gb|ELS00830.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xenococcus sp. PCC 7305]
Length = 242
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R ++ D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRGAEP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVD 124
Query: 135 QQPKP 139
+ P
Sbjct: 125 KNGAP 129
>gi|325280518|ref|YP_004253060.1| two component transcriptional regulator, winged helix family
[Odoribacter splanchnicus DSM 20712]
gi|324312327|gb|ADY32880.1| two component transcriptional regulator, winged helix family
[Odoribacter splanchnicus DSM 20712]
Length = 229
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 74/129 (57%), Gaps = 10/129 (7%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+V+DDP + +L+ L YEVT C L+ R K+ +DI + DV MP+MDG
Sbjct: 4 KILLVEDDPCFGSVLKSYLELSDYEVTLCVNGNDGLEAFR--KDKFDICLLDVMMPEMDG 61
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP-------IRIKELRNIW 130
F L +++ ++ ++P + ++ +D+ +G GA +Y++KP ++IK + +
Sbjct: 62 FTLGKKIREIDGNVPFVYITAKSMKEDMKQGYEIGADDYIVKPFDSEVLILKIKAILSRS 121
Query: 131 QHVAQQPKP 139
+H +PKP
Sbjct: 122 KHEEAEPKP 130
>gi|313107741|ref|ZP_07793921.1| two-component response regulator PfeR [Pseudomonas aeruginosa
39016]
gi|386066638|ref|YP_005981942.1| two-component response regulator [Pseudomonas aeruginosa NCGM2.S1]
gi|310880423|gb|EFQ39017.1| two-component response regulator PfeR [Pseudomonas aeruginosa
39016]
gi|348035197|dbj|BAK90557.1| two-component response regulator [Pseudomonas aeruginosa NCGM2.S1]
Length = 238
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+V+DDP L+ R+ + VT C L+ + +D+V+ D+ +P +DG
Sbjct: 12 RLLLVEDDPRLREDLDAHFRQRGFRVTVCGDGSHGLEA--AGREAFDLVLLDIMLPSLDG 69
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L E + E PV++MS G QD + G T GA +YL KP + EL
Sbjct: 70 LALLESLRREQATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAEL 117
>gi|186685833|ref|YP_001869029.1| two component transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186468285|gb|ACC84086.1| two component transcriptional regulator, winged helix family
[Nostoc punctiforme PCC 73102]
Length = 242
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R K D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFR--KTEPDLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|146302697|ref|YP_001197288.1| two component transcriptional regulator [Flavobacterium johnsoniae
UW101]
gi|146157115|gb|ABQ07969.1| two component transcriptional regulator, winged helix family
[Flavobacterium johnsoniae UW101]
Length = 228
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
++L +DD + + L + YEV C + L+ + +DI I D+ MP MD
Sbjct: 4 FKILYTEDDETLAFLTKDNLEQNNYEVIHCTNGKSGLETFK--NEDFDICIFDIMMPKMD 61
Query: 78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL---RNIWQHV 133
GF+L E+V ++ D+P+I +S +D +KG+ GA +YL+KP I+EL ++
Sbjct: 62 GFELAEEVRKIDNDVPIIFLSAKTLKEDRIKGLRLGADDYLVKPFSIEELILKIEVFLKR 121
Query: 134 AQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEE 166
+Q+ E+S Y + + + T N EEE
Sbjct: 122 SQKNNKVEKS--VYEIGKYQFDTKNFILFNEEE 152
>gi|298490023|ref|YP_003720200.1| winged helix family two component transcriptional regulator
['Nostoc azollae' 0708]
gi|298231941|gb|ADI63077.1| two component transcriptional regulator, winged helix family
['Nostoc azollae' 0708]
Length = 242
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 82/148 (55%), Gaps = 9/148 (6%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R ++ D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAEP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVD 124
Query: 135 QQPKPFEESDDSYSVNQGNWRT-SNRRK 161
+ S S ++ GN R +N+R+
Sbjct: 125 KTGATGIPS--SGVIHVGNIRIDTNKRQ 150
>gi|149919982|ref|ZP_01908457.1| two component, sigma54 specific, transcriptional regulator, Fis
family protein [Plesiocystis pacifica SIR-1]
gi|149819255|gb|EDM78689.1| two component, sigma54 specific, transcriptional regulator, Fis
family protein [Plesiocystis pacifica SIR-1]
Length = 513
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG-YDIVISDVHMPDMD 77
RVLVVDD+P ++L +L + YEV AL ++ + G +D+VISD+ MP+MD
Sbjct: 7 RVLVVDDEPNLRKVLGALLMQLGYEVLTEPDGASALARVKSAPRGTFDVVISDLRMPNMD 66
Query: 78 GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
G L E + E LPVI+++ G ++ V GA ++L KP
Sbjct: 67 GMALLEALTAEDSSLPVIILTAHGTVDTAVQAVKKGAFDFLEKPF 111
>gi|407474743|ref|YP_006789143.1| two-component response regulator [Clostridium acidurici 9a]
gi|407051251|gb|AFS79296.1| two-component response regulator [Clostridium acidurici 9a]
Length = 188
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVV+DD +++ L K Y +T + + L+ KN YD+VI D+ MP+MDG
Sbjct: 4 KILVVEDDIEIAFAIKEFLAKKRYAITWTSTGKEGLE--EFQKNKYDLVIVDIMMPEMDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR-NIWQHVAQQP 137
F L + + ++ D+P+++MS +D +KG+ GA +Y+ KP + EL I H+ +
Sbjct: 62 FTLCKNIRMKSDIPILIMSAKSQEKDKVKGLNIGADDYITKPFSLVELEARIDSHIRRYK 121
Query: 138 KPFEESDD 145
+ E+ +
Sbjct: 122 RYLGENKE 129
>gi|356513521|ref|XP_003525462.1| PREDICTED: two-component response regulator-like APRR1-like
[Glycine max]
Length = 559
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D+D + +L C Y+VT A +D L DI++++V +P
Sbjct: 37 VRILLCDNDSKSSEEVFALLLGCSYQVTSVRSARQVIDALNAEGQYIDIILAEVDLPIKK 96
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G KL + + + +L PVIMMS V+K + GA +YL+KP+R EL N+W H+
Sbjct: 97 GMKLLKYIARDKELCRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHM 155
>gi|219849054|ref|YP_002463487.1| winged helix family two component transcriptional regulator
[Chloroflexus aggregans DSM 9485]
gi|219543313|gb|ACL25051.1| two component transcriptional regulator, winged helix family
[Chloroflexus aggregans DSM 9485]
Length = 247
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQ P R+LV DDDP R+++ L YE AL+ + +D+V DV
Sbjct: 15 DQPPPKRRILVADDDPSIGRLIQTALPAQQYETVVVANGMEALEAF--DRGQFDLVFLDV 72
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
MP +DGF E++ + D+P+++++ T D+++G GA Y+ KP R+ E
Sbjct: 73 MMPFVDGFDACERIRAKSDVPIVIITARDGTDDIVQGFRRGADEYITKPFRVAEF 127
>gi|434406928|ref|YP_007149813.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Cylindrospermum stagnale PCC 7417]
gi|428261183|gb|AFZ27133.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Cylindrospermum stagnale PCC 7417]
Length = 242
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R K D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFR--KTEPDLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|152987017|ref|YP_001349316.1| two-component response regulator PfeR [Pseudomonas aeruginosa PA7]
gi|150962175|gb|ABR84200.1| two-component response regulator PfeR [Pseudomonas aeruginosa PA7]
Length = 240
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+V+DDP L+ R+ + VT C L+ + +D+V+ D+ +P +DG
Sbjct: 14 RLLLVEDDPRLREDLDAHFRQRGFHVTVCGDGSHGLEA--AGREAFDLVLLDIMLPGLDG 71
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L E + E PV++MS G QD + G T GA +YL KP + EL
Sbjct: 72 LALLESLRREQATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAEL 119
>gi|332709113|ref|ZP_08429081.1| two component transcriptional regulator, winged helix family
[Moorea producens 3L]
gi|332352119|gb|EGJ31691.1| two component transcriptional regulator, winged helix family
[Moorea producens 3L]
Length = 242
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L YEV E AL+ R ++ D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALNTFRDTEP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|395760247|ref|ZP_10440916.1| response regulator receiver [Janthinobacterium lividum PAMC 25724]
Length = 210
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDDD I L L ++L YE N AE+AL M +++ D+ + D+HMP M G
Sbjct: 11 ILIVDDDQILLEFLGEVLCHAGYETALANSAEVALQM--VAQREPDLALLDIHMPGMSGL 68
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
+L +++ E +P + +S G ++ + +GA Y++KP+
Sbjct: 69 ELAKRLHGETSVPFMFLSGSGDSESGKQAAAYGAVGYVVKPV 110
>gi|268316364|ref|YP_003290083.1| Fis family two component sigma-54 specific transcriptional
regulator [Rhodothermus marinus DSM 4252]
gi|262333898|gb|ACY47695.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Rhodothermus marinus DSM 4252]
Length = 472
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDD+ + + E++ + +T C A A+++L+ + +D+VI+D MPDMDG
Sbjct: 11 ILLVDDEHLLHTLFERLFTRHGLRLTSCYNALQAMEVLKKEADAFDLVITDFKMPDMDGL 70
Query: 80 KLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+L + E DL VIM++ Q ++ + +GA +Y+ KP +EL
Sbjct: 71 ELLAYIRQEHPDLQVIMITAHANVQHAVRAMQNGAIDYIPKPFSTEEL 118
>gi|428301223|ref|YP_007139529.1| winged helix family two component transcriptional regulator
[Calothrix sp. PCC 6303]
gi|428237767|gb|AFZ03557.1| two component transcriptional regulator, winged helix family
[Calothrix sp. PCC 6303]
Length = 242
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R ++ D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAEP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|119486641|ref|ZP_01620691.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
gi|119456258|gb|EAW37390.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
Length = 243
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R K D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFR--KTEPDLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|288905305|ref|YP_003430527.1| lantibiotic biosynthesis DNA-binding response regulator
[Streptococcus gallolyticus UCN34]
gi|325978290|ref|YP_004288006.1| lantibiotic biosynthesis DNA-binding response regulator
[Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
gi|386337752|ref|YP_006033921.1| two-component system response regulator lantibiotic associated
[Streptococcus gallolyticus subsp. gallolyticus ATCC
43143]
gi|288732031|emb|CBI13596.1| putative lantibiotic biosynthesis DNA-binding response regulator
[Streptococcus gallolyticus UCN34]
gi|325178218|emb|CBZ48262.1| lantibiotic biosynthesis DNA-binding response regulator
[Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
gi|334280388|dbj|BAK27962.1| two-component system, response regulator, lantibiotic associated
[Streptococcus gallolyticus subsp. gallolyticus ATCC
43143]
Length = 228
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+VLV+DDD L++++ +L + VT + E+ + + + GYD+++ DV MPD+DG
Sbjct: 3 KVLVIDDDFEILKLMKNILELQNFSVTTYQKIELPIRLADFT--GYDLILLDVMMPDIDG 60
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL-RNIWQHV---- 133
+L + + + P+I +S D++KG+ G +Y+ KP IK+L I H+
Sbjct: 61 MELCQTIRNHITTPIIFVSAKDTENDIIKGLNLGGDDYITKPFSIKQLVAKIEAHLKREE 120
Query: 134 --AQQPKPFEESDDSYS 148
Q K F+E +S
Sbjct: 121 RSKQAQKAFQEFKREFS 137
>gi|428217568|ref|YP_007102033.1| winged helix family two component transcriptional regulator
[Pseudanabaena sp. PCC 7367]
gi|427989350|gb|AFY69605.1| two component transcriptional regulator, winged helix family
[Pseudanabaena sp. PCC 7367]
Length = 250
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 9/148 (6%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L YEV E A+DM D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYEVVTAADGEEAIDMFHHEIP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 124
Query: 135 QQPKPFEESDDSYSVNQGNWRT-SNRRK 161
+ S S + GN R +N+R+
Sbjct: 125 RNGTSGIPS--SGVIQIGNIRIDTNKRQ 150
>gi|306831386|ref|ZP_07464545.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|304426446|gb|EFM29559.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
Length = 231
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+VLV+DDD L++++ +L + VT + E+ + + + GYD+++ DV MPD+DG
Sbjct: 6 KVLVIDDDFEILKLMKNILELQNFSVTTYQKIELPIRLADFT--GYDLILLDVMMPDIDG 63
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL-RNIWQHV---- 133
+L + + + P+I +S D++KG+ G +Y+ KP IK+L I H+
Sbjct: 64 MELCQTIRNHITTPIIFVSAKDTENDIIKGLNLGGDDYITKPFSIKQLVAKIEAHLKREE 123
Query: 134 --AQQPKPFEESDDSYS 148
Q K F+E +S
Sbjct: 124 RSKQAQKAFQEFKREFS 140
>gi|378550253|ref|ZP_09825469.1| hypothetical protein CCH26_09203 [Citricoccus sp. CH26A]
Length = 225
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDDD ++ +LR +E T C ALDM R ++ D+V+ D+ +P MDG
Sbjct: 4 RILVVDDDEALSEMIGIVLRNDGFEPTFCADGAQALDMFRSTRP--DLVLLDLMLPGMDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ + + E D P++M++ T DV++G+ GA +Y+ KP + EL
Sbjct: 62 IEVCKAIRGESDTPIVMLTAKSDTSDVVRGLEAGADDYVPKPFKPAEL 109
>gi|303246663|ref|ZP_07332941.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio fructosovorans JJ]
gi|302492003|gb|EFL51881.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio fructosovorans JJ]
Length = 459
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L VDDDP L +LE L Y+V AL++L S ++ISD+ MP MDG
Sbjct: 13 ILAVDDDPHILEVLEVRLVSAGYDVVTAEDGTEALEIL--SSRPVRLLISDIRMPGMDGM 70
Query: 80 KLHEQ-VGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+L E+ V + LP+I ++ G ++ + HGA +YL KP +EL
Sbjct: 71 RLQEEMVRRGLSLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQEL 118
>gi|297793691|ref|XP_002864730.1| hypothetical protein ARALYDRAFT_496297 [Arabidopsis lyrata subsp.
lyrata]
gi|297310565|gb|EFH40989.1| hypothetical protein ARALYDRAFT_496297 [Arabidopsis lyrata subsp.
lyrata]
Length = 623
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D+D L + +L +C Y+VT A +D L DI+++++ +P
Sbjct: 19 VRILLCDNDSKSLGEVFTLLSECSYQVTSVKSARQVIDALNAEGPDIDIILAEIDLPMAK 78
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G K+ + + DL PVIMMS V+K + GA +YL+KP+R EL N+W H+
Sbjct: 79 GMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNELLNLWTHM 137
>gi|319956809|ref|YP_004168072.1| winged helix family two component transcriptional regulator
[Nitratifractor salsuginis DSM 16511]
gi|319419213|gb|ADV46323.1| two component transcriptional regulator, winged helix family
[Nitratifractor salsuginis DSM 16511]
Length = 223
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 6/129 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+++L+V+DD L LR ++V AL L+ +N YDI++ DV++PD
Sbjct: 7 VKILLVEDDVETSEFLSTFLRDSGFDVDTVFSVTDALSHLK--QNPYDILLLDVNLPDYS 64
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR-NIWQHVAQQ 136
G +L + + E+ LP I++S G T+ + +GA +Y++KPI ++EL IW + +
Sbjct: 65 GMELLKSIKGELSLPTIILSAYGDTRSKIMAFRYGATDYMVKPIDLEELEARIWVQLGKN 124
Query: 137 ---PKPFEE 142
P FEE
Sbjct: 125 SKIPSDFEE 133
>gi|67921096|ref|ZP_00514615.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Crocosphaera watsonii WH 8501]
gi|416381162|ref|ZP_11684168.1| two-component response regulator [Crocosphaera watsonii WH 0003]
gi|67857213|gb|EAM52453.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Crocosphaera watsonii WH 8501]
gi|357265562|gb|EHJ14311.1| two-component response regulator [Crocosphaera watsonii WH 0003]
Length = 243
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 6/146 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E ALD+ + D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 124
Query: 135 QQPKPFEESDDSYSVNQGNWRTSNRR 160
+ P S ++ T+ R+
Sbjct: 125 KNGAPGIPSSGVIAIASIKIDTNKRQ 150
>gi|218247106|ref|YP_002372477.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 8801]
gi|257060175|ref|YP_003138063.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 8802]
gi|218167584|gb|ACK66321.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8801]
gi|256590341|gb|ACV01228.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8802]
Length = 243
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E ALD K D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFH--KADPDLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 124
Query: 135 QQPKP 139
+ P
Sbjct: 125 KNGVP 129
>gi|218891153|ref|YP_002440019.1| two-component response regulator PfeR [Pseudomonas aeruginosa
LESB58]
gi|254241113|ref|ZP_04934435.1| two-component response regulator PfeR [Pseudomonas aeruginosa 2192]
gi|386058349|ref|YP_005974871.1| two-component response regulator PfeR [Pseudomonas aeruginosa M18]
gi|420138441|ref|ZP_14646354.1| two-component response regulator PfeR [Pseudomonas aeruginosa CIG1]
gi|421180163|ref|ZP_15637730.1| two-component response regulator PfeR [Pseudomonas aeruginosa E2]
gi|126194491|gb|EAZ58554.1| two-component response regulator PfeR [Pseudomonas aeruginosa 2192]
gi|218771378|emb|CAW27145.1| two-component response regulator PfeR [Pseudomonas aeruginosa
LESB58]
gi|347304655|gb|AEO74769.1| two-component response regulator PfeR [Pseudomonas aeruginosa M18]
gi|403248805|gb|EJY62348.1| two-component response regulator PfeR [Pseudomonas aeruginosa CIG1]
gi|404545843|gb|EKA54912.1| two-component response regulator PfeR [Pseudomonas aeruginosa E2]
Length = 305
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+V+DDP L+ R+ + VT C L+ + +D+V+ D+ +P +DG
Sbjct: 79 RLLLVEDDPRLREDLDAHFRRRGFRVTVCGDGSHGLEA--AGREAFDLVLLDIMLPGLDG 136
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L E + E PV++MS G QD + G T GA +YL KP + EL
Sbjct: 137 LALLESLRREQATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAEL 184
>gi|418585230|ref|ZP_13149285.1| two-component response regulator PfeR [Pseudomonas aeruginosa
MPAO1/P1]
gi|418594606|ref|ZP_13158390.1| two-component response regulator PfeR [Pseudomonas aeruginosa
MPAO1/P2]
gi|421517199|ref|ZP_15963873.1| two-component response regulator PfeR [Pseudomonas aeruginosa
PAO579]
gi|375043021|gb|EHS35655.1| two-component response regulator PfeR [Pseudomonas aeruginosa
MPAO1/P2]
gi|375044959|gb|EHS37551.1| two-component response regulator PfeR [Pseudomonas aeruginosa
MPAO1/P1]
gi|404346681|gb|EJZ73030.1| two-component response regulator PfeR [Pseudomonas aeruginosa
PAO579]
Length = 238
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+V+DDP L+ R+ + VT C L+ + +D+V+ D+ +P +DG
Sbjct: 12 RLLLVEDDPRLREDLDAHFRRRGFRVTVCGDGSHGLEA--AGREAFDLVLLDIMLPGLDG 69
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L E + E PV++MS G QD + G T GA +YL KP + EL
Sbjct: 70 LALLESLRREQATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAEL 117
>gi|49084072|gb|AAT51171.1| PA2686, partial [synthetic construct]
Length = 306
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+V+DDP L+ R+ + VT C L+ + +D+V+ D+ +P +DG
Sbjct: 79 RLLLVEDDPRLREDLDAHFRRRGFRVTVCGDGSHGLEA--AGREAFDLVLLDITLPGLDG 136
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L E + E PV++MS G QD + G T GA +YL KP + EL
Sbjct: 137 LALLESLRREQATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAEL 184
>gi|421167246|ref|ZP_15625446.1| two-component response regulator PfeR [Pseudomonas aeruginosa ATCC
700888]
gi|404535178|gb|EKA44881.1| two-component response regulator PfeR [Pseudomonas aeruginosa ATCC
700888]
Length = 305
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+V+DDP L+ R+ + VT C L+ + +D+V+ D+ +P +DG
Sbjct: 79 RLLLVEDDPRLREDLDAHFRRRGFRVTVCGDGSHGLEA--AGREAFDLVLLDIMLPGLDG 136
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L E + E PV++MS G QD + G T GA +YL KP + EL
Sbjct: 137 LALLESLRREQATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAEL 184
>gi|421153896|ref|ZP_15613430.1| two-component response regulator PfeR [Pseudomonas aeruginosa ATCC
14886]
gi|404522965|gb|EKA33417.1| two-component response regulator PfeR [Pseudomonas aeruginosa ATCC
14886]
Length = 305
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+V+DDP L+ R+ + VT C L+ + +D+V+ D+ +P +DG
Sbjct: 79 RLLLVEDDPRLREDLDAHFRRRGFRVTVCGDGSHGLEA--AGREAFDLVLLDIMLPGLDG 136
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L E + E PV++MS G QD + G T GA +YL KP + EL
Sbjct: 137 LALLESLRREQATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAEL 184
>gi|423612851|ref|ZP_17588712.1| hypothetical protein IIM_03566 [Bacillus cereus VD107]
gi|401244839|gb|EJR51198.1| hypothetical protein IIM_03566 [Bacillus cereus VD107]
Length = 1018
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 6/112 (5%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L VDDDPI L++L+ +L + YE+ L+ L M +D+++ DV MP M G
Sbjct: 691 RILAVDDDPINLKVLKSILPQDEYELETVTTGREVLERLNME---WDMILVDVMMPKMSG 747
Query: 79 FKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++L + + +LP+I+++ +D+ G GA +Y++KPI EL+
Sbjct: 748 YELTRMIRAQYSIAELPIILLTARSQPEDIYTGFLAGANDYIVKPIDALELK 799
>gi|332534883|ref|ZP_08410705.1| putative sensory histidine kinase YfhA [Pseudoalteromonas
haloplanktis ANT/505]
gi|332035682|gb|EGI72171.1| putative sensory histidine kinase YfhA [Pseudoalteromonas
haloplanktis ANT/505]
Length = 449
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
G +VL+VDDD L++L + YEVT C AL +L+ +D VI+D+ M +M
Sbjct: 8 GAKVLLVDDDASLLKLLAIRIESKGYEVTTCESGLTALQILK--SQVFDAVITDLRMDEM 65
Query: 77 DGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DG LH Q+ LPVIMM+ G D ++ G ++ KP+ EL
Sbjct: 66 DGMALHRQLQSRYPALPVIMMTAHGSIPDAVEATKQGIFAFITKPVDKDEL 116
>gi|118638624|gb|ABL09468.1| pseudo-response regulator [Triticum aestivum]
gi|383215296|gb|AFG73161.1| pseudo-response regulator [Triticum aestivum]
gi|383215297|gb|AFG73162.1| pseudo-response regulator [Triticum aestivum]
gi|383215298|gb|AFG73163.1| pseudo-response regulator [Triticum aestivum]
Length = 664
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 35 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 94
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 95 SGIDLLGRIMNHE---VCKDIPVIMMSSHNSMGTVLSCLSNGAADFLAKPIRKNELKNLW 151
Query: 131 QHV 133
HV
Sbjct: 152 AHV 154
>gi|88855607|ref|ZP_01130270.1| two-component system, regulatory protein [marine actinobacterium
PHSC20C1]
gi|88814931|gb|EAR24790.1| two-component system, regulatory protein [marine actinobacterium
PHSC20C1]
Length = 226
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDDD ++ +LR YE C +ALD + + D+V+ D+ +P MDG
Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGYEPFFCQDGALALDAFKSAAP--DLVLLDLMLPGMDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ ++ E +P+IM++ T DV+KG+ GA +Y++KP KEL
Sbjct: 62 IEICARIREESGVPIIMLTAKSDTADVVKGLESGADDYVVKPFNPKEL 109
>gi|443315643|ref|ZP_21045123.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Leptolyngbya sp. PCC 6406]
gi|442784737|gb|ELR94597.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Leptolyngbya sp. PCC 6406]
Length = 242
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 6/146 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R + D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRTAHP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 124
Query: 135 QQPKPFEESDDSYSVNQGNWRTSNRR 160
+ S ++N T+ R+
Sbjct: 125 KGHSTGIPSSGVITINNIRIDTNKRQ 150
>gi|427418250|ref|ZP_18908433.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Leptolyngbya sp. PCC 7375]
gi|425760963|gb|EKV01816.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Leptolyngbya sp. PCC 7375]
Length = 263
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 6/146 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E ALD R D+V+ DV MP +DG
Sbjct: 28 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRHEIP--DLVVLDVMMPKLDG 85
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 86 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 145
Query: 135 QQPKPFEESDDSYSVNQGNWRTSNRR 160
+ S ++N T+ R+
Sbjct: 146 KTGTSGIPSSGVITINNIRIDTNKRQ 171
>gi|359440712|ref|ZP_09230625.1| two-component system, NtrC family, response regulator YfhA
[Pseudoalteromonas sp. BSi20429]
gi|358037418|dbj|GAA66874.1| two-component system, NtrC family, response regulator YfhA
[Pseudoalteromonas sp. BSi20429]
Length = 449
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
G +VL+VDDD L++L + YEVT C AL +L+ +D VI+D+ M +M
Sbjct: 8 GAKVLLVDDDASLLKLLAIRIESKGYEVTTCESGLTALQILK--SQVFDAVITDLRMDEM 65
Query: 77 DGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DG LH Q+ LPVIMM+ G D ++ G ++ KP+ EL
Sbjct: 66 DGMALHRQLQSRYPALPVIMMTAHGSIPDAVEATKQGIFAFITKPVDKDEL 116
>gi|282898613|ref|ZP_06306601.1| Two component Transcriptional regulator, Winged helix family
[Cylindrospermopsis raciborskii CS-505]
gi|281196481|gb|EFA71390.1| Two component Transcriptional regulator, Winged helix family
[Cylindrospermopsis raciborskii CS-505]
Length = 242
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R K D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFR--KADPDLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|392533179|ref|ZP_10280316.1| response regulator in two-component regulatory system
[Pseudoalteromonas arctica A 37-1-2]
Length = 449
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
G +VL+VDDD L++L + YEVT C AL +L+ +D VI+D+ M +M
Sbjct: 8 GAKVLLVDDDASLLKLLAIRIESKGYEVTTCESGLTALQILK--SQVFDAVITDLRMDEM 65
Query: 77 DGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DG LH Q+ LPVIMM+ G D ++ G ++ KP+ EL
Sbjct: 66 DGMALHRQLQSRYPALPVIMMTAHGSIPDAVEATKQGIFAFITKPVDKDEL 116
>gi|159475341|ref|XP_001695777.1| hypothetical protein CHLREDRAFT_174408 [Chlamydomonas reinhardtii]
gi|158275337|gb|EDP01114.1| predicted protein [Chlamydomonas reinhardtii]
Length = 2212
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 76/138 (55%), Gaps = 7/138 (5%)
Query: 1 MSPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS 60
MS A ++ + + P+ LR+LVVD + + ++LR+C Y+VT A L L +
Sbjct: 1488 MSAAGQALGLPE--PSKLRILVVDSKAVSRQTTTQLLRECAYQVTAVKTAREGLQKLIEA 1545
Query: 61 KNG--YDIVISDVHMPDMDGFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACN 115
++G +D+V+ + P + +L +++ L PV++ S + VM ++ GA +
Sbjct: 1546 EHGANFDLVLKEHEPPSANACRLLKRMAKTEGLTRTPVVVTSSQDERETVMSCLSLGAID 1605
Query: 116 YLLKPIRIKELRNIWQHV 133
YL+KP+R ELR+IW V
Sbjct: 1606 YLIKPLRQNELRHIWTRV 1623
>gi|456012396|gb|EMF46099.1| Two-component response regulator colocalized with HrtAB transporter
[Planococcus halocryophilus Or1]
Length = 224
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L VDDD + + LR+ YEVT+ E AL++L D+ + DV MP +D
Sbjct: 2 IRILAVDDDIHMVNFIAAELRQAGYEVTEALSGEQALEIL--ESETMDLAVVDVMMPGID 59
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
GF+L V + DLPVI+++ +D +G G+ +YL+KP KEL
Sbjct: 60 GFELTRIVRGDYDLPVILLTARHHIEDKERGFLAGSDDYLVKPFEAKEL 108
>gi|228954946|ref|ZP_04116963.1| hypothetical protein bthur0006_43110 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|423426802|ref|ZP_17403833.1| hypothetical protein IE5_04491 [Bacillus cereus BAG3X2-2]
gi|423502646|ref|ZP_17479238.1| hypothetical protein IG1_00212 [Bacillus cereus HD73]
gi|449091633|ref|YP_007424074.1| hypothetical protein HD73_4975 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228804673|gb|EEM51275.1| hypothetical protein bthur0006_43110 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401110368|gb|EJQ18277.1| hypothetical protein IE5_04491 [Bacillus cereus BAG3X2-2]
gi|402459885|gb|EJV91613.1| hypothetical protein IG1_00212 [Bacillus cereus HD73]
gi|449025390|gb|AGE80553.1| hypothetical protein HD73_4975 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 1018
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L VDDDPI L++L+ +L + YE+ L+ L M +D+++ DV MP M G
Sbjct: 691 RILAVDDDPINLKVLKSILPQDEYELETVTTGREVLERLNME---WDMILVDVMMPKMSG 747
Query: 79 FKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++L + + + +LP+++++ +D+ G GA +Y++KPI EL+
Sbjct: 748 YELTKMIRTQYSIAELPIVLLTARSQPEDIYTGFLAGANDYIVKPIDALELK 799
>gi|47565087|ref|ZP_00236130.1| sensory box sensor histidine kinase/response regulator VC0622
[Bacillus cereus G9241]
gi|47557873|gb|EAL16198.1| sensory box sensor histidine kinase/response regulator VC0622
[Bacillus cereus G9241]
Length = 1018
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L VDDDPI L++L+ +L + YE+ L+ L M +D+++ DV MP M G
Sbjct: 691 RILAVDDDPINLKVLKSILPQDEYELETVTTGREVLERLNME---WDMILVDVMMPKMSG 747
Query: 79 FKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++L + + + +LP+++++ +D+ G GA +Y++KPI EL+
Sbjct: 748 YELTKMIRTQYSIAELPIVLLTARSQPEDIYTGFLAGANDYIVKPIDALELK 799
>gi|344343727|ref|ZP_08774594.1| response regulator receiver protein [Marichromatium purpuratum 984]
gi|343804711|gb|EGV22610.1| response regulator receiver protein [Marichromatium purpuratum 984]
Length = 142
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P G RVLVVDD P RI K+L + Y+V E A+ + R S D+++ DV MP
Sbjct: 20 PPGARVLVVDDSPTETRIFAKVLTQAGYQVETATNGEEAIAVARRSHP--DLILMDVVMP 77
Query: 75 DMDGF---KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
++GF ++ ++ D+PVIM++ D G+ GA +YL+KPI
Sbjct: 78 VLNGFQATRMLQRDAETADIPVIMVTTKDQQTDRTWGLRQGAVDYLVKPI 127
>gi|94969947|ref|YP_591995.1| response regulator receiver protein [Candidatus Koribacter
versatilis Ellin345]
gi|94551997|gb|ABF41921.1| response regulator receiver protein [Candidatus Koribacter
versatilis Ellin345]
Length = 126
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 71/123 (57%), Gaps = 11/123 (8%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKC---LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
+R L++DD + +I+E+ LR+ L +V + AL++LR N D+++SD++M
Sbjct: 3 AIRALIIDDSSVMRKIVERSLRQAGVALSQVMEAGNGAEALNLLR--SNPVDLILSDINM 60
Query: 74 PDMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
P MDG + ++ GL + PV+M++ +G V++ V+ GA Y+ KP +++
Sbjct: 61 PVMDGLEFVRRLKAEGLAANAPVVMITTEGSESQVVQAVSSGARGYIRKPFTADQVK--- 117
Query: 131 QHV 133
+HV
Sbjct: 118 EHV 120
>gi|300869112|ref|ZP_07113711.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
gi|300332881|emb|CBN58907.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
Length = 247
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E ALD R + D+V+ DV MP +DG
Sbjct: 11 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTDP--DLVVLDVMMPKLDG 68
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 69 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 116
>gi|357632197|ref|ZP_09130075.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio sp. FW1012B]
gi|357580751|gb|EHJ46084.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio sp. FW1012B]
Length = 453
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L VDDDP L +LE L Y+V AL++L +K +VISD+ MP MDG
Sbjct: 11 ILAVDDDPHILEVLEVRLVSAGYDVVTAGDGAEALEVL--AKRPVKLVISDIRMPGMDGM 68
Query: 80 KLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+L E++ + LP+I ++ G ++ + HGA +YL KP +EL
Sbjct: 69 RLLEEMERRGIRLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQEL 116
>gi|400975161|ref|ZP_10802392.1| two-component system response regulator [Salinibacterium sp. PAMC
21357]
Length = 226
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDDD ++ +LR YE C +ALD + + D+V+ D+ +P MDG
Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGYEPFFCQDGALALDAFKSAAP--DLVLLDLMLPGMDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ ++ E +P+IM++ T DV+KG+ GA +Y++KP KEL
Sbjct: 62 IEICARIREESGVPIIMLTAKSDTADVVKGLESGADDYVVKPFNPKEL 109
>gi|262276330|ref|ZP_06054139.1| response regulator [Grimontia hollisae CIP 101886]
gi|262220138|gb|EEY71454.1| response regulator [Grimontia hollisae CIP 101886]
Length = 385
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY-DIVISDVHMPD 75
G VL+V+DDPI+ RI+ LRK E AE LD L+ + G D+++SD+ MP
Sbjct: 38 GKEVLIVEDDPIFSRIISHFLRK---EGCTVREAENGLDGLKALREGIPDLLLSDLSMPV 94
Query: 76 MDGFKLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
M G + E+V +E LPVI++S G DV + + G ++L+KPI
Sbjct: 95 MTGLEFVEEVSMEYPMLPVIVISGTGGMADVAQALRFGVKDFLIKPI 141
>gi|118638626|gb|ABL09469.1| truncated pseudo-response regulator [Triticum aestivum]
gi|383215295|gb|AFG73160.1| pseudo-response regulator [Triticum aestivum]
Length = 432
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP--- 74
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M
Sbjct: 35 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 94
Query: 75 ---DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
D+ G ++ +V D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 95 SGIDLLGRIMNHEVC--KDIPVIMMSSHNSMGTVLSCLSNGAADFLAKPIRKNELKNLWA 152
Query: 132 HV 133
HV
Sbjct: 153 HV 154
>gi|124112128|ref|YP_001019064.1| regulatory component of sensory transduction system [Chlorokybus
atmophyticus]
gi|124012235|gb|ABM87971.1| regulatory component of sensory transduction system [Chlorokybus
atmophyticus]
Length = 241
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 79/147 (53%), Gaps = 6/147 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+++VVDD+ I +I++ L Y V N E A+ M K +V+ DV MP +DG
