Query 029986
Match_columns 184
No_of_seqs 134 out of 1485
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:44:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.9 2.5E-23 5.3E-28 158.5 17.9 119 18-139 1-121 (229)
2 COG4566 TtrR Response regulato 99.9 1.3E-21 2.8E-26 140.9 9.7 147 17-165 4-151 (202)
3 COG4753 Response regulator con 99.9 4.8E-21 1E-25 156.8 13.5 116 18-135 2-121 (475)
4 COG4565 CitB Response regulato 99.9 1.4E-21 3E-26 143.3 8.0 121 18-140 1-124 (224)
5 COG2204 AtoC Response regulato 99.8 6.2E-20 1.3E-24 150.5 15.9 119 18-138 5-124 (464)
6 PF00072 Response_reg: Respons 99.8 1.4E-19 3E-24 122.7 14.4 110 20-131 1-112 (112)
7 COG2197 CitB Response regulato 99.8 5.5E-19 1.2E-23 133.3 16.0 125 18-144 1-128 (211)
8 PRK10046 dpiA two-component re 99.8 1.2E-17 2.6E-22 127.2 16.4 123 14-138 1-126 (225)
9 COG3947 Response regulator con 99.8 3.4E-18 7.3E-23 130.8 11.3 117 18-138 1-118 (361)
10 PRK10529 DNA-binding transcrip 99.8 7.1E-17 1.5E-21 121.9 18.0 118 18-137 2-119 (225)
11 COG3437 Response regulator con 99.8 1.9E-17 4.2E-22 130.1 13.4 120 14-135 11-134 (360)
12 PRK11173 two-component respons 99.8 1.1E-16 2.3E-21 122.2 17.1 118 18-137 4-121 (237)
13 PRK10840 transcriptional regul 99.8 7.9E-17 1.7E-21 121.7 16.2 124 17-142 3-132 (216)
14 PRK10816 DNA-binding transcrip 99.8 1.4E-16 3E-21 120.3 17.1 118 18-137 1-119 (223)
15 COG0784 CheY FOG: CheY-like re 99.7 2.2E-16 4.8E-21 109.5 16.4 118 16-135 4-125 (130)
16 PRK11517 transcriptional regul 99.7 9.5E-17 2.1E-21 120.9 15.5 119 18-138 1-119 (223)
17 PRK10766 DNA-binding transcrip 99.7 2E-16 4.3E-21 119.2 16.9 118 17-136 2-119 (221)
18 PRK09836 DNA-binding transcrip 99.7 2.2E-16 4.9E-21 119.4 17.2 118 18-137 1-119 (227)
19 PRK10643 DNA-binding transcrip 99.7 3.8E-16 8.2E-21 117.3 17.4 119 18-138 1-120 (222)
20 COG3706 PleD Response regulato 99.7 1.1E-16 2.3E-21 130.6 15.2 122 16-139 131-255 (435)
21 PRK13856 two-component respons 99.7 5.3E-16 1.2E-20 118.8 17.7 117 19-137 3-120 (241)
22 PRK10161 transcriptional regul 99.7 4.2E-16 9.2E-21 118.1 16.9 117 18-136 3-122 (229)
23 CHL00148 orf27 Ycf27; Reviewed 99.7 4.2E-16 9E-21 118.6 16.9 121 16-138 5-125 (240)
24 PRK10336 DNA-binding transcrip 99.7 4.1E-16 9E-21 117.0 16.7 117 18-136 1-118 (219)
25 PRK10701 DNA-binding transcrip 99.7 5.1E-16 1.1E-20 118.6 16.9 118 18-137 2-119 (240)
26 TIGR02154 PhoB phosphate regul 99.7 5.6E-16 1.2E-20 116.5 16.9 119 18-138 3-124 (226)
27 PRK10955 DNA-binding transcrip 99.7 6.5E-16 1.4E-20 117.0 17.1 118 18-138 2-119 (232)
28 PLN03029 type-a response regul 99.7 5.4E-16 1.2E-20 117.9 16.1 120 16-135 7-147 (222)
29 COG4567 Response regulator con 99.7 3.4E-16 7.4E-21 109.0 13.2 113 19-133 11-124 (182)
30 PRK11083 DNA-binding response 99.7 9.5E-16 2.1E-20 115.6 16.9 120 18-139 4-124 (228)
31 PRK09468 ompR osmolarity respo 99.7 1.3E-15 2.8E-20 116.2 17.6 119 17-137 5-124 (239)
32 TIGR03787 marine_sort_RR prote 99.7 1.1E-15 2.4E-20 115.5 16.9 118 19-138 2-122 (227)
33 PRK09958 DNA-binding transcrip 99.7 1.2E-15 2.5E-20 113.5 16.7 121 18-140 1-123 (204)
34 PRK10430 DNA-binding transcrip 99.7 7.8E-16 1.7E-20 118.1 16.2 116 18-133 2-120 (239)
35 PRK09483 response regulator; P 99.7 1.6E-15 3.5E-20 113.8 16.2 122 18-141 2-126 (217)
36 TIGR01387 cztR_silR_copR heavy 99.7 3.6E-15 7.9E-20 111.6 17.0 119 20-140 1-120 (218)
37 PRK11107 hybrid sensory histid 99.7 2.1E-15 4.5E-20 135.1 18.3 121 16-138 666-789 (919)
38 PRK10841 hybrid sensory kinase 99.7 2E-15 4.4E-20 135.3 17.9 119 16-136 800-919 (924)
39 PRK15347 two component system 99.7 1.7E-15 3.6E-20 135.8 16.9 118 16-135 689-811 (921)
40 KOG0519 Sensory transduction h 99.7 7.6E-16 1.6E-20 135.4 14.3 121 14-135 663-785 (786)
41 PRK11697 putative two-componen 99.7 3.2E-15 6.9E-20 114.2 15.4 115 18-136 2-118 (238)
42 PRK10360 DNA-binding transcrip 99.7 6E-15 1.3E-19 109.0 16.4 118 18-139 2-121 (196)
43 PRK11466 hybrid sensory histid 99.7 4.5E-15 9.9E-20 133.0 17.8 122 16-138 680-802 (914)
44 PRK09935 transcriptional regul 99.7 1.3E-14 2.8E-19 108.0 16.6 121 17-139 3-126 (210)
45 PRK14084 two-component respons 99.7 1E-14 2.2E-19 112.1 16.1 115 18-136 1-118 (246)
46 PRK10710 DNA-binding transcrip 99.7 1.8E-14 3.9E-19 109.6 17.1 117 19-137 12-128 (240)
47 TIGR02875 spore_0_A sporulatio 99.6 1.3E-14 2.8E-19 112.7 16.3 118 17-136 2-124 (262)
48 PRK15479 transcriptional regul 99.6 2.4E-14 5.1E-19 107.4 17.1 120 18-139 1-121 (221)
49 PRK10100 DNA-binding transcrip 99.6 6.8E-15 1.5E-19 111.3 14.1 121 17-143 10-134 (216)
50 PRK11361 acetoacetate metaboli 99.6 1.3E-14 2.8E-19 121.1 16.8 120 15-136 2-122 (457)
51 PRK10365 transcriptional regul 99.6 7.3E-15 1.6E-19 122.0 15.1 119 16-136 4-123 (441)
52 PRK15115 response regulator Gl 99.6 1.1E-14 2.3E-19 121.3 16.0 118 17-136 5-123 (444)
53 TIGR02956 TMAO_torS TMAO reduc 99.6 1E-14 2.2E-19 131.5 17.1 118 17-136 702-823 (968)
54 PRK11091 aerobic respiration c 99.6 1.8E-14 3.8E-19 127.4 16.9 119 17-138 525-647 (779)
55 PRK10923 glnG nitrogen regulat 99.6 3.2E-14 7E-19 119.2 16.7 116 18-135 4-120 (469)
56 PRK09959 hybrid sensory histid 99.6 2.9E-14 6.4E-19 131.1 17.4 119 15-135 956-1075(1197)
57 PRK13435 response regulator; P 99.6 7.7E-14 1.7E-18 98.8 15.8 120 17-141 5-126 (145)
58 PRK11475 DNA-binding transcrip 99.6 2.7E-14 5.8E-19 107.4 13.7 112 29-142 2-121 (207)
59 PRK09581 pleD response regulat 99.6 1.7E-14 3.7E-19 119.4 13.0 117 16-135 154-273 (457)
60 TIGR02915 PEP_resp_reg putativ 99.6 4.2E-14 9E-19 117.7 15.3 112 20-135 1-118 (445)
61 PRK09390 fixJ response regulat 99.6 9.5E-14 2.1E-18 102.2 14.9 119 16-136 2-121 (202)
62 PRK15411 rcsA colanic acid cap 99.6 9.6E-14 2.1E-18 104.5 15.0 122 18-142 1-129 (207)
63 TIGR01818 ntrC nitrogen regula 99.6 6.9E-14 1.5E-18 116.9 15.4 114 20-135 1-115 (463)
64 PRK12555 chemotaxis-specific m 99.6 8.6E-14 1.9E-18 112.1 15.3 116 18-135 1-129 (337)
65 PRK09581 pleD response regulat 99.6 2.2E-13 4.8E-18 112.8 16.9 116 18-135 3-121 (457)
66 PRK10610 chemotaxis regulatory 99.6 9E-13 2E-17 89.3 16.4 117 17-135 5-125 (129)
67 PRK10651 transcriptional regul 99.5 7.6E-13 1.6E-17 98.7 17.0 123 16-140 5-130 (216)
68 PRK13558 bacterio-opsin activa 99.5 1.6E-13 3.4E-18 119.5 14.9 118 16-135 6-126 (665)
69 PRK10403 transcriptional regul 99.5 6.8E-13 1.5E-17 98.7 16.1 121 17-139 6-129 (215)
70 PRK15369 two component system 99.5 1E-12 2.2E-17 97.2 16.3 121 17-139 3-126 (211)
71 PRK00742 chemotaxis-specific m 99.5 7.4E-13 1.6E-17 107.3 16.0 117 17-135 3-132 (354)
