BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029986
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana
GN=ARR2 PE=1 SV=1
Length = 664
Score = 220 bits (560), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 114/209 (54%), Positives = 142/209 (67%), Gaps = 28/209 (13%)
Query: 2 SPASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK 61
S ++ + SD FPA LRVLVVDDDP L ILE+ML CLY VTKCNRAE AL +LR +K
Sbjct: 12 SGTAAGGSNSDPFPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNK 71
Query: 62 NGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
NG+DIVISDVHMPDMDGFKL E VGLEMDLPVIMMS D V+KGVTHGA +YL+KP+
Sbjct: 72 NGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPV 131
Query: 122 RIKELRNIWQHVA--------------------------QQPKPFEESDDSYSVNQGNWR 155
RI+ L+NIWQHV QQ + ++S SVN+GN R
Sbjct: 132 RIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNGR 191
Query: 156 TSNRRKDEE--EEAEKRDDTSTLKKPRFL 182
+S +RK+EE ++ + ++D+S+LKKPR +
Sbjct: 192 SSRKRKEEEVDDQGDDKEDSSSLKKPRVV 220
>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana
GN=ARR1 PE=1 SV=2
Length = 690
Score = 218 bits (555), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 145/216 (67%), Gaps = 40/216 (18%)
Query: 9 AVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVI 68
V + FP+GLRVLVVDDDP L ILE+MLR CLYEVTKCNRAE+AL +LR +K+G+DIVI
Sbjct: 28 TVVEMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVI 87
Query: 69 SDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
SDVHMPDMDGFKL E VGLEMDLPVIMMS D V+KGVTHGA +YL+KP+R++ L+N
Sbjct: 88 SDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKN 147
Query: 129 IWQHVAQQPK----------PFEES-------------------------DDSYSVNQG- 152
IWQHV ++ + EE+ D+S SVN+G
Sbjct: 148 IWQHVVRKRRSEWSVPEHSGSIEETGERQQQQHRGGGGGAAVSGGEDAVDDNSSSVNEGN 207
Query: 153 NWRTSNR-RKDEEEEAE---KRDDTSTLKKPRFLVS 184
NWR+S+R RKDEE E + K +D S LKKPR + S
Sbjct: 208 NWRSSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWS 243
>sp|Q9FXD6|ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana
GN=ARR11 PE=1 SV=1
Length = 521
Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/122 (75%), Positives = 103/122 (84%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
P GLRVLVVDDDP WL+ILEKML+KC YEVT C A AL +LR K+GYDIVISDV+MP
Sbjct: 8 PVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMP 67
Query: 75 DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
DMDGFKL E VGLE+DLPVIMMSVDG T VMKGV HGAC+YLLKPIR+KEL+ IWQHV
Sbjct: 68 DMDGFKLLEHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVL 127
Query: 135 QQ 136
++
Sbjct: 128 RK 129
>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana
GN=ARR10 PE=1 SV=1
Length = 552
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/182 (52%), Positives = 126/182 (69%), Gaps = 8/182 (4%)
Query: 8 VAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIV 67
+ V DQFP G+RVL VDDD LRIL+ +L++C Y VT N+A+ AL++LR +KN +D+V
Sbjct: 7 IEVLDQFPVGMRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLV 66
Query: 68 ISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELR 127
ISDV MPDMDGFKL E VGLEMDLPVIM+S + VMKGV HGAC+YLLKP+RI+EL+
Sbjct: 67 ISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELK 126
Query: 128 NIWQHVAQQPKPFEESDDSYSVNQGNWRTSNRRKDEE-------EEAEKRDDTSTLKKPR 180
NIWQHV ++ +++ + S GN +NR++ E+ E DD + KKPR
Sbjct: 127 NIWQHVVRK-SKLKKNKSNVSNGSGNCDKANRKRKEQYEEEEEEERGNDNDDPTAQKKPR 185
Query: 181 FL 182
L
Sbjct: 186 VL 187
>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana
GN=ARR12 PE=2 SV=2
Length = 596
Score = 179 bits (455), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 113/169 (66%), Gaps = 9/169 (5%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
DQFP G+RVL VDDD L+ILE +LR C Y VT N+A+ AL++LR +KN +D+VISDV
Sbjct: 11 DQFPVGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDV 70
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
MPDMDGFKL E VGLEMDLPVIM+S + VMKGVTHGAC+YLLKP+RI+EL+NIWQ