Sbjct: 9 KIMVVDDEAIVRQIIQTRLSMIGYNVITANDGEEAIKMF--FKEQPQLVVLDVMMPKLDG 66
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +Q+ E D+P+IM++ D + G+ GA +Y++KP KEL R++++
Sbjct: 67 YSVCQQLRRESDVPIIMLTALEDVADRITGLELGADDYIMKPFSPKELEARIRSVFRRSN 126
Query: 135 QQPKPFEESDDSYSVNQGNWRTSNRRK 161
+ +++ DS +N G+ +RK
Sbjct: 127 RNSYVVKQNKDSSIINIGSLIIDKKRK 153
>gi|213691891|ref|YP_002322477.1| two component transcriptional regulator, winged helix family
[Bifidobacterium longum subsp. infantis ATCC 15697 = JCM
1222]
gi|213523352|gb|ACJ52099.1| two component transcriptional regulator, winged helix family
[Bifidobacterium longum subsp. infantis ATCC 15697 = JCM
1222]
Length = 221
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 64/109 (58%), Gaps = 5/109 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+L++DDD L +++ L K + VT + A + L+ L NGYD++I D+ MPDMDG
Sbjct: 4 ILMIDDDRPILELVKNGLEKDGHSVTIHTSAAHVPLEGL----NGYDLIILDIMMPDMDG 59
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
F ++ +D P++ ++ +D+ G+ GA +YL KP RI ELR
Sbjct: 60 FTYCGKIRSLVDCPILFLTAKTMERDITSGLGLGADDYLTKPFRIAELR 108
>gi|188996860|ref|YP_001931111.1| response regulator receiver protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188931927|gb|ACD66557.1| response regulator receiver protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 130
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLY-EVTKCNRAEIALDMLRMSKNGYDIVISDVH 72
FP R+L VDD +I++ +L + Y + + + AL L+ SK YD+V+ D +
Sbjct: 3 FPVASRILTVDDMATMRKIIKSLLNQLGYTNIDEAENGKEALAKLKQSK--YDLVLLDWN 60
Query: 73 MPDMDGFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR-- 127
MP+MDG L +++ + D+PVIM++ + ++V+ + GA NY++KP + L+
Sbjct: 61 MPEMDGITLLQEIRKDTHLKDIPVIMVTAEAKKENVLIAIQSGANNYIVKPFTAETLKEK 120
Query: 128 --NIWQHV 133
+WQ +
Sbjct: 121 LEKVWQQI 128
>gi|261407243|ref|YP_003243484.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
Y412MC10]
gi|261283706|gb|ACX65677.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
Y412MC10]
Length = 1051
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ +L VDDDP+ LRIL +L Y ++ A AL++L +D++I+DV MP+M
Sbjct: 720 VSILAVDDDPVNLRILAGILSAEPYNLSVVASAAEALELL--GSQPWDLLIADVMMPEMS 777
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
G++L V +LPV++++ G + DV G GA +Y+ KP+ ELR
Sbjct: 778 GYELTRTVRERFNAAELPVLLLTARGESADVYAGFQSGANDYVTKPVDPVELR 830
>gi|386393158|ref|ZP_10077939.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Desulfovibrio sp. U5L]
gi|385734036|gb|EIG54234.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Desulfovibrio sp. U5L]
Length = 453
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L VDDDP L +LE L Y+V AL++L +K +VISD+ MP MDG
Sbjct: 11 ILAVDDDPHILEVLEVRLVSAGYDVVTAGDGAEALEVL--AKRPVKLVISDIRMPGMDGM 68
Query: 80 KLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+L E++ + LP+I ++ G ++ + HGA +YL KP +EL
Sbjct: 69 RLLEEMERRGIRLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQEL 116
>gi|354581917|ref|ZP_09000820.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
lactis 154]
gi|353200534|gb|EHB65994.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
lactis 154]
Length = 1038
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 12/127 (9%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDDDP+ LR+LE +L Y++T + AL +L + +D+VI+D+ MP M G+
Sbjct: 711 LLIVDDDPVNLRVLEAILPTGEYDLTMATSGKEALALL--DRKEWDLVITDIMMPQMSGY 768
Query: 80 KLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI-------RIKELRNI 129
+L ++ +LP+++++ D+ G GA +Y+ KP+ RI+ L I
Sbjct: 769 ELTRRIRERFTLTELPILLLTARSQPNDIQSGFMAGANDYVTKPVEALEIRSRIQALTTI 828
Query: 130 WQHVAQQ 136
Q V +Q
Sbjct: 829 KQTVREQ 835
>gi|384431901|ref|YP_005641261.1| winged helix family two component transcriptional regulator
[Thermus thermophilus SG0.5JP17-16]
gi|333967369|gb|AEG34134.1| two component transcriptional regulator, winged helix family
[Thermus thermophilus SG0.5JP17-16]
Length = 225
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 68/110 (61%), Gaps = 5/110 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+VDDDP L +L LR +EV + E AL++ + D++I D+ +P +D
Sbjct: 1 MRVLLVDDDPALLEVLGAYLRGAGFEVLQAEDGERALELYPRA----DLIILDLMLPKLD 56
Query: 78 GFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
GF++ +V E +LP++M++ G ++ +KG+ GA +Y++KP KE+
Sbjct: 57 GFRVLAEVRRERPELPILMLTARGEEEERVKGLELGADDYVVKPFSPKEV 106
>gi|253995418|ref|YP_003047482.1| Fis family two component sigma54 specific transcriptional regulator
[Methylotenera mobilis JLW8]
gi|253982097|gb|ACT46955.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Methylotenera mobilis JLW8]
Length = 457
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L VDD+P LR+LE LR+ Y+ AL+++ + D V++D+HMP MDG
Sbjct: 8 ILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALEVINAQQ--VDCVVTDLHMPRMDGL 65
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+L ++V + +LPVI+++ G + + +GA +Y+L+P + EL
Sbjct: 66 QLLKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPFDLAEL 113
>gi|319657095|gb|ADV58926.1| bolting time control 1 [Beta vulgaris subsp. vulgaris]
gi|319657099|gb|ADV58928.1| bolting time control 1 [Beta vulgaris subsp. vulgaris]
gi|319657103|gb|ADV58930.1| bolting time control 1 [Beta vulgaris subsp. vulgaris]
Length = 788
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 14 FPAGL-RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH 72
P G +VL+V+ D I+ +LR C YEV A +L N D+V+++V
Sbjct: 91 LPVGSPKVLLVESDDSTRHIVSALLRNCSYEVVGVPNGIEAWKILEDLSNQIDLVLTEVV 150
Query: 73 MPDMDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
+ G L ++ + PVIMMS V+K ++ GA ++L+KPIR EL+N+
Sbjct: 151 TSGLSGIGLLSKIMSHKSCQNTPVIMMSSHDSMGLVLKCLSKGAVDFLVKPIRKNELKNL 210
Query: 130 WQHV 133
WQHV
Sbjct: 211 WQHV 214
>gi|302877614|ref|YP_003846178.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Gallionella capsiferriformans ES-2]
gi|302580403|gb|ADL54414.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Gallionella capsiferriformans ES-2]
Length = 464
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
VL+VDD+P L +LE L K V K + AL +++ N YD+ ++D+ MPD DG
Sbjct: 25 VLLVDDEPDILELLEMTLLKMGLVVDKAACVQEAL--AKLAANRYDLCLTDMRMPDGDGL 82
Query: 80 KLHEQVGL-EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
++ + + +D+PV +++ G ++ + + GA +YL KP+ +++LR + + P+
Sbjct: 83 EVVKYIAAHSLDVPVAVITAHGNMENAITVLKAGAFDYLAKPLSLEQLRTLVKSALSMPQ 142
Query: 139 PFEESD 144
P +D
Sbjct: 143 PSPSAD 148
>gi|456359240|dbj|BAM93449.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359248|dbj|BAM93453.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
Length = 662
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 36 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 95
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 96 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 152
Query: 131 QHV 133
HV
Sbjct: 153 AHV 155
>gi|254473219|ref|ZP_05086617.1| response regulatory protein [Pseudovibrio sp. JE062]
gi|374333100|ref|YP_005083284.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Pseudovibrio sp. FO-BEG1]
gi|211957940|gb|EEA93142.1| response regulatory protein [Pseudovibrio sp. JE062]
gi|359345888|gb|AEV39262.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Pseudovibrio sp. FO-BEG1]
Length = 518
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS-KNGYDIVISDVHMPDMD 77
R+L+VDDDP+ R+LE+ +++ Y C AL++L S ++ D+VI D+ MP++D
Sbjct: 4 RILIVDDDPVQRRLLEEAVKRFGYRSKSCVDGREALEILTGSAQSEIDLVILDLMMPEVD 63
Query: 78 GFK-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
GF+ L E + +PVI+ + +G + V++ + GA ++++KP R + L+
Sbjct: 64 GFQVLKETREAKNAVPVIVQTANGSIETVIEAMRAGAQDFVVKPSRPERLQ 114
>gi|159897796|ref|YP_001544043.1| response regulator receiver sensor signal transduction histidine
kinase [Herpetosiphon aurantiacus DSM 785]
gi|159890835|gb|ABX03915.1| response regulator receiver sensor signal transduction histidine
kinase [Herpetosiphon aurantiacus DSM 785]
Length = 542
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDDD R K LR Y+V +ALD LR +D++++D+ MP+M G
Sbjct: 18 ILVVDDDTSICRYCSKALRNVGYQVVDTTSGLVALDHLR--HQAFDLLLTDIKMPEMSGL 75
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
+L Q L L VI+M+ + + + V G +YL KP I+E+R V Q
Sbjct: 76 ELARQARALNPGLAVIIMTGQTTLETLREAVQQGVTSYLSKPFEIEEMRLTVAQVLHQ 133
>gi|15597882|ref|NP_251376.1| two-component response regulator PfeR [Pseudomonas aeruginosa PAO1]
gi|2500742|sp|Q04803.1|PFER_PSEAE RecName: Full=Transcriptional activator protein PfeR
gi|9948758|gb|AAG06074.1|AE004696_8 two-component response regulator PfeR [Pseudomonas aeruginosa PAO1]
gi|151437|gb|AAA25929.1| putative [Pseudomonas aeruginosa]
Length = 305
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+V+DDP L+ R+ + VT C L+ + +D+V+ D+ +P +DG
Sbjct: 79 RLLLVEDDPRLREDLDAHFRRRGFRVTVCGDGSHGLEA--AGREAFDLVLLDIMLPGLDG 136
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L E + E PV++MS G QD + G T GA +YL KP + EL
Sbjct: 137 LALLESLRREQATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAEL 184
>gi|395652548|ref|ZP_10440398.1| DNA-binding response regulator [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 242
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L ++DDP+ + + L +C ++VT C + L + R +D+V+ D+ +P +DG
Sbjct: 10 RILTIEDDPVLGAYVHEHLGRCGFQVTWCQNGQQGLQLAR--DQAFDVVLMDILLPGLDG 67
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR----NIWQHVA 134
+ + +PVI+MS G D + G GA +YL KP + ELR I + VA
Sbjct: 68 LSILTHLRRSHSIPVILMSALGAEADRVSGFRLGADDYLPKPFSMIELRVRIEAILRRVA 127
Query: 135 QQPKPFEE----SDDSYSV----------NQGNWRTSNRRKDEEEEAEKRDDTSTLKK 178
+P DD +++ +Q +W R + E R+ L K
Sbjct: 128 LDRRPLPSLAPVRDDVHTLRFDDELCDVFHQEHWAGLTRSEYRLLETLHRNSEEVLSK 185
>gi|428203515|ref|YP_007082104.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Pleurocapsa sp. PCC 7327]
gi|427980947|gb|AFY78547.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Pleurocapsa sp. PCC 7327]
Length = 246
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 6/146 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL++ + D+V+ DV MP +DG
Sbjct: 11 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFHQTNP--DLVVLDVMMPKLDG 68
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 69 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 128
Query: 135 QQPKPFEESDDSYSVNQGNWRTSNRR 160
+ P S V T+ R+
Sbjct: 129 KNGTPGIPSSGVIHVGSIKIDTNKRQ 154
>gi|381205544|ref|ZP_09912615.1| ATPase domain-containing protein [SAR324 cluster bacterium JCVI-SC
AAA005]
Length = 919
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 6 SSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
S+V+ + + +L++DDDP+ L IL ML + + T C+ + AL+++ + G+D
Sbjct: 660 SAVSSDLKSRGSISILIIDDDPVNLHILTGMLTETDWTFTCCSSGQEALELMNQT-TGFD 718
Query: 66 IVISDVHMPDMDGFK----LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
+V+ D+ M MDG + L +Q E DLP++ ++ T+++ + GA +YL KPI
Sbjct: 719 LVLLDLMMDGMDGIELCTILRQQFAKE-DLPILFLTALTRTEELTQAFEAGANDYLTKPI 777
Query: 122 RIKELRNIWQHVAQQPKPFEESDDSYSVNQGNWRTSNRRKD 162
+ EL+ A+ E + YS +Q S +D
Sbjct: 778 QKAELK------ARISSQLELAQLRYSTSQAIHEKSKSMRD 812
>gi|315644147|ref|ZP_07897317.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
vortex V453]
gi|315280522|gb|EFU43811.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
vortex V453]
Length = 1048
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 12/146 (8%)
Query: 1 MSPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS 60
M PA+ V + R+L+VDDDP+ L++LE +L Y+VT + L +L
Sbjct: 703 MPPAAKQPVVIENSRDRPRLLIVDDDPVNLQVLEAILPPDEYDVTMATSGKEVLAVLDAQ 762
Query: 61 KNGYDIVISDVHMPDMDGFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYL 117
+ +D+VISD+ MP M G++L ++ +LPV++++ +D+ G GA +Y+
Sbjct: 763 E--WDLVISDIMMPQMSGYELTRRIRERFTLTELPVLLLTARSQPKDIQSGFLAGANDYV 820
Query: 118 LKPI-------RIKELRNIWQHVAQQ 136
KP+ RI+ L I Q V +Q
Sbjct: 821 TKPVEAIEIRSRIEALTTIKQTVREQ 846
>gi|310642219|ref|YP_003946977.1| chemotaxis protein CheY [Paenibacillus polymyxa SC2]
gi|386041177|ref|YP_005960131.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa M1]
gi|309247169|gb|ADO56736.1| Response regulators consisting of a CheY-like receiver domain
protein and a winged-helix DNA-binding domain protein
[Paenibacillus polymyxa SC2]
gi|343097215|emb|CCC85424.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa M1]
Length = 219
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L VDD+P L +L+ +L+K + VT + + +L M +D+++ DV MP+MDGF
Sbjct: 4 LLAVDDEPAVLALLQNILQKDGHVVTVVSTSP---QVLTMQLGAFDLILLDVMMPNMDGF 60
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
L ++ ++D P++ ++ DVM G+ GA +Y++KP ELR
Sbjct: 61 TLCREIRSKVDCPILFLTAKSMENDVMLGLGEGADDYIVKPFGAGELR 108
>gi|456359228|dbj|BAM93443.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359236|dbj|BAM93447.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359238|dbj|BAM93448.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359242|dbj|BAM93450.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359260|dbj|BAM93459.1| pseudo-response regulator [Triticum dicoccoides]
Length = 662
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 36 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 95
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 96 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 152
Query: 131 QHV 133
HV
Sbjct: 153 AHV 155
>gi|456359114|dbj|BAM93386.1| pseudo-response regulator [Triticum monococcum subsp. monococcum]
Length = 662
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 31 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 90
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 91 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 147
Query: 131 QHV 133
HV
Sbjct: 148 AHV 150
>gi|261410004|ref|YP_003246245.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
Y412MC10]
gi|261286467|gb|ACX68438.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
Y412MC10]
Length = 1045
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 72/127 (56%), Gaps = 12/127 (9%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L++DDDP+ L++LE +L YEVT + AL +L + +D+VISD+ MP M G+
Sbjct: 722 LLIIDDDPVNLQVLEAILPPDEYEVTMATSGKEALAVLDAKE--WDLVISDIMMPQMSGY 779
Query: 80 KLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI-------RIKELRNI 129
+L ++ +LPV++++ +D+ G GA +Y+ KP+ RI+ L I
Sbjct: 780 ELTRRIRERFTLTELPVLLLTARSQPKDIQSGFLAGANDYVTKPVEALEIRSRIEALTTI 839
Query: 130 WQHVAQQ 136
Q V +Q
Sbjct: 840 KQTVREQ 846
>gi|399001088|ref|ZP_10703807.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Pseudomonas sp. GM18]
gi|398128545|gb|EJM17932.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Pseudomonas sp. GM18]
Length = 240
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L ++DDP+ + + L +C ++VT C + L + R + +D+V+ D+ +P +DG
Sbjct: 10 RILSIEDDPVLGAYVHEHLGRCGFQVTWCQNGQEGLAIAR--QQAFDVVLMDILLPGLDG 67
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
+ Q+ PV++MS G D + G GA +YL KP + ELR
Sbjct: 68 LAVLTQLRQSHSTPVVLMSALGAEADRISGFRLGADDYLPKPFSMAELR 116
>gi|444305045|ref|ZP_21140832.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Arthrobacter sp. SJCon]
gi|443482580|gb|ELT45488.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Arthrobacter sp. SJCon]
Length = 224
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDDD ++ +LR +E C ALD+ R S+ D+V+ D+ +P +DG
Sbjct: 4 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDVFRSSRP--DLVLLDLMLPGVDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ Q+ E D+P++M++ T DV++G+ GA +Y+ KP + EL
Sbjct: 62 IEVCRQIRAESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAEL 109
>gi|428211280|ref|YP_007084424.1| response regulator containing a CheY-like receiver domain and an
HTH DNA-binding domain [Oscillatoria acuminata PCC 6304]
gi|427999661|gb|AFY80504.1| response regulator containing a CheY-like receiver domain and an
HTH DNA-binding domain [Oscillatoria acuminata PCC 6304]
Length = 215
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L++DDDP + +++ L YEVT AL++L K D++I DV MP+MDG
Sbjct: 11 RLLLIDDDPNLILLVKDYLEFRGYEVTTAENGREALEIL--EKEMPDMIICDVMMPEMDG 68
Query: 79 FKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ EQV + +PV+ +S G +QD +KG+ GA Y++KP +EL
Sbjct: 69 YAFVEQVRKDHRTNWIPVLFLSAKGQSQDRVKGLNTGADVYMVKPFEPEEL 119
>gi|336317084|ref|ZP_08571962.1| response regulator with CheY-like receiver [Rheinheimera sp. A13L]
gi|335878736|gb|EGM76657.1| response regulator with CheY-like receiver [Rheinheimera sp. A13L]
Length = 449
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 12/141 (8%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
G R+L+VDDDP LR+L L Y+V + AE AL +L KN D+V+SD+ MP +
Sbjct: 4 GARLLLVDDDPSLLRLLTLRLEGEGYQVISADCAETALVLL--GKNKVDVVLSDLRMPGL 61
Query: 77 DGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135
DG L +++ LPV++M+ G + + G +L KP+ +LR+I
Sbjct: 62 DGMALFDEIAKRHAGLPVVLMTAHGSIPEAVAATQRGVFGFLTKPLNNNDLRDILAQAVH 121
Query: 136 QPKPFEESDDSYSVNQGNWRT 156
Q S+ ++ WRT
Sbjct: 122 Q---------SHVPSKDEWRT 133
>gi|167031595|ref|YP_001666826.1| two component transcriptional regulator [Pseudomonas putida GB-1]
gi|166858083|gb|ABY96490.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida GB-1]
Length = 230
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+V+DDP L+ LE+ ++V C AL+ ++ S+ +D+V+ D+ +P +DG
Sbjct: 5 LLLVEDDPRLLQDLERHFLNRGFQVHACASGTQALNAIQQSQ--FDLVLLDIMLPGIDGL 62
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L +++ + +PV++MS G QD + G T GA +YL KP + EL
Sbjct: 63 SLLDELRRQQAVPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAEL 109
>gi|456359104|dbj|BAM93381.1| pseudo-response regulator [Triticum monococcum subsp. aegilopoides]
gi|456359106|dbj|BAM93382.1| pseudo-response regulator [Triticum monococcum subsp. aegilopoides]
gi|456359108|dbj|BAM93383.1| pseudo-response regulator [Triticum monococcum subsp. aegilopoides]
gi|456359116|dbj|BAM93387.1| pseudo-response regulator [Triticum monococcum subsp. monococcum]
Length = 662
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 31 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 90
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 91 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 147
Query: 131 QHV 133
HV
Sbjct: 148 AHV 150
>gi|384199038|ref|YP_005584781.1| two-component response regulator [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|320457990|dbj|BAJ68611.1| two-component response regulator [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 245
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 64/109 (58%), Gaps = 5/109 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+L++DDD L +++ L K + VT + A + L+ L NGYD++I D+ MPDMDG
Sbjct: 28 ILMIDDDRPILELVKNGLEKDGHSVTIHTSAAHVPLEGL----NGYDLIILDIMMPDMDG 83
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
F ++ +D P++ ++ +D+ G+ GA +YL KP RI ELR
Sbjct: 84 FTYCGKIRSLVDCPILFLTAKTMERDITSGLGLGADDYLTKPFRIAELR 132
>gi|297819166|ref|XP_002877466.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323304|gb|EFH53725.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 199
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 73/123 (59%), Gaps = 11/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLY--------EVTKCNRAEIALDMLRMSKNGYDIVIS 69
+ V+VVDDD ++L+IL +ML K Y V + + AL L + ++ D++I+
Sbjct: 16 INVMVVDDDHVFLQILARMLEKNKYIDPSVMEITVITVDDPKKALSTLEIQRDNIDLIIT 75
Query: 70 DVHMPDMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
D +MP M+G +L +++ + +LPV++MS D ++ + ++ GA ++ KPI+ +L
Sbjct: 76 DYYMPGMNGVQLKKKITEKFGNLPVLVMSSDTNKEE--ESLSGGAMGFITKPIKPSDLTK 133
Query: 129 IWQ 131
I+Q
Sbjct: 134 IYQ 136
>gi|153871532|ref|ZP_02000680.1| adenylate/guanylate cyclase [Beggiatoa sp. PS]
gi|152071998|gb|EDN69316.1| adenylate/guanylate cyclase [Beggiatoa sp. PS]
Length = 594
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 11/114 (9%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+VL+VDD+ + L+IL + L+K +EV E A+ ++ K DI++ D+ MP MDG
Sbjct: 7 KVLIVDDNSVNLKILSRFLKKAHFEVIMAKNGESAITQVKNLKP--DIILLDIMMPGMDG 64
Query: 79 F------KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
F K +E+ D+PVI M+ T D +KG GA +Y+ KP++++E+
Sbjct: 65 FETCRCLKANEE---SKDIPVIFMTALESTPDKVKGFKIGAIDYITKPVQMEEV 115
>gi|456359204|dbj|BAM93431.1| pseudo-response regulator [Triticum dicoccoides]
Length = 668
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|134102532|ref|YP_001108193.1| two-component system response regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|133915155|emb|CAM05268.1| two-component system, response regulator [Saccharopolyspora
erythraea NRRL 2338]
Length = 247
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLR-MSKNGYDIVI 68
V+D + RVLVVDD+P L +L LR +EV A D LR S+ G DIV+
Sbjct: 7 VADSDTSAARVLVVDDEPNILELLTAALRLSGFEVRG---AATGADALRAASEFGPDIVV 63
Query: 69 SDVHMPDMDGFKLHEQVGLEMDL-PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE-- 125
DV +PD DGF + ++ DL PV+ ++ +D + G+T G +Y+ KP + E
Sbjct: 64 LDVMLPDQDGFSVARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVV 123
Query: 126 --LRNIWQHVAQQPKPFEESD 144
LR I + V +P +E D
Sbjct: 124 LRLRAILRRV--RPAHLDEPD 142
>gi|386826418|ref|ZP_10113525.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
gi|386427302|gb|EIJ41130.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
Length = 1095
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L +L+VDDDPI L++LE L+ Y VT+ ALD + S +++++ D+ MP M
Sbjct: 684 LSILIVDDDPINLQVLENQLKLENYGVTRAANGMAALDAIN-SGTYFNLILLDIMMPRMS 742
Query: 78 GFK----LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
GF+ + E+ G +LP+IM++ D++ G+ GA +YL KP EL
Sbjct: 743 GFEVCRIIREKWGAN-ELPIIMLTAKNQVSDLVDGLQAGANDYLSKPFSKNEL 794
>gi|118638651|gb|ABL09481.1| pseudo-response regulator [Aegilops tauschii]
Length = 661
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 32 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 91
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 92 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 148
Query: 131 QHV 133
HV
Sbjct: 149 AHV 151
>gi|379025682|dbj|BAL63618.1| pseudo-response regulator [Triticum durum]
Length = 668
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|379025488|dbj|BAL63521.1| pseudo-response regulator [Triticum polonicum]
gi|379025734|dbj|BAL63644.1| pseudo-response regulator [Triticum durum]
Length = 668
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP--- 74
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 75 ---DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
D+ G ++ +V D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHEVC--KDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLWA 155
Query: 132 HV 133
HV
Sbjct: 156 HV 157
>gi|456359164|dbj|BAM93411.1| pseudo-response regulator [Triticum urartu]
Length = 662
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 35 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 94
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 95 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 151
Query: 131 QHV 133
HV
Sbjct: 152 AHV 154
>gi|456359146|dbj|BAM93402.1| pseudo-response regulator [Triticum urartu]
gi|456359148|dbj|BAM93403.1| pseudo-response regulator [Triticum urartu]
gi|456359150|dbj|BAM93404.1| pseudo-response regulator [Triticum urartu]
gi|456359152|dbj|BAM93405.1| pseudo-response regulator [Triticum urartu]
gi|456359154|dbj|BAM93406.1| pseudo-response regulator [Triticum urartu]
gi|456359156|dbj|BAM93407.1| pseudo-response regulator [Triticum urartu]
gi|456359158|dbj|BAM93408.1| pseudo-response regulator [Triticum urartu]
gi|456359160|dbj|BAM93409.1| pseudo-response regulator [Triticum urartu]
gi|456359162|dbj|BAM93410.1| pseudo-response regulator [Triticum urartu]
gi|456359166|dbj|BAM93412.1| pseudo-response regulator [Triticum urartu]
gi|456359168|dbj|BAM93413.1| pseudo-response regulator [Triticum urartu]
gi|456359170|dbj|BAM93414.1| pseudo-response regulator [Triticum urartu]
gi|456359172|dbj|BAM93415.1| pseudo-response regulator [Triticum urartu]
gi|456359174|dbj|BAM93416.1| pseudo-response regulator [Triticum urartu]
gi|456359176|dbj|BAM93417.1| pseudo-response regulator [Triticum urartu]
gi|456359178|dbj|BAM93418.1| pseudo-response regulator [Triticum urartu]
gi|456359180|dbj|BAM93419.1| pseudo-response regulator [Triticum urartu]
gi|456359182|dbj|BAM93420.1| pseudo-response regulator [Triticum urartu]
gi|456359184|dbj|BAM93421.1| pseudo-response regulator [Triticum urartu]
gi|456359188|dbj|BAM93423.1| pseudo-response regulator [Triticum urartu]
gi|456359190|dbj|BAM93424.1| pseudo-response regulator [Triticum urartu]
gi|456359192|dbj|BAM93425.1| pseudo-response regulator [Triticum urartu]
Length = 662
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 35 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 94
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 95 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 151
Query: 131 QHV 133
HV
Sbjct: 152 AHV 154
>gi|456359128|dbj|BAM93393.1| pseudo-response regulator [Triticum urartu]
gi|456359130|dbj|BAM93394.1| pseudo-response regulator [Triticum urartu]
gi|456359132|dbj|BAM93395.1| pseudo-response regulator [Triticum urartu]
gi|456359134|dbj|BAM93396.1| pseudo-response regulator [Triticum urartu]
gi|456359136|dbj|BAM93397.1| pseudo-response regulator [Triticum urartu]
gi|456359138|dbj|BAM93398.1| pseudo-response regulator [Triticum urartu]
Length = 665
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|395796689|ref|ZP_10475984.1| DNA-binding response regulator [Pseudomonas sp. Ag1]
gi|421141469|ref|ZP_15601454.1| Two component Transcriptional regulator, Winged helix family
protein [Pseudomonas fluorescens BBc6R8]
gi|395339253|gb|EJF71099.1| DNA-binding response regulator [Pseudomonas sp. Ag1]
gi|404507478|gb|EKA21463.1| Two component Transcriptional regulator, Winged helix family
protein [Pseudomonas fluorescens BBc6R8]
Length = 242
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 15 PAGL---RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
PA L +L ++DDP+ + + L C ++VT C + L M R + +D+V+ D+
Sbjct: 3 PAALGLPSILAIEDDPVLGAYVHEQLGLCGFQVTWCQNGQQGLQMARDQR--FDVVLMDI 60
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR---- 127
+P MDG + + +PVI+MS G D + G GA +YL KP + ELR
Sbjct: 61 LLPGMDGLSVLTHLRQSHSMPVILMSALGAEADRISGFRLGADDYLPKPFSMAELRVRIE 120
Query: 128 NIWQHVAQQPKPF 140
I + VA +P
Sbjct: 121 AILRRVALDRRPL 133
>gi|379025516|dbj|BAL63535.1| pseudo-response regulator [Triticum dicoccoides]
gi|456359206|dbj|BAM93432.1| pseudo-response regulator [Triticum dicoccoides]
Length = 668
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|456359230|dbj|BAM93444.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359232|dbj|BAM93445.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359234|dbj|BAM93446.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
Length = 662
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 36 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 95
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 96 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 152
Query: 131 QHV 133
HV
Sbjct: 153 AHV 155
>gi|456359102|dbj|BAM93380.1| pseudo-response regulator [Triticum monococcum subsp. aegilopoides]
Length = 662
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 31 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 90
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 91 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 147
Query: 131 QHV 133
HV
Sbjct: 148 AHV 150
>gi|428225836|ref|YP_007109933.1| winged helix family two component transcriptional regulator
[Geitlerinema sp. PCC 7407]
gi|427985737|gb|AFY66881.1| two component transcriptional regulator, winged helix family
[Geitlerinema sp. PCC 7407]
Length = 243
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFR--NTAPDLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|343494396|ref|ZP_08732658.1| sensory box sensor histidine kinase/response regulator [Vibrio
nigripulchritudo ATCC 27043]
gi|342825301|gb|EGU59800.1| sensory box sensor histidine kinase/response regulator [Vibrio
nigripulchritudo ATCC 27043]
Length = 1128
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 5/115 (4%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P G ++V DD+P+ L+IL+ LR Y V L++++ K ++++ DV MP
Sbjct: 719 PEGPLIVVADDEPVNLQILDSFLRMEGYRVKAAKDGTETLELVQQEKP--ELLLLDVMMP 776
Query: 75 DMDGFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ G+++ EQV L DL PVIM++ T D +KG GA +YL KP EL
Sbjct: 777 GLSGYQVCEQVRLSYDLSELPVIMLTALSQTNDRIKGFDSGANDYLTKPFNKLEL 831
>gi|313680794|ref|YP_004058533.1| winged helix family two component transcriptional regulator
[Oceanithermus profundus DSM 14977]
gi|313153509|gb|ADR37360.1| two component transcriptional regulator, winged helix family
[Oceanithermus profundus DSM 14977]
Length = 220
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVLVVDDDP LR++E LR Y V E AL+ LRM+ GY V+ D+ +P +DG
Sbjct: 4 RVLVVDDDPNLLRLVEANLRARGYAVDTAASGEAALERLRMA--GYACVLLDLMLPGVDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + D+P+++MS G + ++ + GA +YL+KP + EL
Sbjct: 62 MTVIREARGFCDVPIVVMSALGEEERKVEALDLGADDYLVKPFGVAEL 109
>gi|118638616|gb|ABL09464.1| pseudo-response regulator [Triticum aestivum]
gi|118638620|gb|ABL09466.1| pseudo-response regulator [Triticum aestivum]
gi|118638622|gb|ABL09467.1| pseudo-response regulator [Triticum aestivum]
gi|379025454|dbj|BAL63504.1| pseudo-response regulator [Triticum turgidum]
gi|379025456|dbj|BAL63505.1| pseudo-response regulator [Triticum turgidum]
gi|379025458|dbj|BAL63506.1| pseudo-response regulator [Triticum turgidum]
gi|379025460|dbj|BAL63507.1| pseudo-response regulator [Triticum turgidum]
gi|379025462|dbj|BAL63508.1| pseudo-response regulator [Triticum turgidum]
gi|379025464|dbj|BAL63509.1| pseudo-response regulator [Triticum carthlicum]
gi|379025466|dbj|BAL63510.1| pseudo-response regulator [Triticum carthlicum]
gi|379025468|dbj|BAL63511.1| pseudo-response regulator [Triticum carthlicum]
gi|379025470|dbj|BAL63512.1| pseudo-response regulator [Triticum carthlicum]
gi|379025472|dbj|BAL63513.1| pseudo-response regulator [Triticum carthlicum]
gi|379025474|dbj|BAL63514.1| pseudo-response regulator [Triticum turanicum]
gi|379025476|dbj|BAL63515.1| pseudo-response regulator [Triticum turanicum]
gi|379025478|dbj|BAL63516.1| pseudo-response regulator [Triticum turanicum]
gi|379025482|dbj|BAL63518.1| pseudo-response regulator [Triticum turanicum]
gi|379025490|dbj|BAL63522.1| pseudo-response regulator [Triticum polonicum]
gi|379025492|dbj|BAL63523.1| pseudo-response regulator [Triticum turgidum subsp. turgidum]
gi|379025494|dbj|BAL63524.1| pseudo-response regulator [Triticum turgidum subsp. turgidum]
gi|379025496|dbj|BAL63525.1| pseudo-response regulator [Triticum turgidum subsp. turgidum]
gi|379025498|dbj|BAL63526.1| pseudo-response regulator [Triticum turgidum subsp. turgidum]
gi|379025500|dbj|BAL63527.1| pseudo-response regulator [Triticum turgidum subsp. turgidum]
gi|379025502|dbj|BAL63528.1| pseudo-response regulator [Triticum turgidum subsp. turgidum]
gi|379025512|dbj|BAL63533.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025514|dbj|BAL63534.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025518|dbj|BAL63536.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025528|dbj|BAL63541.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025534|dbj|BAL63544.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025538|dbj|BAL63546.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025540|dbj|BAL63547.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025568|dbj|BAL63561.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025570|dbj|BAL63562.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025572|dbj|BAL63563.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025698|dbj|BAL63626.1| pseudo-response regulator [Triticum durum]
gi|379025700|dbj|BAL63627.1| pseudo-response regulator [Triticum durum]
gi|379025702|dbj|BAL63628.1| pseudo-response regulator [Triticum durum]