72 COG2201 CheB Chemotaxis respon 99.5 3E-13 6.5E-18 107.5 12.8 103 18-122 2-108 (350)
73 PRK13837 two-component VirA-li 99.5 2.8E-12 6.1E-17 114.3 18.1 118 17-137 697-815 (828)
74 COG3707 AmiR Response regulato 99.5 7.6E-13 1.6E-17 96.2 11.3 117 17-135 5-122 (194)
75 PRK09191 two-component respons 99.4 6.9E-12 1.5E-16 97.0 15.8 116 17-136 137-254 (261)
76 cd00156 REC Signal receiver do 99.4 3.6E-11 7.8E-16 78.2 13.6 110 21-132 1-111 (113)
77 PRK13557 histidine kinase; Pro 99.4 4.1E-11 8.9E-16 101.2 15.8 120 17-137 415-536 (540)
78 COG3279 LytT Response regulato 99.3 8.4E-11 1.8E-15 90.6 11.7 112 18-133 2-116 (244)
79 PRK10693 response regulator of 99.3 9E-11 1.9E-15 93.3 12.2 88 46-135 2-91 (303)
80 PRK15029 arginine decarboxylas 99.1 1.1E-09 2.4E-14 95.7 13.3 107 18-126 1-122 (755)
81 PRK11107 hybrid sensory histid 98.6 1.8E-06 3.9E-11 77.9 15.5 113 16-134 535-650 (919)
82 PF06490 FleQ: Flagellar regul 98.2 2.3E-05 5.1E-10 52.9 9.8 106 19-133 1-107 (109)
83 COG3706 PleD Response regulato 98.2 3E-06 6.4E-11 69.9 6.3 93 42-137 13-105 (435)
84 smart00448 REC cheY-homologous 98.0 0.00013 2.8E-09 40.2 8.2 54 18-73 1-54 (55)
85 cd02071 MM_CoA_mut_B12_BD meth 97.4 0.015 3.3E-07 39.9 12.9 105 24-130 10-120 (122)
86 PRK02261 methylaspartate mutas 96.9 0.085 1.9E-06 37.0 15.2 116 17-135 3-135 (137)
87 cd02067 B12-binding B12 bindin 96.9 0.04 8.6E-07 37.5 10.9 93 24-118 10-108 (119)
88 PF03709 OKR_DC_1_N: Orn/Lys/A 96.8 0.015 3.2E-07 39.6 8.4 104 29-134 5-112 (115)
89 TIGR00640 acid_CoA_mut_C methy 96.5 0.14 3.1E-06 35.7 11.8 108 24-133 13-126 (132)
90 COG4999 Uncharacterized domain 96.4 0.025 5.5E-07 38.4 7.2 110 17-132 11-123 (140)
91 PRK10618 phosphotransfer inter 96.2 0.017 3.6E-07 52.7 7.0 50 15-72 687-736 (894)
92 TIGR03815 CpaE_hom_Actino heli 95.1 0.13 2.7E-06 41.3 7.7 85 41-134 1-86 (322)
93 PF10087 DUF2325: Uncharacteri 94.9 0.62 1.3E-05 30.5 9.3 87 19-109 1-93 (97)
94 PRK15399 lysine decarboxylase 94.9 0.54 1.2E-05 41.9 11.4 79 18-100 1-86 (713)
95 PF02310 B12-binding: B12 bind 94.6 0.84 1.8E-05 30.7 9.8 93 26-120 13-112 (121)
96 PRK15400 lysine decarboxylase 94.4 0.71 1.5E-05 41.1 10.9 79 18-100 1-86 (714)
97 TIGR01501 MthylAspMutase methy 94.3 1.2 2.7E-05 31.1 12.5 108 25-134 13-132 (134)
98 cd04728 ThiG Thiazole synthase 94.2 0.99 2.1E-05 34.8 10.2 110 18-135 94-225 (248)
99 PRK00208 thiG thiazole synthas 93.9 1.2 2.7E-05 34.4 10.1 110 18-135 94-225 (250)
100 cd02069 methionine_synthase_B1 93.9 1.6 3.5E-05 33.0 10.8 102 17-120 88-202 (213)
101 cd02070 corrinoid_protein_B12- 93.7 2.2 4.7E-05 31.9 11.8 97 17-118 82-190 (201)
102 PRK05718 keto-hydroxyglutarate 93.6 2.4 5.2E-05 32.1 11.8 97 33-132 8-106 (212)
103 TIGR00262 trpA tryptophan synt 93.0 1.3 2.8E-05 34.5 9.3 60 77-136 73-139 (256)
104 PRK10128 2-keto-3-deoxy-L-rham 93.0 2.2 4.7E-05 33.5 10.5 100 32-133 8-112 (267)
105 PRK10558 alpha-dehydro-beta-de 92.9 2.1 4.4E-05 33.4 10.2 100 32-133 9-113 (256)
106 PF07688 KaiA: KaiA domain; I 92.5 0.93 2E-05 35.1 7.5 77 19-98 2-79 (283)
107 COG2185 Sbm Methylmalonyl-CoA 92.2 3 6.4E-05 29.5 10.6 113 18-134 13-137 (143)
108 TIGR03239 GarL 2-dehydro-3-deo 92.2 3.3 7.1E-05 32.1 10.5 81 51-133 23-106 (249)
109 TIGR01182 eda Entner-Doudoroff 91.9 4.3 9.2E-05 30.6 10.7 85 44-131 13-98 (204)
110 PRK01130 N-acetylmannosamine-6 91.7 4.1 8.8E-05 30.7 10.4 86 30-118 107-201 (221)
111 PRK09426 methylmalonyl-CoA mut 91.0 5.3 0.00011 35.9 11.7 108 25-134 594-707 (714)
112 TIGR02370 pyl_corrinoid methyl 90.9 5.2 0.00011 29.8 10.1 95 19-118 86-192 (197)
113 PRK05749 3-deoxy-D-manno-octul 90.8 5.7 0.00012 32.9 11.4 111 17-135 262-387 (425)
114 cd02072 Glm_B12_BD B12 binding 90.8 4.1 8.8E-05 28.3 11.4 103 25-130 11-126 (128)
115 cd04724 Tryptophan_synthase_al 90.6 1.8 3.9E-05 33.3 7.7 60 77-136 63-128 (242)
116 TIGR02311 HpaI 2,4-dihydroxyhe 90.4 6.5 0.00014 30.4 10.6 82 51-134 23-107 (249)
117 PRK00043 thiE thiamine-phospha 90.4 5.8 0.00013 29.4 11.8 69 46-118 110-187 (212)
118 cd06533 Glyco_transf_WecG_TagA 90.0 3.5 7.7E-05 29.9 8.4 76 17-96 46-130 (171)
119 TIGR01334 modD putative molybd 89.8 3.1 6.7E-05 32.9 8.3 94 20-117 159-261 (277)
120 PRK13111 trpA tryptophan synth 89.6 2.3 4.9E-05 33.2 7.5 59 78-136 76-141 (258)
121 TIGR01305 GMP_reduct_1 guanosi 89.5 2.7 6E-05 34.0 7.9 58 62-119 120-178 (343)
122 PRK06015 keto-hydroxyglutarate 89.5 7.4 0.00016 29.2 10.1 63 68-131 32-94 (201)
123 CHL00200 trpA tryptophan synth 89.2 2.1 4.5E-05 33.6 7.0 59 78-136 79-143 (263)
124 TIGR03151 enACPred_II putative 89.1 8.4 0.00018 30.9 10.5 82 33-117 101-188 (307)
125 TIGR02855 spore_yabG sporulati 89.0 6.4 0.00014 30.9 9.4 104 14-121 101-227 (283)
126 COG0512 PabA Anthranilate/para 88.9 2.7 5.9E-05 31.1 7.0 75 18-96 2-80 (191)
127 PLN02591 tryptophan synthase 88.9 2.4 5.2E-05 32.9 7.1 60 77-136 65-130 (250)
128 PRK01911 ppnK inorganic polyph 88.8 4.6 0.0001 32.1 8.8 105 18-141 1-125 (292)
129 PF14097 SpoVAE: Stage V sporu 88.7 7.5 0.00016 28.3 9.5 80 20-99 3-94 (180)
130 PF03808 Glyco_tran_WecB: Glyc 88.7 7.4 0.00016 28.2 9.4 76 17-96 48-132 (172)
131 PF05582 Peptidase_U57: YabG p 88.7 6 0.00013 31.2 9.0 106 12-121 100-228 (287)
132 PRK08385 nicotinate-nucleotide 88.6 11 0.00023 29.9 10.7 93 20-117 157-257 (278)
133 PF05690 ThiG: Thiazole biosyn 87.7 9.3 0.0002 29.4 9.3 96 34-133 116-223 (247)
134 cd02068 radical_SAM_B12_BD B12 87.3 7.2 0.00016 26.5 10.8 106 29-136 4-113 (127)
135 cd00564 TMP_TenI Thiamine mono 87.3 9.2 0.0002 27.7 9.4 68 47-118 102-177 (196)
136 PRK07896 nicotinate-nucleotide 87.2 7.1 0.00015 31.0 8.9 94 20-117 173-272 (289)
137 PF01729 QRPTase_C: Quinolinat 87.1 4.7 0.0001 29.3 7.3 94 20-117 53-153 (169)
138 PRK05848 nicotinate-nucleotide 87.0 5.9 0.00013 31.2 8.3 95 20-118 155-256 (273)
139 TIGR00696 wecB_tagA_cpsF bacte 86.9 6.9 0.00015 28.7 8.2 76 16-95 47-130 (177)
140 TIGR03088 stp2 sugar transfera 86.8 12 0.00027 30.0 10.5 107 17-135 229-337 (374)
141 TIGR00343 pyridoxal 5'-phospha 86.7 9.7 0.00021 30.1 9.2 60 77-136 184-250 (287)
142 PF01081 Aldolase: KDPG and KH 86.5 3 6.6E-05 31.1 6.2 63 68-132 36-99 (196)
143 COG0157 NadC Nicotinate-nucleo 86.4 7.9 0.00017 30.5 8.6 92 20-116 161-259 (280)
144 PF03602 Cons_hypoth95: Conser 86.4 5.4 0.00012 29.4 7.4 69 18-86 66-138 (183)
145 PF01408 GFO_IDH_MocA: Oxidore 86.0 8 0.00017 25.7 9.8 38 100-137 74-113 (120)
146 PLN02871 UDP-sulfoquinovose:DA 85.6 20 0.00043 30.2 11.4 108 17-136 290-400 (465)
