BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029986
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 5 SSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY 64
S+ AVSD + +LVVDD PI R+L L Y+ N AL++L SKN
Sbjct: 119 STDKAVSDN--DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNHI 174
Query: 65 DIVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
DIV+SDV+MP+MDG++L +++ L + LPVI ++ + ++ + + G + L KP+ +
Sbjct: 175 DIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 234
Query: 124 KELRNIWQHVAQQPKPFEES 143
++ A++ + +S
Sbjct: 235 DVIKQTLTLYAERVRKSRDS 254
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
AVSD + +LVVDD PI R+L L Y+ N AL++L SKN DIV+
Sbjct: 2 AVSDN--DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNHIDIVL 57
Query: 69 SDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
SDV+MP+MDG++L +++ L + LPVI ++ + ++ + + G + L KP+ + ++
Sbjct: 58 SDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIK 117
Query: 128 NIWQHVAQQPKPFEES 143
A++ + +S
Sbjct: 118 QTLTLYAERVRKSRDS 133
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD+ RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 59
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M + + ++++ GA Y++KP L
Sbjct: 60 DGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAATLE 113
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++V+ ++++ GA Y++KP L
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVKPFTAATLE 117
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD+ RI +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 59
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 60 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLE 113
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 6 LKFLVVDDGGTGRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + G LPV+M++ + ++++ GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ + ++V+ GA Y++KP L
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAATLE 116
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD+ RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + G LPV+M++ ++++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPF 110
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + G LPV+M++ + ++++ GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD+ RI+ +L++ + AE +D L ++ GY VISD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWRMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + G LPV+M++ ++++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKPF 110
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 7 LKFLVVDDFSTGRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 64
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + G LPV+M++ + ++++ GA Y++KP
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 112
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + G LPV+M++ + ++++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLE 116
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLE 117
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLE 116
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVKPFTAATLE 117
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + G LPV+M++ + ++++ GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++++ ++++ GA Y++KP L
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVKPFTAATLE 117
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWRMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + G LPV+M++ + ++++ GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD+ RI+ +L++ + AE +D L ++ GY VISD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWMMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + G LPV+M++ ++++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPF 110
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKPFTAATLE 117
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD MP+M
Sbjct: 5 LKFLVVDDQSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWKMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + G LPV+M++ ++++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPF 110
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + G LPV+M+ + ++++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPF 110
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD+ RI+ +L++ + AE +D L ++ GY VISD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWMMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ ++++ GA Y++KP L
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKPFTAATLE 116
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ + ++++ GA +++KP L
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAATLE 116
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWDMPNM 66
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ ++++ GA Y++KP L
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKPFTAATLE 120
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWDMPNM 66
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ ++++ GA Y++KP L
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKPFTAATLE 120
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDDD LE +LR YEV + E AL ++ KN D +I DV +P +DG+
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQ--QIYKNLPDALICDVLLPGIDGY 64
Query: 80 KLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L ++V L LP++ ++ G + G GA +YL KP +EL
Sbjct: 65 TLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQEL 114
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 77 DGFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + LPV+M++ + ++++ GA Y++KP
Sbjct: 63 DGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 5 LKFLVVDKFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + G LPV+M++ + ++++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VIS +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISXWNMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLE 116
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VIS +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISAWNMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLE 116
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 4 LKFLVVDAFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 61
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 62 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLE 115
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWDMPNM 66
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DG +L + + G LPV+M++ ++++ GA Y++KP L
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATL 119
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVV D RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 7 LKFLVVADFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 64
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + G LPV+M++ + ++++ GA Y++KP
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 112