gi|379025704|dbj|BAL63629.1| pseudo-response regulator [Triticum durum]
gi|379025706|dbj|BAL63630.1| pseudo-response regulator [Triticum durum]
gi|379025708|dbj|BAL63631.1| pseudo-response regulator [Triticum durum]
gi|379025710|dbj|BAL63632.1| pseudo-response regulator [Triticum durum]
gi|379025712|dbj|BAL63633.1| pseudo-response regulator [Triticum durum]
gi|379025714|dbj|BAL63634.1| pseudo-response regulator [Triticum durum]
gi|379025716|dbj|BAL63635.1| pseudo-response regulator [Triticum durum]
gi|379025718|dbj|BAL63636.1| pseudo-response regulator [Triticum durum]
gi|379025720|dbj|BAL63637.1| pseudo-response regulator [Triticum durum]
gi|379025722|dbj|BAL63638.1| pseudo-response regulator [Triticum durum]
gi|379025724|dbj|BAL63639.1| pseudo-response regulator [Triticum durum]
gi|379025726|dbj|BAL63640.1| pseudo-response regulator [Triticum durum]
gi|379025728|dbj|BAL63641.1| pseudo-response regulator [Triticum durum]
gi|379025730|dbj|BAL63642.1| pseudo-response regulator [Triticum durum]
gi|379025732|dbj|BAL63643.1| pseudo-response regulator [Triticum durum]
gi|395759117|dbj|BAM31255.1| pseudo-response regulator [Triticum aestivum]
gi|395759119|dbj|BAM31256.1| pseudo-response regulator [Triticum aestivum]
gi|456359198|dbj|BAM93428.1| pseudo-response regulator [Triticum turgidum subsp. pyramidale]
Length = 668
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|379025520|dbj|BAL63537.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025522|dbj|BAL63538.1| pseudo-response regulator [Triticum dicoccoides]
gi|456359208|dbj|BAM93433.1| pseudo-response regulator [Triticum dicoccoides]
Length = 668
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|159154683|gb|ABW93669.1| pseudo-response regulator [Triticum turgidum]
gi|379025504|dbj|BAL63529.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025524|dbj|BAL63539.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025530|dbj|BAL63542.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025532|dbj|BAL63543.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025536|dbj|BAL63545.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025544|dbj|BAL63549.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025546|dbj|BAL63550.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025548|dbj|BAL63551.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025550|dbj|BAL63552.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025552|dbj|BAL63553.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025554|dbj|BAL63554.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025556|dbj|BAL63555.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025558|dbj|BAL63556.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025560|dbj|BAL63557.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025562|dbj|BAL63558.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025564|dbj|BAL63559.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025642|dbj|BAL63598.1| pseudo-response regulator [Triticum durum]
gi|379025766|dbj|BAL63660.1| pseudo-response regulator [Triticum durum]
gi|456359070|dbj|BAM93364.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359090|dbj|BAM93374.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359200|dbj|BAM93429.1| pseudo-response regulator [Triticum turgidum subsp. pyramidale]
gi|456359202|dbj|BAM93430.1| pseudo-response regulator [Triticum dicoccoides]
gi|456359210|dbj|BAM93434.1| pseudo-response regulator [Triticum dicoccoides]
gi|456359212|dbj|BAM93435.1| pseudo-response regulator [Triticum dicoccoides]
gi|456359218|dbj|BAM93438.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
Length = 668
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|118638644|gb|ABL09478.1| pseudo-response regulator [Triticum aestivum]
gi|118638646|gb|ABL09479.1| pseudo-response regulator [Triticum aestivum]
gi|118638648|gb|ABL09480.1| pseudo-response regulator [Triticum aestivum]
gi|395759125|dbj|BAM31259.1| pseudo-response regulator [Triticum aestivum]
Length = 660
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 32 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 91
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 92 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 148
Query: 131 QHV 133
HV
Sbjct: 149 AHV 151
>gi|118638642|gb|ABL09477.1| pseudo-response regulator [Triticum aestivum]
Length = 660
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 32 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 91
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 92 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 148
Query: 131 QHV 133
HV
Sbjct: 149 AHV 151
>gi|119468918|ref|ZP_01611943.1| predicted DNA-binding response regulator in two-component system
[Alteromonadales bacterium TW-7]
gi|119447570|gb|EAW28837.1| predicted DNA-binding response regulator in two-component system
[Alteromonadales bacterium TW-7]
Length = 449
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P +VL+VDDD L++L + Y+VT C AL +L+ + +D+VI+D+ M
Sbjct: 6 PHKAKVLLVDDDASLLKLLAIRIESKGYQVTTCESGLAALQILK--SHVFDVVITDLRMD 63
Query: 75 DMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+MDG LH Q+ LPVIMM+ G D ++ G ++ KP+ EL
Sbjct: 64 EMDGMALHRQLQSRYPALPVIMMTAHGSIPDAVEATKQGIFAFITKPVDKDEL 116
>gi|379025526|dbj|BAL63540.1| pseudo-response regulator [Triticum dicoccoides]
Length = 668
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|379025506|dbj|BAL63530.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025508|dbj|BAL63531.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025510|dbj|BAL63532.1| pseudo-response regulator [Triticum dicoccoides]
Length = 668
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|86156932|ref|YP_463717.1| two component sigma54 specific Fis family transcriptional regulator
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85773443|gb|ABC80280.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter dehalogenans 2CP-C]
Length = 443
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVLVVDD+P R +++ML +EV + AL R+ + +D+V++D+ MP +DG
Sbjct: 3 RVLVVDDEPKLGRFVQEMLELDGHEVVRAGGGAEALA--RLGEGAFDVVVTDLRMPQVDG 60
Query: 79 FKLHEQVGLEMDLP-VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
+ P V+MM+ G + ++ + GA +Y+ KP + ELR + +A+Q
Sbjct: 61 LAVLRAARARTPPPEVVMMTAHGSAESAVEAMKAGAADYVTKPFPMDELRLRVRRLAEQ 119
>gi|456359186|dbj|BAM93422.1| pseudo-response regulator [Triticum urartu]
Length = 662
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 35 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 94
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 95 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 151
Query: 131 QHV 133
HV
Sbjct: 152 AHV 154
>gi|379025744|dbj|BAL63649.1| pseudo-response regulator [Triticum durum]
gi|379025748|dbj|BAL63651.1| pseudo-response regulator [Triticum durum]
gi|379025762|dbj|BAL63658.1| pseudo-response regulator [Triticum durum]
gi|379025764|dbj|BAL63659.1| pseudo-response regulator [Triticum durum]
Length = 677
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|456359290|dbj|BAM93474.1| pseudo-response regulator [Triticum turgidum subsp. pyramidale]
Length = 664
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 35 IRVLLVETDDSTQQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 94
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 95 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 151
Query: 131 QHV 133
HV
Sbjct: 152 AHV 154
>gi|456359140|dbj|BAM93399.1| pseudo-response regulator [Triticum urartu]
gi|456359142|dbj|BAM93400.1| pseudo-response regulator [Triticum urartu]
gi|456359144|dbj|BAM93401.1| pseudo-response regulator [Triticum urartu]
Length = 665
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|456359120|dbj|BAM93389.1| pseudo-response regulator [Triticum urartu]
gi|456359122|dbj|BAM93390.1| pseudo-response regulator [Triticum urartu]
gi|456359124|dbj|BAM93391.1| pseudo-response regulator [Triticum urartu]
gi|456359126|dbj|BAM93392.1| pseudo-response regulator [Triticum urartu]
Length = 665
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|379025742|dbj|BAL63648.1| pseudo-response regulator [Triticum durum]
Length = 677
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|379025736|dbj|BAL63645.1| pseudo-response regulator [Triticum durum]
gi|379025738|dbj|BAL63646.1| pseudo-response regulator [Triticum durum]
gi|379025740|dbj|BAL63647.1| pseudo-response regulator [Triticum durum]
gi|379025746|dbj|BAL63650.1| pseudo-response regulator [Triticum durum]
gi|379025750|dbj|BAL63652.1| pseudo-response regulator [Triticum durum]
gi|379025752|dbj|BAL63653.1| pseudo-response regulator [Triticum durum]
gi|379025754|dbj|BAL63654.1| pseudo-response regulator [Triticum durum]
gi|379025756|dbj|BAL63655.1| pseudo-response regulator [Triticum durum]
gi|379025758|dbj|BAL63656.1| pseudo-response regulator [Triticum durum]
gi|379025760|dbj|BAL63657.1| pseudo-response regulator [Triticum durum]
Length = 677
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|337278154|ref|YP_004617625.1| histidine kinase [Ramlibacter tataouinensis TTB310]
gi|334729230|gb|AEG91606.1| candidate histidine kinase, unorthodox [Ramlibacter tataouinensis
TTB310]
Length = 740
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVLV DD P+ R L +LR +EVT C+ E AL++++ + +D V+ D+HMP MD
Sbjct: 483 LRVLVADDHPVNRRYLGAVLRSIGHEVTLCDNGEEALEIVQTDR--FDAVLMDIHMPVMD 540
Query: 78 GFKLHEQV----GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
G + G DLPV+ ++ D ++ V G +L KP+ +++L +
Sbjct: 541 GLAATRAIRALGGRYADLPVVALTADVMPGARLQAVRAGISAFLSKPVGVEQLSAV 596
>gi|242093734|ref|XP_002437357.1| hypothetical protein SORBIDRAFT_10g025490 [Sorghum bicolor]
gi|241915580|gb|EER88724.1| hypothetical protein SORBIDRAFT_10g025490 [Sorghum bicolor]
Length = 111
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 61/92 (66%), Gaps = 6/92 (6%)
Query: 13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLY-EVTKCNRAEIALDMLRMSKNG---YDIVI 68
+F AGLRVL VD+D + L +L+++L+ C Y VT ALDMLR K+G +D+VI
Sbjct: 5 RFRAGLRVLAVDEDRVNLVVLKRVLKVCDYNNVTIVADVSTALDMLRERKDGDDQFDLVI 64
Query: 69 SDVHMPD--MDGFKLHEQVGLEMDLPVIMMSV 98
SD +P+ ++G K E V +EMD+PVI +S+
Sbjct: 65 SDFFIPNNGINGLKFLELVAVEMDIPVIGISL 96
>gi|452748577|ref|ZP_21948355.1| two component transcriptional regulator [Pseudomonas stutzeri NF13]
gi|452007483|gb|EMD99737.1| two component transcriptional regulator [Pseudomonas stutzeri NF13]
Length = 236
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
D R+L V+DDPI+ R L L+ Y V+ C E L R+ +D+++ D+
Sbjct: 3 DTTALATRLLAVEDDPIFARHLVDHLQSIGYSVSHCTDGEEGLS--RVQTEHFDLILMDI 60
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+P G + +Q+ +PVI+MS G QD + G + GA +YL KP + EL
Sbjct: 61 MLPGASGLDVLQQLRRRRGVPVILMSALGNEQDRITGFSQGADDYLPKPFSLLEL 115
>gi|379025778|dbj|BAL63666.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
Length = 664
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 35 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 94
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 95 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 151
Query: 131 QHV 133
HV
Sbjct: 152 AHV 154
>gi|379025940|dbj|BAL63747.1| pseudo-response regulator [Triticum carthlicum]
gi|456359264|dbj|BAM93461.1| pseudo-response regulator [Triticum dicoccoides]
Length = 664
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 35 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 94
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 95 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 151
Query: 131 QHV 133
HV
Sbjct: 152 AHV 154
>gi|379025862|dbj|BAL63708.1| pseudo-response regulator [Triticum dicoccoides]
Length = 664
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 35 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 94
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 95 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 151
Query: 131 QHV 133
HV
Sbjct: 152 AHV 154
>gi|379025838|dbj|BAL63696.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025840|dbj|BAL63697.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025842|dbj|BAL63698.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025844|dbj|BAL63699.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
Length = 661
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 35 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 94
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 95 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 151
Query: 131 QHV 133
HV
Sbjct: 152 AHV 154
>gi|118638628|gb|ABL09470.1| pseudo-response regulator [Triticum aestivum]
gi|118638630|gb|ABL09471.1| pseudo-response regulator [Triticum aestivum]
gi|118638632|gb|ABL09472.1| pseudo-response regulator [Triticum aestivum]
gi|118638634|gb|ABL09473.1| pseudo-response regulator [Triticum aestivum]
gi|118638636|gb|ABL09474.1| pseudo-response regulator [Triticum aestivum]
gi|118638638|gb|ABL09475.1| pseudo-response regulator [Triticum aestivum]
gi|118638640|gb|ABL09476.1| pseudo-response regulator [Triticum aestivum]
gi|159138015|gb|ABW89014.1| pseudo-response regulator [Triticum turgidum]
gi|159138017|gb|ABW89015.1| pseudo-response regulator [Triticum turgidum]
gi|159138019|gb|ABW89016.1| pseudo-response regulator [Triticum turgidum]
gi|159138021|gb|ABW89017.1| pseudo-response regulator [Triticum turgidum]
gi|379025772|dbj|BAL63663.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025774|dbj|BAL63664.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025776|dbj|BAL63665.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025780|dbj|BAL63667.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025782|dbj|BAL63668.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025784|dbj|BAL63669.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025786|dbj|BAL63670.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025788|dbj|BAL63671.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025790|dbj|BAL63672.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025792|dbj|BAL63673.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025794|dbj|BAL63674.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025796|dbj|BAL63675.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025800|dbj|BAL63677.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025802|dbj|BAL63678.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025804|dbj|BAL63679.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025806|dbj|BAL63680.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025808|dbj|BAL63681.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025810|dbj|BAL63682.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025812|dbj|BAL63683.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025814|dbj|BAL63684.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025816|dbj|BAL63685.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025818|dbj|BAL63686.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025820|dbj|BAL63687.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025822|dbj|BAL63688.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025824|dbj|BAL63689.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025826|dbj|BAL63690.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025828|dbj|BAL63691.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025830|dbj|BAL63692.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025832|dbj|BAL63693.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025834|dbj|BAL63694.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025836|dbj|BAL63695.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025850|dbj|BAL63702.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025852|dbj|BAL63703.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025854|dbj|BAL63704.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025864|dbj|BAL63709.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025866|dbj|BAL63710.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025868|dbj|BAL63711.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025870|dbj|BAL63712.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025872|dbj|BAL63713.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025874|dbj|BAL63714.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025876|dbj|BAL63715.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025878|dbj|BAL63716.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025880|dbj|BAL63717.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025882|dbj|BAL63718.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025884|dbj|BAL63719.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025886|dbj|BAL63720.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025888|dbj|BAL63721.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025892|dbj|BAL63723.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025912|dbj|BAL63733.1| pseudo-response regulator [Triticum turgidum subsp. turgidum]
gi|379025914|dbj|BAL63734.1| pseudo-response regulator [Triticum turgidum subsp. turgidum]
gi|379025916|dbj|BAL63735.1| pseudo-response regulator [Triticum turgidum subsp. turgidum]
gi|379025918|dbj|BAL63736.1| pseudo-response regulator [Triticum turgidum subsp. turgidum]
gi|379025920|dbj|BAL63737.1| pseudo-response regulator [Triticum turgidum subsp. turgidum]
gi|379025922|dbj|BAL63738.1| pseudo-response regulator [Triticum turgidum subsp. turgidum]
gi|379025926|dbj|BAL63740.1| pseudo-response regulator [Triticum turgidum]
gi|379025928|dbj|BAL63741.1| pseudo-response regulator [Triticum turgidum]
gi|379025930|dbj|BAL63742.1| pseudo-response regulator [Triticum turgidum]
gi|379025932|dbj|BAL63743.1| pseudo-response regulator [Triticum turgidum]
gi|379025934|dbj|BAL63744.1| pseudo-response regulator [Triticum carthlicum]
gi|379025938|dbj|BAL63746.1| pseudo-response regulator [Triticum carthlicum]
gi|379025942|dbj|BAL63748.1| pseudo-response regulator [Triticum carthlicum]
gi|379025944|dbj|BAL63749.1| pseudo-response regulator [Triticum durum]
gi|379025946|dbj|BAL63750.1| pseudo-response regulator [Triticum durum]
gi|379025948|dbj|BAL63751.1| pseudo-response regulator [Triticum durum]
gi|379025950|dbj|BAL63752.1| pseudo-response regulator [Triticum durum]
gi|379025952|dbj|BAL63753.1| pseudo-response regulator [Triticum durum]
gi|379025954|dbj|BAL63754.1| pseudo-response regulator [Triticum durum]
gi|379025956|dbj|BAL63755.1| pseudo-response regulator [Triticum durum]
gi|379025958|dbj|BAL63756.1| pseudo-response regulator [Triticum durum]
gi|379025960|dbj|BAL63757.1| pseudo-response regulator [Triticum durum]
gi|379025962|dbj|BAL63758.1| pseudo-response regulator [Triticum durum]
gi|379025964|dbj|BAL63759.1| pseudo-response regulator [Triticum durum]
gi|379025966|dbj|BAL63760.1| pseudo-response regulator [Triticum durum]
gi|379025968|dbj|BAL63761.1| pseudo-response regulator [Triticum durum]
gi|379025970|dbj|BAL63762.1| pseudo-response regulator [Triticum durum]
gi|379025972|dbj|BAL63763.1| pseudo-response regulator [Triticum durum]
gi|379025974|dbj|BAL63764.1| pseudo-response regulator [Triticum durum]
gi|379025976|dbj|BAL63765.1| pseudo-response regulator [Triticum durum]
gi|379025978|dbj|BAL63766.1| pseudo-response regulator [Triticum durum]
gi|379025980|dbj|BAL63767.1| pseudo-response regulator [Triticum durum]
gi|379025982|dbj|BAL63768.1| pseudo-response regulator [Triticum durum]
gi|379025984|dbj|BAL63769.1| pseudo-response regulator [Triticum durum]
gi|379025986|dbj|BAL63770.1| pseudo-response regulator [Triticum durum]
gi|379025988|dbj|BAL63771.1| pseudo-response regulator [Triticum durum]
gi|379025990|dbj|BAL63772.1| pseudo-response regulator [Triticum durum]
gi|379025992|dbj|BAL63773.1| pseudo-response regulator [Triticum durum]
gi|379025994|dbj|BAL63774.1| pseudo-response regulator [Triticum durum]
gi|379025996|dbj|BAL63775.1| pseudo-response regulator [Triticum durum]
gi|379025998|dbj|BAL63776.1| pseudo-response regulator [Triticum durum]
gi|379026000|dbj|BAL63777.1| pseudo-response regulator [Triticum durum]
gi|379026002|dbj|BAL63778.1| pseudo-response regulator [Triticum durum]
gi|379026004|dbj|BAL63779.1| pseudo-response regulator [Triticum durum]
gi|379026006|dbj|BAL63780.1| pseudo-response regulator [Triticum durum]
gi|379026008|dbj|BAL63781.1| pseudo-response regulator [Triticum durum]
gi|379026010|dbj|BAL63782.1| pseudo-response regulator [Triticum durum]
gi|379026012|dbj|BAL63783.1| pseudo-response regulator [Triticum durum]
gi|379026062|dbj|BAL63808.1| pseudo-response regulator [Triticum durum]
gi|379026064|dbj|BAL63809.1| pseudo-response regulator [Triticum durum]
gi|379026066|dbj|BAL63810.1| pseudo-response regulator [Triticum durum]
gi|379026068|dbj|BAL63811.1| pseudo-response regulator [Triticum durum]
gi|379026070|dbj|BAL63812.1| pseudo-response regulator [Triticum durum]
gi|379026084|dbj|BAL63819.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|383215300|gb|AFG73164.1| pseudo-response regulator [Triticum aestivum]
gi|395759121|dbj|BAM31257.1| pseudo-response regulator [Triticum aestivum]
gi|395759123|dbj|BAM31258.1| pseudo-response regulator [Triticum aestivum]
gi|456359244|dbj|BAM93451.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359246|dbj|BAM93452.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359270|dbj|BAM93464.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|456359272|dbj|BAM93465.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|456359274|dbj|BAM93466.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|456359276|dbj|BAM93467.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|456359278|dbj|BAM93468.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|456359280|dbj|BAM93469.1| pseudo-response regulator [Triticum ispahanicum]
gi|456359282|dbj|BAM93470.1| pseudo-response regulator [Triticum ispahanicum]
gi|456359284|dbj|BAM93471.1| pseudo-response regulator [Triticum turgidum subsp. paleocolchicum]
gi|456359286|dbj|BAM93472.1| pseudo-response regulator [Triticum turgidum subsp. paleocolchicum]
Length = 664
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 35 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 94
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 95 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 151
Query: 131 QHV 133
HV
Sbjct: 152 AHV 154
>gi|456359266|dbj|BAM93462.1| pseudo-response regulator [Triticum dicoccoides]
Length = 659
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 35 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 94
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 95 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 151
Query: 131 QHV 133
HV
Sbjct: 152 AHV 154
>gi|417926155|ref|ZP_12569564.1| subtilin biosynthesis regulatory protein SpaR [Finegoldia magna
SY403409CC001050417]
gi|341590005|gb|EGS33256.1| subtilin biosynthesis regulatory protein SpaR [Finegoldia magna
SY403409CC001050417]
Length = 220
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
G +LVVDDD ++E L++ + V C A+ + L +S + +D++I DV MPDM
Sbjct: 2 GQNILVVDDDEQTRSVIETSLKRAQFSVYTCASAK---ETLSLSLDQFDLMIFDVMMPDM 58
Query: 77 DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DGF+L V ++D P++ ++ DV +G+ G +Y+ KP EL
Sbjct: 59 DGFELCRNVREKVDCPILFLTAKSTEADVAEGLALGGDDYIRKPFTPLEL 108
>gi|89096703|ref|ZP_01169595.1| response regulator [Bacillus sp. NRRL B-14911]
gi|89088718|gb|EAR67827.1| response regulator [Bacillus sp. NRRL B-14911]
Length = 223
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
++++VVDDD +++ L + Y+V K N E AL +L D+ + DV MP MD
Sbjct: 1 MKIMVVDDDVYIQKLVSIHLSRKGYQVVKANDGEEALKIL--EGMNVDLAVVDVMMPGMD 58
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
GF+L + + + D+PVI+++ G D +G G+ +Y++KP +KEL
Sbjct: 59 GFELTKILSEDYDIPVILLTAKGQLDDKERGFLSGSEDYIVKPFEVKEL 107
>gi|379025890|dbj|BAL63722.1| pseudo-response regulator [Triticum dicoccoides]
Length = 660
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 36 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 95
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 96 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 152
Query: 131 QHV 133
HV
Sbjct: 153 AHV 155
>gi|379025798|dbj|BAL63676.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
Length = 664
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 35 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 94
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 95 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 151
Query: 131 QHV 133
HV
Sbjct: 152 AHV 154
>gi|359690108|ref|ZP_09260109.1| integral membrane sensor hybrid histidine kinase [Leptospira
licerasiae serovar Varillal str. MMD0835]
gi|418748148|ref|ZP_13304440.1| GHKL domain protein [Leptospira licerasiae str. MMD4847]
gi|418758900|ref|ZP_13315081.1| 7TM diverse intracellular signaling domain / histidine kinase A
domain / GHKL domain / response regulator receiver
domain multi-domain protein [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|384114117|gb|EIE00381.1| 7TM diverse intracellular signaling domain / histidine kinase A
domain / GHKL domain / response regulator receiver
domain multi-domain protein [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|404275217|gb|EJZ42531.1| GHKL domain protein [Leptospira licerasiae str. MMD4847]
Length = 1049
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 6 SSVAVSDQ---FPAGLRVLVVDDDPIWLRILEKMLR-KCLYEVTKCNRAEIALDMLRMSK 61
S+ A+ D+ F R+LVVDD+P+ L++++ L + + VT + E AL++L+ K
Sbjct: 693 STAAIQDESSDFEKNARILVVDDEPVNLQVIQNYLSLRNISSVTAKSGME-ALEILQKDK 751
Query: 62 NGYDIVISDVHMPDMDGFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLL 118
+D VI DV MP M G ++ M +LP++M++ +D+M + +GA +YLL
Sbjct: 752 -AFDAVILDVMMPKMSGLDTAREIRKTMSTLELPILMLTAKNQDKDLMAALNNGANDYLL 810
Query: 119 KPIRIKEL 126
KP +EL
Sbjct: 811 KPFDFEEL 818
>gi|356508533|ref|XP_003523010.1| PREDICTED: two-component response regulator-like APRR1-like
[Glycine max]
Length = 560
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D+D + + +L +C Y+VT A +D L DI+++++ +P
Sbjct: 30 VRILLCDNDSKSSQEVFTLLLRCSYQVTSVKSARQVIDALNAEGQHIDIILAELDLPMKK 89
Query: 78 GFKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G K+ + + + + +PVIMMS V+K + GA +YL+KP+R EL N+W H+
Sbjct: 90 GMKMLKYIAQDKEFRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 148
>gi|414153251|ref|ZP_11409578.1| putative DNA-binding response regulator in two-component system
[Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411455633|emb|CCO07481.1| putative DNA-binding response regulator in two-component system
[Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 460
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 15/124 (12%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVT--KCNRAEIALD----MLRMSKNGYDIVISDVHM 73
VLVVDD E+ +R+ LY+V R E A+D + ++ K D++++D+ M
Sbjct: 6 VLVVDD--------EESVRQFLYDVLTDAAYRVETAVDGQECLDKLVKLKPDVLVTDIRM 57
Query: 74 PDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
P+ DG L EQ+ L + PVI+M+ G T+ +K + GA +Y++KP + EL N+ Q
Sbjct: 58 PEKDGLSLLEQIKSLGITTPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDELLNLVQR 117
Query: 133 VAQQ 136
A+Q
Sbjct: 118 AAEQ 121
>gi|379026042|dbj|BAL63798.1| pseudo-response regulator [Triticum durum]
Length = 665
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 36 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 95
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 96 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 152
Query: 131 QHV 133
HV
Sbjct: 153 AHV 155
>gi|379025858|dbj|BAL63706.1| pseudo-response regulator [Triticum dicoccoides]
Length = 665
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 36 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 95
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 96 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 152
Query: 131 QHV 133
HV
Sbjct: 153 AHV 155
>gi|379025856|dbj|BAL63705.1| pseudo-response regulator [Triticum dicoccoides]
gi|379025860|dbj|BAL63707.1| pseudo-response regulator [Triticum dicoccoides]
gi|379026014|dbj|BAL63784.1| pseudo-response regulator [Triticum durum]
gi|379026016|dbj|BAL63785.1| pseudo-response regulator [Triticum durum]
gi|379026018|dbj|BAL63786.1| pseudo-response regulator [Triticum durum]
gi|379026020|dbj|BAL63787.1| pseudo-response regulator [Triticum durum]
gi|379026022|dbj|BAL63788.1| pseudo-response regulator [Triticum durum]
gi|379026024|dbj|BAL63789.1| pseudo-response regulator [Triticum durum]
gi|456359268|dbj|BAM93463.1| pseudo-response regulator [Triticum dicoccoides]
Length = 665
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 36 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 95
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 96 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 152
Query: 131 QHV 133
HV
Sbjct: 153 AHV 155
>gi|379025768|dbj|BAL63661.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025770|dbj|BAL63662.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025894|dbj|BAL63724.1| pseudo-response regulator [Triticum turanicum]
gi|379025896|dbj|BAL63725.1| pseudo-response regulator [Triticum turanicum]
gi|379025898|dbj|BAL63726.1| pseudo-response regulator [Triticum turanicum]
gi|379025900|dbj|BAL63727.1| pseudo-response regulator [Triticum turanicum]
gi|379025902|dbj|BAL63728.1| pseudo-response regulator [Triticum turanicum]
gi|379025910|dbj|BAL63732.1| pseudo-response regulator [Triticum polonicum]
gi|379025936|dbj|BAL63745.1| pseudo-response regulator [Triticum carthlicum]
gi|379026026|dbj|BAL63790.1| pseudo-response regulator [Triticum durum]
gi|379026028|dbj|BAL63791.1| pseudo-response regulator [Triticum durum]
gi|379026030|dbj|BAL63792.1| pseudo-response regulator [Triticum durum]
gi|379026032|dbj|BAL63793.1| pseudo-response regulator [Triticum durum]
gi|379026034|dbj|BAL63794.1| pseudo-response regulator [Triticum durum]
gi|379026036|dbj|BAL63795.1| pseudo-response regulator [Triticum durum]
gi|379026038|dbj|BAL63796.1| pseudo-response regulator [Triticum durum]
gi|379026040|dbj|BAL63797.1| pseudo-response regulator [Triticum durum]
gi|379026044|dbj|BAL63799.1| pseudo-response regulator [Triticum durum]
gi|379026046|dbj|BAL63800.1| pseudo-response regulator [Triticum durum]
gi|379026048|dbj|BAL63801.1| pseudo-response regulator [Triticum durum]
gi|379026050|dbj|BAL63802.1| pseudo-response regulator [Triticum durum]
gi|379026052|dbj|BAL63803.1| pseudo-response regulator [Triticum durum]
gi|379026054|dbj|BAL63804.1| pseudo-response regulator [Triticum durum]
gi|379026056|dbj|BAL63805.1| pseudo-response regulator [Triticum durum]
gi|379026058|dbj|BAL63806.1| pseudo-response regulator [Triticum durum]
gi|379026060|dbj|BAL63807.1| pseudo-response regulator [Triticum durum]
gi|379026072|dbj|BAL63813.1| pseudo-response regulator [Triticum durum]
gi|379026074|dbj|BAL63814.1| pseudo-response regulator [Triticum durum]
gi|379026076|dbj|BAL63815.1| pseudo-response regulator [Triticum durum]
gi|379026078|dbj|BAL63816.1| pseudo-response regulator [Triticum durum]
gi|379026080|dbj|BAL63817.1| pseudo-response regulator [Triticum durum]
gi|456359288|dbj|BAM93473.1| pseudo-response regulator [Triticum turgidum subsp. pyramidale]
Length = 665
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 36 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 95
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 96 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 152
Query: 131 QHV 133
HV
Sbjct: 153 AHV 155
>gi|220030948|gb|ACL78639.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 673
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|456359262|dbj|BAM93460.1| pseudo-response regulator [Triticum dicoccoides]
Length = 665
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 36 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 95