Sbjct: 71 DMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQ 130
Query: 132 HVAQQPKPFEESDDSYSVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKPR 180
HV + + N+G+ ++R E D + K R
Sbjct: 131 HVVR---------SRFDKNRGSNNNGDKRDGSGNEGVGNSDQNNGKGNR 170
>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana
GN=ARR14 PE=1 SV=2
Length = 382
Score = 174 bits (441), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/128 (62%), Positives = 106/128 (82%), Gaps = 1/128 (0%)
Query: 10 VSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69
++DQFP+GLR+LVVDDD L ILEKML + +Y+VT C++A++AL +LR K+ +D+V+S
Sbjct: 3 INDQFPSGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLS 62
Query: 70 DVHMPDMDGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRN 128
DVHMP M+G+ L +QVG LEMDLPVIMMSVDG T VM G+ HGAC+YL+KPIR +EL+N
Sbjct: 63 DVHMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKN 122
Query: 129 IWQHVAQQ 136
IWQHV ++
Sbjct: 123 IWQHVVRR 130
>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana
GN=ARR18 PE=2 SV=2
Length = 635
Score = 142 bits (359), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 73/125 (58%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
Query: 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71
D+FP G+RVL VDD+P LR LE++L +C Y VTK + AL+MLR + N +D+VISDV
Sbjct: 12 DKFPVGMRVLAVDDNPTCLRKLEELLLRCKYHVTKTMESRKALEMLRENSNMFDLVISDV 71
Query: 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
MPD DGFKL E +GLEMDLPVIM+S VMKG+ HGAC+YL+KP+ +KEL+NIW
Sbjct: 72 EMPDTDGFKLLE-IGLEMDLPVIMLSAHSDYDSVMKGIIHGACDYLVKPVGLKELQNIWH 130
Query: 132 HVAQQ 136
HV ++
Sbjct: 131 HVVKK 135
>sp|Q9FJ16|APRR4_ARATH Putative two-component response regulator-like APRR4 OS=Arabidopsis
thaliana GN=APRR4 PE=3 SV=1
Length = 292
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 84/126 (66%)
Query: 11 SDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70
S FP GLRVLV D+DP +L ILE+ L+K Y+VT CN A+ LR +N +D+ +
Sbjct: 35 SSNFPEGLRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQ 94
Query: 71 VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130
V+ + D F+ ++G EMDLP+I++S D + V K + +GA +YL+KPIR ++LR ++
Sbjct: 95 VNNAEGDIFRFLSEIGSEMDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVF 154
Query: 131 QHVAQQ 136
+H+ ++
Sbjct: 155 KHLVKK 160
>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp.
japonica GN=EHD1 PE=1 SV=1
Length = 341
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 78/123 (63%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
+P GLRVLV+DDD +L ++E +L KC Y+VT A+ + + D+VISD
Sbjct: 7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
P DG + ++V + +P ++M+ G T VMK V +GA ++LLKP+RI+EL NIWQH+
Sbjct: 67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 134 AQQ 136
++
Sbjct: 127 FRK 129
>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica
PE=2 SV=1
Length = 341
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 78/123 (63%)
Query: 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73
+P GLRVLV+DDD +L ++E +L KC Y+VT A+ + + D+VISD
Sbjct: 7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66
Query: 74 PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
P DG + ++V + +P ++M+ G T VMK V +GA ++LLKP+RI+EL NIWQH+
Sbjct: 67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 134 AQQ 136
++
Sbjct: 127 FRK 129
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 83/133 (62%)
Query: 4 ASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNG 63
S ++ QFP VLVVD + L +++++++ Y+V+ AE AL L K+
Sbjct: 20 TSEITSLLSQFPGNTNVLVVDTNFTTLLNMKQIMKQYAYQVSIETDAEKALAFLTSCKHE 79
Query: 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
+IVI D HMP +DG + + + ++DLPV++MS D T+ VMK +GAC+Y++KP++
Sbjct: 80 INIVIWDFHMPGIDGLQALKSITSKLDLPVVIMSDDNQTESVMKATFYGACDYVVKPVKE 139
Query: 124 KELRNIWQHVAQQ 136
+ + NIWQH+ ++
Sbjct: 140 EVMANIWQHIVRK 152
>sp|A2YQ93|PRR37_ORYSI Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
indica GN=PRR37 PE=2 SV=2