147 PF01596 Methyltransf_3: O-met 85.3 12 0.00026 28.1 8.9 60 13-72 66-130 (205)
148 PRK03708 ppnK inorganic polyph 85.3 13 0.00029 29.3 9.5 104 18-140 1-116 (277)
149 TIGR00693 thiE thiamine-phosph 85.1 13 0.00028 27.3 9.1 70 45-118 101-179 (196)
150 PRK10669 putative cation:proto 84.8 25 0.00053 30.6 11.8 70 63-138 481-551 (558)
151 PRK15320 transcriptional activ 84.7 4.7 0.0001 30.3 6.3 98 19-119 3-102 (251)
152 PF02581 TMP-TENI: Thiamine mo 84.6 13 0.00029 27.0 10.0 79 36-118 91-176 (180)
153 cd04727 pdxS PdxS is a subunit 84.3 15 0.00032 29.1 9.2 59 77-135 181-246 (283)
154 CHL00162 thiG thiamin biosynth 84.3 18 0.00039 28.3 12.6 98 34-135 130-239 (267)
155 PRK03958 tRNA 2'-O-methylase; 84.2 14 0.00031 27.1 10.0 92 19-118 33-127 (176)
156 COG3010 NanE Putative N-acetyl 84.1 16 0.00035 27.6 9.6 86 43-134 130-226 (229)
157 TIGR02026 BchE magnesium-proto 83.6 27 0.00059 29.9 12.7 109 26-137 21-139 (497)
158 KOG4175 Tryptophan synthase al 83.5 6.4 0.00014 29.6 6.5 49 89-137 94-148 (268)
159 PRK03372 ppnK inorganic polyph 82.4 21 0.00046 28.6 9.7 106 18-142 6-134 (306)
160 PRK04885 ppnK inorganic polyph 82.2 8.2 0.00018 30.3 7.2 60 63-141 35-98 (265)
161 cd04729 NanE N-acetylmannosami 82.1 19 0.00042 27.0 11.3 72 45-119 128-206 (219)
162 PRK03692 putative UDP-N-acetyl 81.7 16 0.00035 28.2 8.5 76 16-95 104-187 (243)
163 cd05212 NAD_bind_m-THF_DH_Cycl 81.2 11 0.00024 26.5 6.9 56 16-75 27-83 (140)
164 PRK14075 pnk inorganic polypho 81.2 24 0.00051 27.5 10.3 96 18-140 1-98 (256)
165 PRK05458 guanosine 5'-monophos 81.1 6.8 0.00015 31.7 6.5 54 63-117 111-166 (326)
166 cd04730 NPD_like 2-Nitropropan 81.0 22 0.00047 26.9 11.2 83 34-119 95-185 (236)
167 PRK06552 keto-hydroxyglutarate 80.9 22 0.00047 26.9 11.1 94 35-131 8-106 (213)
168 PRK15484 lipopolysaccharide 1, 80.4 30 0.00066 28.2 13.4 110 17-136 224-344 (380)
169 TIGR00007 phosphoribosylformim 80.2 15 0.00032 27.8 7.9 66 51-118 148-217 (230)
170 COG2022 ThiG Uncharacterized e 80.2 22 0.00048 27.4 8.5 97 34-134 123-231 (262)
171 PF04131 NanE: Putative N-acet 80.0 12 0.00026 27.8 6.9 70 41-117 45-116 (192)
172 PRK00994 F420-dependent methyl 79.9 9.9 0.00021 29.3 6.6 80 41-121 31-117 (277)
173 TIGR01579 MiaB-like-C MiaB-lik 79.9 34 0.00073 28.5 10.7 98 23-134 6-108 (414)
174 PLN02274 inosine-5'-monophosph 79.6 11 0.00023 32.6 7.5 67 49-118 248-316 (505)
175 PRK05096 guanosine 5'-monophos 79.6 11 0.00024 30.7 7.1 54 62-116 121-176 (346)
176 PRK06096 molybdenum transport 78.9 17 0.00036 28.9 7.9 71 43-117 192-262 (284)
177 PF00534 Glycos_transf_1: Glyc 78.9 20 0.00042 25.2 9.4 109 16-136 46-158 (172)
178 PF01993 MTD: methylene-5,6,7, 78.7 6.6 0.00014 30.3 5.3 61 61-122 57-117 (276)
179 cd03813 GT1_like_3 This family 78.7 39 0.00085 28.6 11.5 108 17-136 324-442 (475)
180 TIGR01306 GMP_reduct_2 guanosi 78.5 12 0.00026 30.2 7.1 56 64-119 109-165 (321)
181 PF11072 DUF2859: Protein of u 78.4 16 0.00036 25.8 6.9 69 19-97 64-138 (142)
182 cd04723 HisA_HisF Phosphoribos 78.2 16 0.00035 27.9 7.5 67 50-118 148-217 (233)
183 TIGR03765 ICE_PFL_4695 integra 78.2 17 0.00038 24.2 6.6 69 19-97 26-100 (105)
184 COG3836 HpcH 2,4-dihydroxyhept 78.0 30 0.00064 26.8 9.6 97 32-131 7-109 (255)
185 PRK13125 trpA tryptophan synth 77.9 15 0.00031 28.3 7.3 57 80-136 64-128 (244)
186 PRK02649 ppnK inorganic polyph 77.7 19 0.00042 28.8 8.1 95 29-142 18-130 (305)
187 PRK00748 1-(5-phosphoribosyl)- 77.5 19 0.0004 27.2 7.8 66 51-118 149-219 (233)
188 COG0742 N6-adenine-specific me 77.5 7.9 0.00017 28.7 5.4 56 18-74 67-125 (187)
189 PRK07649 para-aminobenzoate/an 77.5 4.1 9E-05 30.3 4.0 74 20-97 2-79 (195)
190 PRK06843 inosine 5-monophospha 77.3 15 0.00032 30.7 7.5 56 61-117 163-220 (404)
191 PRK07428 nicotinate-nucleotide 77.2 20 0.00044 28.5 8.0 93 20-117 169-269 (288)
192 PRK03378 ppnK inorganic polyph 77.2 24 0.00052 28.1 8.4 103 19-140 7-123 (292)
193 COG0352 ThiE Thiamine monophos 76.9 27 0.00058 26.4 8.2 68 46-117 110-184 (211)
194 PF02254 TrkA_N: TrkA-N domain 76.7 19 0.0004 23.7 7.9 92 18-118 22-115 (116)
195 TIGR00734 hisAF_rel hisA/hisF 76.7 23 0.00051 26.8 8.0 68 49-118 142-212 (221)
196 PRK07695 transcriptional regul 76.2 29 0.00062 25.7 8.6 67 46-116 101-174 (201)
197 PRK09922 UDP-D-galactose:(gluc 76.1 39 0.00085 27.2 10.3 111 17-138 210-326 (359)
198 PRK02155 ppnK NAD(+)/NADH kina 75.7 29 0.00062 27.6 8.5 103 19-140 7-123 (291)
199 cd03823 GT1_ExpE7_like This fa 75.6 36 0.00077 26.5 12.2 75 51-135 254-328 (359)
200 PRK11840 bifunctional sulfur c 75.4 42 0.00091 27.2 10.7 114 18-135 168-299 (326)
201 cd04962 GT1_like_5 This family 75.1 40 0.00087 26.8 10.8 106 18-135 228-335 (371)
202 PRK06978 nicotinate-nucleotide 74.4 43 0.00092 26.8 10.3 91 19-116 178-274 (294)
203 TIGR01302 IMP_dehydrog inosine 74.3 17 0.00038 30.7 7.4 55 61-116 234-290 (450)
204 PF00290 Trp_syntA: Tryptophan 74.3 6.9 0.00015 30.6 4.6 56 78-133 74-136 (259)
205 PRK06774 para-aminobenzoate sy 73.4 6.5 0.00014 28.9 4.2 74 20-97 2-79 (191)
206 PRK03659 glutathione-regulated 73.4 42 0.00091 29.6 9.7 54 63-119 464-518 (601)
207 PRK04539 ppnK inorganic polyph 73.3 35 0.00076 27.2 8.5 104 19-141 7-129 (296)
208 PF03328 HpcH_HpaI: HpcH/HpaI 73.3 37 0.0008 25.5 9.7 84 49-134 9-107 (221)
209 PRK04180 pyridoxal biosynthesi 73.2 14 0.00031 29.3 6.1 60 77-136 190-256 (293)
210 cd04731 HisF The cyclase subun 73.2 31 0.00067 26.3 8.0 69 48-118 27-99 (243)
211 PRK11889 flhF flagellar biosyn 73.0 56 0.0012 27.6 11.0 55 17-71 269-328 (436)
212 PF04131 NanE: Putative N-acet 72.9 37 0.00079 25.3 9.5 83 30-118 81-172 (192)
213 TIGR00736 nifR3_rel_arch TIM-b 72.7 30 0.00064 26.6 7.7 58 61-118 159-219 (231)
214 PRK13587 1-(5-phosphoribosyl)- 72.7 32 0.00069 26.3 7.9 54 65-118 164-220 (234)
215 TIGR01303 IMP_DH_rel_1 IMP deh 72.5 24 0.00053 30.2 7.8 67 48-117 224-292 (475)
216 cd02065 B12-binding_like B12 b 72.2 26 0.00056 23.3 7.4 71 24-96 10-86 (125)
217 PF03060 NMO: Nitronate monoox 72.0 51 0.0011 26.6 10.0 81 34-117 129-217 (330)
218 PRK14077 pnk inorganic polypho 71.8 36 0.00078 27.0 8.2 104 19-141 12-125 (287)
219 PRK01231 ppnK inorganic polyph 71.8 49 0.0011 26.4 10.9 108 15-141 2-123 (295)
220 PRK14076 pnk inorganic polypho 71.5 31 0.00067 30.2 8.4 106 17-141 290-409 (569)
221 PRK14329 (dimethylallyl)adenos 71.0 62 0.0013 27.6 10.0 100 23-136 33-141 (467)
222 COG4122 Predicted O-methyltran 70.9 32 0.0007 26.2 7.4 61 13-74 80-143 (219)
223 cd00452 KDPG_aldolase KDPG and 70.9 36 0.00078 25.0 7.7 68 46-119 103-171 (190)