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 96 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 152
Query: 131 QHV 133
HV
Sbjct: 153 AHV 155
>gi|253573996|ref|ZP_04851338.1| two component transcriptional regulator [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251846473|gb|EES74479.1| two component transcriptional regulator [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 221
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+L VDDDP L ++ +L+K + VT + ++L + YD+++ DV MP++DG
Sbjct: 5 HILAVDDDPAVLTLIRNILQKEGHLVTALSSPS---EVLALQLGSYDLILLDVMMPELDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
F L Q+ ++D P++ ++ D+++G++ GA +Y++KP ELR
Sbjct: 62 FTLCRQIRSKVDCPILFLTAKSMENDLVEGLSIGADDYIVKPFGAGELR 110
>gi|220030960|gb|ACL78645.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 672
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030924|gb|ACL78627.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030974|gb|ACL78652.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 672
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLSRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030726|gb|ACL78528.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|383449407|ref|YP_005356128.1| Two-component system response regulatory protein [Flavobacterium
indicum GPTSA100-9]
gi|380501029|emb|CCG52071.1| Two-component system response regulatory protein [Flavobacterium
indicum GPTSA100-9]
Length = 228
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 4/109 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVL ++DD + L + ++VT CN + D K+ +DIV+ D+ +PDMDG
Sbjct: 5 RVLYIEDDETLAFLTADNLEQY-FDVTHCNNGQNGFDTF--CKDTFDIVVLDIMLPDMDG 61
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
F++ E + ++P+I +S +D +KG+ GA +YL+KP I+EL
Sbjct: 62 FEIAENIRKKNQEIPIIFLSAKTMKEDRIKGLKLGADDYLVKPYSIEEL 110
>gi|326522234|dbj|BAK07579.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 522
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + + ++L C Y+VT +++L DI++++V +P
Sbjct: 31 VRILLCDSDPDSSQDVLRLLCNCSYQVTCAKSPRQVINVLNCEGAEIDIILAEVDLPVSK 90
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
FK+ + +G +L P+IMMS V+K + GA YL+KP+R+ EL N+W HV
Sbjct: 91 CFKMLKYIGRNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHV 149
>gi|315655447|ref|ZP_07908347.1| subtilin biosynthesis regulatory protein SpaR [Mobiluncus curtisii
ATCC 51333]
gi|315490387|gb|EFU80012.1| subtilin biosynthesis regulatory protein SpaR [Mobiluncus curtisii
ATCC 51333]
Length = 224
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDD+ ++ K L++ + VT C A+ AL LR+ + +D++I DV M DMDGF
Sbjct: 4 ILVVDDEAAICDVIAKSLKRASFSVTACTSAKEAL-TLRLEQ--FDLMIFDVMMSDMDGF 60
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+L V ++D P++ ++ DV++G+ GA +Y+ KP EL
Sbjct: 61 ELCRNVREKVDCPILFLTAKTTETDVIQGLAMGADDYIRKPFTPSEL 107
>gi|220031158|gb|ACL78744.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220031050|gb|ACL78690.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031058|gb|ACL78694.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031066|gb|ACL78698.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031068|gb|ACL78699.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031070|gb|ACL78700.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031076|gb|ACL78703.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031078|gb|ACL78704.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031094|gb|ACL78712.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031096|gb|ACL78713.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031100|gb|ACL78715.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031102|gb|ACL78716.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031104|gb|ACL78717.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031106|gb|ACL78718.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031108|gb|ACL78719.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031112|gb|ACL78721.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031136|gb|ACL78733.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031146|gb|ACL78738.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031148|gb|ACL78739.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031150|gb|ACL78740.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031156|gb|ACL78743.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031160|gb|ACL78745.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031162|gb|ACL78746.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031180|gb|ACL78755.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031198|gb|ACL78764.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030962|gb|ACL78646.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 676
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|423204498|ref|ZP_17191054.1| hypothetical protein HMPREF1168_00689 [Aeromonas veronii AMC34]
gi|404626852|gb|EKB23660.1| hypothetical protein HMPREF1168_00689 [Aeromonas veronii AMC34]
Length = 231
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD ++L ++L ++VT E L R+++ G+D+V+ DV MP ++G
Sbjct: 3 RILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQ--RLAEQGFDLVLLDVMMPKLNG 60
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
F + ++ D PV+M++ G +QD + G+ GA +YL KP +EL R I +
Sbjct: 61 FAMLTKLRKTHDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQ 120
Query: 135 QQPKPFEESDD 145
P S D
Sbjct: 121 SAPPQRGSSSD 131
>gi|220030954|gb|ACL78642.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 672
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030862|gb|ACL78596.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031064|gb|ACL78697.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 676
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|326531994|dbj|BAK01373.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|364285651|gb|AEW48243.1| timing of cab expression 1 [Hordeum vulgare subsp. vulgare]
Length = 522
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + + ++L C Y+VT +++L DI++++V +P
Sbjct: 31 VRILLCDSDPDSSQDVLRLLCNCSYQVTCAKSPRQVINVLNCEGAEIDIILAEVDLPVSK 90
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
FK+ + +G +L P+IMMS V+K + GA YL+KP+R+ EL N+W HV
Sbjct: 91 CFKMLKYIGRNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHV 149
>gi|220030958|gb|ACL78644.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 676
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030930|gb|ACL78630.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030932|gb|ACL78631.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030946|gb|ACL78638.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030950|gb|ACL78640.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 672
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030890|gb|ACL78610.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 673
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030692|gb|ACL78511.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030696|gb|ACL78513.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030698|gb|ACL78514.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030704|gb|ACL78517.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030708|gb|ACL78519.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030722|gb|ACL78526.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030724|gb|ACL78527.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030728|gb|ACL78529.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030730|gb|ACL78530.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030734|gb|ACL78532.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030736|gb|ACL78533.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030738|gb|ACL78534.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030740|gb|ACL78535.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030742|gb|ACL78536.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030744|gb|ACL78537.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030748|gb|ACL78539.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030750|gb|ACL78540.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030752|gb|ACL78541.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030754|gb|ACL78542.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030758|gb|ACL78544.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030760|gb|ACL78545.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030762|gb|ACL78546.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030764|gb|ACL78547.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030766|gb|ACL78548.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030772|gb|ACL78551.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030774|gb|ACL78552.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030776|gb|ACL78553.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030778|gb|ACL78554.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030782|gb|ACL78556.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030784|gb|ACL78557.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030786|gb|ACL78558.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030788|gb|ACL78559.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030792|gb|ACL78561.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030794|gb|ACL78562.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030796|gb|ACL78563.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030798|gb|ACL78564.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030802|gb|ACL78566.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030804|gb|ACL78567.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030806|gb|ACL78568.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030808|gb|ACL78569.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030810|gb|ACL78570.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030820|gb|ACL78575.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030822|gb|ACL78576.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030824|gb|ACL78577.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030828|gb|ACL78579.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030830|gb|ACL78580.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030832|gb|ACL78581.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030834|gb|ACL78582.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030838|gb|ACL78584.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030846|gb|ACL78588.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030850|gb|ACL78590.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220031040|gb|ACL78685.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 673
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030936|gb|ACL78633.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 675
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|86748554|ref|YP_485050.1| two component, sigma54 specific, Fis family transcriptional
regulator [Rhodopseudomonas palustris HaA2]
gi|86571582|gb|ABD06139.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Rhodopseudomonas palustris HaA2]
Length = 500
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN-GYDIVISDVHMPDMD 77
R+L+ DDDP+ R++E M++KC YE + + A+ +L +D V+ D+ MP +D
Sbjct: 4 RILIADDDPVQRRLVENMVQKCGYEAVLADSGDAAMALLTAPDTAAFDAVVLDLVMPGLD 63
Query: 78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
G + ++ +++PVI+ + G +V+ + GA ++++KP+ I+ L+
Sbjct: 64 GLGVLGKIREAGLNVPVIVQTAHGGIDNVVSAMRAGAHDFVVKPVGIERLQ 114
>gi|381151411|ref|ZP_09863280.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Methylomicrobium album BG8]
gi|380883383|gb|EIC29260.1| response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains [Methylomicrobium album BG8]
Length = 450
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LV+DDDP + L +MLR+ Y VT C + AL+ + K +D+V+SDV MP M G
Sbjct: 7 RLLVIDDDPGVVDYLLEMLRQQGYSVTGCTQTGQALEAI--EKEPFDLVVSDVVMPGMRG 64
Query: 79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+L + + + V++++ G ++ + GAC++L KP RI+EL
Sbjct: 65 LELMAAIHRKRPEQLVLLITAFGSIDLAIQSMRAGACDFLTKPFRIEEL 113
>gi|220030894|gb|ACL78612.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 675
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|146305829|ref|YP_001186294.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
gi|145574030|gb|ABP83562.1| two component transcriptional regulator, winged helix family
[Pseudomonas mendocina ymp]
Length = 232
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+V+DD L ++LR Y + C+ E L+ + D+++ DV +PD++G
Sbjct: 7 RILIVEDDRTLATQLGELLRGQGYATSACHLGEAGLET--ALREAPDLLLLDVMLPDVNG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
F + ++ + PVIM++ G ++ ++G+ HGA +YL KP I EL+ V ++ +
Sbjct: 65 FSVLRRLREQQQTPVIMLTACGAEEERIRGLRHGADDYLPKPFNITELQLRIDAVLRRTR 124
Query: 139 PFEES 143
P E +
Sbjct: 125 PQETA 129
>gi|65329050|gb|AAY42109.1| pseudo-response regulator PPD-H1 [Hordeum vulgare subsp. vulgare]
gi|220030874|gb|ACL78602.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030916|gb|ACL78623.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031014|gb|ACL78672.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|395759127|dbj|BAM31260.1| pseudo-response regulator [Triticum aestivum]
Length = 469
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP--- 74
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M
Sbjct: 32 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 91
Query: 75 ---DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
D+ G ++ +V D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 92 SGIDLLGRIMNHEVC--KDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLWA 149
Query: 132 HV 133
HV
Sbjct: 150 HV 151
>gi|417924814|ref|ZP_12568241.1| subtilin biosynthesis regulatory protein SpaR [Finegoldia magna
SY403409CC001050417]
gi|417924910|ref|ZP_12568337.1| subtilin biosynthesis regulatory protein SpaR [Finegoldia magna
SY403409CC001050417]
gi|341592111|gb|EGS34997.1| subtilin biosynthesis regulatory protein SpaR [Finegoldia magna
SY403409CC001050417]
gi|341592207|gb|EGS35093.1| subtilin biosynthesis regulatory protein SpaR [Finegoldia magna
SY403409CC001050417]
Length = 220
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
G +LVVDDD ++E L++ + V C A+ + L +S + +D++I DV MPDM
Sbjct: 2 GQNILVVDDDEQIRSVIETSLKRAQFSVYTCASAK---ETLSLSLDQFDLMIFDVMMPDM 58
Query: 77 DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DGF+L V ++D P++ ++ DV +G+ G +Y+ KP EL
Sbjct: 59 DGFELCRNVREKVDCPILFLTAKSTEADVAEGLALGGDDYIRKPFTPLEL 108
>gi|220030966|gb|ACL78648.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 673
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030964|gb|ACL78647.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 673
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030926|gb|ACL78628.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030952|gb|ACL78641.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031038|gb|ACL78684.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030918|gb|ACL78624.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030934|gb|ACL78632.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030996|gb|ACL78663.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031044|gb|ACL78687.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031072|gb|ACL78701.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031074|gb|ACL78702.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031080|gb|ACL78705.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031082|gb|ACL78706.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031086|gb|ACL78708.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031088|gb|ACL78709.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031110|gb|ACL78720.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031138|gb|ACL78734.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031140|gb|ACL78735.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031142|gb|ACL78736.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031144|gb|ACL78737.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031164|gb|ACL78747.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031166|gb|ACL78748.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031176|gb|ACL78753.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031178|gb|ACL78754.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031182|gb|ACL78756.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031186|gb|ACL78758.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031188|gb|ACL78759.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030866|gb|ACL78598.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030868|gb|ACL78599.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030872|gb|ACL78601.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030878|gb|ACL78604.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030940|gb|ACL78635.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031062|gb|ACL78696.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|428307458|ref|YP_007144283.1| winged helix family two component transcriptional regulator
[Crinalium epipsammum PCC 9333]
gi|428248993|gb|AFZ14773.1| two component transcriptional regulator, winged helix family
[Crinalium epipsammum PCC 9333]
Length = 241
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R ++ D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRKAEP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|220031172|gb|ACL78751.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030912|gb|ACL78621.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030914|gb|ACL78622.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|351722597|ref|NP_001235202.1| timing of CAB expression 1 [Glycine max]
gi|158999372|gb|ABW87010.1| timing of CAB expression 1 [Glycine max]
Length = 558
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D+D + + +L +C Y+VT A +D L DI+++++ +P
Sbjct: 28 VRILLCDNDSKSSQEVFTLLLRCSYQVTSVKSARQVIDALNAEGQHIDIILAELDLPMKK 87
Query: 78 GFKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G K+ + + + + +PVIMMS V+K + GA +YL+KP+R EL N+W H+
Sbjct: 88 GMKMLKYIARDKEFRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHM 146
>gi|220031046|gb|ACL78688.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031084|gb|ACL78707.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031092|gb|ACL78711.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031116|gb|ACL78723.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031118|gb|ACL78724.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031120|gb|ACL78725.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031122|gb|ACL78726.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031124|gb|ACL78727.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031126|gb|ACL78728.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031128|gb|ACL78729.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031130|gb|ACL78730.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031132|gb|ACL78731.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031134|gb|ACL78732.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031152|gb|ACL78741.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031154|gb|ACL78742.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031196|gb|ACL78763.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031200|gb|ACL78765.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031202|gb|ACL78766.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|364285649|gb|AEW48242.1| timing of cab expression 1 [Hordeum vulgare subsp. vulgare]
Length = 522
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP + + ++L C Y+VT +++L DI++++V +P
Sbjct: 31 VRILLCDSDPDSSQDVLRLLCNCSYQVTCAKSPRQVINVLNCEGAEIDIILAEVDLPVSK 90
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
FK+ + +G +L P+IMMS V+K + GA YL+KP+R+ EL N+W HV
Sbjct: 91 CFKMLKYIGRNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHV 149
>gi|224138036|ref|XP_002326502.1| pseudo response regulator [Populus trichocarpa]
gi|222833824|gb|EEE72301.1| pseudo response regulator [Populus trichocarpa]
Length = 448
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVH 72
FP GLRVL++D+D + ++ L Y V T CN E AL + + + I +V
Sbjct: 14 FPKGLRVLLLDEDSMSAAEIKSKLEAMDYIVYTFCNETE-ALSAISNEPGSFHVAIVEVS 72
Query: 73 MPDMD-GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
M + FK E DLP IM S C +MK + GA +L KP+ +LRNIWQ
Sbjct: 73 MSNSSRSFKFLE---TSKDLPTIMTSSIDCLNTMMKCIALGAVEFLRKPLSEDKLRNIWQ 129
Query: 132 HVAQQ 136
HV +
Sbjct: 130 HVVHK 134
>gi|220031098|gb|ACL78714.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220031042|gb|ACL78686.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220906550|ref|YP_002481861.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7425]
gi|219863161|gb|ACL43500.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7425]
Length = 243
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y V E AL+ R + D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYNVVTAADGEEALETFR--EEVPDLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL + V ++
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR-- 122
Query: 139 PFEESDDSYSVNQGNWRTSNRRKD 162
E++ S + G SN R D
Sbjct: 123 -VEKTSTSGIPSSGVIAVSNLRID 145
>gi|392308986|ref|ZP_10271520.1| two-component response regulator [Pseudoalteromonas citrea NCIMB
1889]
Length = 300
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDDP+ +L+ L + Y++++C AE AL L + N D++ISD+ MP M G
Sbjct: 6 RILIVDDDPLNRVVLDNTLSEE-YQISQCESAEQALTFL--ADNKVDLIISDIRMPGMSG 62
Query: 79 FKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
+ L E++ + +PVI++S D KG+ GA +Y+ KP
Sbjct: 63 YDLLERLKAKQHTYAIPVIIISASNSYNDEAKGLQMGAMDYITKPF 108
>gi|220031090|gb|ACL78710.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031114|gb|ACL78722.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031168|gb|ACL78749.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031170|gb|ACL78750.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031190|gb|ACL78760.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031192|gb|ACL78761.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031194|gb|ACL78762.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030956|gb|ACL78643.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030942|gb|ACL78636.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030886|gb|ACL78608.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030892|gb|ACL78611.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030900|gb|ACL78615.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031030|gb|ACL78680.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031036|gb|ACL78683.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031052|gb|ACL78691.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031056|gb|ACL78693.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 677
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030858|gb|ACL78594.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030672|gb|ACL78501.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030674|gb|ACL78502.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030686|gb|ACL78508.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030688|gb|ACL78509.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030690|gb|ACL78510.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030700|gb|ACL78515.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030702|gb|ACL78516.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030710|gb|ACL78520.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030714|gb|ACL78522.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030716|gb|ACL78523.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030718|gb|ACL78524.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030720|gb|ACL78525.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030732|gb|ACL78531.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030746|gb|ACL78538.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030756|gb|ACL78543.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030768|gb|ACL78549.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030770|gb|ACL78550.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030800|gb|ACL78565.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030812|gb|ACL78571.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030814|gb|ACL78572.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030816|gb|ACL78573.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030818|gb|ACL78574.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030826|gb|ACL78578.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030844|gb|ACL78587.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030852|gb|ACL78591.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|424866709|ref|ZP_18290539.1| Putative response regulator receiver protein [Leptospirillum sp.
Group II 'C75']
gi|206603014|gb|EDZ39494.1| Putative response regulator receiver protein [Leptospirillum sp.
Group II '5-way CG']
gi|387222638|gb|EIJ77061.1| Putative response regulator receiver protein [Leptospirillum sp.
Group II 'C75']
Length = 148
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 82/145 (56%), Gaps = 5/145 (3%)
Query: 2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK 61
SP + +S+ PA +VLVV+DD + L +LE++L++ + V+ E AL+ R+ K
Sbjct: 4 SPKDLAFTLSE--PARPKVLVVEDDVVALDLLEEILKRGGFGVSVAQSCEEALE--RLKK 59
Query: 62 NGYDIVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
+ ++++D+ MP G L + V L +LPV++++ G ++ ++ GA + + KP
Sbjct: 60 DSISLILTDIKMPGKTGMDLLKTVQDLYPELPVVLLTAFGDEHLWVEALSSGAIDLIPKP 119
Query: 121 IRIKELRNIWQHVAQQPKPFEESDD 145
R +E+ +I Q QP+P E D
Sbjct: 120 FRKQEVLDIVQRTLSQPRPPENRGD 144
>gi|304569547|ref|NP_441728.2| OmpR subfamily protein [Synechocystis sp. PCC 6803]
gi|407961633|dbj|BAM54873.1| OmpR subfamily [Bacillus subtilis BEST7613]
Length = 243
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD+ RILE L YEV E A+ S D+V+ DV MP +DG
Sbjct: 7 RILVVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVD 124
Query: 135 QQPKP 139
+ P
Sbjct: 125 KNGMP 129
>gi|336176417|ref|YP_004581792.1| winged helix family two component transcriptional regulator
[Frankia symbiont of Datisca glomerata]
gi|334857397|gb|AEH07871.1| two component transcriptional regulator, winged helix family
[Frankia symbiont of Datisca glomerata]
Length = 290
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 73/125 (58%), Gaps = 8/125 (6%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY-DIVISDVHMPDMD 77
RVLVVDDDP ++++ LR ++V +RA L LRM++ D+V+ D+ +P +D
Sbjct: 54 RVLVVDDDPTVAEVVDRYLRNAGFDV---DRAADGLTALRMAETTVPDLVVLDLMLPGID 110
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHV 133
G ++ ++ + +PVIM++ G D + G+ GA +Y+ KP +EL R++ +
Sbjct: 111 GIEVCRRLREQRPVPVIMLTARGEEADRVAGLETGADDYVTKPFSPRELTLRVRSVLRRA 170
Query: 134 AQQPK 138
A+ P+
Sbjct: 171 AEPPR 175
>gi|220030856|gb|ACL78593.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030870|gb|ACL78600.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030876|gb|ACL78603.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030898|gb|ACL78614.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030938|gb|ACL78634.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030944|gb|ACL78637.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030968|gb|ACL78649.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030980|gb|ACL78655.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030982|gb|ACL78656.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030988|gb|ACL78659.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030990|gb|ACL78660.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030854|gb|ACL78592.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|328953201|ref|YP_004370535.1| multi-sensor signal transduction histidine kinase [Desulfobacca
acetoxidans DSM 11109]
gi|328453525|gb|AEB09354.1| multi-sensor signal transduction histidine kinase [Desulfobacca
acetoxidans DSM 11109]
Length = 698
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P ++LVVDD+ L I+ K+L Y V + AL L S+ YD+V+SDV MP
Sbjct: 2 PKSAKILVVDDESAVLEIIRKILVDRGYIVDVASNGLEALKFLEKSR--YDLVLSDVKMP 59
Query: 75 DMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
++DG +L +Q+GL DL +M+S +D + + GA +Y+ KP+
Sbjct: 60 EIDGLELLQQIGLLYPDLTTVMLSAFATIRDAVAAIKLGAFDYIAKPV 107
>gi|220031034|gb|ACL78682.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031048|gb|ACL78689.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031054|gb|ACL78692.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 677
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030910|gb|ACL78620.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031060|gb|ACL78695.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 677
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030790|gb|ACL78560.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 677
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030970|gb|ACL78650.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 677
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030884|gb|ACL78607.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030908|gb|ACL78619.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 677
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220031018|gb|ACL78674.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031026|gb|ACL78678.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031028|gb|ACL78679.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030888|gb|ACL78609.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 675
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|62868803|gb|AAY17586.1| pseudo-response regulator [Hordeum vulgare subsp. vulgare]
Length = 674
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|359778353|ref|ZP_09281622.1| two-component response regulator MtrA [Arthrobacter globiformis
NBRC 12137]
gi|359304270|dbj|GAB15451.1| two-component response regulator MtrA [Arthrobacter globiformis
NBRC 12137]
Length = 224
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDDD ++ +LR +E C ALD+ R SK D+V+ D+ +P DG
Sbjct: 4 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALDVFRSSKP--DLVLLDLMLPGTDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ Q+ E D+P++M++ T DV++G+ GA +Y+ KP + EL
Sbjct: 62 IEVCRQIRSESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAEL 109
>gi|357500807|ref|XP_003620692.1| Two-component response regulator ARR1 [Medicago truncatula]
gi|355495707|gb|AES76910.1| Two-component response regulator ARR1 [Medicago truncatula]
Length = 211
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 27/166 (16%)
Query: 30 LRILEKML--------RKCLYE---------VTKCNRAEIALDMLRMSKNGYDIVISDVH 72
L I EK+L +KCL + VT + + AL LR SK +D++I + H
Sbjct: 3 LFIAEKLLAMNNKEKCKKCLIQTAKDAHHALVTLFVKKKNALVTLRNSKGLFDLIIGEFH 62
Query: 73 MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
+ M+GF+ +Q+ E LP+I+MS D + + + HGA +Y++KP ++LR+IW++
Sbjct: 63 IFVMNGFEFQKQIQDEFQLPIIVMSKDNTSDIISMTLEHGATHYIVKPFCPEDLRDIWKY 122
Query: 133 V--AQQPKPF--------EESDDSYSVNQGNWRTSNRRKDEEEEAE 168
A++ K F EE + S Q + S R+ + E
Sbjct: 123 AMEAKKNKLFIDSLFAASEEEETSTDQLQTKKKCSKRKSFGNHQGE 168
>gi|220031022|gb|ACL78676.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 677
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030902|gb|ACL78616.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030904|gb|ACL78617.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030922|gb|ACL78626.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030972|gb|ACL78651.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 677
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|65329125|gb|AAY42113.1| pseudo-response regulator PPD-H1 [Hordeum vulgare subsp.