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VIS +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISXWNMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLE 117
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWDMPNM 66
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ ++++ GA Y++KP L
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATLE 120
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
DG +L + + G LPV+M++ + +++ GA Y++KP L +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 134 AQQ 136
++
Sbjct: 124 FEK 126
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ G+ +ISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGFGFIISDWNMPNM 62
Query: 77 DGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
DG +L + + + LPV+M++ + ++++ GA Y++KP L +
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 AQQ 136
++
Sbjct: 123 FEK 125
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M+ + ++++ GA +++KP L
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLE 116
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ G+ +ISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGFGFIISDWNMPNM 63
Query: 77 DGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + + LPV+M++ + ++++ GA Y++KP L
Sbjct: 64 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLE 117
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VIS +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISXWNMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + G LPV+M+ + ++++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPF 110
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD +R+LE L YEV+ AL M +++ DI++ DV MP MDG
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM--AARDLPDIILLDVMMPGMDG 60
Query: 79 FKLHEQVG---LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
F + ++ +PV++++ D ++G+ GA ++L KPI
Sbjct: 61 FTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 106
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD +R+LE L YEV+ AL M +++ DI++ DV MP MDG
Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM--AARDLPDIILLDVMMPGMDG 61
Query: 79 FKLHEQVG---LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
F + ++ +PV++++ D ++G+ GA ++L KPI
Sbjct: 62 FTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 107
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVLVVDD+ + +L L+ +EV ALD R ++ D VI DV P DG
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP--DAVILDVXXPGXDG 82
Query: 79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
F + ++ + +D P + ++ QD + G+T G +Y+ KP ++E+
Sbjct: 83 FGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEV 131
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VIS +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISXWNMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + G LPV+M+ + ++++ GA +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPF 110
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 9/123 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+LV DD +L+++L K ++V N AE LD M++ YD VI D+HMP M+
Sbjct: 15 MRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDA--MAEEDYDAVIVDLHMPGMN 72
Query: 78 GFKLHEQV------GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
G + +Q+ G+ PV+++S D + + GA +L KP+ +L +
Sbjct: 73 GLDMLKQLRVMQASGMRYT-PVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLA 131
Query: 132 HVA 134
+A
Sbjct: 132 DLA 134
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ G+ +I D +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGFGFIICDWNMPNM 62
Query: 77 DGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
DG +L + + + LPV+M++ + ++++ GA Y++KP L +
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 AQQ 136
++
Sbjct: 123 FEK 125
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ ILE LRK YEV + A++M+ + D+++ D+ +P+ DG
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP--DLILLDIMLPNKDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ +V + D+P+IM++ D + G+ GA +Y+ KP +EL
Sbjct: 62 VEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTREL 109
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+VL+VDD + +I+ L+K YEV + +IAL+ ++S+ D+++ D+ MP MDG
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALE--KLSEFTPDLIVLDIMMPVMDG 61
Query: 79 FKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
F + +++ + + +PVI+++ G +D ++ GA + KP
Sbjct: 62 FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPF 107
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ ILE LRK YEV + A++M+ + D+++ D+ +P+ DG
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP--DLILLDIMLPNKDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ +V + D+P+IM++ D + G+ GA +Y+ KP +EL
Sbjct: 62 VEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTREL 109
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVV + + +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 5 LKFLVVGNGGTGKSTVRNLLKELGF--NNVEDAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG +L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLE 116
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 7/139 (5%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+V+D P L+ +L + Y+ A+ L +++ D++ISDV MP+MDG+
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP--DLIISDVLMPEMDGY 67
Query: 80 KLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
L + + DL PVI++++ +DV++ + GA +++ KP + L + + +
Sbjct: 68 ALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127
Query: 137 PKPFEE--SDDSYSVNQGN 153
K EE S +S ++ GN
Sbjct: 128 VKRTEERYSRESITLAFGN 146
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
V ++DDD + +++ L + V+ A AL L S + IVISD+ MP MDG
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGL--SADFAGIVISDIRMPGMDGL 63
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L ++ L+ DLP+I+++ G ++ + GA +++ KP L
Sbjct: 64 ALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRL 111
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
V ++DDD + +++ L + V+ A AL L S + IVISD+ MP MDG
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGL--SADFAGIVISDIRMPGMDGL 63
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L ++ L+ DLP+I+++ G ++ + GA +++ KP L
Sbjct: 64 ALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRL 111
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 5/106 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+VL+VDD + +I+ L+K YEV + +IAL+ ++S+ D+++ + MP MDG
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALE--KLSEFTPDLIVLXIMMPVMDG 61
Query: 79 FKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
F + +++ + + +PVI+++ G +D ++ GA + KP
Sbjct: 62 FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPF 107
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVD RI+ +L++ + AE +D L ++ GY VISD + P+
Sbjct: 5 LKFLVVDKFSTXRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNXPNX 62
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