224 PRK01185 ppnK inorganic polyph 70.8 50 0.0011 26.0 8.9 103 18-141 1-110 (271)
225 PRK00278 trpC indole-3-glycero 70.7 48 0.001 25.8 13.1 90 26-118 145-239 (260)
226 PF04321 RmlD_sub_bind: RmlD s 70.5 8.8 0.00019 30.2 4.5 54 18-73 1-61 (286)
227 cd00331 IGPS Indole-3-glycerol 70.4 43 0.00092 25.0 11.8 79 37-118 117-200 (217)
228 PRK09283 delta-aminolevulinic 69.5 15 0.00033 29.5 5.5 70 42-115 220-290 (323)
229 PRK07114 keto-hydroxyglutarate 69.1 49 0.0011 25.3 11.9 94 35-131 10-109 (222)
230 PRK06559 nicotinate-nucleotide 69.1 57 0.0012 26.0 10.4 91 19-116 169-266 (290)
231 PLN02716 nicotinate-nucleotide 68.8 60 0.0013 26.1 9.5 97 20-116 173-287 (308)
232 PRK06895 putative anthranilate 68.7 11 0.00023 27.7 4.4 32 17-48 1-32 (190)
233 cd00331 IGPS Indole-3-glycerol 68.5 36 0.00078 25.4 7.4 70 64-133 45-117 (217)
234 PLN02781 Probable caffeoyl-CoA 68.5 50 0.0011 25.2 8.6 58 15-72 91-153 (234)
235 cd01568 QPRTase_NadC Quinolina 68.5 29 0.00063 27.2 7.0 95 19-118 153-254 (269)
236 PRK01033 imidazole glycerol ph 68.4 46 0.00099 25.8 8.1 66 50-117 154-224 (258)
237 PF09936 Methyltrn_RNA_4: SAM- 68.3 46 0.00099 24.6 7.5 101 19-122 44-161 (185)
238 PRK15427 colanic acid biosynth 68.2 68 0.0015 26.5 13.0 108 17-135 253-369 (406)
239 PRK02615 thiamine-phosphate py 68.2 53 0.0012 26.9 8.6 69 45-117 245-320 (347)
240 PRK12724 flagellar biosynthesi 68.2 74 0.0016 26.9 11.5 116 17-134 252-383 (432)
241 cd03819 GT1_WavL_like This fam 68.2 57 0.0012 25.6 12.3 109 17-135 216-329 (355)
242 PRK08007 para-aminobenzoate sy 68.1 9.2 0.0002 28.1 4.0 87 20-114 2-92 (187)
243 PRK10742 putative methyltransf 67.8 35 0.00075 26.6 7.1 58 17-77 110-178 (250)
244 PLN02274 inosine-5'-monophosph 67.8 81 0.0018 27.3 10.3 98 18-118 261-379 (505)
245 cd04823 ALAD_PBGS_aspartate_ri 67.7 16 0.00035 29.3 5.4 66 48-116 222-288 (320)
246 PTZ00314 inosine-5'-monophosph 67.6 81 0.0018 27.2 10.3 30 89-118 343-372 (495)
247 COG0159 TrpA Tryptophan syntha 67.3 38 0.00082 26.6 7.3 56 78-134 81-144 (265)
248 PF00478 IMPDH: IMP dehydrogen 67.2 32 0.0007 28.2 7.1 67 49-118 108-176 (352)
249 PRK14098 glycogen synthase; Pr 67.1 81 0.0017 27.0 11.5 111 17-134 336-449 (489)
250 TIGR00566 trpG_papA glutamine 67.1 12 0.00026 27.5 4.4 74 20-97 2-79 (188)
251 PRK08535 translation initiatio 66.9 55 0.0012 26.3 8.4 79 16-99 145-231 (310)
252 cd04726 KGPDC_HPS 3-Keto-L-gul 66.7 48 0.001 24.3 11.7 86 29-118 91-185 (202)
253 cd04732 HisA HisA. Phosphorib 66.6 52 0.0011 24.8 8.0 67 50-118 148-218 (234)
254 COG4262 Predicted spermidine s 66.5 40 0.00086 28.1 7.4 63 13-77 309-379 (508)
255 PRK08999 hypothetical protein; 66.2 48 0.001 26.3 8.0 69 45-117 231-306 (312)
256 cd08187 BDH Butanol dehydrogen 66.1 74 0.0016 26.2 9.9 63 18-85 29-105 (382)
257 PLN02935 Bifunctional NADH kin 66.1 88 0.0019 27.1 10.7 61 63-142 262-324 (508)
258 PRK13384 delta-aminolevulinic 66.0 19 0.00041 29.0 5.4 70 42-115 221-291 (322)
259 PRK09016 quinolinate phosphori 65.9 68 0.0015 25.7 9.0 91 20-117 182-278 (296)
260 PRK09140 2-dehydro-3-deoxy-6-p 65.4 56 0.0012 24.5 11.2 94 35-131 5-101 (206)
261 PRK05567 inosine 5'-monophosph 64.9 69 0.0015 27.4 9.1 98 17-118 240-359 (486)
262 PRK03562 glutathione-regulated 64.9 85 0.0019 27.8 9.9 92 17-117 423-516 (621)
263 PRK06806 fructose-bisphosphate 64.6 52 0.0011 26.1 7.7 88 46-135 151-246 (281)
264 PRK04128 1-(5-phosphoribosyl)- 64.1 59 0.0013 24.8 7.8 82 48-131 30-116 (228)
265 TIGR01163 rpe ribulose-phospha 64.0 56 0.0012 24.0 9.7 58 77-134 43-101 (210)
266 cd04951 GT1_WbdM_like This fam 63.8 70 0.0015 25.1 10.0 105 17-135 219-325 (360)
267 PRK13566 anthranilate synthase 63.1 33 0.00071 31.0 7.0 80 14-97 523-605 (720)
268 PLN02823 spermine synthase 62.8 33 0.00071 27.9 6.4 55 17-74 127-187 (336)
269 PRK05567 inosine 5'-monophosph 62.6 43 0.00092 28.7 7.4 55 62-117 239-295 (486)
270 PRK04148 hypothetical protein; 62.2 30 0.00064 24.2 5.3 58 17-78 17-74 (134)
271 TIGR03061 pip_yhgE_Nterm YhgE/ 62.1 36 0.00077 24.3 6.0 52 15-69 41-102 (164)
272 PLN02335 anthranilate synthase 61.9 16 0.00035 27.7 4.4 53 17-71 18-70 (222)
273 TIGR02082 metH 5-methyltetrahy 61.8 1.2E+02 0.0027 29.2 10.7 99 18-118 733-844 (1178)
274 KOG2550 IMP dehydrogenase/GMP 61.5 35 0.00076 28.7 6.3 68 46-116 248-317 (503)
275 cd01948 EAL EAL domain. This d 61.4 56 0.0012 24.2 7.3 89 32-123 136-238 (240)
276 COG1224 TIP49 DNA helicase TIP 61.2 14 0.00029 30.6 3.9 70 64-133 292-373 (450)
277 COG0421 SpeE Spermidine syntha 61.2 81 0.0018 25.0 8.6 66 18-86 101-177 (282)
278 PRK14331 (dimethylallyl)adenos 61.1 74 0.0016 26.8 8.5 99 23-135 10-117 (437)
279 PRK11359 cyclic-di-GMP phospho 60.8 1.3E+02 0.0027 27.1 11.6 100 31-133 681-794 (799)
280 PRK07807 inosine 5-monophospha 60.6 44 0.00095 28.7 7.1 64 51-117 229-294 (479)
281 CHL00101 trpG anthranilate syn 60.3 17 0.00038 26.7 4.2 49 20-70 2-50 (190)
282 PRK15490 Vi polysaccharide bio 60.1 1.2E+02 0.0027 26.7 12.7 102 17-130 429-532 (578)
283 TIGR01163 rpe ribulose-phospha 59.9 52 0.0011 24.2 6.8 55 64-119 127-193 (210)
284 PRK02083 imidazole glycerol ph 59.6 78 0.0017 24.3 10.2 79 51-131 156-245 (253)
285 PRK05670 anthranilate synthase 59.5 18 0.00039 26.5 4.2 48 20-69 2-49 (189)
286 PRK10060 RNase II stability mo 59.4 1.3E+02 0.0028 26.8 11.0 103 28-133 541-657 (663)
287 PRK14333 (dimethylallyl)adenos 59.4 84 0.0018 26.6 8.6 100 22-135 15-123 (448)
288 PF02882 THF_DHG_CYH_C: Tetrah 59.2 26 0.00057 25.2 4.8 58 16-76 35-92 (160)
289 cd03804 GT1_wbaZ_like This fam 58.9 89 0.0019 24.7 10.5 106 18-137 222-327 (351)
290 PRK14330 (dimethylallyl)adenos 58.8 88 0.0019 26.3 8.6 99 23-136 10-115 (434)
291 TIGR00511 ribulose_e2b2 ribose 58.7 66 0.0014 25.7 7.4 79 16-99 140-226 (301)
292 cd03820 GT1_amsD_like This fam 58.7 80 0.0017 24.1 12.2 109 16-135 208-318 (348)
293 PRK06372 translation initiatio 58.5 87 0.0019 24.5 8.6 76 18-98 110-193 (253)
294 cd08185 Fe-ADH1 Iron-containin 58.5 1E+02 0.0022 25.3 9.1 63 18-85 26-102 (380)
295 cd00384 ALAD_PBGS Porphobilino 58.5 30 0.00066 27.8 5.3 70 42-115 212-282 (314)
296 PF06068 TIP49: TIP49 C-termin 58.5 3.2 6.9E-05 34.3 -0.1 71 64-134 279-361 (398)
297 cd08179 NADPH_BDH NADPH-depend 58.3 1E+02 0.0022 25.3 10.6 63 18-85 24-100 (375)
298 PF01959 DHQS: 3-dehydroquinat 58.1 1E+02 0.0023 25.3 9.8 88 46-135 80-169 (354)
299 PRK13143 hisH imidazole glycer 58.1 44 0.00095 24.7 6.1 44 18-69 1-44 (200)
300 PF01729 QRPTase_C: Quinolinat 58.1 60 0.0013 23.6 6.5 58 77-135 65-123 (169)