spontaneum]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|65329070|gb|AAY42110.1| pseudo-response regulator PPD-H1 [Hordeum vulgare subsp. vulgare]
gi|65329087|gb|AAY42111.1| pseudo-response regulator PPD-H1 [Hordeum vulgare]
gi|65329107|gb|AAY42112.1| pseudo-response regulator PPD-H1 [Hordeum vulgare subsp. vulgare]
gi|220030976|gb|ACL78653.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030978|gb|ACL78654.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030994|gb|ACL78662.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030706|gb|ACL78518.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220031016|gb|ACL78673.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031020|gb|ACL78675.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031024|gb|ACL78677.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 677
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|15614110|ref|NP_242413.1| hypothetical protein BH1547 [Bacillus halodurans C-125]
gi|10174164|dbj|BAB05266.1| BH1547 [Bacillus halodurans C-125]
Length = 661
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD+P+ L+++ +L YEV E A+ +L + +D+V++DV MP M G
Sbjct: 331 RILVVDDEPVNLKVIASILANEAYEVKTVISGEEAIAVLDTKE--WDLVVADVMMPKMSG 388
Query: 79 FKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++L + + +LP+++++ +D+ G GA +YL KP+ + ELR
Sbjct: 389 YELTKNIRQRFTLTELPILLITARSRPEDIENGFRAGANDYLTKPVNLLELR 440
>gi|405983351|ref|ZP_11041657.1| hypothetical protein HMPREF9451_00747 [Slackia piriformis YIT
12062]
gi|404388957|gb|EJZ84038.1| hypothetical protein HMPREF9451_00747 [Slackia piriformis YIT
12062]
Length = 220
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L +DD+P L +L +L+K +EVT A+ AL+ L +S+ +D+++ DV MP DG
Sbjct: 3 RILAIDDEPTILSLLATILKKDGHEVTAVESADRALE-LNLSR--FDLILCDVMMPGTDG 59
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
F V +D P++ ++ D + G++ GA +Y+ KP ELR
Sbjct: 60 FAFVSVVRDRLDCPIVFLTAKSEENDAVTGLSVGADDYIRKPFGAAELR 108
>gi|374289117|ref|YP_005036202.1| putative two-component response regulator [Bacteriovorax marinus
SJ]
gi|301167658|emb|CBW27241.1| putative two-component response regulator [Bacteriovorax marinus
SJ]
Length = 217
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 83/144 (57%), Gaps = 8/144 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L +L+VDDD I +++EK L+K + T + L++LR +G+D+++ D+ MPD+
Sbjct: 5 LNILIVDDDQITSKLIEKRLKKRGFSTTTVHCGGDCLNLLREKNHGFDLILLDILMPDIT 64
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
G ++ +++ +++LP+IM + T+D++K + GA +Y+ KP+ + +I +
Sbjct: 65 GLEVMKELRETSSQVELPIIMTTSMKETEDIVKALKLGANDYVYKPVNM----DILEARM 120
Query: 135 QQPKPFEESDDSYSVNQGNWRTSN 158
+ +E ++ SV Q T+N
Sbjct: 121 KTHLSIKELNEQ-SVRQSELETAN 143
>gi|456359110|dbj|BAM93384.1| pseudo-response regulator [Triticum monococcum subsp. aegilopoides]
Length = 662
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 31 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 90
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 91 SGIDLLGRIMNHE---VCKDIPVIMMSSHDLMGTVLSCLSNGAADFLAKPIRKNELKNLW 147
Query: 131 QHV 133
HV
Sbjct: 148 AHV 150
>gi|325972397|ref|YP_004248588.1| response regulator receiver modulated metal dependent
phosphohydrolase [Sphaerochaeta globus str. Buddy]
gi|324027635|gb|ADY14394.1| response regulator receiver modulated metal dependent
phosphohydrolase [Sphaerochaeta globus str. Buddy]
Length = 341
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
++ DDDP +IL+ MLRK Y VT C L +LR S+ D+++ D+ MP GF
Sbjct: 5 IVTTDDDPAIRKILQIMLRKEGYMVTACEEGNGLLQLLRQSEESIDLILLDIKMPGFSGF 64
Query: 80 KLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
+L E + +P++M++ MK + GA +YL KP+
Sbjct: 65 ELLEMIRASYPQIPIVMITAFNDLDTGMKAMRMGASDYLAKPV 107
>gi|220030676|gb|ACL78503.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030680|gb|ACL78505.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030694|gb|ACL78512.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030842|gb|ACL78586.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030848|gb|ACL78589.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|153870115|ref|ZP_01999582.1| adenylate/guanylate cyclase [Beggiatoa sp. PS]
gi|152073419|gb|EDN70418.1| adenylate/guanylate cyclase [Beggiatoa sp. PS]
Length = 396
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG--YDIVISDVHMPD 75
VL+VDDDPI L+ILE LR Y +T RA D L+ ++G + I++ D+ MP
Sbjct: 250 FHVLIVDDDPINLQILENQLRVENYAIT---RATTGHDALKALESGIPFAIILLDIMMPK 306
Query: 76 MDGFKLHE---QVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
M GF++ + Q LP+IM++ D+++G+ GA +YL KP EL
Sbjct: 307 MSGFEVCQIIRQTYPANQLPIIMLTAKNQVSDLVQGMQAGANDYLTKPFSKGEL 360
>gi|186686341|ref|YP_001869537.1| two component transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186468793|gb|ACC84594.1| two component transcriptional regulator, winged helix family
[Nostoc punctiforme PCC 73102]
Length = 241
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 16/161 (9%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V + E AL R+S D+++ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTASDGEEALSTFRVSTP--DLIVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE--------LRNIW 130
+ + +++ E D+P+IM++ G D + G+ GA +Y+ KP KE LR +
Sbjct: 65 YGVCQELRKESDVPIIMLTALGNVADRITGLELGADDYMTKPFSPKELEARIACILRRCF 124
Query: 131 QHVAQQPKPFEESDDSYSVNQGNWRT-SNRRKDEEEEAEKR 170
+ P +S + GN + +N+R+ + E R
Sbjct: 125 HKTSVNTTP-----NSTIIRVGNLKIDTNKRQVYKNEQRIR 160
>gi|54307731|ref|YP_128751.1| sensory box sensor histidine kinase/response regulator
[Photobacterium profundum SS9]
gi|46912154|emb|CAG18949.1| hypothetical sensory box sensor histidine kinase/response regulator
[Photobacterium profundum SS9]
Length = 1131
Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P G +LVVDD+P+ L++L LR Y V + AL ++ + +++ D+ MP
Sbjct: 720 PDGELLLVVDDEPVNLQVLNNFLRLEGYRVLTADSGPQALKIIEQQQPA--LILLDIMMP 777
Query: 75 DMDGFK----LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+M G++ L E+ L ++LP+IM+S G QD +KG GA +YL KP +EL
Sbjct: 778 EMSGYEVCHILREEYSL-IELPIIMLSALGQVQDRIKGFESGANDYLTKPFNKEEL 832
>gi|220031174|gb|ACL78752.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030880|gb|ACL78605.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 677
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030678|gb|ACL78504.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030682|gb|ACL78506.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030684|gb|ACL78507.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030712|gb|ACL78521.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030780|gb|ACL78555.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030836|gb|ACL78583.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030840|gb|ACL78585.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|303234315|ref|ZP_07320955.1| putative subtilin biosynthesis regulatory protein SpaR [Finegoldia
magna BVS033A4]
gi|302494568|gb|EFL54334.1| putative subtilin biosynthesis regulatory protein SpaR [Finegoldia
magna BVS033A4]
Length = 220
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
G +LVVDDD ++E L++ + V C A+ + L +S + +D++I DV MPDM
Sbjct: 2 GQNILVVDDDEQIRSVIETSLKRAQFSVYTCASAK---ETLSLSLDQFDLMIFDVMMPDM 58
Query: 77 DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DGF+L V ++D P++ ++ DV +G+ G +Y+ KP EL
Sbjct: 59 DGFELCRNVREKVDCPILFLTAKSTEADVAEGLAIGGDDYIRKPFTPLEL 108
>gi|269925905|ref|YP_003322528.1| response regulator receiver protein [Thermobaculum terrenum ATCC
BAA-798]
gi|269789565|gb|ACZ41706.1| response regulator receiver protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 278
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD+P L +L++ L Y V E ALD++R+ D+VI D+ +P +DG
Sbjct: 3 RILVVDDEPALLDLLKEHLTMEGYTVDTAPSGEYALDLMRIRPP--DLVILDIMLPGIDG 60
Query: 79 FKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+++ ++ + D+PVIM++ T D++ G GA +Y+ KP I EL
Sbjct: 61 YEVCTRMQADPKLQDIPVIMLTAKSLTSDLVAGYESGAEDYVTKPFDIDEL 111
>gi|220030906|gb|ACL78618.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030928|gb|ACL78629.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 677
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|316930963|gb|ADU60098.1| pseudo response regulator 1 [Zea mays]
Length = 515
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D D R + ++L C Y VT +++L DI++++V +P
Sbjct: 24 VRILLCDGDATSPREVLRLLCNCAYHVTCAKSPRQVINILNYEGGEIDIILAEVDLPVSK 83
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
FK+ + + DL P+IMMS V+K + GA YL+KP+R EL N+W HV
Sbjct: 84 CFKMLKYIARNKDLRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRTNELLNLWTHV 142
>gi|220030882|gb|ACL78606.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030896|gb|ACL78613.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220030920|gb|ACL78625.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
gi|220031032|gb|ACL78681.1| pseudo-response receiver [Hordeum vulgare subsp. spontaneum]
Length = 677
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|159154677|gb|ABW93666.1| pseudo-response regulator [Triticum turgidum]
gi|159154679|gb|ABW93667.1| pseudo-response regulator [Triticum turgidum]
gi|159154681|gb|ABW93668.1| pseudo-response regulator [Triticum turgidum]
gi|379025480|dbj|BAL63517.1| pseudo-response regulator [Triticum turanicum]
gi|379025484|dbj|BAL63519.1| pseudo-response regulator [Triticum turanicum]
gi|379025486|dbj|BAL63520.1| pseudo-response regulator [Triticum turanicum]
gi|379025566|dbj|BAL63560.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025644|dbj|BAL63599.1| pseudo-response regulator [Triticum durum]
gi|379025646|dbj|BAL63600.1| pseudo-response regulator [Triticum durum]
gi|379025648|dbj|BAL63601.1| pseudo-response regulator [Triticum durum]
gi|379025650|dbj|BAL63602.1| pseudo-response regulator [Triticum durum]
gi|379025652|dbj|BAL63603.1| pseudo-response regulator [Triticum durum]
gi|379025654|dbj|BAL63604.1| pseudo-response regulator [Triticum durum]
gi|379025656|dbj|BAL63605.1| pseudo-response regulator [Triticum durum]
gi|379025658|dbj|BAL63606.1| pseudo-response regulator [Triticum durum]
gi|379025660|dbj|BAL63607.1| pseudo-response regulator [Triticum durum]
gi|379025662|dbj|BAL63608.1| pseudo-response regulator [Triticum durum]
gi|379025664|dbj|BAL63609.1| pseudo-response regulator [Triticum durum]
gi|379025666|dbj|BAL63610.1| pseudo-response regulator [Triticum durum]
gi|379025668|dbj|BAL63611.1| pseudo-response regulator [Triticum durum]
gi|379025670|dbj|BAL63612.1| pseudo-response regulator [Triticum durum]
gi|379025672|dbj|BAL63613.1| pseudo-response regulator [Triticum durum]
gi|379025674|dbj|BAL63614.1| pseudo-response regulator [Triticum durum]
gi|379025676|dbj|BAL63615.1| pseudo-response regulator [Triticum durum]
gi|379025678|dbj|BAL63616.1| pseudo-response regulator [Triticum durum]
gi|379025680|dbj|BAL63617.1| pseudo-response regulator [Triticum durum]
gi|379025684|dbj|BAL63619.1| pseudo-response regulator [Triticum durum]
gi|379025686|dbj|BAL63620.1| pseudo-response regulator [Triticum durum]
gi|379025688|dbj|BAL63621.1| pseudo-response regulator [Triticum durum]
gi|379025690|dbj|BAL63622.1| pseudo-response regulator [Triticum durum]
gi|379025692|dbj|BAL63623.1| pseudo-response regulator [Triticum durum]
gi|379025694|dbj|BAL63624.1| pseudo-response regulator [Triticum durum]
gi|379025696|dbj|BAL63625.1| pseudo-response regulator [Triticum durum]
gi|379026082|dbj|BAL63818.1| pseudo-response regulator [Triticum durum]
Length = 668
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA +L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAAEFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|399051285|ref|ZP_10741207.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Brevibacillus sp. CF112]
gi|433543115|ref|ZP_20499529.1| two-component response regulator [Brevibacillus agri BAB-2500]
gi|398050862|gb|EJL43207.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Brevibacillus sp. CF112]
gi|432185654|gb|ELK43141.1| two-component response regulator [Brevibacillus agri BAB-2500]
Length = 224
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R++VVDDDP ++ LR +E+ + AL+ +M G D+V+ D+ MP MDG
Sbjct: 3 RIMVVDDDPHIRELVRIFLRNDGFEIVEAENGVEALE--KMESPGADLVVLDIMMPQMDG 60
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++L Q+ D+P++M++ G T +KG G +YL+KP EL
Sbjct: 61 WELCRQLREHYDIPLLMLTAKGETAQKIKGFELGTDDYLVKPFEPAEL 108
>gi|312961644|ref|ZP_07776142.1| two component transcriptional regulator, winged helix family
[Pseudomonas fluorescens WH6]
gi|311283903|gb|EFQ62486.1| two component transcriptional regulator, winged helix family
[Pseudomonas fluorescens WH6]
Length = 242
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L ++DDP+ + + L +C ++VT C L M R +D+V+ D+ +P +DG
Sbjct: 11 ILTIEDDPVLGAYVHEHLGRCGFQVTWCRNGRQGLQMAR--DQAFDVVLMDILLPGLDGL 68
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR----NIWQHVAQ 135
+ + +PVI+MS G D + G GA +YL KP + ELR I + VA
Sbjct: 69 SILTHLRQSHSIPVILMSALGAEADRVSGFRLGADDYLPKPFSMVELRVRIEAILRRVAL 128
Query: 136 QPKPF 140
+P
Sbjct: 129 DRRPL 133
>gi|116671258|ref|YP_832191.1| two component transcriptional regulator [Arthrobacter sp. FB24]
gi|116611367|gb|ABK04091.1| two component transcriptional regulator, winged helix family
[Arthrobacter sp. FB24]
Length = 224
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDDD ++ +LR +E C AL++ R SK D+V+ D+ +P MDG
Sbjct: 4 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKP--DLVLLDLMLPGMDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ Q+ E D P++M++ T DV++G+ GA +Y+ KP + EL
Sbjct: 62 IEVCRQIRAESDSPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAEL 109
>gi|220030864|gb|ACL78597.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030984|gb|ACL78657.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030986|gb|ACL78658.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030992|gb|ACL78661.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220030998|gb|ACL78664.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031000|gb|ACL78665.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031002|gb|ACL78666.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031004|gb|ACL78667.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031006|gb|ACL78668.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031008|gb|ACL78669.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031010|gb|ACL78670.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031012|gb|ACL78671.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|220030860|gb|ACL78595.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
gi|220031184|gb|ACL78757.1| pseudo-response receiver [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 43 IRVLLVETDDSTRQVVAALLRHCMYQVIPVENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 102
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 103 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 159
Query: 131 QHV 133
HV
Sbjct: 160 AHV 162
>gi|379025542|dbj|BAL63548.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
Length = 668
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PV+MMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVVMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|421498478|ref|ZP_15945583.1| transcriptional regulatory protein CpxR [Aeromonas media WS]
gi|407182522|gb|EKE56474.1| transcriptional regulatory protein CpxR [Aeromonas media WS]
Length = 230
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDDD ++L ++L +EVT E L LR+++ +D+V+ DV MP ++G
Sbjct: 3 KILLVDDDLELTQLLTEILTLEGFEVTVAEDGEEGL--LRLAEQAFDLVLLDVMMPRLNG 60
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
F + ++ D PV+M++ G +QD + G+ GA +YL KP +EL R I +
Sbjct: 61 FAMLTRLRKTHDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRT- 119
Query: 135 QQPKPFEESDD 145
Q P P + D
Sbjct: 120 QHPSPQRGASD 130
>gi|218296276|ref|ZP_03497032.1| response regulator receiver modulated metal dependent
phosphohydrolase [Thermus aquaticus Y51MC23]
gi|218243348|gb|EED09878.1| response regulator receiver modulated metal dependent
phosphohydrolase [Thermus aquaticus Y51MC23]
Length = 315
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+VDDDP +L + L EV++ ALD+ + + Y +V++D+HMP MD
Sbjct: 1 MRVLLVDDDPFQRLLLMRALEPLGVEVSEARNGREALDLFK--EKPYHLVLTDLHMPLMD 58
Query: 78 GFKLHEQVGLEMDL-PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
G +L + + L PV +++ DG + +KG+ GA ++L +P+ + ELR
Sbjct: 59 GLELTRAIKAQDPLLPVTLLTADGEKEVKLKGLQAGADDFLNRPVDLAELR 109
>gi|126700939|ref|YP_001089836.1| two-component response regulator [Clostridium difficile 630]
gi|254976918|ref|ZP_05273390.1| two-component response regulator [Clostridium difficile QCD-66c26]
gi|255094303|ref|ZP_05323781.1| two-component response regulator [Clostridium difficile CIP 107932]
gi|255102486|ref|ZP_05331463.1| two-component response regulator [Clostridium difficile QCD-63q42]
gi|255308391|ref|ZP_05352562.1| two-component response regulator [Clostridium difficile ATCC 43255]
gi|255316058|ref|ZP_05357641.1| two-component response regulator [Clostridium difficile QCD-76w55]
gi|255518715|ref|ZP_05386391.1| two-component response regulator [Clostridium difficile QCD-97b34]
gi|255651836|ref|ZP_05398738.1| two-component response regulator [Clostridium difficile QCD-37x79]
gi|260684864|ref|YP_003216149.1| two-component response regulator [Clostridium difficile CD196]
gi|260688522|ref|YP_003219656.1| two-component response regulator [Clostridium difficile R20291]
gi|306521624|ref|ZP_07407971.1| two-component response regulator [Clostridium difficile QCD-32g58]
gi|384362532|ref|YP_006200384.1| two-component response regulator [Clostridium difficile BI1]
gi|423090370|ref|ZP_17078674.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
difficile 70-100-2010]
gi|115252376|emb|CAJ70217.1| Two-component response regulator [Clostridium difficile 630]
gi|260211027|emb|CBA66352.1| two-component response regulator [Clostridium difficile CD196]
gi|260214539|emb|CBE07065.1| two-component response regulator [Clostridium difficile R20291]
gi|357556679|gb|EHJ38264.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
difficile 70-100-2010]
Length = 219
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 74/121 (61%), Gaps = 4/121 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ L+++E +L++ +EV + E A++M N ++++I DV MP MDG
Sbjct: 3 KILVVDDELDMLKLIENVLKRDGHEVKVISDVEKAMNM---DFNYFNLIILDVMMPKMDG 59
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR-NIWQHVAQQP 137
F++ + + ++D P++ ++ D+M G+ GA +Y+ KP + ELR I H+ ++
Sbjct: 60 FEVCKTIRNKVDCPILFLTAKNMESDIMYGLGIGADDYITKPFGVGELRARITAHLRRES 119
Query: 138 K 138
+
Sbjct: 120 R 120
>gi|163847093|ref|YP_001635137.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|163668382|gb|ABY34748.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
Length = 245
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQ P R+LV DDDP R+++ L YE T AL+ + YD++ DV
Sbjct: 13 DQPPPKRRILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAF--ERETYDLIFLDV 70
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
MP +DGF E++ + D+P+++++ T D+++ GA Y+ KP ++ E
Sbjct: 71 MMPFVDGFDACERIRAKSDVPIVIITAREGTDDIVQDFRRGADEYITKPFKVAEF 125
>gi|51891888|ref|YP_074579.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
gi|51855577|dbj|BAD39735.1| two-component response regulator, probably involved in phosphate
sensing [Symbiobacterium thermophilum IAM 14863]
Length = 235
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG-YDIVISDVH 72
FP R+LVVDD+P L ++ LR+ +EV + E D LR+++ D+VI DV
Sbjct: 2 FPVPERILVVDDEPSILELVAYNLRRAGFEVLTADNGE---DGLRIAREEEIDLVILDVM 58
Query: 73 MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
+P +DGF++ + +LPV+M++ G D + G GA +Y+ KP +EL +
Sbjct: 59 LPGIDGFEVLRALRRHSELPVLMLTARGEEIDRVVGFEIGADDYVTKPFSPRELTGRVKA 118
Query: 133 VAQQPKPFEESDDSYSVNQG 152
+ ++ + E D ++ G
Sbjct: 119 ILRRARRSAEPQDQDTLVLG 138
>gi|251790598|ref|YP_003005319.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Dickeya zeae Ech1591]
gi|247539219|gb|ACT07840.1| histidine kinase [Dickeya zeae Ech1591]
Length = 955
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ +LVVDD PI R+L L Y+V N ALD+L +KN DIV++DV+MP+MD
Sbjct: 829 IHLLVVDDHPINRRLLADQLGSLGYQVITANDGLDALDVL--AKNPVDIVLTDVNMPNMD 886
Query: 78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR---NIWQHV 133
G++ +Q+ + LPVI ++ + ++ + + G N L KP+ + L+ + + H+
Sbjct: 887 GYRFTQQLREMGQTLPVIGVTANALAEERQRCLQAGMDNCLSKPVTLDTLQQSLSYYSHL 946
Query: 134 AQQPK 138
+Q K
Sbjct: 947 VRQGK 951
>gi|443322742|ref|ZP_21051758.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Gloeocapsa sp. PCC 73106]
gi|442787495|gb|ELR97212.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Gloeocapsa sp. PCC 73106]
Length = 244
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L YEV E AL + + D+V+ DV MP +DG
Sbjct: 9 KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALAVFHETHP--DLVVLDVMMPKLDG 66
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 67 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVD 126
Query: 135 QQPKP 139
+ P
Sbjct: 127 KNGNP 131
>gi|431796669|ref|YP_007223573.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Echinicola vietnamensis DSM 17526]
gi|430787434|gb|AGA77563.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Echinicola vietnamensis DSM 17526]
Length = 233
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVV+DDP IL++ L YE T C E + + K YD+ I D+ MP DG
Sbjct: 5 RLLVVEDDPNLGDILQEYLTMKGYETTLCRDGEEGWNNFKKGK--YDLAILDIMMPKKDG 62
Query: 79 FKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
F L + + +E DLP+I ++ DV++G+ GA +Y+ KP ++EL
Sbjct: 63 FTLGKDMKKIEDDLPIIYLTAKNMKDDVIEGLKIGADDYITKPFSMEEL 111
>gi|428212246|ref|YP_007085390.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Oscillatoria acuminata PCC 6304]
gi|428000627|gb|AFY81470.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Oscillatoria acuminata PCC 6304]
Length = 242
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRTENP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL + V ++
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR-- 122
Query: 139 PFEESDDSYSVNQGNWRTSNRRKD 162
E++ S + G +N R D
Sbjct: 123 -VEKTGASGIPSSGVIHVANIRID 145
>gi|381161480|ref|ZP_09870710.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Saccharomonospora azurea NA-128]
gi|379253385|gb|EHY87311.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Saccharomonospora azurea NA-128]
Length = 257
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P R+L+++DDP LE L + + V E LD LR D+V+ D+ +P
Sbjct: 32 PTMSRILLIEDDPAVREGLELALSRQGHTVDAVESGEQGLDRLRTDPP--DVVVLDLMLP 89
Query: 75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI--RIKE--LRNIW 130
MDGF++ + G D+P+IM++ G DV+ G+ GA +Y++KP+ R+ E +R +
Sbjct: 90 GMDGFEVCRRAGATTDVPIIMLTARGDDMDVVAGLEAGADDYVVKPVQPRVLEARIRAVL 149
Query: 131 QHVAQQPKPFE 141
+ + ++ E
Sbjct: 150 RRIGREQSDLE 160
>gi|334116724|ref|ZP_08490816.1| two component transcriptional regulator, winged helix family
[Microcoleus vaginatus FGP-2]
gi|428316884|ref|YP_007114766.1| two component transcriptional regulator, winged helix family
[Oscillatoria nigro-viridis PCC 7112]
gi|333461544|gb|EGK90149.1| two component transcriptional regulator, winged helix family
[Microcoleus vaginatus FGP-2]
gi|428240564|gb|AFZ06350.1| two component transcriptional regulator, winged helix family
[Oscillatoria nigro-viridis PCC 7112]
Length = 247
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R ++ D+V+ DV MP +DG
Sbjct: 11 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRNTEP--DLVVLDVMMPKLDG 68
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 69 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 116
>gi|315125214|ref|YP_004067217.1| sensor protein [Pseudoalteromonas sp. SM9913]
gi|315013727|gb|ADT67065.1| sensor protein [Pseudoalteromonas sp. SM9913]
Length = 896
Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 78/143 (54%), Gaps = 14/143 (9%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLR----M 59
A S + VS+ ++L+V+D+P+ ++ +L TK A+IA D L +
Sbjct: 760 ALSKIDVSNISLEKYQLLIVEDNPLNQHVVSAILE------TKHGIADIANDGLEAIAML 813
Query: 60 SKNGYDIVISDVHMPDMDGFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNY 116
S+ YD+V+ D+ MP+MDG + + + E+ DLP+I +S + QD K + G +Y
Sbjct: 814 SEKNYDLVLMDIQMPNMDGLQATKVIRNELGFFDLPIIGLSANAHEQDAQKAIASGMDSY 873
Query: 117 LLKPIRIKEL-RNIWQHVAQQPK 138
+ KPI EL + +W ++++ K
Sbjct: 874 MTKPIEADELFKTLWYYLSRLDK 896
>gi|325276623|ref|ZP_08142359.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
gi|324098241|gb|EGB96351.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
Length = 230
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+ +DDP + LE+ ++V C AL +R S+ +D+V+ D+ +P +DG
Sbjct: 5 LLLAEDDPRLRQDLERHFLNRGFQVLACANGSQALSAIRQSR--FDLVLLDIMLPGIDGL 62
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L +++ + +PV++MS G QD ++G T GA +YL KP + EL
Sbjct: 63 SLLDELRHQQAVPVMLMSALGAEQDRIRGFTRGADDYLPKPFSLAEL 109
>gi|226532758|ref|NP_001147823.1| LOC100281433 [Zea mays]
gi|195613968|gb|ACG28814.1| two-component response regulator-like PRR1 [Zea mays]
Length = 515
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D D R + ++L C Y VT +++L DI++++V +P
Sbjct: 24 VRILLCDGDATSSREVLRLLCNCAYHVTCAKSPRQVVNILNYEGGEIDIILAEVDLPVSK 83
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
FK+ + + DL P+IMMS V+K + GA YL+KP+R EL N+W HV
Sbjct: 84 CFKMLKYIARNKDLRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRTNELLNLWTHV 142
>gi|397911978|gb|AFO69282.1| pseudo-response regulator 1, partial [Hordeum vulgare]
Length = 491
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+ D DP + + ++L C Y+VT +++L DI++++V +P
Sbjct: 1 RILLCDSDPDSSQDVLRLLCNCSYQVTCAKSPRQVINVLNCEGAEIDIILAEVDLPVSKC 60
Query: 79 FKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
FK+ + +G +L P+IMMS V+K + GA YL+KP+R+ EL N+W HV
Sbjct: 61 FKMLKYIGRNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHV 118
>gi|407796717|ref|ZP_11143669.1| DNA-binding response regulator [Salimicrobium sp. MJ3]
gi|407018871|gb|EKE31591.1| DNA-binding response regulator [Salimicrobium sp. MJ3]
Length = 221
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD L +LE LR YE+TK + AL MLR + +D+V+ D+ M MDG
Sbjct: 3 KLLVVDDQERMLNLLELYLRPHGYEITKVPSGQEALRMLR--ERPFDLVLLDIMMEGMDG 60
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
F+ ++ DLPV+M++ +DV+KG+ GA +Y+ KP
Sbjct: 61 FETCRRLRTFSDLPVLMLTAKDQKEDVVKGLKTGADDYVTKPF 103
>gi|406884359|gb|EKD31782.1| Sensor protein [uncultured bacterium]
Length = 374
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 14/141 (9%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDD LR+L+ +LR+ Y+V +AL + K D+V+ D+ MPD+DGF
Sbjct: 14 ILIVDDVLANLRLLDHILREKGYKVRPVTNGTLALQVAEKEKP--DLVLLDIMMPDLDGF 71
Query: 80 ----KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR-------N 128
+ E L D+P+I +S T+D++K +T G +Y+ KP + +E+R N
Sbjct: 72 EVCRRFKENPKLS-DVPIIFISALNDTKDIVKALTSGGADYITKPFKAEEVRVRVATHLN 130
Query: 129 IWQHVAQQPKPFEESDDSYSV 149
I+ + K + D +S+
Sbjct: 131 IYAQKKELQKLNAQKDKFFSI 151
>gi|238785704|ref|ZP_04629679.1| Sensor kinase protein rcsC [Yersinia bercovieri ATCC 43970]
gi|238713389|gb|EEQ05426.1| Sensor kinase protein rcsC [Yersinia bercovieri ATCC 43970]
Length = 965
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
A L++LVVDD PI R+L L Y+V N AL +L S N DIV++DV+MP+
Sbjct: 841 ADLQILVVDDHPINRRLLADQLTALGYQVMTANDGLDALAVL--SANSVDIVLTDVNMPN 898
Query: 76 MDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
MDG++L +++ L PVI ++ + + + + G N L KP+ + LR + ++ +
Sbjct: 899 MDGYRLTQRLRQLNHHFPVIGVTANALAESKQRCIEAGMDNCLSKPVTLDTLRQMLRYYS 958
Query: 135 QQPK 138
+ +
Sbjct: 959 DKVR 962
>gi|427724291|ref|YP_007071568.1| LuxR family two component transcriptional regulator [Leptolyngbya
sp. PCC 7376]
gi|427356011|gb|AFY38734.1| two component transcriptional regulator, LuxR family [Leptolyngbya
sp. PCC 7376]
Length = 221
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 5/111 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVLVVDDDPI +IL+ L +C Y+V ++AL + K D+++SDV+MP M+G
Sbjct: 3 RVLVVDDDPILRKILQNFLAQCGYQVEVAVSGDMALQI--WEKYQPDVIVSDVNMPSMNG 60
Query: 79 FKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ +++ +P I +S +D +KG + G +YL KP ++EL
Sbjct: 61 LEFCQRLRATPSGQLVPFIFLSGQDELEDRLKGHSSGGDDYLTKPFEMQEL 111
>gi|149923176|ref|ZP_01911589.1| EAL domain/GGDEF domain protein [Plesiocystis pacifica SIR-1]
gi|149815950|gb|EDM75466.1| EAL domain/GGDEF domain protein [Plesiocystis pacifica SIR-1]
Length = 402
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVLV DD+P + LE+ L +E + + A L S+ +D++++D+ MPD+DG
Sbjct: 17 RVLVADDEPQLRKTLERALDFAGFEAVVVHDGKAAERAL--SETNFDVILTDIGMPDLDG 74
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
+L V ++D+PVI+M+ + + K V GA Y++KP R++E I + VA+
Sbjct: 75 IELLRLVRAKDLDVPVILMTGNPDYESAAKAVELGAMKYVVKPFRVQE---IIEQVAEAE 131
Query: 138 K 138
K
Sbjct: 132 K 132
>gi|392311019|ref|ZP_10273553.1| response regulator in two-component regulatory system
[Pseudoalteromonas citrea NCIMB 1889]
Length = 436
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 6/135 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDDD ++ +L L Y + RA AL +L+ D+VI+D+ M MDGF
Sbjct: 6 ILLVDDDQAFIELLAMRLESNNYHTLRAYRATQALKILQ--SESIDLVITDLKMAHMDGF 63
Query: 80 KLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV---AQ 135
+L E++ + +PVIMM+ G D + + G N++ KPI + L + +
Sbjct: 64 ELFEKIKSDHFAMPVIMMTAHGSIPDAVDAIEQGFLNFISKPIDSQTLLHTIEKALFSTT 123
Query: 136 QPKPFEESDDSYSVN 150
+P+P +S++ + ++
Sbjct: 124 KPQPSLQSNNYFGIS 138
>gi|34495927|ref|NP_900142.1| two-component response regulator [Chromobacterium violaceum ATCC
12472]
gi|34101782|gb|AAQ58150.1| probable two-component response regulator [Chromobacterium
violaceum ATCC 12472]
Length = 297
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDD+P L ++ ++L+ YE + EIA D+L Y V+ D MP M G
Sbjct: 4 KLLLVDDEPFNLELMAELLQDAGYETRQAENGEIAWDILSQEGEQYSTVLLDKMMPGMSG 63
Query: 79 F----KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
F K+ + LE LPVIM + G V +G+ GA YL KP
Sbjct: 64 FDVLKKIKAEPRLEF-LPVIMQTAMGAAASVQEGLAAGAFYYLTKPF 109
>gi|225027357|ref|ZP_03716549.1| hypothetical protein EUBHAL_01613 [Eubacterium hallii DSM 3353]
gi|224955359|gb|EEG36568.1| response regulator receiver domain protein [Eubacterium hallii DSM
3353]
Length = 250
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 9/130 (6%)
Query: 3 PASSSVAVSDQFPAG----LRVLVVDDDPIWLRILEKMLRKCLYEVTK-CNRAEIALDML 57
PA + A+ + G +L++DD+ L +++ LRK + VT + A++ LD L
Sbjct: 14 PALGACAILKRTTKGGNNMAAILMIDDERAILELVKNGLRKDGHFVTTYTSAAQVPLDKL 73
Query: 58 RMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117
N YD++I D+ MPD+DGF +++ +D P++ ++ D+ G+ GA +YL
Sbjct: 74 ----NRYDLIILDIMMPDVDGFSYCDKIRSLVDCPILFLTAKTMEHDITFGLGLGADDYL 129
Query: 118 LKPIRIKELR 127
KP RI ELR
Sbjct: 130 TKPFRIAELR 139
>gi|172035594|ref|YP_001802095.1| two-component response regulator [Cyanothece sp. ATCC 51142]
gi|354554841|ref|ZP_08974144.1| two component transcriptional regulator, LuxR family [Cyanothece
sp. ATCC 51472]
gi|171697048|gb|ACB50029.1| two-component response regulator [Cyanothece sp. ATCC 51142]
gi|353552995|gb|EHC22388.1| two component transcriptional regulator, LuxR family [Cyanothece
sp. ATCC 51472]
Length = 219
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 5/110 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDDDP + +++ L YEVT + AL++L +K D++I DV MP+MDG+
Sbjct: 15 LLLVDDDPNLVLLVKDYLEFQGYEVTTAENGKEALEVL--TKQIPDMIICDVMMPEMDGY 72
Query: 80 KLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L E+V + +PV+ +S G +QD +KG+ GA Y++KP +EL
Sbjct: 73 SLIEKVRQDARTSWVPVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEEL 122
>gi|411118817|ref|ZP_11391197.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Oscillatoriales cyanobacterium
JSC-12]
gi|410710680|gb|EKQ68187.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Oscillatoriales cyanobacterium
JSC-12]
Length = 245
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R + D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRNADP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|417629485|ref|ZP_12279722.1| sensor kinase protein rcsC [Escherichia coli STEC_MHI813]
gi|345372232|gb|EGX04196.1| sensor kinase protein rcsC [Escherichia coli STEC_MHI813]
Length = 949
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 5 SSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY 64
S+ +AVSD + +LVVDD PI R+L L Y+ N AL++L SKN
Sbjct: 814 STDIAVSDN--DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNHI 869
Query: 65 DIVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
DIV+SDV+MP+MDG++L +++ L + LPVI ++ + ++ + + G + L KP+ +
Sbjct: 870 DIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929
Query: 124 KELRNIWQHVAQQPKPFEES 143
++ A++ + ES
Sbjct: 930 DVIKQTLTVYAERVRKSRES 949
>gi|374299128|ref|YP_005050767.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio africanus str. Walvis Bay]
gi|332552064|gb|EGJ49108.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio africanus str. Walvis Bay]
Length = 462
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDDD L +L+ L Y AE L++L + D+VISD+ MP M G
Sbjct: 12 ILVVDDDESILEVLDARLSAGGYATLSARSAEKGLELL--ERTPVDLVISDMRMPGMGGK 69
Query: 80 KLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L E+V E +LPVIM++ G D + V GA +Y+ KP +EL
Sbjct: 70 GLLEKVATERPNLPVIMLTAYGTIPDAVASVKTGAVDYMTKPFEGEEL 117
>gi|323388709|gb|ADX60159.1| pseudoARR-B transcription factor [Zea mays]
gi|413923083|gb|AFW63015.1| two-component response regulator-like PRR1 [Zea mays]
Length = 515
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D D R + ++L C Y VT +++L DI++++V +P
Sbjct: 24 VRILLCDGDATSSREVLRLLCNCSYHVTCAKSPRQVINILNYEGGEIDIILAEVDLPVSK 83
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
FK+ + + DL P+IMMS V+K + GA YL+KP+R EL N+W HV
Sbjct: 84 CFKMLKYIARNKDLRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRTNELLNLWTHV 142
>gi|22299907|ref|NP_683154.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
gi|22296092|dbj|BAC09916.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
Length = 251
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 5/146 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y V E AL R + D+V+ DV MP +DG
Sbjct: 11 KILVVDDEASIRRILETRLSMIGYTVVTAADGEEALTKFRQEQP--DLVVLDVMMPKLDG 68
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL + V ++ +
Sbjct: 69 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIE 128
Query: 139 PFEESD--DSYSVNQGNWRT-SNRRK 161
S S + GN R +N+R+
Sbjct: 129 KTSTSGIPSSGVIQVGNIRIDTNKRQ 154
>gi|386772821|ref|ZP_10095199.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Brachybacterium paraconglomeratum
LC44]
Length = 234
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 8/152 (5%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+V+DD L + L + Y VT+ +R AL + + D+VI D+ +PD+DG
Sbjct: 6 RLLLVEDDSAIAEPLSRALDREGYTVTRASRGMDALGIA-AGPDPIDLVILDLGLPDLDG 64
Query: 79 FKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135
++ ++ GLE P+++++ D + G+ GA +Y+ KP R+ EL+ + + +
Sbjct: 65 LEVARRLRKGGLES--PILILTARADEVDAVVGLDAGADDYVTKPFRLGELQARIRALMR 122
Query: 136 QPKPFEESDDSYSVNQGNWRTSNRR--KDEEE 165
+ + EES D+Y VN S RR D EE
Sbjct: 123 RSQATEESGDNYDVNGVTLDVSARRAYADGEE 154
>gi|224284346|gb|ACN39908.1| unknown [Picea sitchensis]
Length = 206
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
Query: 13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH 72
+FP GL VLVVD DP L ++ L Y VT R+E A+ L ++ + + + +
Sbjct: 13 KFPKGLHVLVVDKDPATLHDIKAKLEARRYRVTTFERSEDAVSALTNPESSFHVAL--IE 70
Query: 73 MPD----MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
D +DGF + + + ++P IMMS T+ +++ GA L KP+ +L+N