DG +L + + G LPV+ ++ + ++++ GA +++KP
Sbjct: 63 DGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVKPF 110
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG-YDIVISDVHMPDM 76
+++L+VDD RI++ +LR + T+ A+ L L M K G +D V++D +MP M
Sbjct: 13 MKILIVDDFSTMRRIVKNLLRDLGFNNTQ--EADDGLTALPMLKKGDFDFVVTDWNMPGM 70
Query: 77 DGFKLHEQVGLEMD---LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
G L + + + + LPV+M++ + + +++ G Y++KP L+
Sbjct: 71 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLK 124
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDDD +L +LR ++ AL +R + D+V+ D+ +P M+G
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP--DLVLLDLMLPGMNG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
+ + + +P++M++ T DV+ G+ GA +Y++KP + KE
Sbjct: 65 IDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKE 111
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 15 PAG-LRVLVVDDDPIWLRILEKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVH 72
P G +++LVVDD RI++ L + YE V + A + L + + ++I+D +
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANAD-TKVLITDWN 60
Query: 73 MPDMDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
MP+M+G L ++V + ++P+IM++ +G +V+ + G NY++KP
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 15 PAG-LRVLVVDDDPIWLRILEKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVH 72
P G +++LVVDD RI++ L + YE V + A + L + + ++I+D +
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANAD-TKVLITDWN 60
Query: 73 MPDMDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
MP+M+G L ++V + ++P+IM++ +G +V+ + G NY++KP
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKP 111
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDD+ I++ + K YEV AL+ + DI+I D+ +P++DG
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP--DIIILDLMLPEIDG 60
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++ + + +P++M+S D + G+ GA +Y+ KP +EL+
Sbjct: 61 LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQ 109
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
VL+V+D+ L +LRK +E T AL + G DIV+ D+ +P M G
Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAAL--AEFDRAGADIVLLDLMLPGMSGT 64
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ +Q+ +PVIM++ D + G+ GA +Y+ KP +EL
Sbjct: 65 DVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSAREL 111
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLY-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
++VL+VDD +L L++ + ++T E + + M++N + +VISD +MP M
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKI--MAQNPHHLVISDFNMPKM 64
Query: 77 DGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
DG L + V I+++ G V K GA N L KP I++++ + V
Sbjct: 65 DGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAV 124
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 15 PAG-LRVLVVDDDPIWLRILEKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVH 72
P G +++LVVDD RI++ L + YE V + A + L + + ++I+ +
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANAD-TKVLITAWN 60
Query: 73 MPDMDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120
MP+M+G L ++V + ++P+IM++ +G +V+ + G NY++KP
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
RVL+ +D+ + L +MLR+ YE V + + A+++ + K D+VI DV MP D
Sbjct: 15 RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKP--DLVIMDVKMPRRD 72
Query: 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
G ++ + P+++++ V + GA YL+KP I +L
Sbjct: 73 GIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDL 121
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
V VVDDD +LE+ L T L L + D+++SD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAAL--ASKTPDVLLSDIRMPGMDGL 63
Query: 80 KLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
L +Q+ LPVI+M+ + GA +YL KP I E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 22/134 (16%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
V VVDDD L +LR +EV + A L+ R ++G ++ D+ MP M G
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHG--CLVLDMRMPGMSGI 64
Query: 80 KLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
+L EQ+ D +P++ ++ G ++ + GA +L PK
Sbjct: 65 ELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFL-------------------PK 105
Query: 139 PFEESDDSYSVNQG 152
PFEE ++ QG
Sbjct: 106 PFEEQALLDAIEQG 119
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
V VVDDD +LE+ L T L L + D+++SD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAAL--ASKTPDVLLSDIRMPGMDGL 63
Query: 80 KLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
L +Q+ LPVI+M+ + GA +YL KP I E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
V VVDDD +LE+ L T L L + D+++SD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAAL--ASKTPDVLLSDIRMPGMDGL 63
Query: 80 KLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
L +Q+ LPVI+M+ + GA +YL KP I E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDD+ I++ + K YEV AL+ + DI+I + +P++DG
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP--DIIILXLMLPEIDG 60
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++ + + +P++M+S D + G+ GA +Y+ KP +EL+
Sbjct: 61 LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQ 109
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ + +L+ L + Y+V + E AL K D+++ DV +P +DG
Sbjct: 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKP--DLIVLDVMLPKLDG 62
Query: 79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
++ +Q+ + + P++M++ D + G+ GA +Y+ KP +E+
Sbjct: 63 IEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREV 111
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 33 LEKMLRKCLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQV-GLEMD 90
LE+ LR +EV T + AE + ++N D ++ D++MP +DG + + ++ D
Sbjct: 23 LERGLRLSGFEVATAVDGAEA---LRSATENRPDAIVLDINMPVLDGVSVVTALRAMDND 79
Query: 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+PV ++S D + G+ GA +YL+KP + EL
Sbjct: 80 VPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAEL 115
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L++DDD + L L ++V + L + + D+VI D+ P +DG
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQP--DLVICDLRXPQIDGL 65
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
+L ++ + P+I++S G D ++ + GA +YL+KP+
Sbjct: 66 ELIRRIRQTASETPIIVLSGAGVXSDAVEALRLGAADYLIKPL 108
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVLVV+D+ ++ + L+K ++ V C E + M +D+VI D+ +P D
Sbjct: 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYM--ALNEPFDVVILDIMLPVHD 60
Query: 78 GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
G+++ + + ++ PV+M++ + +KG+ GA +YL KP ++EL
Sbjct: 61 GWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLREL 110
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L++DDD + L L ++V + L + + D+VI D+ P +DG
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQP--DLVICDLRXPQIDGL 65
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
+L ++ + P+I++S G D ++ + GA +YL+KP+