301 cd04824 eu_ALAD_PBGS_cysteine_ 58.0 33 0.00072 27.6 5.5 70 42-115 217-288 (320)
302 PLN02929 NADH kinase 57.8 98 0.0021 24.8 8.7 104 26-140 32-141 (301)
303 TIGR00262 trpA tryptophan synt 57.7 88 0.0019 24.3 11.2 101 20-121 119-229 (256)
304 cd04949 GT1_gtfA_like This fam 57.6 97 0.0021 24.7 11.0 67 64-136 279-345 (372)
305 cd04731 HisF The cyclase subun 57.6 83 0.0018 23.9 8.2 58 61-118 160-222 (243)
306 cd01573 modD_like ModD; Quinol 57.5 93 0.002 24.5 8.3 70 44-118 187-257 (272)
307 PRK12704 phosphodiesterase; Pr 57.5 17 0.00037 31.4 4.2 45 90-134 248-295 (520)
308 cd00429 RPE Ribulose-5-phospha 57.2 56 0.0012 23.9 6.6 54 64-118 128-193 (211)
309 cd03825 GT1_wcfI_like This fam 57.0 64 0.0014 25.4 7.3 76 18-97 1-83 (365)
310 cd04726 KGPDC_HPS 3-Keto-L-gul 57.0 53 0.0011 24.0 6.4 21 108-128 99-121 (202)
311 cd03801 GT1_YqgM_like This fam 57.0 87 0.0019 24.0 11.6 108 17-136 230-341 (374)
312 PRK05637 anthranilate synthase 56.7 31 0.00068 25.9 5.1 50 18-70 2-51 (208)
313 PRK04457 spermidine synthase; 56.4 93 0.002 24.2 8.9 53 17-72 90-145 (262)
314 TIGR00524 eIF-2B_rel eIF-2B al 56.2 60 0.0013 26.0 6.8 81 16-99 151-240 (303)
315 cd04722 TIM_phosphate_binding 56.0 52 0.0011 23.3 6.1 57 62-118 135-198 (200)
316 PRK14191 bifunctional 5,10-met 55.7 54 0.0012 26.1 6.4 58 16-77 156-214 (285)
317 PRK08649 inosine 5-monophospha 55.5 1.2E+02 0.0026 25.1 11.9 66 49-118 142-214 (368)
318 PRK07765 para-aminobenzoate sy 55.4 29 0.00062 26.2 4.7 79 18-97 1-83 (214)
319 TIGR00089 RNA modification enz 55.4 1.2E+02 0.0025 25.5 8.7 98 23-134 9-113 (429)
320 TIGR01761 thiaz-red thiazoliny 55.0 1.2E+02 0.0025 24.9 11.5 38 100-137 78-115 (343)
321 PRK06843 inosine 5-monophospha 54.9 1.3E+02 0.0028 25.3 10.8 99 17-118 165-284 (404)
322 PRK01362 putative translaldola 54.6 93 0.002 23.6 8.1 82 35-120 95-185 (214)
323 PRK08335 translation initiatio 54.4 99 0.0021 24.5 7.6 79 16-99 134-220 (275)
324 TIGR01037 pyrD_sub1_fam dihydr 54.3 1.1E+02 0.0023 24.2 11.5 59 80-138 224-288 (300)
325 PRK07428 nicotinate-nucleotide 54.3 71 0.0015 25.4 6.9 41 93-134 198-238 (288)
326 PRK07764 DNA polymerase III su 54.2 54 0.0012 30.2 6.9 73 62-136 119-194 (824)
327 PLN02476 O-methyltransferase 54.2 1.1E+02 0.0024 24.3 8.2 58 15-72 141-203 (278)
328 PRK13585 1-(5-phosphoribosyl)- 54.2 94 0.002 23.5 9.0 77 49-127 150-236 (241)
329 COG1091 RfbD dTDP-4-dehydrorha 54.1 44 0.00096 26.5 5.7 51 18-71 1-58 (281)
330 PRK05703 flhF flagellar biosyn 54.1 1.3E+02 0.0029 25.3 10.9 118 17-135 251-382 (424)
331 COG1927 Mtd Coenzyme F420-depe 54.0 97 0.0021 23.6 8.9 60 61-121 58-117 (277)
332 PRK09490 metH B12-dependent me 54.0 1.4E+02 0.0031 28.9 9.7 98 18-117 752-862 (1229)
333 PRK14994 SAM-dependent 16S rib 53.4 1.1E+02 0.0023 24.4 7.8 78 18-98 38-121 (287)
334 PRK09860 putative alcohol dehy 53.4 1.3E+02 0.0028 24.9 9.9 63 18-85 32-107 (383)
335 PLN02898 HMP-P kinase/thiamin- 53.2 1.4E+02 0.003 25.6 9.1 66 45-114 395-467 (502)
336 KOG1562 Spermidine synthase [A 53.2 1E+02 0.0023 24.8 7.5 61 19-81 147-213 (337)
337 COG1411 Uncharacterized protei 53.1 95 0.002 23.5 6.8 72 47-119 136-210 (229)
338 cd03818 GT1_ExpC_like This fam 52.9 1.2E+02 0.0027 24.6 10.5 76 50-136 291-366 (396)
339 PRK08072 nicotinate-nucleotide 52.8 1.1E+02 0.0025 24.1 9.6 91 19-118 160-259 (277)
340 PRK06543 nicotinate-nucleotide 52.7 1.2E+02 0.0025 24.2 12.1 91 19-116 161-262 (281)
341 PF00497 SBP_bac_3: Bacterial 52.6 85 0.0018 22.6 7.2 52 16-71 109-160 (225)
342 PRK05581 ribulose-phosphate 3- 52.6 93 0.002 23.0 7.6 55 64-118 132-197 (220)
343 TIGR03572 WbuZ glycosyl amidat 52.4 99 0.0022 23.3 8.2 58 61-118 164-226 (232)
344 TIGR02990 ectoine_eutA ectoine 52.4 1.1E+02 0.0023 23.6 8.4 74 19-94 122-210 (239)
345 PRK08185 hypothetical protein; 52.3 94 0.002 24.7 7.3 67 47-116 148-225 (283)
346 TIGR01859 fruc_bis_ald_ fructo 52.3 78 0.0017 25.0 6.9 86 47-134 152-245 (282)
347 TIGR00735 hisF imidazoleglycer 52.0 1.1E+02 0.0023 23.6 9.7 71 61-131 166-247 (254)
348 PF01564 Spermine_synth: Sperm 51.7 42 0.00092 25.9 5.2 58 16-77 99-164 (246)
349 PRK02231 ppnK inorganic polyph 51.3 96 0.0021 24.4 7.2 86 31-135 3-97 (272)
350 TIGR03572 WbuZ glycosyl amidat 51.3 1E+02 0.0022 23.2 8.1 70 48-119 30-103 (232)
351 COG0313 Predicted methyltransf 51.1 1.2E+02 0.0027 24.0 10.4 83 18-101 31-117 (275)
352 PRK03501 ppnK inorganic polyph 50.7 1.2E+02 0.0026 23.8 7.8 75 33-139 22-100 (264)
353 COG3959 Transketolase, N-termi 50.6 54 0.0012 25.2 5.3 53 20-72 174-241 (243)
354 TIGR03449 mycothiol_MshA UDP-N 50.6 1.4E+02 0.0029 24.3 12.3 107 18-135 253-367 (405)
355 COG0800 Eda 2-keto-3-deoxy-6-p 50.1 1.1E+02 0.0024 23.2 11.2 95 34-131 7-103 (211)
356 PF00977 His_biosynth: Histidi 49.9 1.1E+02 0.0023 23.3 7.1 69 49-118 148-219 (229)
357 PF01008 IF-2B: Initiation fac 49.8 31 0.00068 26.9 4.3 80 16-99 132-219 (282)
358 cd01080 NAD_bind_m-THF_DH_Cycl 49.8 91 0.002 22.5 6.4 56 16-75 43-99 (168)
359 cd00381 IMPDH IMPDH: The catal 49.7 1.3E+02 0.0029 24.2 7.9 57 61-118 104-162 (325)
360 PRK15454 ethanol dehydrogenase 49.6 1.5E+02 0.0033 24.6 8.7 63 18-85 50-125 (395)
361 PRK02290 3-dehydroquinate synt 49.6 1.5E+02 0.0031 24.4 9.8 70 64-135 89-160 (344)
362 PRK12726 flagellar biosynthesi 49.4 1.6E+02 0.0034 24.8 10.8 119 17-135 234-367 (407)
363 PRK13398 3-deoxy-7-phosphohept 49.2 1.3E+02 0.0028 23.6 8.0 86 31-117 124-229 (266)
364 TIGR03499 FlhF flagellar biosy 49.1 1E+02 0.0022 24.2 7.1 53 18-71 225-280 (282)
365 COG3010 NanE Putative N-acetyl 49.0 1.2E+02 0.0025 23.1 7.6 71 42-117 80-151 (229)
366 TIGR00512 salvage_mtnA S-methy 48.8 1.4E+02 0.003 24.3 7.9 82 16-100 179-269 (331)
367 PRK05720 mtnA methylthioribose 48.6 1.5E+02 0.0032 24.3 8.0 81 16-99 179-268 (344)
368 cd08170 GlyDH Glycerol dehydro 48.5 1.5E+02 0.0031 24.1 8.8 75 18-97 23-108 (351)
369 cd03812 GT1_CapH_like This fam 48.5 1.3E+02 0.0028 23.5 10.8 109 17-138 223-333 (358)
370 PRK05282 (alpha)-aspartyl dipe 48.3 1.2E+02 0.0027 23.2 7.2 62 17-86 31-98 (233)
371 PRK13170 hisH imidazole glycer 48.2 84 0.0018 23.2 6.2 44 18-69 1-44 (196)
372 PRK14974 cell division protein 47.8 1.5E+02 0.0033 24.1 11.2 116 17-134 168-303 (336)
373 TIGR01304 IMP_DH_rel_2 IMP deh 47.8 1.6E+02 0.0035 24.4 11.0 65 49-117 143-214 (369)
374 PRK06106 nicotinate-nucleotide 47.7 1.4E+02 0.0031 23.7 9.5 90 20-116 167-263 (281)
375 PRK14335 (dimethylallyl)adenos 47.6 1.7E+02 0.0038 24.7 9.0 98 23-134 10-115 (455)