Sbjct: 71 QADFGERLDGFDILDAENRK-NIPTIMMSNTDNTEVMLRAFALGAVEILQKPLSDDKLKN 129
Query: 129 IWQHVAQQ--PKPFEESDDSYSV 149
+WQH ++ E +DDS +V
Sbjct: 130 VWQHAVRKALATAIEPTDDSQNV 152
>gi|403382341|ref|ZP_10924398.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
JC66]
Length = 1041
Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 5/110 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDD+P L++L ML+ Y V + ALD++ K D++I D+ MP M G+
Sbjct: 713 ILVVDDEPANLKVLIIMLQSLHYSVIAVGSGQEALDVITTEK--VDLLILDLMMPHMTGY 770
Query: 80 KLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ + V + DL PVI+++ G D++ GA +YL KP+ +KEL
Sbjct: 771 EVCKTVRQDYDLVELPVIILTASGQLSDLVASFQFGANDYLQKPVNLKEL 820
>gi|255573419|ref|XP_002527635.1| transcription factor, putative [Ricinus communis]
gi|223532940|gb|EEF34706.1| transcription factor, putative [Ricinus communis]
Length = 478
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVH 72
FP GLRVL++++D I ++ L Y V+ CN E AL + + + I +V
Sbjct: 14 FPKGLRVLLLEEDSISAEEIKSKLEAMDYIVSLFCNENE-ALSAISDKPESFHVAIVEVS 72
Query: 73 MPDMDG-FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
+ +G FK E DLP IM S C +MK + GA +L KP+ ++LRNIWQ
Sbjct: 73 TSNSNGNFKFLETA---KDLPTIMTSNIHCLSTMMKCIALGAVEFLRKPLSEEKLRNIWQ 129
Query: 132 HVAQQ 136
HV +
Sbjct: 130 HVVHK 134
>gi|239906625|ref|YP_002953366.1| NtrC family two-component response regulator [Desulfovibrio
magneticus RS-1]
gi|239796491|dbj|BAH75480.1| putative NtrC family two-component response regulator
[Desulfovibrio magneticus RS-1]
Length = 460
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDDDP L +LE L Y+V AL++L S+ +VISD+ MP MDG
Sbjct: 12 ILVVDDDPHILEVLEVRLVSAGYDVVPAANGLEALEVL--SRQPVRLVISDMRMPGMDGM 69
Query: 80 KLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ E++ + LP+I ++ G ++ + HGA +YL KP +EL
Sbjct: 70 RMLEEMERRGIKLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQEL 117
>gi|363898544|ref|ZP_09325067.1| hypothetical protein HMPREF9625_00084 [Oribacterium sp. ACB1]
gi|395208096|ref|ZP_10397433.1| response regulator receiver domain protein [Oribacterium sp. ACB8]
gi|361961011|gb|EHL14241.1| hypothetical protein HMPREF9625_00084 [Oribacterium sp. ACB1]
gi|394706304|gb|EJF13823.1| response regulator receiver domain protein [Oribacterium sp. ACB8]
Length = 244
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 10/147 (6%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD ++ L K + T E AL + K G D++I D+ +P +DG
Sbjct: 6 RILIVDDDSSIAELISLYLEKECFSTTIAEDGEEALSL--YEKEGADLLILDLMLPGIDG 63
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
+++ ++ D+P+IM+S G T D + G+ GA +Y+LKP KEL + V ++ +
Sbjct: 64 YEVCRRIRASSDVPIIMLSAKGETFDKVLGLELGADDYILKPFDTKELVARVKAVLRRFQ 123
Query: 139 PFEESDDSYSVNQGNWRTSNRRKDEEE 165
P QG++ + EE+
Sbjct: 124 P--------GRKQGSYELTESADSEEQ 142
>gi|307129983|ref|YP_003881999.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Dickeya dadantii 3937]
gi|306527512|gb|ADM97442.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Dickeya dadantii 3937]
Length = 951
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+LVVDD PI R+L L Y+V N ALD+L +KN DI+++DV+MP+MD
Sbjct: 825 IRLLVVDDHPINRRLLADQLGSLGYQVITANDGLDALDVL--AKNPVDIILTDVNMPNMD 882
Query: 78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
G++ +++ +E LPVI ++ + ++ + + G N L KP+ + L+
Sbjct: 883 GYRFTQRLREMEQTLPVIGVTANALAEERQRCLQAGMDNCLSKPVTLDTLQ 933
>gi|197120954|ref|YP_002132905.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K]
gi|196170803|gb|ACG71776.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter sp. K]
Length = 446
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVLVVDD+P R +++ML +EV + AL R+ + +D+V++D+ MP +DG
Sbjct: 3 RVLVVDDEPKLGRFVQEMLELDGHEVVRAGGGVEALA--RLGEGAFDVVVTDLRMPQVDG 60
Query: 79 FKLHEQVGLEMDLP-VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
+ P V+MM+ G + ++ + GA +Y+ KP + ELR + +A+Q
Sbjct: 61 LAVLRAARARTPPPEVVMMTAHGSAESAVEAMKAGAADYVTKPFPMDELRLRVRRLAEQ 119
>gi|456359250|dbj|BAM93454.1| pseudo-response regulator [Triticum timopheevii subsp. timopheevii]
gi|456359252|dbj|BAM93455.1| pseudo-response regulator [Triticum timopheevii subsp. timopheevii]
gi|456359254|dbj|BAM93456.1| pseudo-response regulator [Triticum timopheevii subsp. timopheevii]
gi|456359256|dbj|BAM93457.1| pseudo-response regulator [Triticum timopheevii subsp. timopheevii]
gi|456359258|dbj|BAM93458.1| pseudo-response regulator [Triticum timopheevii subsp. timopheevii]
Length = 331
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP--- 74
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M
Sbjct: 36 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 95
Query: 75 ---DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
D+ G ++ +V D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 96 SGIDLLGRIMNHEVC--KDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLWA 153
Query: 132 HV 133
HV
Sbjct: 154 HV 155
>gi|402300581|ref|ZP_10820067.1| DNA-binding response regulator [Bacillus alcalophilus ATCC 27647]
gi|401724276|gb|EJS97652.1| DNA-binding response regulator [Bacillus alcalophilus ATCC 27647]
Length = 225
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDDD +++ + L + Y + E+AL +L + Y +V+ DV MP MDG+
Sbjct: 4 ILIVDDDKHLRQMVSQYLEENGYRTGQAENGEVALHLL--EQKTYQLVVIDVMMPIMDGY 61
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+L +Q+ ++PVIM++ D KG G +YL+KP +KEL
Sbjct: 62 ELVKQLRHHQNIPVIMLTAKSQLHDKEKGFALGTDDYLVKPFELKEL 108
>gi|326334181|ref|ZP_08200404.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
Broad-1]
gi|325947972|gb|EGD40089.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
Broad-1]
Length = 235
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
PA +VLVVDDD +L +LR+ ++ R ++AL K D+V+ D+ +P
Sbjct: 10 PAKGKVLVVDDDASLSEMLAIVLRQEGFDSQLVARGDLALPAFHSYKP--DVVLLDLMLP 67
Query: 75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
MDG ++ +Q+ E +P++M++ G T DV+ G+ GA +Y++KP + KEL
Sbjct: 68 GMDGIEVCKQIRKESGVPIVMLTAKGDTVDVVVGLESGADDYVVKPFKPKEL 119
>gi|336251307|ref|YP_004595017.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Enterobacter aerogenes KCTC 2190]
gi|334737363|gb|AEG99738.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Enterobacter aerogenes KCTC 2190]
Length = 950
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDD PI R+L L Y+ N AL++L SK DIV+SDV+MP+MDG+
Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCVTANDGVDALNVL--SKQHIDIVLSDVNMPNMDGY 884
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
+L +++ LEM LPVI ++ + ++ + + G + L KP+ + L++ A Q +
Sbjct: 885 RLTQRIRQLEMTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDILKHTLATYAAQVR 944
>gi|169828266|ref|YP_001698424.1| ethylene receptor [Lysinibacillus sphaericus C3-41]
gi|168992754|gb|ACA40294.1| Ethylene receptor [Lysinibacillus sphaericus C3-41]
Length = 1015
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD+PI LR++E +L Y++ AL ++ + +D+VISDV MP M G
Sbjct: 683 RILVVDDEPINLRVVETILANEPYDIVTVTSGIEALVCIQ--SHEWDLVISDVMMPKMSG 740
Query: 79 FKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
++L + + DLPV++++ QD+ G GA +Y+ KP+ ELR+
Sbjct: 741 YELVRLIRKQFSITDLPVLLLTARSQPQDLENGFLAGANDYVTKPVDALELRS 793
>gi|423304372|ref|ZP_17282371.1| hypothetical protein HMPREF1072_01311 [Bacteroides uniformis
CL03T00C23]
gi|423310514|ref|ZP_17288498.1| hypothetical protein HMPREF1073_03248 [Bacteroides uniformis
CL03T12C37]
gi|392681685|gb|EIY75042.1| hypothetical protein HMPREF1073_03248 [Bacteroides uniformis
CL03T12C37]
gi|392684701|gb|EIY78024.1| hypothetical protein HMPREF1072_01311 [Bacteroides uniformis
CL03T00C23]
Length = 1355
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
V+V+DDDP L + ++ + Y V N A+ ALD L + D++ISDV MPD+DG
Sbjct: 1094 VMVIDDDPSMLWFVSEIFTE-KYNVLSFNNAQKALDSLEQRQP--DLIISDVMMPDIDGL 1150
Query: 80 KLH---EQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
+Q L +P+I++S D +KG+ GA Y+ KP +K L + H+ ++
Sbjct: 1151 SFTSTIKQHKLWSHIPLILLSALHHEDDQVKGLESGADAYVTKPFNVKYLEKMVYHLIRR 1210
Query: 137 PKPFEESDDSYSVNQGNWRT-SNRRKDEEEEAEK 169
+ +E S +++ W+ S K+E+E EK
Sbjct: 1211 EENLKEYYSS-ALSTFTWKEGSCLHKEEQEFLEK 1243
>gi|242062346|ref|XP_002452462.1| hypothetical protein SORBIDRAFT_04g026190 [Sorghum bicolor]
gi|241932293|gb|EES05438.1| hypothetical protein SORBIDRAFT_04g026190 [Sorghum bicolor]
Length = 524
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D D R + ++L C Y VT +++L DI++++V +P
Sbjct: 34 VRILLCDGDATSSREVLRLLCNCSYHVTCAKSPRQVINILNYEGGEIDIILAEVDLPVSK 93
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
FK+ + + DL P+IMMS V+K + GA YL+KP+R EL N+W HV
Sbjct: 94 CFKMLKYIARNKDLRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRTNELLNLWTHV 152
>gi|114571083|ref|YP_757763.1| two component sigma54 specific Fis family transcriptional regulator
[Maricaulis maris MCS10]
gi|114341545|gb|ABI66825.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Maricaulis maris MCS10]
Length = 487
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
VL+VDDDP R+L+ ++ K Y E ALD R+++ G D+++ D+ MP MDG
Sbjct: 5 VLIVDDDPTQRRLLQAVIEKQGYRAETAESGEAALD--RVAEPGIDVMLLDLIMPGMDGM 62
Query: 80 KLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
+ E + + DLPVI+++ G + V+ + GA ++ +KP
Sbjct: 63 ETLEALKRKQPDLPVIVLTASGGIETVVAAMRAGAVDFFVKP 104
>gi|386010194|ref|YP_005928471.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
gi|313496899|gb|ADR58265.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
Length = 230
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+ +DDP L+ LE+ R ++V C AL+ ++ S+ +++V+ D+ +P +DG
Sbjct: 5 LLLAEDDPRLLQDLERHFRNRGFQVHACASGTQALNAIQQSQ--FELVLLDIMLPGIDGL 62
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L + + + +PV++MS G QD + G T GA +YL KP + EL
Sbjct: 63 SLLDALRRQQAVPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAEL 109
>gi|220915652|ref|YP_002490956.1| two component sigma-54 specific Fis family transcriptional
regulator [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953506|gb|ACL63890.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter dehalogenans 2CP-1]
Length = 443
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVLVVDD+P R +++ML +EV + AL R+ + +D+V++D+ MP +DG
Sbjct: 3 RVLVVDDEPKLGRFVQEMLELDGHEVVRAGGGVEALA--RLGEGAFDVVVTDLRMPQVDG 60
Query: 79 FKLHEQVGLEMDLP-VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
+ P V+MM+ G + ++ + GA +Y+ KP + ELR + +A+Q
Sbjct: 61 LAVLRAARARTPPPEVVMMTAHGSAESAVEAMKAGAADYVTKPFPMDELRLRVRRLAEQ 119
>gi|81300262|ref|YP_400470.1| two component transcriptional regulator [Synechococcus elongatus
PCC 7942]
gi|81169143|gb|ABB57483.1| two component transcriptional regulator, winged helix family
[Synechococcus elongatus PCC 7942]
Length = 244
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L YEV E AL R + D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLAMIGYEVVTAADGEEALITFRNATP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|319956676|ref|YP_004167939.1| response regulator receiver and hpt phospho transfer protein
[Nitratifractor salsuginis DSM 16511]
gi|319419080|gb|ADV46190.1| response regulator receiver and Hpt phospho transfer protein
[Nitratifractor salsuginis DSM 16511]
Length = 370
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
G R+L+V+D+P+ ++++ K+L E+ + AL+ LR Y++V+ DVHMP
Sbjct: 112 TGRRLLIVEDNPVNMKLILKLLEGSGLEIETAENGQKALEKLRAPDARYEMVLMDVHMPV 171
Query: 76 MDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
MDG + Q+ + D+PVI ++ +V + + G YL KP+ + +L + ++
Sbjct: 172 MDGLECTRQIRQDPQLKDIPVIALTASTQKDEVERILESGMNGYLDKPLVLGKLYSAFKI 231
Query: 133 VAQQPKPFEESDDSYSVNQG 152
Q KP ++SD +G
Sbjct: 232 FLTQ-KPKQKSDRVMIAGEG 250
>gi|270295055|ref|ZP_06201256.1| two-component system sensor kinase/response regulator [Bacteroides
sp. D20]
gi|270274302|gb|EFA20163.1| two-component system sensor kinase/response regulator [Bacteroides
sp. D20]
Length = 1326
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
V+V+DDDP L + ++ + Y V N A+ ALD L + D++ISDV MPD+DG
Sbjct: 1065 VMVIDDDPSMLWFVSEIFTE-KYNVLSFNNAQKALDSLEQRQP--DLIISDVMMPDIDGL 1121
Query: 80 KLH---EQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
+Q L +P+I++S D +KG+ GA Y+ KP +K L + H+ ++
Sbjct: 1122 SFTSTIKQHKLWSHIPLILLSALHHEDDQVKGLESGADAYVTKPFNVKYLEKMVYHLIRR 1181
Query: 137 PKPFEESDDSYSVNQGNWRT-SNRRKDEEEEAEK 169
+ +E S +++ W+ S K+E+E EK
Sbjct: 1182 EENLKEYYSS-ALSTFTWKEGSCLHKEEQEFLEK 1214
>gi|160887786|ref|ZP_02068789.1| hypothetical protein BACUNI_00189 [Bacteroides uniformis ATCC 8492]
gi|156862728|gb|EDO56159.1| response regulator receiver domain protein [Bacteroides uniformis
ATCC 8492]
Length = 1355
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
V+V+DDDP L + ++ + Y V N A+ ALD L + D++ISDV MPD+DG
Sbjct: 1094 VMVIDDDPSMLWFVSEIFTE-KYNVLSFNNAQKALDSLEQRQP--DLIISDVMMPDIDGL 1150
Query: 80 KLH---EQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
+Q L +P+I++S D +KG+ GA Y+ KP +K L + H+ ++
Sbjct: 1151 SFTSTIKQHKLWSHIPLILLSALHHEDDQVKGLESGADAYVTKPFNVKYLEKMVYHLIRR 1210
Query: 137 PKPFEESDDSYSVNQGNWRT-SNRRKDEEEEAEK 169
+ +E S +++ W+ S K+E+E EK
Sbjct: 1211 EENLKEYYSS-ALSTFTWKEGSCLHKEEQEFLEK 1243
>gi|444377709|ref|ZP_21176918.1| Chitin catabolic cascade sensor histidine kinase ChiS [Enterovibrio
sp. AK16]
gi|443678293|gb|ELT84965.1| Chitin catabolic cascade sensor histidine kinase ChiS [Enterovibrio
sp. AK16]
Length = 1125
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P G +LVVDD+P+ L++L LR Y V A++ + M K +++ DV MP
Sbjct: 714 PDGPLILVVDDEPVNLQVLNNFLRLEGYRVKAVENGRQAIESVTMEKPS--LMLLDVMMP 771
Query: 75 DMDGFK----LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ G++ L E+ DLP+IM+S G QD +KG GA +YL KP EL
Sbjct: 772 ELSGYEVCSHLRERYS-RADLPIIMLSALGQVQDKVKGFDAGANDYLTKPFNKDEL 826
>gi|357007929|ref|ZP_09072928.1| two component transcriptional regulator [Paenibacillus elgii B69]
Length = 224
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 80/147 (54%), Gaps = 14/147 (9%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R++VVDDDP +++ LR+ + V + + ALD L K D+VI D+ MP MDG
Sbjct: 3 RIMVVDDDPHIRELVKVCLRQEGFTVHEAAHGQEALDKLESFKA--DLVILDIMMPHMDG 60
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP-------IRIKELRNIWQ 131
++L Q+ DLP++M++ G T+ ++KG G +YL+KP +R+K L ++
Sbjct: 61 WELCRQLRQLYDLPLLMLTAIGETKQIVKGFELGTDDYLVKPFEPAELIVRVKALLKRYR 120
Query: 132 HVAQQPKPFEE---SDDSY--SVNQGN 153
+ Q E + +Y SV QGN
Sbjct: 121 IASSQTLQVGELTMNRLTYELSVGQGN 147
>gi|374311111|ref|YP_005057541.1| multi-sensor hybrid histidine kinase [Granulicella mallensis
MP5ACTX8]
gi|358753121|gb|AEU36511.1| multi-sensor hybrid histidine kinase [Granulicella mallensis
MP5ACTX8]
Length = 931
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS-KNG--YDI 66
V D+ G++VL+VDD+ RILE +L + T + E AL L + ++G YD+
Sbjct: 524 VQDKALNGVKVLIVDDNRTNRRILEGLLTRWGMVPTVVSGGEEALAKLHAAVQSGVPYDL 583
Query: 67 VISDVHMPDMDGFKLHEQVGLEMDL--PVIMMSVDGCTQ-DVMKGVTHGACNYLLKPIRI 123
V++D+ MP+MDGF L E + + D+ IMM G + D + G YLLKP+R
Sbjct: 584 VLTDMQMPNMDGFGLVENIKQKADISTATIMMLTSGSKRGDTARCAELGIAAYLLKPVRQ 643
Query: 124 KELRNIWQHVAQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAE 168
ELR V Q + E +GN T + ++E A+
Sbjct: 644 VELRQAILRVLQAKEQHGE--------EGNMVTQSTLREELSSAK 680
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 7/138 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L +L+ +D+ I ++ +++L K ++V+ + AL L K+ +D+V+ DV MP+MD
Sbjct: 682 LNILLAEDNAINQKLAKRLLEKRGHKVSVAENGKEALAALE--KSSFDLVLMDVQMPEMD 739
Query: 78 GFK----LHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
G + L E+ L PV+ M+ D + + G YL KPI + L + +
Sbjct: 740 GLEATRTLREREKLTGFHCPVVAMTALAMKGDQERCLEAGMDGYLSKPISSQALDAMLEG 799
Query: 133 VAQQPKPFEESDDSYSVN 150
P +S S +
Sbjct: 800 YTASIAPLSTQSESESAD 817
>gi|423083275|ref|ZP_17071844.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
difficile 002-P50-2011]
gi|423085928|ref|ZP_17074363.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
difficile 050-P50-2011]
gi|357546125|gb|EHJ28075.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
difficile 002-P50-2011]
gi|357548319|gb|EHJ30185.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
difficile 050-P50-2011]
Length = 219
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ L+++E +L++ +EV + E A++M N ++++I DV MP MDG
Sbjct: 3 KILVVDDELDMLKLIENVLKRDGHEVKVISDVEKAMNM---DFNYFNLIILDVMMPKMDG 59
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR-NIWQHVAQQP 137
F++ + + ++D P++ ++ D+M G GA +Y+ KP + ELR I H+ ++
Sbjct: 60 FEVCKTIRNKVDCPILFLTAKNMESDIMYGFGIGADDYITKPFGVGELRARITAHLRRES 119
Query: 138 K 138
+
Sbjct: 120 R 120
>gi|444379964|ref|ZP_21179132.1| Response regulator [Enterovibrio sp. AK16]
gi|443675924|gb|ELT82637.1| Response regulator [Enterovibrio sp. AK16]
Length = 351
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY-DIVISDVHMPD 75
G VL+V+DDP++ RI+ LRK E AE LD L+ + G D+++SD+ MP
Sbjct: 4 GKEVLIVEDDPVFSRIIGSFLRK---EGCVVREAENGLDGLKALREGIPDLLLSDLSMPV 60
Query: 76 MDGFKLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
M G + E+V +E LPVI++S G DV + + G ++L+KPI
Sbjct: 61 MTGLEFVEEVSMEYPMLPVIVISGTGGMSDVAQALRFGVKDFLIKPI 107
>gi|427401686|ref|ZP_18892758.1| diguanylate cyclase (GGDEF) domain-containing protein [Massilia
timonae CCUG 45783]
gi|425719398|gb|EKU82331.1| diguanylate cyclase (GGDEF) domain-containing protein [Massilia
timonae CCUG 45783]
Length = 452
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 68/110 (61%), Gaps = 5/110 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDD P L +L+ M+R+ Y+ N + ALD+ ++ D+++ DV +PD+DG
Sbjct: 17 ILIVDDAPDSLGLLQDMMRQQGYQTFVANTGKRALDI--ATRIQPDLILLDVILPDLDGL 74
Query: 80 KLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ ++ + D +PVI +S G T+D++ G GA +Y+ KP+R+ E+
Sbjct: 75 EICRRLKRQPDTAHIPVIFVSACGETEDIVAGFDTGAADYIAKPVRMAEV 124
>gi|255657277|ref|ZP_05402686.1| two-component response regulator [Clostridium difficile QCD-23m63]
gi|296451868|ref|ZP_06893586.1| response regulator [Clostridium difficile NAP08]
gi|296879736|ref|ZP_06903711.1| response regulator [Clostridium difficile NAP07]
gi|296259285|gb|EFH06162.1| response regulator [Clostridium difficile NAP08]
gi|296429325|gb|EFH15197.1| response regulator [Clostridium difficile NAP07]
Length = 219
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 74/121 (61%), Gaps = 4/121 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LV+DD+ L+++E +L++ +EV + E A+D+ N ++++I DV MP MDG
Sbjct: 3 KILVIDDELDVLKLIENVLKRDGHEVKVISDIENAMDI---EFNSFNLIILDVMMPKMDG 59
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR-NIWQHVAQQP 137
F++ + + ++D P++ ++ D+M G+ GA +Y+ KP + ELR I H+ ++
Sbjct: 60 FEVCKAIRNKVDCPILFLTAKNMESDIMYGLGIGADDYITKPFGVGELRARITAHLRRES 119
Query: 138 K 138
+
Sbjct: 120 R 120
>gi|333894409|ref|YP_004468284.1| PAS signal transduction protein [Alteromonas sp. SN2]
gi|332994427|gb|AEF04482.1| PAS signal transduction protein [Alteromonas sp. SN2]
Length = 1107
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
AG L+VDDD I L I +++L VT E AL + + N +D+V+ D +P+
Sbjct: 798 AGKHALLVDDDSISLEIAQQILLDAGLSVTTATSGEQALAL--GNSNDFDVVLLDCILPN 855
Query: 76 MDGFKLHEQVGL--EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ-- 131
M GF + E++ P+I +S DG +++ K + G C +LLKP E+ ++
Sbjct: 856 MSGFTVAEELNNLNGWHCPIIALSADGSSENKQKASSVGMCAHLLKPASAAEILHVIDIN 915
Query: 132 -HVAQQPKPFEESDDSY 147
H +SDD Y
Sbjct: 916 IHTTANLNNMHDSDDPY 932
>gi|290973017|ref|XP_002669246.1| 3',5'-cyclic-nucleotide phosphodiesterase regA [Naegleria gruberi]
gi|284082791|gb|EFC36502.1| 3',5'-cyclic-nucleotide phosphodiesterase regA [Naegleria gruberi]
Length = 842
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
Query: 6 SSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
+S+ V D+ +VLVVDDD + ++L K+L + ++V + AL++LR N Y
Sbjct: 80 NSITVEDE--GAKKVLVVDDDRVARQVLTKLLEQLGFQVKAVEGGKQALEVLREEGNNYH 137
Query: 66 IVISDVHMPDMDGFKLHE--QVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+++ DV MPDMDG +L + + D+P+IM+S + + GA ++L KP+++
Sbjct: 138 LLLVDVLMPDMDGLQLLKIFRQAYSEDMPIIMVSSSEDPDTINQCFQSGAEDFLQKPVQL 197
Query: 124 KELR 127
+ L+
Sbjct: 198 EILK 201
>gi|418461796|ref|ZP_13032858.1| two-component system response regulator [Saccharomonospora azurea
SZMC 14600]
gi|359738096|gb|EHK87002.1| two-component system response regulator [Saccharomonospora azurea
SZMC 14600]
Length = 224
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 70/127 (55%), Gaps = 6/127 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+++DDP LE L + + V E LD LR D+V+ D+ +P MDG
Sbjct: 3 RILLIEDDPAVREGLELALSRQGHTVDAVESGEQGLDRLRTDPP--DVVVLDLMLPGMDG 60
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI--RIKE--LRNIWQHVA 134
F++ + G D+P+IM++ G DV+ G+ GA +Y++KP+ R+ E +R + + +
Sbjct: 61 FEVCRRAGATTDVPIIMLTARGDDMDVVAGLEAGADDYVVKPVQPRVLEARIRAVLRRIG 120
Query: 135 QQPKPFE 141
++ E
Sbjct: 121 REQSDLE 127
>gi|329927731|ref|ZP_08281843.1| heme response regulator HssR [Paenibacillus sp. HGF5]
gi|328938309|gb|EGG34702.1| heme response regulator HssR [Paenibacillus sp. HGF5]
Length = 223
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+++LVVDDD L+++ L + YEV + + AL +L ++ ++ I DV MP MD
Sbjct: 1 MKILVVDDDYDILQLVTIHLTREGYEVLQAQNGQYALKLLEETE--VNLAIVDVMMPGMD 58
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
GF L + + E+++PVI+++ G D +G G+ +YL+KP KEL
Sbjct: 59 GFSLTKILTKELEIPVILLTAKGQLSDKEQGFRSGSEDYLVKPFEPKEL 107
>gi|406982260|gb|EKE03600.1| hypothetical protein ACD_20C00177G0003 [uncultured bacterium]
Length = 236
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 15/139 (10%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L++DDDP + L LR + + N L + +N YD++I DV MP M+G
Sbjct: 4 RILIIDDDPEIMDWLSFDLRLSGFYIDSANDGLNGLQ--KAQQNNYDLIILDVMMPKMNG 61
Query: 79 FKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR-------- 127
F++ + + D+P+I+++ G +D G + GA +YL+KP I+EL
Sbjct: 62 FEVCKNLRTSARTKDIPIILLTAKGTIEDKAIGFSSGADDYLVKPFDIQELLMRMRALLR 121
Query: 128 --NIWQHVAQQPKPFEESD 144
N+ +H Q P+ E D
Sbjct: 122 RINVPEHQIQSPEILEAGD 140
>gi|334136361|ref|ZP_08509829.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF7]
gi|333606089|gb|EGL17435.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF7]
Length = 1054
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 12/127 (9%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDDDPI L++LE +L YEVT + AL +L + +D+VISD+ MP M G+
Sbjct: 719 LLIVDDDPINLQVLETILPPEEYEVTLVTSGKEALAVLDTKE--WDLVISDIMMPQMSGY 776
Query: 80 KLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI-------RIKELRNI 129
+L + +LP+++++ +D+ G GA +Y+ KP+ RI+ L I
Sbjct: 777 ELTRIIRKRFTLTELPILLLTARSQPKDIQSGFLAGANDYVTKPVEAIEIKSRIEALTTI 836
Query: 130 WQHVAQQ 136
Q V +Q
Sbjct: 837 KQVVREQ 843
>gi|389576494|ref|ZP_10166522.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Eubacterium cellulosolvens 6]
gi|389311979|gb|EIM56912.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Eubacterium cellulosolvens 6]
Length = 229
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVLVVDD+ + ++ + L + YEV+ E AL+M + +N YDI++ D+ +P M+G
Sbjct: 4 RVLVVDDEKLIVKGIRFSLEQDGYEVSCAYDGEEALNMAK--ENTYDIILLDLMLPKMNG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
+ +Q+ +P+IM++ G D + G+ +GA +Y+ KP I E++ + + ++ +
Sbjct: 62 LDVCQQIREFSSVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRAR 121
Query: 139 PFEESDDSYSVNQGN 153
E++++ V Q
Sbjct: 122 KPEKAEEKTKVVQAG 136
>gi|302343346|ref|YP_003807875.1| Fis family transcriptional regulator [Desulfarculus baarsii DSM
2075]
gi|301639959|gb|ADK85281.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfarculus baarsii DSM 2075]
Length = 449
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD+ +L +LE +LR Y+V + + AL + ++ D+VI+D+ MP M G
Sbjct: 3 RILVVDDEKNYLVVLEALLRGEGYDVRTADNGQAALRL--ADEDEPDLVITDMKMPRMSG 60
Query: 79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+L + + ++ DLPVI+M+ G ++ ++ + GA +Y++KP +EL
Sbjct: 61 IELIQALRVDHPDLPVIVMTAYGTVENAVEAMKLGATDYIIKPFENREL 109
>gi|113476924|ref|YP_722985.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
gi|110167972|gb|ABG52512.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
Length = 1207
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 5 SSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY 64
+SS+ S + + ++L+VDD+P+ L +L L Y+V + N + ALD+L
Sbjct: 726 TSSLPSSSKKESEFQILIVDDEPVNLTLLSNQLSLHNYQVIQANNGQKALDILAQDFLP- 784
Query: 65 DIVISDVHMPDMDGFKLHEQVG---LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
D+++ DV MP M G+++ ++V L LP+IM++ D++ G+ GA +YL KP
Sbjct: 785 DLILLDVMMPGMTGYEVTQKVRETWLLHQLPIIMLTAKNRVSDLVMGLEVGANDYLSKPF 844
Query: 122 RIKEL 126
KEL
Sbjct: 845 HKKEL 849
>gi|456359112|dbj|BAM93385.1| pseudo-response regulator [Triticum monococcum subsp. aegilopoides]
gi|456359118|dbj|BAM93388.1| pseudo-response regulator [Triticum monococcum subsp. monococcum]
Length = 662
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M +
Sbjct: 31 IRVLLVETDDSTRQVVIALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 90
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 91 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 147
Query: 131 QHV 133
HV
Sbjct: 148 AHV 150
>gi|456359092|dbj|BAM93375.1| pseudo-response regulator [Triticum timopheevii subsp. timopheevii]
gi|456359094|dbj|BAM93376.1| pseudo-response regulator [Triticum timopheevii subsp. timopheevii]
gi|456359096|dbj|BAM93377.1| pseudo-response regulator [Triticum timopheevii subsp. timopheevii]
gi|456359098|dbj|BAM93378.1| pseudo-response regulator [Triticum timopheevii subsp. timopheevii]
gi|456359100|dbj|BAM93379.1| pseudo-response regulator [Triticum timopheevii subsp. timopheevii]
gi|456359224|dbj|BAM93441.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
Length = 668
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V++++ M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEMFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|456359072|dbj|BAM93365.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359074|dbj|BAM93366.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359076|dbj|BAM93367.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359078|dbj|BAM93368.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359080|dbj|BAM93369.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359082|dbj|BAM93370.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359084|dbj|BAM93371.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359086|dbj|BAM93372.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
gi|456359088|dbj|BAM93373.1| pseudo-response regulator [Triticum timopheevii subsp. armeniacum]
Length = 668
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V++++ M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEMFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|428309726|ref|YP_007120703.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Microcoleus sp. PCC 7113]
gi|428251338|gb|AFZ17297.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Microcoleus sp. PCC 7113]
Length = 248
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL+ R + D+V+ DV MP +DG
Sbjct: 13 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRNADP--DLVVLDVMMPKLDG 70
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 71 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 118
>gi|153004813|ref|YP_001379138.1| two component sigma54 specific Fis family transcriptional regulator
[Anaeromyxobacter sp. Fw109-5]
gi|152028386|gb|ABS26154.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter sp. Fw109-5]
Length = 470
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
VL+VDD+ R+L ML++ YEVT E AL +L K +V++D+ MP + G
Sbjct: 4 VLIVDDEVNIRRVLAAMLKREGYEVTTAADGEQALGVLH--KTPVHVVVTDLVMPKVGGM 61
Query: 80 KLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135
+L +VG + D+PVIM++ G + + GA +Y+ KP EL+ + A+
Sbjct: 62 ELLRRVGADFPDVPVIMITAHGSVDSAVGALKAGAFDYITKPFEQDELKKVIAKAAR 118
>gi|296537068|ref|ZP_06899045.1| conserved hypothetical protein, partial [Roseomonas cervicalis ATCC
49957]
gi|296262605|gb|EFH09253.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
Length = 278
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVLV DD + R+ ++L + +EV + +IALD+L D+V+ D++MP++D
Sbjct: 15 LRVLVADDSRVNQRVFARILERAGHEVLLADNGDIALDLLEREAERLDLVLMDLNMPEVD 74
Query: 78 GF---KLHEQVGL-EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G KL + L + LP++ ++ D + + G YL+KPI + L + +
Sbjct: 75 GLEATKLFRVMALGQPHLPILALTADATEAAERRCLEAGMDGYLVKPIEAEALLRVVEEK 134
Query: 134 AQQPKP 139
A+ P+P
Sbjct: 135 ARPPRP 140
>gi|284929471|ref|YP_003421993.1| winged helix family two component transcriptional regulator
[cyanobacterium UCYN-A]
gi|284809915|gb|ADB95612.1| two component transcriptional regulator, winged helix family
[cyanobacterium UCYN-A]
Length = 243
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 6/125 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL++ S D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFYDSVP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVE 124
Query: 135 QQPKP 139
+ P
Sbjct: 125 KGSNP 129
>gi|379025576|dbj|BAL63565.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025578|dbj|BAL63566.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025580|dbj|BAL63567.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025582|dbj|BAL63568.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|456359194|dbj|BAM93426.1| pseudo-response regulator [Triticum ispahanicum]
gi|456359196|dbj|BAM93427.1| pseudo-response regulator [Triticum ispahanicum]
gi|456359220|dbj|BAM93439.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|456359222|dbj|BAM93440.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
Length = 668
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V++++ M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEMFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|227535934|ref|ZP_03965983.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
33300]
gi|227244177|gb|EEI94192.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
33300]
Length = 225
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 3/110 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ +L V+D+ IL L + VT C+ A + K YD+++ DV MP MD
Sbjct: 2 ISILYVEDEAGLAMILSDTLASHGFAVTHCDNGGEAFSTFQEQK--YDLLLIDVMMPVMD 59
Query: 78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
GF+L ++V G++ D+P+I ++ T+DV+ G GA +Y+ KP +I+EL
Sbjct: 60 GFELAKKVRGMDTDVPIIFLTARTQTEDVVAGFHLGANDYIKKPFKIEEL 109
>gi|414070767|ref|ZP_11406747.1| two-component system, NtrC family, response regulator YfhA
[Pseudoalteromonas sp. Bsw20308]
gi|410806784|gb|EKS12770.1| two-component system, NtrC family, response regulator YfhA
[Pseudoalteromonas sp. Bsw20308]
Length = 448
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+VL+VDDD L++L + YEVT C AL +L+ +D VI+D+ M +MDG
Sbjct: 10 KVLLVDDDASLLKLLAIRIESKGYEVTTCESGLTALQILK--SQVFDAVITDLRMDEMDG 67
Query: 79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
LH Q+ LPVIMM+ G D ++ G ++ KP+ EL
Sbjct: 68 MALHRQLQSRYPALPVIMMTAHGSIPDAVEATKQGIFAFITKPVDKDEL 116
>gi|407940649|ref|YP_006856290.1| two component sigma-54 specific transcriptional regulator
[Acidovorax sp. KKS102]
gi|407898443|gb|AFU47652.1| putative two component sigma-54 specific transcriptional regulator
[Acidovorax sp. KKS102]
Length = 470
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDDD LR+L L+ ++V AE AL L +++ +V+SDV +P DG
Sbjct: 14 RILVVDDDADMLRLLSLRLKAAGHDVVAVGSAEAALAQLDIARP--QLVLSDVRLPGRDG 71
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L ++V LPVI+++ G D ++ + G YL KP KEL
Sbjct: 72 LALFDEVRARHPSLPVILLTAHGTIPDAVEATSRGVFTYLTKPYDGKEL 120
>gi|302873857|ref|YP_003842490.1| response regulator receiver sensor signal transduction histidine
kinase [Clostridium cellulovorans 743B]
gi|307689897|ref|ZP_07632343.1| response regulator receiver sensor signal transduction histidine
kinase [Clostridium cellulovorans 743B]
gi|302576714|gb|ADL50726.1| response regulator receiver sensor signal transduction histidine
kinase [Clostridium cellulovorans 743B]
Length = 366
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 69/112 (61%), Gaps = 5/112 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+++LVVDD P ++I+ +L++ Y + AL+M++ + +++++ DV MP+MD
Sbjct: 7 IKILVVDDTPFNIKIVSTILQEVGYNIYSTTSGREALEMVKNIR--FNLILLDVMMPEMD 64
Query: 78 GFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
G+++ ++ + D+P+I ++ G ++ V++ GA +YL+KP KEL
Sbjct: 65 GYEVIRKLKNDEDTRDIPIIFLTARGDSESVVRAFDEGAYDYLIKPFNPKEL 116
>gi|258514654|ref|YP_003190876.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
gi|257778359|gb|ACV62253.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
Length = 225
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LV+DDDP +L++ L Y V N + + +L N +D+VI DV MP +DG+
Sbjct: 5 ILVIDDDPRITALLKRTLLFNGYTVEAANDGKAGITLL--ENNHFDLVILDVMMPGLDGW 62
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ Q+ DLPV+M++ +D +KG+ GA +YL+KP + EL
Sbjct: 63 QVCGQIREYYDLPVLMLTARDEVEDRVKGLDLGADDYLVKPFAMTEL 109
>gi|309790146|ref|ZP_07684718.1| two component transcriptional regulator [Oscillochloris trichoides
DG-6]
gi|308227731|gb|EFO81387.1| two component transcriptional regulator [Oscillochloris trichoides
DG6]
Length = 245
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+ DDDP +++ L+ YE+ AL K +D+VI DV MP +DG
Sbjct: 20 RILIADDDPSIAALIQVTLKDPRYEIIAVANGLEALKAF--EKQPFDVVILDVMMPYVDG 77
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
F+ E++ + D+P+++++ T+DV+ G GA +Y+ KP + EL
Sbjct: 78 FEACERIRAQSDVPIVILTSRDGTEDVVHGFELGADDYITKPFKTVEL 125
>gi|90413136|ref|ZP_01221132.1| hypothetical sensory box sensor histidine kinase/response regulator
[Photobacterium profundum 3TCK]
gi|90325827|gb|EAS42279.1| hypothetical sensory box sensor histidine kinase/response regulator
[Photobacterium profundum 3TCK]
Length = 1117
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P G +LVVDD+P+ L++L LR Y V + AL ++ + +++ D+ MP
Sbjct: 706 PDGELLLVVDDEPVNLQVLNNFLRLEGYRVLTADSGPQALKIIEQQQPA--LILLDIMMP 763
Query: 75 DMDGFK----LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+M G++ L E+ L ++LP+IM+S G QD +KG GA +YL KP +EL
Sbjct: 764 EMSGYEVCHILREEHSL-IELPIIMLSALGQVQDRIKGFESGANDYLTKPFNKEEL 818
>gi|451817230|ref|YP_007453431.1| signal-transduction histidine kinase SenX3 [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451783209|gb|AGF54177.1| signal-transduction histidine kinase SenX3 [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 368
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 5/111 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDD +RI+ +L YE+ N A+ LR N YD+++ DV MP+MDG
Sbjct: 7 KILIVDDALFNIRIVTNILEHAGYEIHSVNSGIRAIIELR--NNKYDLILLDVVMPEMDG 64
Query: 79 FKLH---EQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+K++ +Q D+P+I ++ G + V+K + GA +++ KP KEL
Sbjct: 65 YKVNKVLKQNKNTKDIPIIFLTARGDSNSVVKALDDGAVDFITKPFNEKEL 115
>gi|254486252|ref|ZP_05099457.1| response regulator receiver domain protein [Roseobacter sp. GAI101]
gi|214043121|gb|EEB83759.1| response regulator receiver domain protein [Roseobacter sp. GAI101]
Length = 314
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKC-LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
+R+L VDDD + L +LE + ++ EV +AL+ + SK+G+D + D+ MP+M
Sbjct: 1 MRILAVDDDSVVLDLLEVIFKQSDGIEVVVAASGALALEAIATSKDGFDCFLLDISMPEM 60
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G +L E++ G D P+IM++ + + + GA +Y+ KP + ++ Q
Sbjct: 61 TGIELCERIRVHGAHRDTPIIMLTANTDKTSIEQAFAAGASDYITKPFDVADISTRVQIA 120
Query: 134 AQ 135
A+
Sbjct: 121 AR 122
>gi|379025574|dbj|BAL63564.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
Length = 668
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V++++ M +
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEMFMHGGL 97
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 154
Query: 131 QHV 133
HV
Sbjct: 155 AHV 157
>gi|386307708|ref|YP_006003764.1| two-component sensor protein RcsC [Yersinia enterocolitica subsp.