Sbjct: 66 ELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPL 108
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LV++DD +L L Y V + A L ++ ++ D+++ D+ +PD DG
Sbjct: 39 RILVIEDDHDIANVLRXDLTDAGYVVDHADSAXNGL--IKAREDHPDLILLDLGLPDFDG 96
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ +++ LP+I+++ ++ ++ + GA +YL+KP EL
Sbjct: 97 GDVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDEL 144
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
V VVDDD +LE+ L T L L + D+++S + MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAAL--ASKTPDVLLSXIRMPGMDGL 63
Query: 80 KLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
L +Q+ LPVI+M+ + GA +YL KP I E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
G RVL+VDD +L+ ++ K YEV + A++ + K DIV D+ MP+
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP--DIVTMDITMPE 58
Query: 76 MDGF-KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
M+G + E + ++ + +I+ S G V++ + GA ++++KP +
Sbjct: 59 MNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 106
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
G RVL+VDD +L+ ++ K YEV + A++ + K DIV D+ MP+
Sbjct: 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP--DIVTMDITMPE 59
Query: 76 MDGF-KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
M+G + E + ++ + +I+ S G V++ + GA ++++KP +
Sbjct: 60 MNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 107
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVLVV+D+ + L+ ++ ++V A+ A ++++ DI I D+ +PD DG
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA--DYYLNEHIPDIAIVDLGLPDEDG 59
Query: 79 FKLHEQ-VGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L + ++ LP+++++ QD ++ ++ GA +Y+ KP I+E+
Sbjct: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEV 108
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LV+DD+ L+ ++ +L EV + + L + + N D+VI+D+ MP + G
Sbjct: 5 KILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSG 64
Query: 79 FK-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137
L E + + VI+++ G + + + GA YL KP+ ++L + +
Sbjct: 65 MDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124
Query: 138 KPFEESD 144
K E++
Sbjct: 125 KLLMENE 131
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 20 VLVVDDDPIWLRILEKMLRK---CLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
VL+V+D+ R L L ++E R +L + D++I D+ +PD
Sbjct: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRG-----LLEAATRKPDLIILDLGLPDG 58
Query: 77 DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
DG + + +PVI++S D + + GA +YL KP I EL+
Sbjct: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQ 109
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 20/140 (14%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRK-CLYEVTKCNRAEIALDML-----------RM 59
D+F G RVLVVDD+ I ++ L+K + EV +C+ + AL ++ +
Sbjct: 56 DEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSV 115
Query: 60 SKNGYDIVISDVHMPDMDGFKLHEQV-----GLEMDLPVIMMSV-DGCTQDVMKGVTHGA 113
K +D + D MP+MDG++ ++ + P+I +S D +++ + + G
Sbjct: 116 DKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGM 175
Query: 114 CNYLLKPIRIKELRNIWQHV 133
+L K + +L N+ + +
Sbjct: 176 DAFLDKS--LNQLANVIREI 193
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY--DIVISDVHMP 74
G ++L+V+D+ ++ +L+ AL++L G+ D++I D+ MP
Sbjct: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL----GGFTPDLMICDIAMP 62
Query: 75 DMDGFKLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
M+G KL E + D PV+++S D+ K + G + LLKP++
Sbjct: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDD +L ++ K Y+ + ALD++ +K D+V+ D+ +P MDG
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDG 62
Query: 79 FKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
++ +++ ++ ++ VI+M+ G + + GA + KP I E+R+
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDD +L ++ K Y+ + ALD++ +K D+V+ D+ +P MDG
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDG 60
Query: 79 FKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
++ +++ ++ ++ VI+M+ G + + GA + KP I E+R+
Sbjct: 61 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 111
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+VL+V+D+ + +++ +L YE + AL + R +N D+++ D+ +P++ G
Sbjct: 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAR--ENKPDLILMDIQLPEISG 60
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKG----VTHGACN-YLLKPIRIKE-LRNIWQH 132
++ + + + DL I V T MKG + G C Y+ KPI + L I +
Sbjct: 61 LEVTKWLKEDDDLAHI--PVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRL 118
Query: 133 VAQQP 137
+ +QP
Sbjct: 119 LERQP 123
>pdb|3CU5|A Chain A, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
pdb|3CU5|B Chain B, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
Length = 141
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 30/140 (21%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD----------- 65
LR+L+VDD EK+ R L + N ++ D + + +G +
Sbjct: 2 SLRILIVDD--------EKLTRDGL--IANINWKALSFDQIDQADDGINAIQIALKHPPN 51
Query: 66 IVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIK 124
++++DV MP MDG +L + + L D VI MS + + + A Y+ KPI
Sbjct: 52 VLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPS 111
Query: 125 E--------LRNIWQHVAQQ 136
E ++ + QH AQQ
Sbjct: 112 EIMDALKQSIQTVLQHQAQQ 131
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDD +L ++ K Y+ + ALD++ +K D+V+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDG 62
Query: 79 FKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
++ +++ ++ ++ VI+M+ G + + GA + KP I E+R+
Sbjct: 63 IEIAKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVV+D+ ++ +L + ++ + + A++ L ++ D+++ D +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL--NEPWPDLILLDWMLPGGSG 61
Query: 79 FKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + + E D+PV+M++ G +D ++G+ GA +Y+ KP KEL
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKEL 112
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVV+D+ ++ +L + ++ + + A++ L ++ D+++ D +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL--NEPWPDLILLDWMLPGGSG 61
Query: 79 FKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + + E D+PV+M++ G +D ++G+ GA +Y+ KP KEL
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKEL 112
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDD +L ++ K Y+ + ALD++ +K D+V+ D+ +P MDG
Sbjct: 7 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDG 64
Query: 79 FKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
++ +++ ++ ++ VI+M+ G + + GA + KP I E+R+
Sbjct: 65 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 115
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVLVV+D+ ++ + L+K + V C E +D+VI D+ +P D
Sbjct: 3 VRVLVVEDERDLADLITEALKKEXFTVDVCYDGEEG--XYXALNEPFDVVILDIXLPVHD 60
Query: 78 GFK-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
G++ L ++ PV+ ++ + +KG+ GA +YL KP ++EL
Sbjct: 61 GWEILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLREL 110