Length = 742
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
++VL+VD D +++ +LR C+YEV + A L +N D+V+++V MP +
Sbjct: 62 IKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVS 121
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + ++PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 122 GISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 180
>sp|Q0D3B6|PRR37_ORYSJ Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
japonica GN=PRR37 PE=2 SV=1
Length = 742
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
++VL+VD D +++ +LR C+YEV + A L +N D+V+++V MP +
Sbjct: 62 IKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVS 121
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ + ++PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 122 GISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 180
>sp|Q8L500|APRR9_ARATH Two-component response regulator-like APRR9 OS=Arabidopsis thaliana
GN=APRR9 PE=2 SV=2
Length = 468
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 73/122 (59%), Gaps = 9/122 (7%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V+ D +I+ +LRKC Y+V + A ++L+ + D++++++ +P +
Sbjct: 37 LRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILTELDLPSIS 96
Query: 78 GFKL------HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
GF L HE ++PVIMMS + V+K + GA +YL+KP+R EL+N+WQ
Sbjct: 97 GFALLALVMEHEAC---KNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQ 153
Query: 132 HV 133
HV
Sbjct: 154 HV 155
>sp|A2XFB7|PRR73_ORYSI Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
indica GN=PRR73 PE=2 SV=2
Length = 767
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V++D +++ +LRKC YEV A L +N D+V+++V MP +
Sbjct: 81 LRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLS 140
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ D+PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 141 GIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 199
>sp|Q10N34|PRR73_ORYSJ Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
japonica GN=PRR73 PE=2 SV=1
Length = 767
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
LRVL+V++D +++ +LRKC YEV A L +N D+V+++V MP +
Sbjct: 81 LRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLS 140
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ D+PVIMMS + V K ++ GA ++L+KPIR EL+N+WQHV
Sbjct: 141 GIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 199
>sp|Q6LA42|APRR5_ARATH Two-component response regulator-like APRR5 OS=Arabidopsis thaliana
GN=APRR5 PE=1 SV=2
Length = 558
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 12/158 (7%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76
LRVL+V+ D +I+ +LRKC Y V A +ML+ D+++++V +P +
Sbjct: 49 ALRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEMLKGKPESVDLILTEVDLPSI 108
Query: 77 DGFKLHEQVGLEMDL----PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
G+ L + +E D+ PVIMMS V K + GA +YL+KP+R ELRN+WQH
Sbjct: 109 SGYALLTLI-MEHDICKNIPVIMMSTQDSVNTVYKCMLKGAADYLVKPLRRNELRNLWQH 167
Query: 133 V-------AQQPKPFEESDDSYSVNQGNWRTSNRRKDE 163
V A P+ ES + SN ++D+
Sbjct: 168 VWRRQTSLAPDSFPWNESVGQQKAEGASANNSNGKRDD 205
>sp|Q9LZJ8|ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis
thaliana GN=ARR20 PE=2 SV=1
Length = 426
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 16/175 (9%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
RVL+V D L+ ++ + Y+VTK E A+ L +K+ D+VI D HMPD++G
Sbjct: 42 RVLLVGADSN--SSLKNLMTQYSYQVTKYESGEEAMAFLMKNKHEIDLVIWDFHMPDING 99
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ-- 136
+G +MDLPV++MS + + VM+ + +GAC++L+KP+ + + +W+HV ++
Sbjct: 100 LDALNIIGKQMDLPVVIMSHEYKKETVMESIKYGACDFLVKPVSKEVIAVLWRHVYRKRM 159
Query: 137 -----PKPFE----ESD-DSY-SVNQGNWRTSNRRKDEEEEAEKRDDTSTLKKPR 180
KP E ESD D Y + Q N SN + + + +++ S KKPR
Sbjct: 160 SKSGLDKPGESGTVESDPDEYDDLEQDNLYESN-EEGSKNTCDHKEEKSPTKKPR 213
>sp|Q689G6|PRR95_ORYSJ Two-component response regulator-like PRR95 OS=Oryza sativa subsp.