palearctica Y11]
gi|318606418|emb|CBY27916.1| two-component sensor protein RcsC [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 955
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
A L +LVVDD PI R+L L Y V N AL +L + N DIV++DV+MP+
Sbjct: 831 ADLHILVVDDHPINRRLLADQLTALGYRVITANDGLDALAVL--NTNSVDIVLTDVNMPN 888
Query: 76 MDGFKL-HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
MDG++L H L + PVI ++ + + ++ + G N L KP+ + LR + ++
Sbjct: 889 MDGYRLTHRLRELNHNFPVIGVTANALAESKLRCIEAGMDNCLSKPVTLDTLRQMLRY 946
>gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii RHA1]
gi|397734862|ref|ZP_10501565.1| response regulator [Rhodococcus sp. JVH1]
gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii RHA1]
gi|396929087|gb|EJI96293.1| response regulator [Rhodococcus sp. JVH1]
Length = 235
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P RVLVVDD+P L +L LR +EV + LD R + D VI DV MP
Sbjct: 5 PVEARVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRP--DAVILDVMMP 62
Query: 75 DMDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
MDGF L +++ + +D PV+ ++ +D + G+T GA +Y+ KP ++E+
Sbjct: 63 GMDGFGLLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEV 115
>gi|384165999|ref|YP_005547378.1| transcriptional regulatory protein [Bacillus amyloliquefaciens LL3]
gi|384170194|ref|YP_005551572.1| two-component response regulator [Bacillus amyloliquefaciens XH7]
gi|328913554|gb|AEB65150.1| Uncharacterized transcriptional regulatory protein [Bacillus
amyloliquefaciens LL3]
gi|341829473|gb|AEK90724.1| putative two-component response regulator [Bacillus
amyloliquefaciens XH7]
Length = 250
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 69/124 (55%), Gaps = 9/124 (7%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LV DDD ++ M+ + ++V + E A+ ++ + D++I DV MP MDGF
Sbjct: 29 ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTH--IDLIILDVMMPKMDGF 86
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI-------RIKELRNIWQH 132
++ E V D+P++M++ G T D ++G T GA +YL+KP R+K L ++
Sbjct: 87 EVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYRI 146
Query: 133 VAQQ 136
A++
Sbjct: 147 TAEK 150
>gi|90425982|ref|YP_534352.1| response regulator receiver domain-containing protein
[Rhodopseudomonas palustris BisB18]
gi|90107996|gb|ABD90033.1| response regulator receiver domain protein (CheY-like)
[Rhodopseudomonas palustris BisB18]
Length = 310
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD L I EKM + + A MLR + D+VI+D MP MDG
Sbjct: 14 RLLIVDDDRFSLAIFEKMASSLGFITETSSDGAEAFAMLRENPGRADVVITDRMMPVMDG 73
Query: 79 FKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135
F L ++ E +PVI+++ +D+ G+ GA YL KP + +R++ +
Sbjct: 74 FALTRRLKREPSTRGIPVILLTGSNVAEDIAAGLDAGAFYYLTKPPSVDLVRSVVDSARK 133
Query: 136 QPKPFEESDDSYSVNQGNW------RTSNRRKDEEE 165
+ SV+Q + RT +R DE E
Sbjct: 134 EVDRQRNVASKLSVHQSAFVNVTVLRTLLKRPDEVE 169
>gi|443312755|ref|ZP_21042370.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Synechocystis sp. PCC 7509]
gi|442777211|gb|ELR87489.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Synechocystis sp. PCC 7509]
Length = 256
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E AL++ R ++ ++V+ DV MP +DG
Sbjct: 21 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFRKAEP--NLVVLDVMMPKLDG 78
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 79 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 126
>gi|363897769|ref|ZP_09324307.1| hypothetical protein HMPREF9624_00869 [Oribacterium sp. ACB7]
gi|361958234|gb|EHL11536.1| hypothetical protein HMPREF9624_00869 [Oribacterium sp. ACB7]
Length = 244
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 2/134 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD ++ L K + E AL + K G D++I D+ +P +DG
Sbjct: 6 RILIVDDDSSIAELISLYLEKECFSTKIAEDGEAALSL--YEKEGADLLILDLMLPGIDG 63
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
+++ ++ D+P+IM+S G T D + G+ GA +Y+LKP KEL + V ++ +
Sbjct: 64 YEVCRRIRASSDVPIIMLSAKGETFDKVLGLELGADDYILKPFDTKELVARVKAVLRRFQ 123
Query: 139 PFEESDDSYSVNQG 152
P +S + + G
Sbjct: 124 PGRKSASRETTDNG 137
>gi|15614576|ref|NP_242879.1| hypothetical protein BH2013 [Bacillus halodurans C-125]
gi|10174632|dbj|BAB05732.1| BH2013 [Bacillus halodurans C-125]
Length = 914
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDDD + L +L+ ++ Y + E LD L G+D++++DV MP M G
Sbjct: 587 KILIVDDDAVNLHVLKNIICSEAYTIEAVTSGEEVLDRL---DQGWDLILADVMMPSMSG 643
Query: 79 FKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++L ++ + +LPV++++ G ++V G GA +YL+KPI EL+
Sbjct: 644 YELTREIRNQFSISELPVLLLTARGQPEEVYTGFMSGANDYLVKPIDALELK 695
>gi|23014475|ref|ZP_00054289.1| COG3706: Response regulator containing a CheY-like receiver domain
and a GGDEF domain [Magnetospirillum magnetotacticum
MS-1]
Length = 617
Score = 68.9 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
G +LVVDD P+ ++L+ ML+ Y + + +AL+ L+ +D ++ D MP M
Sbjct: 322 GASLLVVDDMPMNRKLLDTMLKAEGYAIAEAEDGLVALERLQAEPERFDAILLDRQMPRM 381
Query: 77 DGFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
DG L + ++ L PVIM + G ++D+ +G+ G YL+KP++++ L ++
Sbjct: 382 DGMTLLRHLKSDIRLAQIPVIMQTAFGSSEDIAEGIQAGVFYYLVKPLQLQILSSV 437
>gi|323495909|ref|ZP_08100977.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
sinaloensis DSM 21326]
gi|323319125|gb|EGA72068.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
sinaloensis DSM 21326]
Length = 1128
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
G +LVVDD+P+ LR+L+ LR Y V+ AL+ + + + ++V+ D+ MP M
Sbjct: 721 GPLLLVVDDEPVNLRVLDSFLRLEGYRVSTAKDGHEALEKVAIERP--ELVLLDIMMPGM 778
Query: 77 DGFKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
G+++ E + LE D LPVIM++ D ++G GA +YL KP +EL
Sbjct: 779 SGYQVCETLRLEYDHSQLPVIMLTALNQADDRVRGFNAGANDYLSKPFNKQEL 831
>gi|291007101|ref|ZP_06565074.1| two-component system, response regulator [Saccharopolyspora
erythraea NRRL 2338]
Length = 241
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRM-SKNGYDIVI 68
++D + RVLVVDD+P L +L LR +EV A D LR S+ G DIV+
Sbjct: 1 MADSDTSAARVLVVDDEPNILELLTAALRLSGFEVRG---AATGADALRAASEFGPDIVV 57
Query: 69 SDVHMPDMDGFKLHEQVGLEMDL-PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE-- 125
DV +PD DGF + ++ DL PV+ ++ +D + G+T G +Y+ KP + E
Sbjct: 58 LDVMLPDQDGFSVARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVV 117
Query: 126 --LRNIWQHVAQQPKPFEESD 144
LR I + V +P +E D
Sbjct: 118 LRLRAILRRV--RPAHLDEPD 136
>gi|218246417|ref|YP_002371788.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8801]
gi|257059460|ref|YP_003137348.1| two component LuxR family transcriptional regulator [Cyanothece sp.
PCC 8802]
gi|218166895|gb|ACK65632.1| two component transcriptional regulator, LuxR family [Cyanothece
sp. PCC 8801]
gi|256589626|gb|ACV00513.1| two component transcriptional regulator, LuxR family [Cyanothece
sp. PCC 8802]
Length = 216
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L++DDDP + +++ L YEVT AL++L + D++I DV MP+MDG
Sbjct: 11 RLLLIDDDPNLILLVKDYLEFQGYEVTTAENGREALEIL--ANQVPDMIICDVMMPEMDG 68
Query: 79 FKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ E+V + L PV+ +S G +QD +KG+ GA Y++KP +EL
Sbjct: 69 YAFVEKVRQDRRLSWIPVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEEL 119
>gi|444350370|ref|YP_007386514.1| Two-component sensor protein RcsC (EC 2.7.3.-) [Enterobacter
aerogenes EA1509E]
gi|443901200|emb|CCG28974.1| Two-component sensor protein RcsC (EC 2.7.3.-) [Enterobacter
aerogenes EA1509E]
Length = 950
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDD PI R+L L Y+ N AL++L SK DIV+SDV+MP+MDG+
Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCMTANDGVDALNVL--SKQHIDIVLSDVNMPNMDGY 884
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
+L +++ LEM LPVI ++ + ++ + + G + L KP+ + L++ A Q +
Sbjct: 885 RLTQRIRQLEMTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDILKHTLATYAAQVR 944
>gi|359450427|ref|ZP_09239868.1| two-component system, NtrC family, response regulator YfhA
[Pseudoalteromonas sp. BSi20480]
gi|392536793|ref|ZP_10283930.1| response regulator in two-component regulatory system
[Pseudoalteromonas marina mano4]
gi|358043780|dbj|GAA76117.1| two-component system, NtrC family, response regulator YfhA
[Pseudoalteromonas sp. BSi20480]
Length = 449
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P +VL+VDDD L++L + Y+VT C AL +L+ + +D VI+D+ M
Sbjct: 6 PHKAKVLLVDDDASLLKLLAIRIESKGYQVTTCESGLAALQILK--SHVFDAVITDLRMD 63
Query: 75 DMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+MDG LH Q+ LPVIMM+ G D ++ G ++ KP+ EL
Sbjct: 64 EMDGMALHRQLQSRYPALPVIMMTAHGSIPDAVEATKQGIFAFITKPVDKDEL 116
>gi|418241003|ref|ZP_12867537.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|433548337|ref|ZP_20504387.1| Two-component sensor protein RcsC [Yersinia enterocolitica IP
10393]
gi|351779648|gb|EHB21751.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|431790897|emb|CCO67427.1| Two-component sensor protein RcsC [Yersinia enterocolitica IP
10393]
Length = 932
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
A L +LVVDD PI R+L L Y V N AL +L + N DIV++DV+MP+
Sbjct: 808 ADLHILVVDDHPINRRLLADQLTALGYRVITANDGLDALAVL--NTNSVDIVLTDVNMPN 865
Query: 76 MDGFKL-HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
MDG++L H L + PVI ++ + + ++ + G N L KP+ + LR + ++
Sbjct: 866 MDGYRLTHRLRELNHNFPVIGVTANALAESKLRCIEAGMDNCLSKPVTLDTLRQMLRY 923
>gi|332162345|ref|YP_004298922.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325666575|gb|ADZ43219.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|330860455|emb|CBX70762.1| sensor kinase protein rcsC [Yersinia enterocolitica W22703]
Length = 932
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
A L +LVVDD PI R+L L Y V N AL +L + N DIV++DV+MP+
Sbjct: 808 ADLHILVVDDHPINRRLLADQLTALGYRVITANDGLDALAVL--NTNSVDIVLTDVNMPN 865
Query: 76 MDGFKL-HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
MDG++L H L + PVI ++ + + ++ + G N L KP+ + LR + ++
Sbjct: 866 MDGYRLTHRLRELNHNFPVIGVTANALAESKLRCIEAGMDNCLSKPVTLDTLRQMLRY 923
>gi|242238486|ref|YP_002986667.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Dickeya dadantii Ech703]
gi|242130543|gb|ACS84845.1| histidine kinase [Dickeya dadantii Ech703]
Length = 934
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+LVVDD PI R+L L Y+V N ALD+L SKN DIV++DV+MP+MD
Sbjct: 806 IRILVVDDHPINRRLLADQLGSLGYQVITANDGLDALDVL--SKNPVDIVLTDVNMPNMD 863
Query: 78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
G++ +++ + PVI ++ + ++ + + G N L KP+ ++ L+
Sbjct: 864 GYRFTQRLRDMAQTFPVIGVTANALAEERQRCLQAGMDNCLSKPVTLETLQ 914
>gi|359491315|ref|XP_002281757.2| PREDICTED: two-component response regulator-like APRR1-like [Vitis
vinifera]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
+ +R+L+ D+D + +L C Y+VT A +D L + DI++++V +P
Sbjct: 25 SNVRILLCDNDTKSSDEIFTLLCGCSYQVTSVRSARQVIDALNAEGHDIDIILAEVDLPM 84
Query: 76 MDGFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
G K+ + + + +L P+IMMS V+K + GA +YL+KP+R EL N+W H
Sbjct: 85 TKGMKMLKYIMRDKELRRIPIIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 144
Query: 133 V 133
+
Sbjct: 145 M 145
>gi|359454999|ref|ZP_09244252.1| two-component system, NtrC family, response regulator YfhA
[Pseudoalteromonas sp. BSi20495]
gi|358047965|dbj|GAA80501.1| two-component system, NtrC family, response regulator YfhA
[Pseudoalteromonas sp. BSi20495]
Length = 448
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+VL+VDDD L++L + YEVT C AL +L+ +D VI+D+ M +MDG
Sbjct: 10 KVLLVDDDASLLKLLAIRIESKGYEVTTCESGLTALQILK--SQVFDAVITDLRMDEMDG 67
Query: 79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
LH Q+ LPVIMM+ G D ++ G ++ KP+ EL
Sbjct: 68 MALHRQLQSRYPALPVIMMTAHGSIPDAVEATKQGIFAFITKPVDKDEL 116
>gi|429116300|ref|ZP_19177218.1| Two-component sensor protein RcsC [Cronobacter sakazakii 701]
gi|449307510|ref|YP_007439866.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Cronobacter sakazakii SP291]
gi|426319429|emb|CCK03331.1| Two-component sensor protein RcsC [Cronobacter sakazakii 701]
gi|449097543|gb|AGE85577.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Cronobacter sakazakii SP291]
Length = 949
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 6/126 (4%)
Query: 3 PASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN 62
PASS+ A ++ + +LVVDD PI R+L L Y+ N AL++L SKN
Sbjct: 814 PASSTSAEQNE---DMMILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVL--SKN 868
Query: 63 GYDIVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DIV+SDV+MP+MDG++L +++ L M LPV+ ++ + ++ + + G + L KP+
Sbjct: 869 HIDIVLSDVNMPNMDGYRLTQRIRELGMTLPVVGVTANALAEEKQRCLESGMDSCLSKPV 928
Query: 122 RIKELR 127
+ L+
Sbjct: 929 TLDVLK 934
>gi|118638618|gb|ABL09465.1| pseudo-response regulator [Triticum aestivum]
gi|379025584|dbj|BAL63569.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025586|dbj|BAL63570.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025588|dbj|BAL63571.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025590|dbj|BAL63572.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025592|dbj|BAL63573.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025594|dbj|BAL63574.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025596|dbj|BAL63575.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025598|dbj|BAL63576.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025600|dbj|BAL63577.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025602|dbj|BAL63578.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025604|dbj|BAL63579.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025606|dbj|BAL63580.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025608|dbj|BAL63581.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025610|dbj|BAL63582.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025612|dbj|BAL63583.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025614|dbj|BAL63584.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025616|dbj|BAL63585.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025618|dbj|BAL63586.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025620|dbj|BAL63587.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025632|dbj|BAL63593.1| pseudo-response regulator [Triticum durum]
gi|379025634|dbj|BAL63594.1| pseudo-response regulator [Triticum durum]
gi|379025636|dbj|BAL63595.1| pseudo-response regulator [Triticum durum]
gi|379025640|dbj|BAL63597.1| pseudo-response regulator [Triticum durum]
gi|456359214|dbj|BAM93436.1| pseudo-response regulator [Triticum turgidum subsp. paleocolchicum]
gi|456359216|dbj|BAM93437.1| pseudo-response regulator [Triticum turgidum subsp. paleocolchicum]
Length = 266
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP--- 74
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 75 ---DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
D+ G ++ +V D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHEVC--KDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLWA 155
Query: 132 HV 133
HV
Sbjct: 156 HV 157
>gi|312883993|ref|ZP_07743710.1| sensory box sensor histidine kinase/response regulator [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309368451|gb|EFP95986.1| sensory box sensor histidine kinase/response regulator [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 1127
Score = 68.9 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 27/186 (14%)
Query: 1 MSPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS 60
+ P S+ +V D A L +LVVDD+PI LRIL L+ Y V N AL+ +R
Sbjct: 706 LKPCESTHSV-DNLEAPL-ILVVDDEPINLRILNSYLKTEGYRVLTVNDGLSALEAVR-- 761
Query: 61 KNGYDIVISDVHMPDMDGFKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYL 117
+++ D+ +PDM G+ + ++ D LP+IM++ T+D +KG GA ++L
Sbjct: 762 NETPQLILLDIMIPDMSGYDVCVKLRKTYDHATLPIIMLTALNQTEDRLKGFASGANDFL 821
Query: 118 LKPIRIKE-LRNIWQHVAQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTSTL 176
KP KE L I H+A + +RK E ++ EK L
Sbjct: 822 SKPFNQKELLARITAHLAAS-------------------QAEQRKMENQKLEKEIKQRVL 862
Query: 177 KKPRFL 182
+ RFL
Sbjct: 863 IEARFL 868
>gi|441506366|ref|ZP_20988339.1| Chitin catabolic cascade sensor histidine kinase ChiS
[Photobacterium sp. AK15]
gi|441425984|gb|ELR63473.1| Chitin catabolic cascade sensor histidine kinase ChiS
[Photobacterium sp. AK15]
Length = 1127
Score = 68.9 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 5/110 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDD+P+ L++L LR Y V AL++L + +++ D+ MP M+G+
Sbjct: 722 LLIVDDEPVNLQVLTNYLRLEGYRVITAENGPQALELLESEQPA--LLLLDIMMPGMNGY 779
Query: 80 KLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ +Q+ E + LP+IM+S G QD +KG +GA +YL KP +EL
Sbjct: 780 EVCQQLRKEHTPLSLPIIMLSALGQVQDRVKGFEYGANDYLTKPFNKEEL 829
>gi|424800371|ref|ZP_18225913.1| Two-component sensor protein RcsC [Cronobacter sakazakii 696]
gi|423236092|emb|CCK07783.1| Two-component sensor protein RcsC [Cronobacter sakazakii 696]
Length = 949
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 6/126 (4%)
Query: 3 PASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN 62
PASS+ A ++ + +LVVDD PI R+L L Y+ N AL++L SKN
Sbjct: 814 PASSTSAEQNE---DMMILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVL--SKN 868
Query: 63 GYDIVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DIV+SDV+MP+MDG++L +++ L M LPV+ ++ + ++ + + G + L KP+
Sbjct: 869 HIDIVLSDVNMPNMDGYRLTQRIRELGMTLPVVGVTANALAEEKQRCLESGMDSCLSKPV 928
Query: 122 RIKELR 127
+ L+
Sbjct: 929 TLDVLK 934
>gi|403381196|ref|ZP_10923253.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. JC66]
Length = 230
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDDD ++E L YEVTK + AL+ + K+ Y +VI DV MP +DG
Sbjct: 4 QILIVDDDKEIANLIEIYLANDGYEVTKAHNGLEALE--ELGKSEYHLVILDVMMPKLDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ Q+ + ++P++M+S G D + G+T GA +Y++KP EL
Sbjct: 62 LEVCRQIRSKQNIPILMLSAKGEDMDKILGLTTGADDYMVKPFNPLEL 109
>gi|225872621|ref|YP_002754078.1| chemotaxis protein CheY [Acidobacterium capsulatum ATCC 51196]
gi|225791309|gb|ACO31399.1| chemotaxis protein CheY [Acidobacterium capsulatum ATCC 51196]
Length = 129
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 71/117 (60%), Gaps = 8/117 (6%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKC---LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
++VL+VDD + +I+E+ LR L +V + + AL++L+ + D++ SD++MP
Sbjct: 4 IKVLIVDDSAVMRKIVERSLRSAGLALAQVWEAGSGKEALEVLQAQQ--VDLIFSDINMP 61
Query: 75 DMDGFKLHEQVG---LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
+M+G + QV L +P++M++ +G + V++ V GA Y+LKP +++++
Sbjct: 62 EMNGLEFLAQVSAKQLAPGVPIVMITTEGSEEHVVQAVQAGARGYILKPFTAEQIKD 118
>gi|428772622|ref|YP_007164410.1| winged helix family two component transcriptional regulator
[Cyanobacterium stanieri PCC 7202]
gi|428686901|gb|AFZ46761.1| two component transcriptional regulator, winged helix family
[Cyanobacterium stanieri PCC 7202]
Length = 248
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 6/146 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD+ RILE L Y+V E A+ ++ D+V+ DV MP +DG
Sbjct: 7 RILVVDDEASIRRILETRLSMIGYDVVTAADGEDAIATFHETQP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVD 124
Query: 135 QQPKPFEESDDSYSVNQGNWRTSNRR 160
+ S SVN T+ R+
Sbjct: 125 KDGVAGIPSSGVISVNAIRIDTNKRQ 150
>gi|389840222|ref|YP_006342306.1| sensor protein RcsC [Cronobacter sakazakii ES15]
gi|429121182|ref|ZP_19181825.1| Two-component sensor protein RcsC [Cronobacter sakazakii 680]
gi|387850698|gb|AFJ98795.1| sensor protein RcsC [Cronobacter sakazakii ES15]
gi|426324338|emb|CCK12562.1| Two-component sensor protein RcsC [Cronobacter sakazakii 680]
Length = 949
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 6/126 (4%)
Query: 3 PASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN 62
PASS+ A ++ + +LVVDD PI R+L L Y+ N AL++L SKN
Sbjct: 814 PASSTSAEQNE---DMMILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVL--SKN 868
Query: 63 GYDIVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DIV+SDV+MP+MDG++L +++ L M LPV+ ++ + ++ + + G + L KP+
Sbjct: 869 HIDIVLSDVNMPNMDGYRLTQRIRELGMTLPVVGVTANALAEEKQRCLESGMDSCLSKPV 928
Query: 122 RIKELR 127
+ L+
Sbjct: 929 TLDVLK 934
>gi|156933160|ref|YP_001437076.1| hybrid sensory kinase in two-component regulatory system with RcsB
and YojN [Cronobacter sakazakii ATCC BAA-894]
gi|156531414|gb|ABU76240.1| hypothetical protein ESA_00970 [Cronobacter sakazakii ATCC BAA-894]
Length = 973
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 6/126 (4%)
Query: 3 PASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN 62
PASS+ A ++ + +LVVDD PI R+L L Y+ N AL++L SKN
Sbjct: 838 PASSTSAEQNE---DMMILVVDDHPINRRLLADQLGTLGYQCRTANDGVDALNVL--SKN 892
Query: 63 GYDIVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DIV+SDV+MP+MDG++L +++ L M LPV+ ++ + ++ + + G + L KP+
Sbjct: 893 HIDIVLSDVNMPNMDGYRLTQRIRELGMTLPVVGVTANALAEEKQRCLESGMDSCLSKPV 952
Query: 122 RIKELR 127
+ L+
Sbjct: 953 TLDVLK 958
>gi|428779964|ref|YP_007171750.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Dactylococcopsis salina PCC 8305]
gi|428694243|gb|AFZ50393.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Dactylococcopsis salina PCC 8305]
Length = 244
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E A+ ++N D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEAITTF--NENNPDLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|432333857|ref|ZP_19585599.1| two-component response regulator PhoP [Rhodococcus wratislaviensis
IFP 2016]
gi|430779244|gb|ELB94425.1| two-component response regulator PhoP [Rhodococcus wratislaviensis
IFP 2016]
Length = 238
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P RVLVVDD+P L +L LR +EV + LD R + D VI DV MP
Sbjct: 8 PVEARVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRP--DAVILDVMMP 65
Query: 75 DMDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
MDGF L +++ + +D PV+ ++ +D + G+T GA +Y+ KP ++E+
Sbjct: 66 GMDGFGLLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEV 118
>gi|334136457|ref|ZP_08509922.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF7]
gi|333605985|gb|EGL17334.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF7]
Length = 1066
Score = 68.9 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDDDP+ L +L +L Y V AL +L NG+D+VISDV MP M G+
Sbjct: 719 ILVVDDDPVNLTVLRNLLASEGYRVETAASGREALSLL--DGNGWDLVISDVMMPLMSGY 776
Query: 80 KLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
+L + +LPV++++ QD+ G GA +Y+ KP+ +L+
Sbjct: 777 ELTWTIRGRHTLAELPVLLLTARSSPQDITAGFLAGANDYVTKPLGAYDLK 827
>gi|308913672|gb|ADO51646.1| TOC1b [Zea mays]
Length = 488
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D D R + ++L C Y VT +++L DI++++V +P
Sbjct: 28 VRILLCDGDASSSREVLRLLCNCSYHVTCAKSPRQVINILNYEGGEIDIILAEVDLPVSK 87
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
FK+ + + DL P+IMMS V+K + GA YL+KP+R EL N+W HV
Sbjct: 88 CFKMLKYIARNKDLRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRTNELLNLWTHV 146
>gi|390445346|ref|ZP_10233096.1| winged helix family two component transcriptional regulator
[Nitritalea halalkaliphila LW7]
gi|389662465|gb|EIM74030.1| winged helix family two component transcriptional regulator
[Nitritalea halalkaliphila LW7]
Length = 231
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+V+DDP IL + L ++ T C E + R K +D+++ DV MP DG
Sbjct: 6 RILIVEDDPNLGDILHEYLEMKGFQATLCRDGEEGWN--RFKKGAFDLLVLDVMMPKKDG 63
Query: 79 FKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
F L +++ LE ++P+I ++ +DV+ G+ GA +Y+ KP ++EL
Sbjct: 64 FTLGKEIKQLEPEIPIIYLTAKNQKEDVIAGLKLGADDYMTKPFSMEEL 112
>gi|376296117|ref|YP_005167347.1| response regulator receiver protein [Desulfovibrio desulfuricans
ND132]
gi|323458678|gb|EGB14543.1| response regulator receiver protein [Desulfovibrio desulfuricans
ND132]
Length = 132
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVLVVDD+P +L+++++ L K V E AL LR +N D+VI DV MP +
Sbjct: 4 IRVLVVDDEPDFLKLIQRRLTKRNVHVDTVTNGEAALAFLR--ENPVDVVILDVRMPGLS 61
Query: 78 GFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
G +++ D VIM++ G Q ++G++ GA +Y+LKP I L
Sbjct: 62 GIDTLKEIRKRFRDTEVIMLTGHGSLQSGIEGISLGAYDYILKPFSIDNL 111
>gi|403381658|ref|ZP_10923715.1| two-component hybrid sensor and regulator [Paenibacillus sp. JC66]
Length = 1052
Score = 68.9 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 1 MSPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS 60
++P SSS + + + +L VDDDP+ L++L +L K + + + AL+ R++
Sbjct: 708 LTPLSSSTPLVAK--GTVHILAVDDDPVNLKVLTSILEKDEFHIETASSGVEALE--RLN 763
Query: 61 KNGYDIVISDVHMPDMDGFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYL 117
+ +D++I DV MP M G+ ++V E +LPV++++ QD+ G GA +Y+
Sbjct: 764 ERPWDLLIVDVMMPYMSGYDFTKRVREEFSISELPVLLLTARSQPQDIYTGFLSGANDYV 823
Query: 118 LKPIRIKELR 127
KP+ EL+
Sbjct: 824 TKPVDALELQ 833
>gi|308272553|emb|CBX29157.1| Acetoacetate metabolism regulatory protein atoC [uncultured
Desulfobacterium sp.]