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 65 DIVISDVHMPDMDGFKLHEQV--GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
DI++ D+ MP +DG + E++ G E VIM++ G K V GA ++LKP
Sbjct: 50 DILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPF- 108
Query: 123 IKELRNIWQHVAQ 135
++ N+ H+ Q
Sbjct: 109 --DMENLAHHIRQ 119
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDD +L ++ K Y+ + ALD++ +K D+V+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDG 62
Query: 79 FKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
++ +++ ++ ++ VI+M+ G + + GA + KP I E+R+
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
V +VDD+ + L ML + V AE L +NG ++++D+ MPDM G
Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNG--VLVTDLRMPDMSGV 63
Query: 80 KLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
+L +G L++++P I+++ G ++ + GA +++ KP
Sbjct: 64 ELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFE 107
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDD +L ++ K Y+ + ALD++ +K D+V+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDG 62
Query: 79 FKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
++ +++ ++ ++ VI+M+ G + GA + KP I E+R+
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEIRD 113
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L VL+ +D+ I + K L KC ++T AL + + +D++I D+ MP MD
Sbjct: 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMD 68
Query: 78 GFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGAC--NYLLKPIRIKELRNI 129
G + ++ E S+ T D + GA Y+ KP+ +LR++
Sbjct: 69 GLEAVSEIRNYERTHNTKRASIIAITADTIDDDRPGAELDEYVSKPLNPNQLRDV 123
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDD +L ++ K Y+ + ALD++ +K D+V+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDG 62
Query: 79 FKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
++ +++ ++ ++ VI+M+ G + + GA KP I E+R+
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEIRD 113
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ VLV++DD ++ +LE+ L +V R + A +L S+ +++V+ + +PD++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLL--SEKHFNVVLLXLLLPDVN 58
Query: 78 GFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
G ++ + + + VI+++ G + ++ + GA ++L KP ++E+
Sbjct: 59 GLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEI 108
>pdb|3I42|A Chain A, Structure Of Response Regulator Receiver Domain
(Chey-Like) From Methylobacillus Flagellatus
Length = 127
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+ L+V+D +++L ++ AL MS GYD V D+++PD G
Sbjct: 5 QALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALH--AMSTRGYDAVFIDLNLPDTSG 62
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQ-DVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
L +Q+ L M+ ++V G + D+ K YL KPI I L I Q +
Sbjct: 63 LALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSI 119
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 31/143 (21%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+V+D+ I + + + M+++ + + N A+ + S YD+V+ DV MP +DG
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAINSS--SYDLVLMDVCMPVLDG 67
Query: 79 FKL---------------------------HEQVGLE--MDLPVIMMSVDGCTQDVMKGV 109
K +EQV + LP+I M+ + + +
Sbjct: 68 LKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAESSEECY 127
Query: 110 THGACNYLLKPIRIKELRNIWQH 132
+G +++ KP+ +++LR Q
Sbjct: 128 ANGMDSFISKPVTLQKLRECLQQ 150
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+VDD +L ++ K Y+ + ALD++ +K D+V+ + +P MDG
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLXMKIPGMDG 62
Query: 79 FKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
++ +++ ++ ++ VI+M+ G + + GA + KP I E+R+
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3HV2|A Chain A, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
pdb|3HV2|B Chain B, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
Length = 153
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 1 MSPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS 60
MS +VA + P +L+VD + L+ L+++L Y + A AL +L +
Sbjct: 1 MSLGELNVATVTRRP---EILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLL--A 55
Query: 61 KNGYDIVISDVHMPDMDG----FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGAC-N 115
D+VIS H+P MDG ++H+Q I+++ D + + K + G
Sbjct: 56 SREVDLVISAAHLPQMDGPTLLARIHQQYP---STTRILLTGDPDLKLIAKAINEGEIYR 112
Query: 116 YLLKP 120
YL KP
Sbjct: 113 YLSKP 117
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKC--LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
+RVL VDD + +I+ +++ + V +A D+++ K D++ DV MP
Sbjct: 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK--KFNPDVLTLDVEMPR 61
Query: 76 MDGFKLHEQVGLEMDLPVIMM-SVDGCTQDV-MKGVTHGACNYLLKP 120
MDG E++ +PV+M+ S+ G +V ++ + GA +++ KP
Sbjct: 62 MDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKP 108
>pdb|3EQZ|A Chain A, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
pdb|3EQZ|B Chain B, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
Length = 135
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RV +VDDD + +L+ ++ V L +S N DI+I D+ MPDMDG
Sbjct: 5 RVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPR---AFLTLSLNKQDIIILDLMMPDMDG 61
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGA 113
++ + E P ++ + G GV H A
Sbjct: 62 IEVIRHLA-EHKSPASLILISGYD----SGVLHSA 91
>pdb|3RQI|A Chain A, Crystal Structure Of A Response Regulator Protein From
Burkholderia Pseudomallei With A Phosphorylated Aspartic
Acid, Calcium Ion And Citrate
Length = 184
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 21 LVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFK 80
LV+DD+ ++ L + L + Y V + + + AL + K ++ + +H+ + G
Sbjct: 11 LVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLS 68
Query: 81 LHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKP 139
L + L+ D +++++ ++ V GA NYL KP ++ + Q A + +
Sbjct: 69 LIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQA 128
Query: 140 FE 141
E
Sbjct: 129 EE 130
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 65 DIVISDVHMPDMDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
D+++ + +P G + + + E D+PV+M++ G +D ++G+ GA +Y+ KP
Sbjct: 48 DLILLEWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 122 RIKEL 126
KEL
Sbjct: 108 SPKEL 112
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 65 DIVISDVHMPDMDGFKLHEQV--GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
DI++ + MP +DG + E++ G E VIM++ G K V GA ++LKP
Sbjct: 50 DILLLXIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPF- 108
Query: 123 IKELRNIWQHVAQ 135
++ N+ H+ Q
Sbjct: 109 --DMENLAHHIRQ 119
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
V +VDD+ + L ML + V AE L +NG ++++ + MPDM G
Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNG--VLVTXLRMPDMSGV 63
Query: 80 KLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122
+L +G L++++P I+++ G ++ + GA +++ KP