376 PTZ00314 inosine-5'-monophosph 47.6 90 0.0019 26.9 7.0 56 61-117 251-308 (495)
377 PRK14949 DNA polymerase III su 47.6 69 0.0015 29.9 6.4 73 62-136 118-193 (944)
378 PF00490 ALAD: Delta-aminolevu 47.4 22 0.00049 28.6 3.1 71 41-115 221-292 (324)
379 PF06283 ThuA: Trehalose utili 47.2 79 0.0017 23.6 6.0 74 19-97 1-88 (217)
380 PRK04302 triosephosphate isome 47.1 1.2E+02 0.0026 22.8 13.4 79 37-118 110-201 (223)
381 PRK04338 N(2),N(2)-dimethylgua 47.0 1.7E+02 0.0036 24.3 9.6 77 18-101 82-161 (382)
382 cd00532 MGS-like MGS-like doma 46.9 83 0.0018 20.8 5.5 27 22-48 6-32 (112)
383 PRK00811 spermidine synthase; 46.8 1.4E+02 0.0031 23.5 10.4 56 17-75 100-162 (283)
384 cd05844 GT1_like_7 Glycosyltra 46.8 1.4E+02 0.0031 23.5 12.7 109 17-136 219-336 (367)
385 PRK05848 nicotinate-nucleotide 46.8 1.1E+02 0.0023 24.3 6.7 37 97-133 187-223 (273)
386 PRK14178 bifunctional 5,10-met 46.6 64 0.0014 25.6 5.5 55 16-74 151-206 (279)
387 PLN02727 NAD kinase 46.5 2.6E+02 0.0056 26.4 10.7 103 17-138 678-801 (986)
388 PRK13695 putative NTPase; Prov 46.3 1.1E+02 0.0023 21.9 8.1 71 62-133 95-171 (174)
389 PRK02083 imidazole glycerol ph 46.0 89 0.0019 24.0 6.3 71 47-119 29-103 (253)
390 cd08174 G1PDH-like Glycerol-1- 46.0 1.6E+02 0.0034 23.7 9.0 75 18-97 26-106 (331)
391 cd01424 MGS_CPS_II Methylglyox 45.8 84 0.0018 20.6 8.9 27 22-48 7-33 (110)
392 PRK06371 translation initiatio 45.8 1.6E+02 0.0034 24.1 7.7 80 16-98 169-257 (329)
393 TIGR00308 TRM1 tRNA(guanine-26 45.7 1.7E+02 0.0038 24.2 9.5 80 18-102 70-151 (374)
394 PRK14183 bifunctional 5,10-met 45.7 51 0.0011 26.1 4.8 58 16-76 156-213 (281)
395 KOG1465 Translation initiation 45.6 1.2E+02 0.0026 24.5 6.8 82 17-98 188-272 (353)
396 PRK15128 23S rRNA m(5)C1962 me 45.4 1.6E+02 0.0034 24.6 7.9 54 18-71 244-301 (396)
397 PF09456 RcsC: RcsC Alpha-Beta 45.2 85 0.0018 20.4 5.1 90 20-133 2-91 (92)
398 KOG3040 Predicted sugar phosph 45.2 45 0.00098 25.4 4.2 64 16-79 38-105 (262)
399 COG0135 TrpF Phosphoribosylant 45.2 1.1E+02 0.0024 23.1 6.4 50 61-113 120-176 (208)
400 PRK07455 keto-hydroxyglutarate 45.0 1.2E+02 0.0027 22.2 7.8 64 47-117 112-178 (187)
401 PRK13125 trpA tryptophan synth 44.9 1.4E+02 0.003 22.9 10.4 89 29-120 117-215 (244)
402 cd08176 LPO Lactadehyde:propan 44.8 1.7E+02 0.0038 23.9 10.2 63 18-85 29-104 (377)
403 PRK01130 N-acetylmannosamine-6 44.8 1.3E+02 0.0028 22.5 8.0 54 61-116 86-143 (221)
404 PRK04128 1-(5-phosphoribosyl)- 44.5 1.4E+02 0.003 22.8 7.0 65 49-118 144-210 (228)
405 COG0190 FolD 5,10-methylene-te 44.5 51 0.0011 26.1 4.6 59 15-76 154-212 (283)
406 TIGR00735 hisF imidazoleglycer 44.5 1.4E+02 0.0031 22.9 8.7 71 48-119 30-103 (254)
407 cd00956 Transaldolase_FSA Tran 44.3 1.4E+02 0.0029 22.5 7.9 80 36-118 96-184 (211)
408 PRK14328 (dimethylallyl)adenos 44.2 1.9E+02 0.0042 24.3 8.7 102 21-135 9-120 (439)
409 TIGR01302 IMP_dehydrog inosine 44.0 2E+02 0.0043 24.4 11.1 99 17-118 236-355 (450)
410 smart00052 EAL Putative diguan 44.0 1.3E+02 0.0028 22.2 7.8 89 32-123 137-239 (241)
411 COG0157 NadC Nicotinate-nucleo 44.0 1.6E+02 0.0035 23.4 7.2 54 79-133 175-229 (280)
412 PRK11829 biofilm formation reg 43.9 2.3E+02 0.0049 25.0 10.8 99 29-130 540-652 (660)
413 PRK13397 3-deoxy-7-phosphohept 43.8 1.4E+02 0.0029 23.4 6.8 67 50-117 138-217 (250)
414 cd04740 DHOD_1B_like Dihydroor 43.7 91 0.002 24.5 6.1 58 79-136 220-283 (296)
415 cd03807 GT1_WbnK_like This fam 43.7 1.5E+02 0.0032 22.8 10.7 64 64-136 269-332 (365)
416 COG0113 HemB Delta-aminolevuli 43.6 95 0.0021 25.0 5.9 69 42-114 225-294 (330)
417 cd08194 Fe-ADH6 Iron-containin 43.4 1.8E+02 0.004 23.8 9.9 63 18-85 24-99 (375)
418 PRK01033 imidazole glycerol ph 43.3 96 0.0021 24.0 6.1 72 47-119 29-103 (258)
419 COG0061 nadF NAD kinase [Coenz 43.2 1.6E+02 0.0035 23.1 8.7 89 29-136 17-111 (281)
420 PLN02589 caffeoyl-CoA O-methyl 43.1 1.6E+02 0.0034 22.9 10.4 58 15-72 102-165 (247)
421 PRK08857 para-aminobenzoate sy 43.1 43 0.00092 24.6 3.9 73 20-97 2-79 (193)
422 cd08551 Fe-ADH iron-containing 43.0 1.8E+02 0.004 23.7 9.4 63 18-85 24-99 (370)
423 COG2873 MET17 O-acetylhomoseri 42.9 1.7E+02 0.0036 24.5 7.4 82 31-116 116-202 (426)
424 PF04309 G3P_antiterm: Glycero 42.8 27 0.00059 25.6 2.7 61 50-116 106-166 (175)
425 PRK14190 bifunctional 5,10-met 42.7 89 0.0019 24.8 5.8 56 16-75 157-213 (284)
426 PRK14723 flhF flagellar biosyn 42.6 2.7E+02 0.006 25.6 10.4 53 18-71 216-271 (767)
427 PRK14188 bifunctional 5,10-met 42.5 67 0.0015 25.7 5.1 54 16-73 157-211 (296)
428 PRK07998 gatY putative fructos 42.5 1.2E+02 0.0025 24.2 6.4 68 47-117 152-227 (283)
429 cd08182 HEPD Hydroxyethylphosp 42.4 1.9E+02 0.0041 23.6 9.0 63 18-85 24-96 (367)
430 TIGR03590 PseG pseudaminic aci 42.4 1.6E+02 0.0035 22.9 7.3 51 17-72 31-89 (279)
431 PRK13146 hisH imidazole glycer 42.3 1.1E+02 0.0024 22.8 6.1 44 18-69 2-47 (209)
432 PRK14956 DNA polymerase III su 42.2 1.1E+02 0.0024 26.3 6.6 74 62-136 120-195 (484)
433 PF13788 DUF4180: Domain of un 42.2 69 0.0015 21.7 4.4 39 18-56 70-112 (113)
434 PLN02316 synthase/transferase 42.0 3.2E+02 0.0069 26.2 11.6 113 17-136 869-998 (1036)
435 cd01568 QPRTase_NadC Quinolina 41.9 1.4E+02 0.0029 23.5 6.7 51 82-133 171-222 (269)
436 COG1184 GCD2 Translation initi 41.9 1.8E+02 0.004 23.3 8.5 78 16-98 144-229 (301)
437 cd08181 PPD-like 1,3-propanedi 41.8 1.9E+02 0.0041 23.5 10.3 63 18-85 26-102 (357)
438 PRK02645 ppnK inorganic polyph 41.8 1.8E+02 0.0039 23.2 9.0 93 29-139 20-118 (305)
439 PRK14176 bifunctional 5,10-met 41.8 67 0.0015 25.6 5.0 58 16-76 163-220 (287)
440 cd03799 GT1_amsK_like This is 41.8 1.7E+02 0.0036 22.8 11.2 109 17-136 210-327 (355)
441 TIGR01949 AroFGH_arch predicte 41.6 1.6E+02 0.0035 22.7 7.5 74 61-138 167-251 (258)
442 PRK10481 hypothetical protein; 41.6 1.6E+02 0.0034 22.5 8.7 74 18-94 130-210 (224)
443 cd02801 DUS_like_FMN Dihydrour 41.5 1.5E+02 0.0032 22.1 7.4 57 61-117 149-211 (231)
444 PRK12656 fructose-6-phosphate 41.2 1.6E+02 0.0035 22.5 8.2 78 36-116 100-186 (222)
445 PRK14175 bifunctional 5,10-met 41.1 1.3E+02 0.0027 24.0 6.4 56 16-75 157-213 (286)
446 PRK05286 dihydroorotate dehydr 41.0 1.7E+02 0.0036 23.8 7.4 56 80-135 277-341 (344)
447 PRK14177 bifunctional 5,10-met 40.8 60 0.0013 25.8 4.5 58 16-76 158-215 (284)
448 PRK14171 bifunctional 5,10-met 40.8 59 0.0013 25.9 4.5 58 16-76 158-215 (288)
449 PRK14166 bifunctional 5,10-met 40.7 64 0.0014 25.6 4.7 58 16-76 156-213 (282)
450 PRK14180 bifunctional 5,10-met 40.5 65 0.0014 25.6 4.7 58 16-76 157-214 (282)