Length = 445
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LV+DDD + +L++ L + Y+V C A+ AL + Y+++ISD+ MP+ DG
Sbjct: 8 RILVIDDDLVACEVLQETLIRAQYDVDICTSAKEALG---KDLSSYNLLISDIRMPEADG 64
Query: 79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
L QV + +LPVIM++ G + M+ + GA +Y+ KP + +R
Sbjct: 65 LNLLHQVQKQWPELPVIMVTAYGSLETTMESLRLGASDYISKPFSPEAIR 114
>gi|302817481|ref|XP_002990416.1| pseudo response regulator [Selaginella moellendorffii]
gi|300141801|gb|EFJ08509.1| pseudo response regulator [Selaginella moellendorffii]
Length = 592
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
FP GL VLV D + +L+ C Y VT E AL + K + + D
Sbjct: 12 FPKGLHVLVAIADGDDREEISGILQSCSYRVTAFTSEEDALAAIEKPKTPFHAAMVDATN 71
Query: 74 PDM-DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
D+ DGFK+ E +L VIM+S + +M+ ++ GA ++L KP ++L+NIWQH
Sbjct: 72 RDIFDGFKVLEAA---KELAVIMISSTEDIETMMRAISLGAADFLQKPFSEEKLKNIWQH 128
Query: 133 VAQQ 136
VA++
Sbjct: 129 VARK 132
>gi|6996313|emb|CAB75508.1| ABI3-interacting protein, AIP1 [Arabidopsis thaliana]
Length = 618
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D+D L + +L +C Y+VT A +D L DI+++++ +P
Sbjct: 19 VRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIILAEIDLPMAK 78
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G K+ + + DL PVIMMS V+K + GA +YL+KP+ EL N+W H+
Sbjct: 79 GMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLLTNELLNLWTHM 137
>gi|303326614|ref|ZP_07357056.1| response regulator [Desulfovibrio sp. 3_1_syn3]
gi|345890501|ref|ZP_08841371.1| hypothetical protein HMPREF1022_00031 [Desulfovibrio sp.
6_1_46AFAA]
gi|302862602|gb|EFL85534.1| response regulator [Desulfovibrio sp. 3_1_syn3]
gi|345047687|gb|EGW51549.1| hypothetical protein HMPREF1022_00031 [Desulfovibrio sp.
6_1_46AFAA]
Length = 126
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 68/114 (59%), Gaps = 5/114 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLR--MSKNG--YDIVISDVHM 73
+RVL VDD+ +L+++EK L + EV+ + ALDML +++ G + +V+ DV M
Sbjct: 1 MRVLFVDDEVEFLQLMEKRLSRRGMEVSTAPDGQSALDMLGAVLAEGGEMFKVVVMDVRM 60
Query: 74 PDMDGFK-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
P MDG + L +LPVI+++ C ++G+ GA +Y+LKP+ I EL
Sbjct: 61 PGMDGLETLRHMKAKAPELPVILLTGHACMGVAVQGMDLGAYDYMLKPVSISEL 114
>gi|387888623|ref|YP_006318921.1| capsular synthesis regulator component C RcsC [Escherichia blattae
DSM 4481]
gi|414592690|ref|ZP_11442339.1| colanic acid biosynthesis two-component histidine kinase RcsC
[Escherichia blattae NBRC 105725]
gi|386923456|gb|AFJ46410.1| capsular synthesis regulator component C RcsC [Escherichia blattae
DSM 4481]
gi|403196171|dbj|GAB79991.1| colanic acid biosynthesis two-component histidine kinase RcsC
[Escherichia blattae NBRC 105725]
Length = 949
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLR-MSKNGYDIVISDVHMPDMDG 78
+LVVDD PI R+L L Y+ C A+ +D L +SKN DIV+SDV+MP+MDG
Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQ---CKTAQDGVDALNVLSKNHIDIVLSDVNMPNMDG 883
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
++L +++ L + LPVI ++ + ++ + + G + L KP+ + ++ A Q
Sbjct: 884 YRLTQRIRQLGLTLPVIGVTANALAEERQRCLASGMDSCLSKPVTLDVIKKTLSAFAAQV 943
Query: 138 KPFEES 143
+ ES
Sbjct: 944 RKGRES 949
>gi|419175709|ref|ZP_13719547.1| his Kinase A domain protein [Escherichia coli DEC7B]
gi|378033112|gb|EHV95692.1| his Kinase A domain protein [Escherichia coli DEC7B]
Length = 949
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 5 SSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY 64
S+ AVSD + +LVVDD PI R+L L Y+ N AL++L SKN
Sbjct: 814 STDKAVSDN--DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNHI 869
Query: 65 DIVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
DIV+SDV+MP+MDG++L +++ L + LPVI ++ + ++ + + G + L KP+ +
Sbjct: 870 DIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929
Query: 124 KELRNIWQHVAQQPKPFEES 143
++ A++ + ES
Sbjct: 930 DVIKQTLTVYAERVRKLRES 949
>gi|359434827|ref|ZP_09225072.1| two-component system, NtrC family, response regulator YfhA
[Pseudoalteromonas sp. BSi20652]
gi|357918524|dbj|GAA61321.1| two-component system, NtrC family, response regulator YfhA
[Pseudoalteromonas sp. BSi20652]
Length = 449
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+VL+VDDD L++L + YEVT C AL +L+ +D VI+D+ M +MDG
Sbjct: 10 KVLLVDDDASLLKLLAIRIESKGYEVTTCESGLAALQILK--SQVFDAVITDLRMDEMDG 67
Query: 79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
LH Q+ LPVIMM+ G D ++ G ++ KP+ EL
Sbjct: 68 MALHRQLQSRYPALPVIMMTAHGSIPDAVEATKQGIFAFITKPVDKDEL 116
>gi|281308392|gb|ADA58344.1| pseudo-response regulator 1b [Brassica rapa]
Length = 509
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D+D L + +L +C Y+VT A +D L DI+++++ +P
Sbjct: 19 VRILLCDNDSKSLGDVFTLLSQCSYQVTSVKSARQVIDALNAEGPDIDIILAEIDLPMAK 78
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G K+ + + DL PVIMMS V+K + GA +YL+KP+R EL N+W ++
Sbjct: 79 GMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNELLNLWTYM 137
>gi|271499646|ref|YP_003332671.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii
Ech586]
gi|270343201|gb|ACZ75966.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii
Ech586]
Length = 962
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 6 SSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
S+V+ S +R+LVVDD PI R+L L Y+V N ALD+L +KN D
Sbjct: 826 STVSYSRTENGDIRLLVVDDHPINRRLLADQLGSLGYQVITANDGLDALDVL--AKNPVD 883
Query: 66 IVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIK 124
IV++DV+MP+MDG++ +++ + LPVI ++ + ++ + + G N L KP+ +
Sbjct: 884 IVLTDVNMPNMDGYRFTQRLREMGQTLPVIGVTANALAEERQRCLQAGMDNCLSKPVTLD 943
Query: 125 ELR 127
L+
Sbjct: 944 TLQ 946
>gi|158320763|ref|YP_001513270.1| two component transcriptional regulator [Alkaliphilus oremlandii
OhILAs]
gi|158140962|gb|ABW19274.1| two component transcriptional regulator, winged helix family
[Alkaliphilus oremlandii OhILAs]
Length = 229
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 78/148 (52%), Gaps = 9/148 (6%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
G ++L+VDD+P+ ++ L+ L + YE+ E AL+ +++ D+++ D+ +P +
Sbjct: 2 GYKILIVDDEPLLVKGLKYSLEQDGYEILTAFDGEEALEKAKIANA--DLILLDLMLPKI 59
Query: 77 DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQH 132
DG ++ +Q+ L P+IM++ G + G+ +GA +YL KP I EL + + +
Sbjct: 60 DGLQVCQQIRLNSQTPIIMLTAKGEDMSKILGLEYGADDYLTKPFNILELKARIKAVLRR 119
Query: 133 VAQQPKPFEE---SDDSYSVNQGNWRTS 157
KP EE D + +N + S
Sbjct: 120 YQSSDKPIEERVIKIDDFKINTLGRKVS 147
>gi|113474512|ref|YP_720573.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
gi|110165560|gb|ABG50100.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
Length = 1133
Score = 68.9 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 5/124 (4%)
Query: 7 SVAVSDQFPAG-LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
S + + P G VLVVDD+PI +++L L+ Y+VT+ + AL L + N +D
Sbjct: 710 SKPLGSKIPNGDFHVLVVDDEPINIQVLNNYLKANNYQVTQALSGKEALAALENNHN-FD 768
Query: 66 IVISDVHMPDMDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
+++ DV MP+M G+++ Q+ + LPV+M++ D++ G GA +YL KP
Sbjct: 769 LILLDVMMPNMSGYEVCSQIREKYPAQSLPVLMLTAKNQIADLVMGFQFGANDYLTKPFA 828
Query: 123 IKEL 126
EL
Sbjct: 829 KDEL 832
>gi|407795469|ref|ZP_11142428.1| DNA-binding response regulator [Salimicrobium sp. MJ3]
gi|407020354|gb|EKE33067.1| DNA-binding response regulator [Salimicrobium sp. MJ3]
Length = 224
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+ DDDP +++ + L YE + + A+ A+ +L K+G D+ + DV MP DG+
Sbjct: 4 ILITDDDPYIRKLVSRTLESSGYETYRASNADEAISVL--DKSGIDLAVVDVMMPGTDGY 61
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L + V + LPVI+++ G D +G G +Y++KP KEL
Sbjct: 62 ALTKIVTEDYGLPVILLTAKGELHDKEQGYRAGTDDYIVKPFEPKEL 108
>gi|308175221|ref|YP_003921926.1| hypothetical protein BAMF_3330 [Bacillus amyloliquefaciens DSM 7]
gi|384161105|ref|YP_005543178.1| hypothetical protein BAMTA208_17665 [Bacillus amyloliquefaciens
TA208]
gi|307608085|emb|CBI44456.1| Uncharacterized transcriptional regulatory protein RBAM_032050
[Bacillus amyloliquefaciens DSM 7]
gi|328555193|gb|AEB25685.1| hypothetical protein BAMTA208_17665 [Bacillus amyloliquefaciens
TA208]
Length = 225
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LV DDD ++ M+ + ++V + E A+ ++ + D++I DV MP MDGF
Sbjct: 4 ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTH--IDLIILDVMMPKMDGF 61
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ E V D+P++M++ G T D ++G T GA +YL+KP EL
Sbjct: 62 EVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLEL 108
>gi|316935701|ref|YP_004110683.1| Fis family two component sigma54 specific transcriptional regulator
[Rhodopseudomonas palustris DX-1]
gi|315603415|gb|ADU45950.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Rhodopseudomonas palustris DX-1]
Length = 495
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 65/111 (58%), Gaps = 2/111 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN-GYDIVISDVHMPDMD 77
R+L+ DDD + R++E M++KC YE + + A+D L + D V+ D+ MP +D
Sbjct: 4 RILIADDDAVQRRLVENMVQKCGYETITVDSGDAAVDALTAPDSPAIDAVVLDLVMPGLD 63
Query: 78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
G + ++ +D+PVI+ + G +V+ + GA ++++KP+ I+ L+
Sbjct: 64 GLGVLSKIRASGIDVPVIVQTAHGGIDNVVSAMRAGAHDFVVKPVGIERLQ 114
>gi|119715669|ref|YP_922634.1| response regulator receiver [Nocardioides sp. JS614]
gi|119536330|gb|ABL80947.1| response regulator receiver [Nocardioides sp. JS614]
Length = 248
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 7 SVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDI 66
SV + D G R+LVVDDD +L +LR+ +E R ++A++ R + D+
Sbjct: 16 SVPLGDGLSKG-RILVVDDDASLAEMLTIVLRQEGFESHMVARGDLAMEAFREYRP--DL 72
Query: 67 VISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
V+ D+ +P DG + +++ E +P++M++ G T DV+ G+ GA +Y++KP + KEL
Sbjct: 73 VLLDLMLPGKDGIDVCKEIRAESGVPIVMLTAKGDTVDVVVGLESGADDYVVKPFKPKEL 132
>gi|299541675|ref|ZP_07052005.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
gi|424737682|ref|ZP_18166132.1| DNA-binding response regulator [Lysinibacillus fusiformis ZB2]
gi|298725770|gb|EFI66404.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
gi|422948321|gb|EKU42704.1| DNA-binding response regulator [Lysinibacillus fusiformis ZB2]
Length = 223
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+++LVVDDD L+++ L K Y+V A+ AL +L N D+ + DV MP MD
Sbjct: 1 MKILVVDDDVHILQLVNIYLTKEGYQVLLAENAKQALALL--EGNLPDLAVVDVMMPGMD 58
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
GF L E + + D+PV++++ G +D +G G+ +Y++KP KEL
Sbjct: 59 GFTLTEYLTQDYDIPVLLLTAKGELEDKERGFLAGSDDYVVKPFEPKEL 107
>gi|261253471|ref|ZP_05946044.1| response regulator [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|417955974|ref|ZP_12598972.1| DNA-binding response regulator [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260936862|gb|EEX92851.1| response regulator [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342811494|gb|EGU46531.1| DNA-binding response regulator [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 240
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCN-----RAEIALDMLRMSKNGY-DIVISDVH 72
++LVVDDD +LE+ L K Y+V+ N +AEI L NGY D+++ DV
Sbjct: 4 KILVVDDDQEICELLEEYLTKQSYQVSTVNDGEQMKAEIEL-------NGYPDLILLDVM 56
Query: 73 MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
+P DGF L +Q + +P+IM++ D + G+ GA +Y+ KP + L +
Sbjct: 57 LPGDDGFTLCQQTRRQSSVPIIMLTAVSDDTDQIIGLEIGADDYIAKPFNPRHLNARIKA 116
Query: 133 VAQQPKPFEE---SDDSYSVNQGNWR 155
V ++ P EE S + S+ G+W+
Sbjct: 117 VLRRASPAEELPASSTAKSIVFGDWQ 142
>gi|379025846|dbj|BAL63700.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
gi|379025848|dbj|BAL63701.1| pseudo-response regulator [Triticum turgidum subsp. dicoccon]
Length = 664
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM 76
+RVL+V+ D +++ +LR C+Y+ A L+ ++ D+V+++V M +
Sbjct: 35 IRVLLVETDDSTRQVVTALLRHCMYQFIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 94
Query: 77 DGFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
G L HE + D+PVIMMS V+ +++GA ++L KPIR EL+N+W
Sbjct: 95 SGIDLLGRIMNHE---VCKDIPVIMMSSHDSMGTVLSCLSNGAADFLAKPIRKNELKNLW 151
Query: 131 QHV 133
HV
Sbjct: 152 AHV 154
>gi|297733942|emb|CBI15189.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
+ +R+L+ D+D + +L C Y+VT A +D L + DI++++V +P
Sbjct: 23 SNVRILLCDNDTKSSDEIFTLLCGCSYQVTSVRSARQVIDALNAEGHDIDIILAEVDLPM 82
Query: 76 MDGFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
G K+ + + + +L P+IMMS V+K + GA +YL+KP+R EL N+W H
Sbjct: 83 TKGMKMLKYIMRDKELRRIPIIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 142
Query: 133 V 133
+
Sbjct: 143 M 143
>gi|269792328|ref|YP_003317232.1| winged helix family two component transcriptional regulator
[Thermanaerovibrio acidaminovorans DSM 6589]
gi|269099963|gb|ACZ18950.1| two component transcriptional regulator, winged helix family
[Thermanaerovibrio acidaminovorans DSM 6589]
Length = 226
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+++D+ ++L + + +EV LD++R K YD VI D+ +P+MD
Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGK--YDCVILDIMLPEMD 58
Query: 78 GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
GF++ +QV E D+PVIM++ +D + G+ GA +YL KP KEL
Sbjct: 59 GFEVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKEL 108
>gi|154496221|ref|ZP_02034917.1| hypothetical protein BACCAP_00506 [Bacteroides capillosus ATCC
29799]
gi|150274304|gb|EDN01381.1| response regulator receiver domain protein [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 230
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDD+ ++ K R YE+ +C A++ R + G D+VI D+ +P +DG
Sbjct: 4 RILIVDDEDKMRSLVAKHARHAGYEIAECADGHAAVE--RCREGGVDLVILDIMLPGLDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
++ + D+PV+M+SV G QD ++G G ++++KP +EL + ++ +
Sbjct: 62 YEALRAIRTFSDVPVLMLSVHGEEQDKVRGFKLGVDDFMVKPFSPRELMYRVAAILKRRR 121
Query: 139 PFEESD 144
P D
Sbjct: 122 PAPAPD 127
>gi|91772718|ref|YP_565410.1| response regulator receiver [Methanococcoides burtonii DSM 6242]
gi|91711733|gb|ABE51660.1| PhoP response regulator receiver [Methanococcoides burtonii DSM
6242]
Length = 170
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 67/112 (59%), Gaps = 5/112 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+VL+VDD+P + ++ L Y V + N +A D L+ + D+++ DV MPDMDG
Sbjct: 49 KVLIVDDEPDAVIATKRALEADGYNVIEANNGTMAFDALK--SDIPDVILLDVMMPDMDG 106
Query: 79 FKLHEQVG---LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
F++ ++ L ++PVIM++ G D ++G+ GA +Y+ KP +KEL+
Sbjct: 107 FEVCRRLKEEPLYENIPVIMLTAKGEINDKVEGLDIGADDYMTKPFNLKELK 158
>gi|427707723|ref|YP_007050100.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc sp. PCC 7107]
gi|427360228|gb|AFY42950.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc sp. PCC 7107]
Length = 429
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 5 SSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY 64
S + D+ P G+ VLVVDD+P L++L L + +EV E AL L S N
Sbjct: 6 SEQTYICDRHPRGI-VLVVDDNPANLQVLSSFLDESNFEVWAVRSGEKALQKLN-SDNLP 63
Query: 65 DIVISDVHMPDMDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
D+++ DV MP MDGF+ + + + D+P+I M+ T D +KG+ GA +Y+ KP
Sbjct: 64 DLILLDVMMPGMDGFETCQHLKNDPRSEDIPIIFMTALSETDDKVKGLRLGAVDYITKPF 123
Query: 122 RIKELRNIWQHVAQ 135
+ +E+ +H Q
Sbjct: 124 QHEEVLVRIEHHLQ 137
>gi|238797459|ref|ZP_04640958.1| Sensor kinase protein rcsC [Yersinia mollaretii ATCC 43969]
gi|238718730|gb|EEQ10547.1| Sensor kinase protein rcsC [Yersinia mollaretii ATCC 43969]
Length = 1001
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
A +++LVVDD PI R+L L Y+V N AL +L S N DIV++DV+MP+
Sbjct: 876 ADMQILVVDDHPINRRLLADQLSALGYQVITANDGLDALAVL--SANNVDIVLTDVNMPN 933
Query: 76 MDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
MDG++L +++ L PVI ++ + + + + G N L KP+ + LR + ++ +
Sbjct: 934 MDGYRLTQRLRQLNHHFPVIGVTANALAESKQRCIEAGMDNCLSKPVTLDTLRQMLRYYS 993
>gi|237718503|ref|ZP_04548984.1| two-component system sensor histidine kinase [Bacteroides sp.
2_2_4]
gi|229452210|gb|EEO58001.1| two-component system sensor histidine kinase [Bacteroides sp.
2_2_4]
Length = 795
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 9/115 (7%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
GLRVL++DDDP L + +M R+ E C +D LR +N YD++++D+ MPDM
Sbjct: 553 GLRVLLLDDDPRQLSLTREMFRRNRAECDCCTDCRKVVDKLR--ENDYDVLLTDIRMPDM 610
Query: 77 DGFKL-----HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DGF+L + +PVI ++ D + + ++ G Y+ KP R++EL
Sbjct: 611 DGFELLGLLRSSNIERARRIPVIALTAD--VESEAEYLSGGFAGYVRKPFRMEEL 663
>gi|158338752|ref|YP_001519929.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|359462118|ref|ZP_09250681.1| two-component transcriptional regulator [Acaryochloris sp. CCMEE
5410]
gi|158308993|gb|ABW30610.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
Length = 243
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 6/146 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L Y+V E A+D + D+V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEAIDTFHHAIP--DLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVA 134
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL R++ + V+
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVS 124
Query: 135 QQPKPFEESDDSYSVNQGNWRTSNRR 160
+ S SV+ T+ R+
Sbjct: 125 KNGNSGIPSSGVISVHTLKIDTNKRQ 150
>gi|268611303|ref|ZP_06145030.1| two component transcriptional regulator, winged helix family
protein [Ruminococcus flavefaciens FD-1]
Length = 228
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD I+ +ML C YE + AE A D+L S + +++ D+++PD +G
Sbjct: 5 RILIVDDDTDLSFIISEMLEGCGYESLRAASAEEAFDIL--SHKSFHLILLDINLPDSEG 62
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
F++ Q+ D+PVI S D ++ G +YL KP +KEL
Sbjct: 63 FEICRQLRKVSDVPVIFASARTAEDDRIRSFDIGGDDYLPKPYSMKEL 110
>gi|427725815|ref|YP_007073092.1| winged helix family two component transcriptional regulator
[Leptolyngbya sp. PCC 7376]
gi|427357535|gb|AFY40258.1| two component transcriptional regulator, winged helix family
[Leptolyngbya sp. PCC 7376]
Length = 242
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD+ RILE L YEV E AL + D+V+ DV MP +DG
Sbjct: 7 RILVVDDEASIRRILETRLSMIGYEVVTAADGEEALGTF--TDADPDLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>gi|320333135|ref|YP_004169846.1| response regulator receiver and SARP domain-containing protein
[Deinococcus maricopensis DSM 21211]
gi|319754424|gb|ADV66181.1| response regulator receiver and SARP domain protein [Deinococcus
maricopensis DSM 21211]
Length = 343
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVLVVDDD L+++ +L + +EV C ALD+L + D+VISDV MP M G
Sbjct: 3 RVLVVDDDAAILKLVSVILTRAGHEVRTCAHPNEALDLLNVMTP--DLVISDVVMPYMTG 60
Query: 79 FKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ E V + DLP +++S DV +G+ GA +YL KP +L
Sbjct: 61 YEFLEHVRAQPNMADLPFMLLSSHAERDDVRRGMNLGADDYLPKPFTPHDL 111
>gi|302337934|ref|YP_003803140.1| nitrogen specific signal transduction histidine kinase NtrB
[Spirochaeta smaragdinae DSM 11293]
gi|301635119|gb|ADK80546.1| signal transduction histidine kinase, nitrogen specific, NtrB
[Spirochaeta smaragdinae DSM 11293]
Length = 900
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
VL VDD+ + L ML C YEVT + + A+++LR + + YDI + D+ MP+ G
Sbjct: 775 VLFVDDEEMLLSNGSAMLHACGYEVTTASSGKNAMELLRKAPDRYDIAVVDIIMPEFSGL 834
Query: 80 KLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
+ + + E+ LPVI+ S + + + +G+ GA +L KP I+ L ++ +A K
Sbjct: 835 ECLKAIQKEVPSLPVILTSGNSGDEQISEGIEAGAAAFLPKPYSIETLSSL---IADTLK 891
Query: 139 P 139
P
Sbjct: 892 P 892
>gi|149190144|ref|ZP_01868420.1| sensory box sensor histidine kinase/response regulator [Vibrio
shilonii AK1]
gi|148836033|gb|EDL52994.1| sensory box sensor histidine kinase/response regulator [Vibrio
shilonii AK1]
Length = 1128
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 5/115 (4%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P G +LV DD+P+ LRILE LR Y+V LD++ K D+++ D+ MP
Sbjct: 719 PDGPVLLVADDEPVNLRILESFLRLEGYQVKLAKDGLETLDIIEHEKP--DLLLLDIMMP 776
Query: 75 DMDGFKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
M GF++ E + + D LP+IM++ ++D ++G GA +YL KP EL
Sbjct: 777 GMSGFEVCETIREQYDHAALPIIMLTALNQSEDRVRGFELGANDYLAKPFSKPEL 831
>gi|379025638|dbj|BAL63596.1| pseudo-response regulator [Triticum durum]
Length = 266
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP--- 74
+RVL+V+ D +++ +LR C+Y+V A L+ ++ D+V+++V M
Sbjct: 38 IRVLLVETDDSTRQVVTALLRHCMYQVIPAENGHQAWAYLQDMQSNIDLVLTEVFMHGGL 97
Query: 75 ---DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
D+ G ++ +V D+PVIMMS V+ +++GA +L KPIR EL+N+W
Sbjct: 98 SGIDLLGRIMNHEVC--KDIPVIMMSSHDSMGTVLSCLSNGAAEFLAKPIRKNELKNLWA 155
Query: 132 HV 133
HV
Sbjct: 156 HV 157
>gi|153812114|ref|ZP_01964782.1| hypothetical protein RUMOBE_02510 [Ruminococcus obeum ATCC 29174]
gi|149831769|gb|EDM86855.1| response regulator receiver domain protein [Ruminococcus obeum ATCC
29174]
Length = 219
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 65/109 (59%), Gaps = 5/109 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTK-CNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+L++DD+ L +++ LRK + VT + A++ +D L N YD++I D+ MPD+DG
Sbjct: 4 ILMIDDEQAILELVKNGLRKDGHFVTTYTSAAQVPIDKL----NRYDLIILDIMMPDVDG 59
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
F +++ +D P++ ++ D+ G+ GA +YL KP RI ELR
Sbjct: 60 FSYCDKIRSLVDCPILFLTAKTMEHDITFGLGLGADDYLTKPFRIAELR 108
>gi|262274965|ref|ZP_06052776.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia
hollisae CIP 101886]
gi|262221528|gb|EEY72842.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia
hollisae CIP 101886]
Length = 1125
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P G +LVVDD+P+ L+IL LR Y V A++ + M K +++ DV MP
Sbjct: 714 PDGPLILVVDDEPVNLQILNNFLRLEGYRVKAVENGRQAIESVTMEKPA--LMLLDVMMP 771
Query: 75 DMDGFK----LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ G++ L E+ +LP+IM+S G QD +KG GA +YL KP EL
Sbjct: 772 ELSGYEVCTHLRERYS-RAELPIIMLSALGQVQDKVKGFDAGANDYLTKPFNKDEL 826
>gi|170758276|ref|YP_001787361.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
gi|169405265|gb|ACA53676.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
Length = 221
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 76/142 (53%), Gaps = 2/142 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVV+DD I+ ++L++ Y V IA++M R + +D++I DV +P +DG
Sbjct: 4 RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFR--RGEFDLIILDVMLPKIDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
F + E + E +P+IM++ G +D MKG +Y++KP I L + V ++
Sbjct: 62 FVVCEIIRKESSMPIIMLTALGEEEDEMKGFELKVDDYIIKPFSINLLIKRVEAVLRRAN 121
Query: 139 PFEESDDSYSVNQGNWRTSNRR 160
EE++ + + + SN +
Sbjct: 122 GLEENNSTLTFEEITIYPSNYK 143
>gi|91788333|ref|YP_549285.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
gi|91697558|gb|ABE44387.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
Length = 1049
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 5/106 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+++L+V+D P + L+ +L + YEV +AL ML + ++ISDV MP+MD
Sbjct: 12 VKILIVEDSPTQAQQLQHILEQEGYEVGIARNGRLALKMLPQFRPA--LIISDVIMPEMD 69
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
G++L ++ + DL PVI+++ QDV++G+ GA N++LKP
Sbjct: 70 GYELSRRIKTQPDLRNIPVILVTTMSDPQDVIRGLECGADNFVLKP 115
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
G VL+VDD P+ +L + + Y AL + + G IVI+D +MP+M
Sbjct: 794 GTLVLLVDDHPVNRMLLMRQVHVLGYAAESAKNGVEALAKWQSRRFG--IVITDCNMPEM 851
Query: 77 DGFKLHEQV-GLEMD-----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
+G+ L + GLE +P+I + + + + G +YL+KP+ + +LR
Sbjct: 852 NGYDLARSIRGLESGNEGKHVPIIACTANALSGEAESCFAAGMDDYLVKPVELSQLR 908
>gi|319955614|ref|YP_004166881.1| two component transcriptional regulator, winged helix family
[Cellulophaga algicola DSM 14237]
gi|319424274|gb|ADV51383.1| two component transcriptional regulator, winged helix family
[Cellulophaga algicola DSM 14237]
Length = 232
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+++DDP +++LE L +Y K ++ L M +N YD+++ D+ +P MDG
Sbjct: 3 QILIIEDDPEIIKLLEIHLTDLIYTTAKAMDGKVGLAM--ALENSYDLILLDLTLPTMDG 60
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP- 137
++ +++ + + P+IM++ D + G+ GA +Y+ KP I+EL + V ++
Sbjct: 61 IEICKKIRSQKNTPIIMLTAKSEEIDRVLGLEIGADDYITKPFSIRELLARVKAVLRRTD 120
Query: 138 -KPFEESDDSYSVNQGNWRTSNRRK 161
KP + D S + +G ++RK
Sbjct: 121 IKPIPQKDTSSILAEGLSIDIDKRK 145
>gi|226364243|ref|YP_002782025.1| two-component response regulator PhoP [Rhodococcus opacus B4]
gi|226242732|dbj|BAH53080.1| two-component response regulator PhoP [Rhodococcus opacus B4]
Length = 240
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P RVLVVDD+P L +L LR +EV + LD R + D VI DV MP
Sbjct: 10 PVEARVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRP--DAVILDVMMP 67
Query: 75 DMDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
MDGF L +++ + +D PV+ ++ +D + G+T GA +Y+ KP ++E+
Sbjct: 68 GMDGFGLLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEV 120
>gi|406895332|gb|EKD39927.1| hypothetical protein ACD_75C00243G0001 [uncultured bacterium]
Length = 713
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 6 SSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
+ +V ++ +R+L+ +D+P+ ++ ML K Y+VT + A++ + +G+D
Sbjct: 579 TQYSVREELKQSIRILLAEDNPVNQKLAMMMLSKAGYQVTVVPNGKAAVETFTGTPDGFD 638
Query: 66 IVISDVHMPDMDGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
++ D+ MP+MDG++ Q+ G ++P+I M+ + D G +Y++KPI+
Sbjct: 639 TILMDIQMPEMDGYEATRQIRRQGFR-EIPIIAMTANAMKGDKELCFAAGMNDYIMKPIK 697
Query: 123 ---IKELRNIWQHV 133
+ ++ W H+
Sbjct: 698 REIVFQILEKWLHI 711
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,940,739,274
Number of Sequences: 23463169
Number of extensions: 116578162
Number of successful extensions: 629779
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 19112
Number of HSP's successfully gapped in prelim test: 76667
Number of HSP's that attempted gapping in prelim test: 527538
Number of HSP's gapped (non-prelim): 101297
length of query: 184
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 51
effective length of database: 9,238,593,890
effective search space: 471168288390
effective search space used: 471168288390
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 72 (32.3 bits)