japonica GN=PRR95 PE=2 SV=1
Length = 623
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+ + D I+ +LRKC Y V + A D+L+ D+V+++V +P M
Sbjct: 43 VRVLLAEGDDSTRHIICALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEVELPLMS 102
Query: 78 GFKLHEQVGLEMD----LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
GF L + +E D +PVIMMS + V K + GA ++L+KPIR ELRN+WQHV
Sbjct: 103 GFLLLSTI-MEHDACKNIPVIMMSSNDSVSMVFKCMLKGAADFLVKPIRKNELRNLWQHV 161
>sp|Q9LVG4|APRR3_ARATH Two-component response regulator-like APRR3 OS=Arabidopsis thaliana
GN=APRR3 PE=1 SV=1
Length = 495
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
L+VL+V++D I+ +L+ C YEVT A +L K+ D+V+++V MP
Sbjct: 64 LKVLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWRILEDEKSCIDLVLTEVDMPVHS 123
Query: 78 GFKLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS V K +++GA ++L+KPIR EL+N+WQHV
Sbjct: 124 GTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLVKPIRKNELKNLWQHV 182
>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana
GN=APRR7 PE=2 SV=1
Length = 727
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+RVL+V++D I+ +LR C YEV + + A +L N DIV+++V MP +
Sbjct: 78 IRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLS 137
Query: 78 GFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G L ++ ++PVIMMS V K ++ GA ++L+KPIR EL+ +WQHV
Sbjct: 138 GIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHV 196
>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis
thaliana GN=ARR21 PE=2 SV=3
Length = 613
Score = 74.7 bits (182), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 71/115 (61%), Gaps = 3/115 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+ V+VVDDD ++L I+ +ML+ Y V + + AL L++ ++ D++I+D +MP M+
Sbjct: 16 INVMVVDDDHVFLDIMSRMLQHSKYRVIAVDDPKKALSTLKIQRDNIDLIITDYYMPGMN 75
Query: 78 GFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
G +L +Q+ E +LPV++MS D T + ++ GA ++ KPI +L I+Q
Sbjct: 76 GLQLKKQITQEFGNLPVLVMSSD--TNKEEESLSCGAMGFIPKPIHPTDLTKIYQ 128
>sp|Q23917|PDE2_DICDI 3',5'-cyclic-nucleotide phosphodiesterase regA OS=Dictyostelium
discoideum GN=regA PE=1 SV=1
Length = 793
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 20/147 (13%)
Query: 2 SPASSSVA-VSDQF-PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRM 59
SP+S V+ SD++ P+ +R+LV DDD + +IL +L+K Y VT EIA + +
Sbjct: 142 SPSSHRVSDFSDEYSPSKVRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINK 201
Query: 60 SKNGYDIVISDVHMPDMDGFKLHEQVG---LEMDLPVIMMSVDGCTQDVMKG---VTHGA 113
+ YD+V++DV MP + GF L +++ + +PVI+MS G D + G
Sbjct: 202 GQQKYDLVLTDVMMPHITGFDLLQRINDHPVHRHIPVILMS--GTAVDYKYANDTIKIGG 259
Query: 114 CNYLLKPIRIKE---------LRNIWQ 131
++L KPI KE L++IWQ
Sbjct: 260 QDFLTKPI-AKELLKKKIDTVLQSIWQ 285
>sp|Q9LKL2|APRR1_ARATH Two-component response regulator-like APRR1 OS=Arabidopsis thaliana
GN=APRR1 PE=1 SV=1
Length = 618
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D+D L + +L +C Y+VT A +D L DI+++++ +P
Sbjct: 19 VRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIILAEIDLPMAK 78
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
G K+ + + DL PVIMMS V+K + GA +YL+KP+R EL N+W H+
Sbjct: 79 GMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNELLNLWTHM 137
>sp|Q689G9|PRR1_ORYSJ Two-component response regulator-like PRR1 OS=Oryza sativa subsp.