451 PRK14169 bifunctional 5,10-met 40.4 64 0.0014 25.6 4.7 57 16-76 155-212 (282)
452 PLN02516 methylenetetrahydrofo 40.4 69 0.0015 25.7 4.9 57 16-75 166-222 (299)
453 PRK14182 bifunctional 5,10-met 40.4 64 0.0014 25.6 4.7 58 16-76 156-213 (282)
454 TIGR00434 cysH phosophoadenyly 40.4 1.5E+02 0.0033 22.0 8.2 69 31-99 3-75 (212)
455 cd01572 QPRTase Quinolinate ph 40.3 1.3E+02 0.0028 23.6 6.4 42 91-133 182-223 (268)
456 cd08171 GlyDH-like2 Glycerol d 40.3 2E+02 0.0043 23.3 8.9 75 18-97 23-109 (345)
457 PRK09522 bifunctional glutamin 40.0 67 0.0014 28.0 5.1 52 18-71 2-56 (531)
458 COG2109 BtuR ATP:corrinoid ade 40.0 1.6E+02 0.0034 22.1 7.3 49 61-109 120-173 (198)
459 PF00919 UPF0004: Uncharacteri 39.8 1.1E+02 0.0023 20.0 5.3 36 24-72 10-45 (98)
460 PRK01372 ddl D-alanine--D-alan 39.8 92 0.002 24.4 5.6 40 29-70 24-63 (304)
461 COG3967 DltE Short-chain dehyd 39.7 1.7E+02 0.0038 22.4 7.7 75 19-95 7-83 (245)
462 PF13941 MutL: MutL protein 39.6 2.4E+02 0.0053 24.1 13.0 116 17-134 76-207 (457)
463 PRK05772 translation initiatio 39.5 2.1E+02 0.0045 23.7 7.6 82 15-99 199-289 (363)
464 COG0107 HisF Imidazoleglycerol 39.4 97 0.0021 24.0 5.2 92 41-132 141-248 (256)
465 PRK10415 tRNA-dihydrouridine s 39.3 2E+02 0.0044 23.1 9.7 57 61-117 160-222 (321)
466 PF02887 PK_C: Pyruvate kinase 39.1 85 0.0018 20.9 4.6 66 64-135 17-86 (117)
467 PLN02591 tryptophan synthase 39.0 1.8E+02 0.004 22.5 11.6 99 20-120 110-219 (250)
468 PRK14172 bifunctional 5,10-met 39.0 70 0.0015 25.3 4.7 58 16-76 157-214 (278)
469 PRK12595 bifunctional 3-deoxy- 38.8 1.6E+02 0.0035 24.2 6.9 66 51-117 242-320 (360)
470 cd02812 PcrB_like PcrB_like pr 38.7 1.7E+02 0.0037 22.3 6.6 72 49-121 133-206 (219)
471 cd05014 SIS_Kpsf KpsF-like pro 38.6 1.2E+02 0.0025 20.2 6.1 89 25-121 10-100 (128)
472 TIGR00078 nadC nicotinate-nucl 38.6 1.4E+02 0.0031 23.4 6.3 41 92-133 179-219 (265)
473 TIGR00708 cobA cob(I)alamin ad 38.5 1.6E+02 0.0034 21.6 6.5 48 61-108 95-147 (173)
474 cd03794 GT1_wbuB_like This fam 38.4 1.9E+02 0.0041 22.4 8.7 66 64-135 295-364 (394)
475 PRK06731 flhF flagellar biosyn 38.4 2E+02 0.0042 22.7 10.3 56 17-72 103-163 (270)
476 PRK14186 bifunctional 5,10-met 38.3 72 0.0016 25.6 4.7 58 16-76 157-214 (297)
477 COG0673 MviM Predicted dehydro 38.2 2E+02 0.0044 22.7 10.8 107 17-136 3-117 (342)
478 COG1922 WecG Teichoic acid bio 38.1 1.9E+02 0.0042 22.6 9.6 60 17-78 108-176 (253)
479 PF10237 N6-adenineMlase: Prob 38.1 1.4E+02 0.003 21.6 5.7 70 47-117 70-143 (162)
480 PRK14607 bifunctional glutamin 38.0 69 0.0015 27.9 4.9 74 19-96 1-79 (534)
481 PRK06444 prephenate dehydrogen 38.0 89 0.0019 23.3 4.9 54 18-75 1-62 (197)
482 PRK09189 uroporphyrinogen-III 37.9 1.8E+02 0.0038 22.0 9.7 102 19-132 2-113 (240)
483 PRK12655 fructose-6-phosphate 37.9 1.8E+02 0.0039 22.1 7.8 79 35-116 97-184 (220)
484 cd00578 L-fuc_L-ara-isomerases 37.9 2.1E+02 0.0045 24.2 7.7 70 28-100 23-98 (452)
485 PRK14173 bifunctional 5,10-met 37.8 77 0.0017 25.2 4.7 58 16-76 154-211 (287)
486 PRK14099 glycogen synthase; Pr 37.7 2.6E+02 0.0056 23.9 10.1 110 18-133 325-441 (485)
487 COG0621 MiaB 2-methylthioadeni 37.7 2.6E+02 0.0056 23.8 8.6 101 23-136 12-117 (437)
488 cd03795 GT1_like_4 This family 37.6 2E+02 0.0042 22.4 12.6 109 17-136 218-332 (357)
489 PRK14114 1-(5-phosphoribosyl)- 37.6 1.9E+02 0.0041 22.3 7.4 67 50-118 146-222 (241)
490 PRK14187 bifunctional 5,10-met 37.6 80 0.0017 25.2 4.8 58 16-76 159-216 (294)
491 TIGR00875 fsa_talC_mipB fructo 37.6 1.8E+02 0.0039 22.0 7.8 80 35-118 95-184 (213)
492 PRK14325 (dimethylallyl)adenos 37.6 2.5E+02 0.0054 23.6 10.0 98 23-134 13-119 (444)
493 cd00381 IMPDH IMPDH: The catal 37.4 2.2E+02 0.0048 23.0 11.2 99 17-118 106-225 (325)
494 PRK10446 ribosomal protein S6 37.2 1.1E+02 0.0024 24.1 5.7 31 18-48 1-33 (300)
495 TIGR00095 RNA methyltransferas 37.2 1.7E+02 0.0036 21.5 10.5 67 19-85 74-143 (189)
496 TIGR01574 miaB-methiolase tRNA 37.2 2.5E+02 0.0055 23.6 8.6 99 23-135 9-117 (438)
497 PF07652 Flavi_DEAD: Flaviviru 37.0 1.5E+02 0.0033 21.1 7.5 83 16-99 32-135 (148)
498 TIGR01815 TrpE-clade3 anthrani 37.0 83 0.0018 28.5 5.3 78 16-97 515-595 (717)
499 KOG3111 D-ribulose-5-phosphate 36.9 1.8E+02 0.004 21.9 7.6 102 31-132 102-215 (224)
500 cd01573 modD_like ModD; Quinol 36.9 1.4E+02 0.003 23.5 6.1 52 81-134 173-225 (272)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.92 E-value=2.5e-23 Score=158.47 Aligned_cols=119 Identities=29% Similarity=0.502 Sum_probs=111.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc--cCCCCEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL--EMDLPVIM 95 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~--~~~~~iIi 95 (184)
++|+||||++..++.|..+|+..||++..+.++.++++.+. .. ||+|++|+.||+++|++++++++. ....|||+
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--~~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAR--EQ-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--cC-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 47999999999999999999999999999999999999987 55 999999999999999999999983 36789999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKP 139 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~ 139 (184)
+|+..+......++++||+||++||+++.+|..+++.++++...
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 99999999999999999999999999999999999999987653
No 2
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.86 E-value=1.3e-21 Score=140.89 Aligned_cols=147 Identities=22% Similarity=0.287 Sum_probs=120.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhc-ccCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG-LEMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~-~~~~~~iIi 95 (184)
..-|.|||||...++.+..+|++.||.+..+.++++++.... ...|-++++|+.||+++|.++.+.+. ..+..|||+
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~--~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIf 81 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP--LDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIF 81 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc--CCCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEEE
Confidence 446999999999999999999999999999999999999854 45689999999999999999999995 457899999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCCCCCCCccccCCcccccCCccchhH
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFEESDDSYSVNQGNWRTSNRRKDEEE 165 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (184)
+|..++-....++++.||.|||.||++...|.+++..++...................+..+++++++-.