Sbjct: 64 ELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFE 107
>pdb|3DO5|A Chain A, Crystal Structure Of Putative Homoserine Dehydrogenase
(Np_069768.1) From Archaeoglobus Fulgidus At 2.20 A
Resolution
Length = 327
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 73 MPDMDGFKLHEQVGLEMDLPVIMMS---VDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129
+ + +G +L + + PV+ ++ + C + +KG+ +G CNY+L R +E R
Sbjct: 129 LAERNGVRLXYEATVGGAXPVVKLAKRYLALCEIESVKGIFNGTCNYILS--RXEEERLP 186
Query: 130 WQHVAQQPKP--FEESDDSYSVN 150
++H+ ++ + + E+D SY V
Sbjct: 187 YEHILKEAQELGYAEADPSYDVE 209
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+++V+D+P+ L+ + Y V+ ++ D+++ D+++PD +G
Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREI--XQNQSVDLILLDINLPDENGL 62
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L + + +I+++ D + G+ GA +Y+ KP+ ++EL
Sbjct: 63 XLTRALRERSTVGIILVTGRSDRIDRIVGLEXGADDYVTKPLELREL 109
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75
GL+VLV+D++ + + + +L EVT + E + LR+ + + +V DV MP
Sbjct: 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNE---ECLRVVSHEHKVVFMDVCMPG 62
Query: 76 MDGF----KLHEQVGLEMDLPVIMMSVDGCTQDVMKG--VTHGACNYLLKPIRIKELRNI 129
++ + ++HE+ + +++++ G T K ++ G LLKP+ + +R++
Sbjct: 63 VENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDV 122
Query: 130 W 130
Sbjct: 123 L 123
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVLVVDD+ L +L + Y A ++ + + +++ DV MPD DG
Sbjct: 3 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEK--KIKELFFPVIVLDVWMPDGDG 60
Query: 79 FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136
+ + D VI+++ G +K + GA +L KP ++ +H ++
Sbjct: 61 VNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEE 119
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIAL---DMLRMSKNGYDIVISDVHMPD 75
++ VVDDD + +L+K ++ + R + L D L + + +V+ DV +PD
Sbjct: 4 KIAVVDDD-------KNILKKVSEKLQQLGRVKTFLTGEDFLN-DEEAFHVVVLDVXLPD 55
Query: 76 MDGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
G+++ + + VI++++ + V+KG GA +Y+ KP
Sbjct: 56 YSGYEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPF 102
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIAL---DMLRMSKNGYDIVISDVHMPD 75
++ VVDDD + +L+K ++ + R + L D L + + +V+ DV +PD
Sbjct: 4 KIAVVDDD-------KNILKKVSEKLQQLGRVKTFLTGEDFLN-DEEAFHVVVLDVXLPD 55
Query: 76 MDGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
G+++ + + VI++++ + V+KG GA +Y+ KP
Sbjct: 56 YSGYEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPF 102
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L++D D + L+ L + + E A+ ++ N YD++ ++ + D DG
Sbjct: 6 KILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIG--KIFSNKYDLIFLEIILSDGDG 63
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
+ L +++ P++ + Q ++ + G +YL+KP+ ++ L + K
Sbjct: 64 WTLCKKIRNVTTCPIVYXTYINEDQSILNALNSGGDDYLIKPLNLEILY-------AKVK 116
Query: 139 PFEESDDSYSVNQG 152
+SY N+G
Sbjct: 117 AILRRXNSYVNNEG 130
>pdb|2RJN|A Chain A, Crystal Structure Of An Uncharacterized Protein Q2bku2
From Neptuniibacter Caesariensis
Length = 154
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
V++VDD+ L L++++++ + AL+ L+ + +VISD+ MP+M G
Sbjct: 10 VMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGT--SVQLVISDMRMPEMGGE 67
Query: 80 KLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACN-YLLKP 120
EQV D+ +++S Q + V G + +LLKP
Sbjct: 68 VFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKP 110
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD+P +L++ L++ YE+ E AL + YD+VI D+ MP + G
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALK--KFFSGNYDLVILDIEMPGISG 60
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++ ++ + D +I+++ + + + A Y++K EL+
Sbjct: 61 LEVAGEIRKKKKDAKIILLTAYSHYRSDLS--SWAADEYVVKSFNFDELK 108
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+V+D+ + L+ + Y+V + +L S+ ++VI D+++P +G
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQIL--SEYDINLVIXDINLPGKNGL 63
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVAQ 135
L ++ + ++ + ++ D + G+ GA +Y+ KP +EL RN+ Q
Sbjct: 64 LLARELREQANVALXFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTXQ 123
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 11 SDQFPAGLRVLVVDDDPIW----LRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDI 66
S+ P +RV+V DD P++ +R L L + V + + AL++++ D+
Sbjct: 9 SNPQPEKVRVVVGDDHPLFREGVVRALS--LSGSVNVVGEADDGAAALELIKAHLP--DV 64
Query: 67 VISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119
+ D MP MDG ++ V E+ V+++S V + + GA +LLK
Sbjct: 65 ALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLK 118
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY---DIVISDVHMP 74
VL+VDD ++ L ++ + + + A + + KN Y DIV + MP
Sbjct: 37 FNVLIVDDSVFTVKQLTQIFTSEGFNI--IDTAADGEEAVIKYKNHYPNIDIVTLXITMP 94
Query: 75 DMDGFK-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI-RIKELRNIW 130
MDG L + + + VIM+S G Q V + GA +++KP+ R K L+ +
Sbjct: 95 KMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVM 152
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 54/94 (57%), Gaps = 8/94 (8%)
Query: 19 RVLVVDDDPIWLRILEKML-RKCLY-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
RVLVV+D+P + ++ ++L RK ++ ++ + AL ++ +K YD++I D+ +P
Sbjct: 7 RVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAK--YDLIILDIGLPIA 64
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMK 107
+GF++ V G P+++++ D + D K
Sbjct: 65 NGFEVXSAVRKPGANQHTPIVILT-DNVSDDRAK 97
>pdb|3CRN|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
pdb|3CRN|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
Length = 132
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+VDDD L +++L YEV A + ++ +++ + + +PD +G
Sbjct: 5 RILIVDDDTAILDSTKQILEFEGYEVEIAATA--GEGLAKIENEFFNLALFXIKLPDXEG 62
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE-LRNIWQHVAQQ 136
+L E+ L I ++ ++ + + GA Y+ KP+ ++ L I + + +Q
Sbjct: 63 TELLEKAHKLRPGXKKIXVTGYASLENSVFSLNAGADAYIXKPVNPRDLLEKIKEKLDEQ 122
Query: 137 PK 138
K
Sbjct: 123 EK 124
>pdb|2LPM|A Chain A, Chemical Shift And Structure Assignments For Sma0114
Length = 123
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTK-CNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
LRVLVV+D+ + ++E L + +EV +R + ALD+ R K +DI I DV++
Sbjct: 9 LRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIAR--KGQFDIAIIDVNLDGE 66
Query: 77 DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACN--YLLKPIRIKELRNIWQHVA 134
+ + + + E ++P I + G KG+ N L KP EL + ++
Sbjct: 67 PSYPVADILA-ERNVPFIFATGYGS-----KGLDTRYSNIPLLTKPFLDSELEAVLVQIS 120
Query: 135 QQ 136
++
Sbjct: 121 KE 122
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 20 VLVVDDDPIWLRILEKMLRK--CLYEVTKCNRAEIALDMLRMSKNGYD--------IVIS 69
+LVV+D +++L++ + + +C + ALD L + + + +++
Sbjct: 9 LLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILL 68
Query: 70 DVHMPDMDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