japonica GN=PRR1 PE=2 SV=2
Length = 518
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77
+R+L+ D DP R + ++L C Y+VT +++L DI++++V +P
Sbjct: 28 VRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEVDLPVSK 87
Query: 78 GFKLHEQVGLEMDL---PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133
FK+ + + +L P+IMMS V+K + GA YL+KP+R+ EL N+W HV
Sbjct: 88 CFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHV 146
>sp|Q04803|PFER_PSEAE Transcriptional activator protein PfeR OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=pfeR PE=3 SV=1
Length = 305
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
R+L+V+DDP L+ R+ + VT C L+ + +D+V+ D+ +P +DG
Sbjct: 79 RLLLVEDDPRLREDLDAHFRRRGFRVTVCGDGSHGLEA--AGREAFDLVLLDIMLPGLDG 136
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
L E + E PV++MS G QD + G T GA +YL KP + EL
Sbjct: 137 LALLESLRREQATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAEL 184
>sp|P51358|YCF27_PORPU Probable transcriptional regulator ycf27 OS=Porphyra purpurea
GN=ycf27 PE=3 SV=1
Length = 243
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L YEV + E AL + R K +V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFR--KEYPSLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKEL 112
>sp|P48259|YCF27_CYAPA Probable transcriptional regulator ycf27 OS=Cyanophora paradoxa
GN=ycf27 PE=3 SV=1
Length = 239
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L YEV E AL + ++ ++V+ DV MP +DG
Sbjct: 7 KILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHP--NLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 112
>sp|Q1XDC9|YCF27_PORYE Probable transcriptional regulator ycf27 OS=Porphyra yezoensis
GN=ycf27 PE=3 SV=2
Length = 243
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LVVDD+ RILE L YEV + E AL + R K +V+ DV MP +DG
Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALLVFR--KEYPSLVVLDVMMPKLDG 64
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 65 YGVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKEL 112
>sp|Q56128|RCSC_SALTI Sensor protein RcsC OS=Salmonella typhi GN=rcsC PE=3 SV=2
Length = 948
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDD PI R+L L Y+ N AL++L SKN DIV+SDV+MP+MDG+
Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNAIDIVLSDVNMPNMDGY 884
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
+L +++ L + LPV+ ++ + ++ + + G + L KP+ + L+ A++ +
Sbjct: 885 RLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDALKQTLAVYAERVR 944
>sp|Q04848|NTRC_AZOC5 Nitrogen assimilation regulatory protein NtrC OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=ntrC PE=3 SV=2
Length = 480
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLR-MSKNGYDIVISDVHM 73
P G +LV DDD +L + L + YEV C A + R +S+ D+VI+DV M
Sbjct: 2 PTG-SILVADDDAAIRTVLNQALSRAGYEVRSCGNAAT---LWRWVSQGDGDLVITDVVM 57
Query: 74 PDMDGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
PD + F L ++ DLPVI+MS ++ GA YL KP +KEL +I
Sbjct: 58 PDENAFDLLPRIKKARPDLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELISIVGR 117
Query: 133 VAQQPKPFEE 142
+PK E+
Sbjct: 118 ALAEPKKAEK 127
>sp|P58662|RCSC_SALTY Sensor protein RcsC OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=rcsC PE=3 SV=1
Length = 948
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDD PI R+L L Y+ N AL++L SKN DIV+SDV+MP+MDG+
Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNAIDIVLSDVNMPNMDGY 884
Query: 80 KLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
+L +++ L + LPV+ ++ + ++ + + G + L KP+ + L+ A++ +
Sbjct: 885 RLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDVLKQTLAVYAERVR 944
>sp|P14376|RCSC_ECOLI Sensor kinase protein RcsC OS=Escherichia coli (strain K12) GN=rcsC
PE=1 SV=3
Length = 949
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 5 SSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGY 64
S+ AVSD + +LVVDD PI R+L L Y+ N AL++L SKN
Sbjct: 814 STDKAVSDN--DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNHI 869
Query: 65 DIVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123
DIV+SDV+MP+MDG++L +++ L + LPVI ++ + ++ + + G + L KP+ +
Sbjct: 870 DIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929
Query: 124 KELRNIWQHVAQQPKPFEES 143
++ A++ + +S
Sbjct: 930 DVIKQTLTLYAERVRKSRDS 949
>sp|Q9ZVD3|ARR13_ARATH Putative two-component response regulator ARR13 OS=Arabidopsis
thaliana GN=ARR13 PE=2 SV=2
Length = 572