D+++P DG ++ +++ + +PV++M+ +D+ ++ +Y++KP+ I L
Sbjct: 69 DLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRL 128
Query: 127 RNIWQ 131
Q
Sbjct: 129 TETVQ 133
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+V+D+ + L+ + Y+V + +L S+ ++VI D+++P +G
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL--SEYDINLVIMDINLPGKNGL 63
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL----RNIWQHVAQ 135
L ++ + ++ ++ ++ D + G+ GA +Y+ KP +EL RN+ Q
Sbjct: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMQ 123
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVV+D+ ++ +L + ++ + + A++ L ++ D+++ +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL--NEPWPDLILLAWMLPGGSG 61
Query: 79 FKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + + E D+PV+M++ G +D ++G+ GA + + KP KEL
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKEL 112
>pdb|3GRC|A Chain A, Crystal Structure Of A Sensor Protein From Polaromonas
Sp. Js666
pdb|3GRC|B Chain B, Crystal Structure Of A Sensor Protein From Polaromonas
Sp. Js666
pdb|3GRC|C Chain C, Crystal Structure Of A Sensor Protein From Polaromonas
Sp. Js666
pdb|3GRC|D Chain D, Crystal Structure Of A Sensor Protein From Polaromonas
Sp. Js666
Length = 140
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+ +DDP R+L L K ++ + A AL+ ++++ Y D+++PD DG
Sbjct: 8 RILICEDDPDIARLLNLXLEKGGFDSDXVHSAAQALE--QVARRPYAAXTVDLNLPDQDG 65
Query: 79 FKL 81
L
Sbjct: 66 VSL 68
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTK--CNRAEIALDMLRMSKNG--YDIVISDVHM 73
+++LVV+D+ + ++++ML E + C+ E + ++ G Y+++ DV M
Sbjct: 2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQM 61
Query: 74 PDMDGFKLHEQVGLEMDL--PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
P +DG + + ++ P++ ++ ++ + + G +L KPI+ +L+ I
Sbjct: 62 PKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTIL 120
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVV+D+ ++ +L + ++ + + A++ L ++ D+++ +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL--NEPWPDLILLAWMLPGGSG 61
Query: 79 FKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + + E D+PV+M++ G +D ++G+ GA + + KP KEL
Sbjct: 62 IQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKEL 112
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTK--CNRAEIALDMLRMSKNG--YDIVISDVHM 73
+++LVV+D+ + ++++ML E + C+ E + ++ G Y+++ DV M
Sbjct: 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQM 62
Query: 74 PDMDGFKLHEQVGLEMDL--PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
P +DG + + ++ P++ ++ ++ + + G +L KPI+ +L+ I
Sbjct: 63 PKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTIL 121
>pdb|2GWR|A Chain A, Crystal Structure Of The Response Regulator Protein Mtra
From Mycobacterium Tuberculosis
Length = 238
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDDD L +LR ++ AL +R + D+V+ D+ +P +G
Sbjct: 7 RILVVDDDASLAEXLTIVLRGEGFDTAVIGDGTQALTAVR--ELRPDLVLLDLXLPGXNG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
+ + + +P++ ++ T DV+ G+ GA +Y+ KP + KE
Sbjct: 65 IDVCRVLRADSGVPIVXLTAKTDTVDVVLGLESGADDYIXKPFKPKE 111
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ VLVVDD LRK L +V + + A AL L +V+ D + P++D
Sbjct: 125 IEVLVVDDSRTSRHRTXAQLRKQLLQVHEASHAREALATLEQHP-AIRLVLVDYYXPEID 183
Query: 78 GFK----LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
G L E+ + L +I +SV + + GA ++L +P +EL+
Sbjct: 184 GISLVRXLRERYS-KQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQ 236
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDDD +E++L++ ++V + A +++S I+ D+ MP +DG
Sbjct: 8 RILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDA--GIKLSTFEPAIMTLDLSMPKLDG 65
Query: 79 FKLHEQVGLE--MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
+ + + P I++ + + VT GA +YL KP
Sbjct: 66 LDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPF 110
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Semet, L89m)
Length = 116
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+LVVDD+P +L++ L++ YE+ E AL + YD+VI D+ P + G
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALK--KFFSGNYDLVILDIEXPGISG 60
Query: 79 FKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
++ ++ + D +I+++ + + A Y++K EL+
Sbjct: 61 LEVAGEIRKKKKDAKIILLT--AYSHYRSDXSSWAADEYVVKSFNFDELK 108
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 33.1 bits (74), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDML-------RMSKNGYDIVISD 70
++ ++DD R++EK +R+ E+ AL+ L R+S +V+ D
Sbjct: 7 IVXIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLD 66
Query: 71 VHMPDMDG---FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
+++PD G KL ++ PV++++ +++ + GA Y+ KP+ +
Sbjct: 67 LNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFA 126
Query: 128 NIWQHVA 134
N + +
Sbjct: 127 NAIRQLG 133
>pdb|3HDG|A Chain A, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|B Chain B, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|D Chain D, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|E Chain E, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
Length = 137
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L++L+V+DD L ++ EV E + + + D++I+D+ P +
Sbjct: 8 LKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL--HAPDVIITDIRXPKLG 65
Query: 78 GFKLHEQVGLEMDLP-VIMMSVDGCTQDVMKGVTHGACNYLLKPI---RIKELRNIWQHV 133
G + +++ P VI++S + +K + G +L KPI R+ E ++H+
Sbjct: 66 GLEXLDRIKAGGAKPYVIVISAFSEXKYFIKAIELGVHLFLPKPIEPGRLXETLEDFRHI 125
>pdb|2QR3|A Chain A, Crystal Structure Of The N-Terminal Signal Receiver Domain
Of Two- Component System Response Regulator From
Bacteroides Fragilis
Length = 140
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI-----SDVHMP 74
+++VDD+ L ++ +L+ +V + + ++L + +N +++ S ++
Sbjct: 6 IIIVDDNKGVLTAVQLLLKNHFSKVITLS-SPVSLSTVLREENPEVVLLDMNFTSGINNG 64
Query: 75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
+ F LHE DLPV++ + ++G+ GA ++++KP ++L + A
Sbjct: 65 NEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAA 124
Query: 135 QQPK 138
Q K
Sbjct: 125 SQAK 128
>pdb|3CNB|A Chain A, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|B Chain B, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|C Chain C, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
Length = 143
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEI---ALDMLRMSKNGYDIVISDVHMP 74
+L+++DD + +L + L L+ K A A D+L K D+V+ D+ M
Sbjct: 9 FSILIIEDDKEFADMLTQFLEN-LFPYAKIKIAYNPFDAGDLLHTVKP--DVVMLDLMMV 65
Query: 75 DMDGFKL-HEQVGLEMDLPVIMMSVDGCTQD--VMKGVTHGACNYLLKPIRIKELRNIWQ 131
MDGF + H +I++++ G D V + V GA KP+ L +
Sbjct: 66 GMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIK 125
Query: 132 HVAQQPKPFEES 143
+ +Q K E
Sbjct: 126 QLVEQKKATSEG 137
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL|A Chain A, The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM
NARL
Length = 215
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
S+Q PA +L++DD P+ LR K L ++T A + ++++ +I
Sbjct: 1 SNQEPA--TILLIDDHPM-LRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILL 57
Query: 71 V-HMPDMDGF----KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE 125
+MP M+G KL E+ + +++ SV +DV+ + GA YLLK + ++
Sbjct: 58 DLNMPGMNGLETLDKLREK---SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPED 114
Query: 126 LRNIWQHVA 134
L A
Sbjct: 115 LLKALHQAA 123
>pdb|2QXY|A Chain A, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
pdb|2QXY|B Chain B, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
Length = 142
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
V VVD+ I ++ L K + V + A LR K D+V DV + +
Sbjct: 7 VXVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREK--IDLVFVDVFEGE-ESL 63
Query: 80 KLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L ++ E D V ++S ++ V GA +Y+LKP R+ L
Sbjct: 64 NLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYL 111
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ VLV++DD ++ +LE+ L +V R + A +L S+ +++V+ D+ +PD++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLL--SEKHFNVVLLDLLLPDVN 58
Query: 78 GFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
G ++ + + + VI+++ G + ++ + GA ++L KP ++E+
Sbjct: 59 GLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEI 108
>pdb|1E19|A Chain A, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate
Synthetase From The Hyperthermophilic Archaeon
Pyrococcus Furiosus Bound To Adp
pdb|1E19|B Chain B, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate
Synthetase From The Hyperthermophilic Archaeon
Pyrococcus Furiosus Bound To Adp
Length = 314
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 33 LEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLP 92
L++ +K YE N + A + + GY++VI+ + P + LH MD
Sbjct: 14 LQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLH------MDAG 67
Query: 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
+ DV ++ G Y+++ ELR
Sbjct: 68 QATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRK 103
>pdb|3N0R|A Chain A, Structure Of The Phyr Stress Response Regulator At 1.25
Angstrom Resolution
Length = 286
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVT--KCNRAEIALDMLRMSKNGYDIVISDVHMPD-M 76
VL+++D+P+ +E ++R+ ++VT R E AL+ + G +V++D+ + D
Sbjct: 163 VLIIEDEPVIAADIEALVRELGHDVTDIAATRGE-ALEAVTRRTPG--LVLADIQLADGS 219
Query: 77 DGFKLHEQVGLEMDLPVIMMSV 98
G + + D+PVI ++
Sbjct: 220 SGIDAVKDILGRXDVPVIFITA 241
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYE---VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
V++VDD + +R+ K L + V + + ALD L N D+++ D+ MP M
Sbjct: 16 VMIVDDAAM-MRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPN-VDLILLDIEMPVM 73
Query: 77 DGFKLHEQVGLEMDLPVIMMS 97
DG + L+ + M+S
Sbjct: 74 DGMEFLRHAKLKTRAKICMLS 94
>pdb|4FFB|C Chain C, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 278
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
H+P + G M+L V + V G D+++ + LKPI++K+L ++
Sbjct: 187 HVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKK----LKPIQVKDLHKLFA 242
Query: 132 HVAQQP 137
V +P
Sbjct: 243 KVGDEP 248
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMS-KNGYDIVISDVHMPDM 76
+RVLVVDD ++R++ K + ++ A+ L+ + + + D++ D+ MP++
Sbjct: 26 IRVLVVDDSA-FMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITMDIEMPNL 84
Query: 77 DGFKLHEQVGLEMDLPVIMMS--VDGCTQDVMKGVTHGACNYLLKP 120
+G + + + + VIM+S + ++ + +GA +++ KP
Sbjct: 85 NGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGAVDFITKP 130
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 32 ILEKMLRKCLYEVTKCNRAEIALDML 57
I++K+L+KC Y+V K R + +D +
Sbjct: 100 IIQKLLQKCDYDVQKAQRGIVYIDQI 125
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 32 ILEKMLRKCLYEVTKCNRAEIALDML 57
I++K+L+KC Y+V K R + +D +
Sbjct: 100 IIQKLLQKCDYDVQKAQRGIVYIDQI 125
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 65 DIVISDVHMPDMDGF-KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118
DIV D+ MP+M+G + E + ++ + +I+ S G V++ + GA +++
Sbjct: 27 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKGFIV 81
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 65 DIVISDVHMPDMDGF-KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118
DIV D+ MP+M+G + E + ++ + +I+ S G V++ + GA ++++
Sbjct: 27 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIV 81
>pdb|3KYI|B Chain B, Crystal Structure Of The Phosphorylated P1 Domain Of
Chea3 In Complex With Chey6 From R. Sphaeroides
Length = 145
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 20 VLVVDDDPIWLRILEKMLRKC--LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
V++VDD + + ++ V + + ALD L N D+++ ++ MP MD
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPN-VDLILLNIEMPVMD 74
Query: 78 GFKLHEQVGLEMDLPVIMMS 97
G + L+ + M++
Sbjct: 75 GMEFLRHAKLKTRAKICMLA 94
>pdb|3FDG|A Chain A, The Crystal Structure Of The Dipeptidase Ac, Metallo
Peptidase. Merops Family M19
pdb|3FDG|B Chain B, The Crystal Structure Of The Dipeptidase Ac, Metallo
Peptidase. Merops Family M19
Length = 355
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 44 VTKCNRAEIALDMLRMSKNGYDIV 67
V +CNR +I LD+ +++ G+D V
Sbjct: 196 VAECNRLKIMLDLSHLNEKGFDDV 219
>pdb|3LY0|A Chain A, Crystal Structure Of Metallo Peptidase From Rhodobacter
Sphaeroides Liganded With Phosphinate Mimic Of Dipeptide
L- Ala-D-Ala
pdb|3LY0|B Chain B, Crystal Structure Of Metallo Peptidase From Rhodobacter
Sphaeroides Liganded With Phosphinate Mimic Of Dipeptide
L- Ala-D-Ala
Length = 364
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 44 VTKCNRAEIALDMLRMSKNGYDIV 67
V +CNR +I LD+ +++ G+D V
Sbjct: 198 VAECNRLKIMLDLSHLNEKGFDDV 221
>pdb|2QSJ|A Chain A, Crystal Structure Of A Luxr Family Dna-Binding Response
Regulator From Silicibacter Pomeroyi
pdb|2QSJ|B Chain B, Crystal Structure Of A Luxr Family Dna-Binding Response
Regulator From Silicibacter Pomeroyi
Length = 154
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRM--SKNGYDIVISDVHMPD 75
L V+++ DD +R K L + + + AE D L + N D+++ DV++PD
Sbjct: 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPD 62
Query: 76 MDGF 79
+
Sbjct: 63 AEAI 66
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 34 EKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD-----------IVISDVHMPDMDGFK-L 81
+ MLR+ + ++ K + ++L + NG D +VI D+ MP M G + L
Sbjct: 12 QNMLRQAMVQLIKLHGD---FEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVL 68
Query: 82 HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
E +++ VI+++ K V + Y+LK I+EL
Sbjct: 69 AEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEEL 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,028,307
Number of Sequences: 62578
Number of extensions: 187996
Number of successful extensions: 700
Number of sequences better than 100.0: 163
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 164
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)