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 6/118 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYE---VTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74
+ V+VVDD+ ++L I +ML K Y V + + AL L+ ++ D++I+D +MP
Sbjct: 16 INVMVVDDNRVFLDIWSRMLEKSKYREITVIAVDYPKKALSTLKNQRDNIDLIITDYYMP 75
Query: 75 DMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131
M+G +L +Q+ E +L V++MS D ++ + ++ GA ++ KPI +L I+Q
Sbjct: 76 GMNGLQLKKQITQEFGNLSVLVMSSDPNKEE--ESLSCGAMGFIPKPIAPTDLPKIYQ 131
>sp|O78428|YCF27_GUITH Probable transcriptional regulator ycf27 OS=Guillardia theta
GN=ycf27 PE=3 SV=1
Length = 254
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
+VL+VDD+ +ILE L Y V + E AL++ D+VI D+ MP +DG
Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMP--DVVILDIMMPKLDG 73
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ + D+P+IM++ G D + G+ GA +Y++KP KEL
Sbjct: 74 YGVCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 121
>sp|P28257|YCF27_GALSU Probable transcriptional regulator ycf27 OS=Galdieria sulphuraria
GN=ycf27 PE=3 SV=1
Length = 255
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++L+ DD+ RILE L YEV AL + K ++V+ DV MP +DG
Sbjct: 9 KILIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFH--KEHPNLVVLDVMMPKIDG 66
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138
+ + +++ E D+P+IM++ G D + G+ GA +Y++KP KEL + V ++
Sbjct: 67 YGVCQEIRKESDIPIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRRVD 126
Query: 139 PFEESD---DSYSVNQGNWRTSNRRKDEEEEAEK 169
F S+ +S +N G + RK + E+
Sbjct: 127 KFYFSNTFTNSGIINIGFLKIDINRKQVYKNEER 160
>sp|Q9C5U0|AHK4_ARATH Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1
Length = 1080
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 15/148 (10%)
Query: 3 PASSSVAVSDQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN 62
P SS A G ++LVVDD+ + R+ L+K EV ++AL +L++
Sbjct: 930 PEGSSPATLKSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHT 989
Query: 63 GYDIVISDVHMPDMDGFKLHEQV-----------GLEMDLPVIMMSVDGCTQDVMKGVTH 111
+D D+ MP MDGF+ Q+ LE LP++ M+ D + +
Sbjct: 990 -FDACFMDIQMPQMDGFEATRQIRMMEKETKEKTNLEWHLPILAMTADVIHATYEECLKS 1048
Query: 112 GACNYLLKPIRIKELRNIWQHVAQQPKP 139
G Y+ KP E N+++ VA+ KP
Sbjct: 1049 GMDGYVSKPF---EEENLYKSVAKSFKP 1073
>sp|Q8FGP6|CHEY_ECOL6 Chemotaxis protein CheY OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=cheY PE=3 SV=3
Length = 129
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE LD L ++ GY VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGLDALNKLQAGGYGFVISDWNMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DG +L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>sp|Q8D0P1|CHEY_YERPE Chemotaxis protein CheY OS=Yersinia pestis GN=cheY PE=3 SV=3
Length = 129
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
LR LVVDD RI+ +L++ + AE +D L ++ G+D V+SD +MP+M
Sbjct: 6 LRFLVVDDFSTMRRIVRNLLKELGFH--NVEEAEDGVDALNKLRAGGFDFVVSDWNMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DG L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 64 DGLDLLKTIRTDGALATLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>sp|Q93P00|CHEY_YEREN Chemotaxis protein CheY OS=Yersinia enterocolitica GN=cheY PE=3
SV=3
Length = 129
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
LR LVVDD RI+ +L++ + AE +D L ++ G+D V+SD +MP+M
Sbjct: 6 LRFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLRTGGFDFVVSDWNMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DG L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 64 DGLDLLKTIRADGALGTLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>sp|P0AE69|CHEY_SHIFL Chemotaxis protein CheY OS=Shigella flexneri GN=cheY PE=3 SV=2
Length = 129
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DG +L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>sp|P0AE67|CHEY_ECOLI Chemotaxis protein CheY OS=Escherichia coli (strain K12) GN=cheY
PE=1 SV=2
Length = 129
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DG +L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>sp|P0AE68|CHEY_ECO57 Chemotaxis protein CheY OS=Escherichia coli O157:H7 GN=cheY PE=3
SV=2
Length = 129
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDM 76
L+ LVVDD RI+ +L++ + AE +D L ++ GY VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 77 DGFKLHEQV---GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
DG +L + + G LPV+M++ + ++++ GA Y++KP L
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>sp|P28835|YCF27_PORAE Probable transcriptional regulator ycf27 OS=Porphyridium aerugineum
GN=ycf27 PE=3 SV=1
Length = 240
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78
++LV+DD+ RILE L Y+V E AL + + + ++V+ D+ MP +DG
Sbjct: 5 KILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFK--REHPNLVVLDLMMPKLDG 62
Query: 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL 126
+ + +++ E D+P+IM++ D + G+ GA +Y++KP KEL
Sbjct: 63 YGVCQELRKESDVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKEL 110
>sp|P14375|ZRAR_ECOLI Transcriptional regulatory protein ZraR OS=Escherichia coli (strain
K12) GN=zraR PE=1 SV=2
Length = 441
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDDD IL+ +LR Y V N AL+ +R + +D+V+ DV M +MDG
Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR--EQVFDLVLCDVRMAEMDGI 65
Query: 80 K-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
L E L +PV++M+ + ++ + GA +YL+KP+
Sbjct: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPL 108
>sp|Q8X613|ZRAR_ECO57 Transcriptional regulatory protein ZraR OS=Escherichia coli O157:H7
GN=zraR PE=3 SV=1
Length = 441
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+LVVDDD IL+ +LR Y V N AL+ +R + +D+V+ DV M +MDG
Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR--ERVFDLVLCDVRMAEMDGI 65
Query: 80 K-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121
L E L +PV++M+ + ++ + GA +YL+KP+
Sbjct: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPL 108
>sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana
GN=APRR2 PE=2 SV=2
Length = 535
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 12 DQFPAGLRVLVV------DDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYD 65
+ FP GL+VL++ D D L Y VT AL + + +
Sbjct: 12 ENFPKGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNPESFH 71
Query: 66 IVISDVHM-PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIK 124
I I +V+M + + FK E + LP IM+S D C MK + GA +L KP+ +
Sbjct: 72 IAIVEVNMSAESESFKFLE--AAKDVLPTIMISTDHCITTTMKCIALGAVEFLQKPLSPE 129
Query: 125 ELRNIWQHVAQQPKPFEESDDSYSVN 150
+L+NIWQHV K F + + S++
Sbjct: 130 KLKNIWQHVVH--KAFNDGGSNVSIS 153
>sp|P10576|NTRC_BRASR Nitrogen assimilation regulatory protein OS=Bradyrhizobium sp.
(strain RP501 Parasponia) GN=ntrC PE=3 SV=1
Length = 480
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLR-MSKNGYDIVISDVHM 73
PAG +LV DDD +L + L + YEV A + R +S+ D+VI+DV M
Sbjct: 2 PAG-SILVADDDTAIRTVLNQALSRAGYEVRLTGNAAT---LWRWVSQGEGDLVITDVVM 57
Query: 74 PDMDGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132
PD + F L ++ + +LPVI+MS ++ GA YL KP +KEL I
Sbjct: 58 PDENAFDLLPRIKKMRPNLPVIVMSAQNTFMTAIRPSERGAYEYLPKPFDLKELITIVGR 117
Query: 133 VAQQPK 138
+PK
Sbjct: 118 ALAEPK 123
>sp|P31079|PETR_RHOCB Protein PetR OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC
16581 / SB1003) GN=petR PE=3 SV=3
Length = 237
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 10/143 (6%)
Query: 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79
+L+VDDD +L+K L + + VT A A +L S +++++ DV MP DG
Sbjct: 9 LLIVDDDERIRGLLQKFLIRNGFLVTAGRDAAHARRLL--SGLEFNLIVLDVMMPGEDGL 66
Query: 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE--------LRNIWQ 131
L + +M P+++++ G T++ ++G+ GA +YL KP KE LR + +
Sbjct: 67 SLTRDLRTKMATPILLLTARGETRERIEGLEAGADDYLPKPFEPKELLLRINAILRRVPE 126
Query: 132 HVAQQPKPFEESDDSYSVNQGNW 154
V PK Y +++G
Sbjct: 127 AVTAGPKYLSLGPLRYDLDRGEL 149
>sp|P10577|NTRC_RHIME Nitrogen assimilation regulatory protein OS=Rhizobium meliloti
(strain 1021) GN=ntrC PE=1 SV=2
Length = 484
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLR-MSKNGYDIVISDVHMPD 75
G +LV DDD +L + L + Y+V + A + R ++ D+V++DV MPD
Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAAT---LWRWIAAGDGDLVVTDVVMPD 59
Query: 76 MDGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134
+ F L ++ DLPV++MS +K GA +YL KP + EL I
Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
Query: 135 QQPK--PFEESDDS 146
+PK P + DDS
Sbjct: 120 AEPKRRPSKLEDDS 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,181,245
Number of Sequences: 539616
Number of extensions: 2836799
Number of successful extensions: 11017
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 476
Number of HSP's that attempted gapping in prelim test: 10237
Number of HSP's gapped (non-prelim): 802
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)