T Consensus 82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~~~~~~~~l~tLT~RERqVl 151 (202)
T COG4566 82 LTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEADRQAAIRARLATLTPRERQVL 151 (202)
T ss_pred EeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999999999999999999999887644332222222223334444555544443
No 3
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.86 E-value=4.8e-21 Score=156.80 Aligned_cols=116 Identities=29% Similarity=0.444 Sum_probs=106.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc--CCe-EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKC--LYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPV 93 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~--~~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~i 93 (184)
.+|+||||++..+++|+.++.+. |++ |..+.+|.+|++.+. +..|||||.|+.||+++|+++++.++. .|.+.+
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~--e~~pDiviTDI~MP~mdGLdLI~~ike~~p~~~~ 79 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQ--ETQPDIVITDINMPGMDGLDLIKAIKEQSPDTEF 79 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHH--hcCCCEEEEecCCCCCcHHHHHHHHHHhCCCceE
Confidence 58999999999999999999764 765 569999999999998 677999999999999999999999964 578999
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
||+|+..+.+++.+|++.|+.|||+||++..+|..++.++..
T Consensus 80 IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~ 121 (475)
T COG4753 80 IILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIG 121 (475)
T ss_pred EEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888865
No 4
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.86 E-value=1.4e-21 Score=143.29 Aligned_cols=121 Identities=21% Similarity=0.421 Sum_probs=107.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-CCe-EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKC-LYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~-~~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iI 94 (184)
++||||||++..++.-+.+++.. ||. |..+.+.+++..++. ...||+|++|+.||+++|++++..++.. ..+-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~--~~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIE--EFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHH--hhCCCEEEEeeccCCCccHHHHHHHHhcCCCCCEE
Confidence 57999999999999999999986 665 568999999999998 4458999999999999999999999754 577899
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
++|+..+.+.+.+++..|+.||+.||+..+.|.+++....+....+
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l 124 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHAL 124 (224)
T ss_pred EEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876654433
No 5
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.84 E-value=6.2e-20 Score=150.49 Aligned_cols=119 Identities=35% Similarity=0.568 Sum_probs=111.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhc-ccCCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG-LEMDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~-~~~~~~iIi~ 96 (184)
.+|+||||++..+..+...|+..||.+..+.++.++++.+.. ..+|+|++|+.||+++|+++++.++ ..+.+|||++
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~--~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~ 82 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSE--SPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVM 82 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEE
Confidence 469999999999999999999999999999999999999983 3699999999999999999999995 4579999999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
|.+.+.+.+..|++.||.||+.||++.+.|..+++.++...+
T Consensus 83 Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 83 TGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred eCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988644
No 6
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.84 E-value=1.4e-19 Score=122.67 Aligned_cols=110 Identities=37% Similarity=0.618 Sum_probs=102.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCC-eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEEEE
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLY-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIMMS 97 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~-~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi~~ 97 (184)
|+||||++..+..+...|+..|+ .+..+.++.++++.+. +..||++|+|+.+++.+|.+++++++.. +.+|+|+++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~--~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLK--KHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH--HSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhc--ccCceEEEEEeeeccccccccccccccccccccEEEec
Confidence 78999999999999999998899 9999999999999997 4559999999999999999999999644 689999999
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHH
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~ 131 (184)
...+......++++|+++|+.||++.++|.++++
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9888899999999999999999999999998874
No 7
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.83 E-value=5.5e-19 Score=133.25 Aligned_cols=125 Identities=30% Similarity=0.405 Sum_probs=113.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC-Ce-EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhc-ccCCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCL-YE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG-LEMDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~-~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~-~~~~~~iI 94 (184)
++|+|+||++..+..++.+|...+ ++ +..+.+++++++.+. ...||++++|+.||+++|+++++.++ ..++++|+
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~--~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vv 78 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAR--ELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVV 78 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhh--hcCCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEE
Confidence 479999999999999999998764 66 557778999999876 56799999999999999999999996 55788999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCCCCC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFEESD 144 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~~~~ 144 (184)
+++...+..+...++++||++|++|..+.++|..+++.+..+..++++..
T Consensus 79 vlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~ 128 (211)
T COG2197 79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDI 128 (211)
T ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeCHHH
Confidence 99999999999999999999999999999999999999999998877643
No 8
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.79 E-value=1.2e-17 Score=127.15 Aligned_cols=123 Identities=20% Similarity=0.308 Sum_probs=108.6
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhc-CC-eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCC
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKC-LY-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMD 90 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~-~~-~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~ 90 (184)
+|..++|+|+||++..+..+...|... ++ .+..+.++.++++.+. ...||++++|+.||+.+|+++++.++. .++
T Consensus 1 ~~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~--~~~pdlvllD~~mp~~~gle~~~~l~~~~~~ 78 (225)
T PRK10046 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE--RFKPGLILLDNYLPDGRGINLLHELVQAHYP 78 (225)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH--hcCCCEEEEeCCCCCCcHHHHHHHHHhcCCC
Confidence 355789999999999999999999864 67 4678999999999987 566999999999999999999999964 467
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
.+||+++...+.....++++.||++|+.||++.++|..+++.+..+..
T Consensus 79 ~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 126 (225)
T PRK10046 79 GDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 (225)
T ss_pred CCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHH
Confidence 899999998888999999999999999999999999999988765433
No 9
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.77 E-value=3.4e-18 Score=130.79 Aligned_cols=117 Identities=27% Similarity=0.437 Sum_probs=106.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~ 96 (184)
++|+||||+......|..+|++.|..+..|++..++++.+. ...||++|+|+.||+++|++|+++++. .+.+|||++
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le--~~kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLE--VFKPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHH--hcCCCEEEEEeecCCccHHHHHHHHHHhhccCcEEEE
Confidence 47999999999999999999999999999999999999998 567999999999999999999999964 478999999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
|++ .++..++++..+.||+.||++.+.|.+++.++.+...
T Consensus 79 ssh--~eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve 118 (361)
T COG3947 79 SSH--AEYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVE 118 (361)
T ss_pred ecc--hhhhhhhcccchHhhccCCCCHHHHHHHHHHHhcccc
Confidence 965 6888899999999999999999999999999886543
No 10
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.77 E-value=7.1e-17 Score=121.92 Aligned_cols=118 Identities=25% Similarity=0.342 Sum_probs=107.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
.+|+++||++..++.+...|...|+.+..+.++.+++..+. ...||++|+|+.||+.+|+++++.++..+..|+|+++
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--~~~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA--TRKPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 47999999999999999999998999999999999988776 4569999999999999999999999876789999999
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
+..+......+++.|+++|+.||++.++|...++.+.++.
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 8888888999999999999999999999999999887654
No 11
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.76 E-value=1.9e-17 Score=130.12 Aligned_cols=120 Identities=34% Similarity=0.487 Sum_probs=108.0
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cC---
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EM--- 89 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~--- 89 (184)
....++|++|||.+..+..++..|+..||.+..+.+++++++... ...||++++|++||+++|++++++++. .+
T Consensus 11 ~~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~--~~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~ 88 (360)
T COG3437 11 PDEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQ--EEPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTR 88 (360)
T ss_pred CcccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhc--ccCCceEEeeccCCCccHHHHHHHHHhcCCccc
Confidence 334678999999999999999999999999999999999999876 445999999999999999999999975 44
Q ss_pred CCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 90 DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 90 ~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
.+|++++|...+.+...+++..|+++|+.||++..+|...++..++
T Consensus 89 ~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q 134 (360)
T COG3437 89 RIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQ 134 (360)
T ss_pred ccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999888865543
No 12
>PRK11173 two-component response regulator; Provisional
Probab=99.75 E-value=1.1e-16 Score=122.23 Aligned_cols=118 Identities=19% Similarity=0.374 Sum_probs=108.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
.+|+++||++..+..+...|+..|+.+..+.++.+++..+. ...||++|+|+.||+.+|+++++.++..+..|+|+++
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--~~~~dlvild~~l~~~~g~~~~~~lr~~~~~pii~lt 81 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS--ENDINLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--hCCCCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 47999999999999999999999999999999999999886 4569999999999999999999999766789999999
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
+..+......+++.|+++|+.||++..+|...++.++++.
T Consensus 82 ~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 8888888889999999999999999999999998887753
No 13
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.75 E-value=7.9e-17 Score=121.72 Aligned_cols=124 Identities=20% Similarity=0.258 Sum_probs=109.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC-e-EEEECCHHHHHHHHHhcCCCccEEEEeCCCCC---CCHHHHHHHhcc-cCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY-E-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPD---MDGFKLHEQVGL-EMD 90 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~-~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~---~~g~~l~~~l~~-~~~ 90 (184)
+++|+|+||++..+..++..|...++ . +..+.++.++++.+. ...||++|+|+.+++ .+|++++++++. .+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~--~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLP--KLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH--hCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 47899999999999999999987654 3 667899999999886 456999999999999 599999999964 478
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCCC
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFEE 142 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~~ 142 (184)
+|||+++...+......+++.|+++|+.||.+.++|..+++.+..+..++++
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~~~ 132 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPE 132 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCeecCH
Confidence 8999999988888889999999999999999999999999999998877654
No 14
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.75 E-value=1.4e-16 Score=120.31 Aligned_cols=118 Identities=28% Similarity=0.412 Sum_probs=108.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~ 96 (184)
|+|+++||++..+..+...|...|+.+..+.++.+++..+. ...||++++|+.+|+.+|+++++.++. .+.+|+|++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~--~~~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN--EHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--hCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 57999999999999999999999999999999999999876 456999999999999999999999964 468999999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
+...+......+++.|+++|+.||++..+|...+..+.++.
T Consensus 79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 99888888999999999999999999999999999887754
No 15
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.75 E-value=2.2e-16 Score=109.49 Aligned_cols=118 Identities=36% Similarity=0.609 Sum_probs=100.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHH-HHHHHHHhcCC-CccEEEEeCCCCCCCHHHHHHHhccc-CCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAE-IALDMLRMSKN-GYDIVISDVHMPDMDGFKLHEQVGLE-MDLP 92 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~-~~~~~l~~~~~-~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~ 92 (184)
...+|+++||++..+..++..|...|+.+..+.++. ++++.+. .. .||++++|+.||+++|+++++.++.. ..+|
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~--~~~~~dlii~D~~mp~~~G~~~~~~l~~~~~~~p 81 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLR--ELPQPDLILLDINMPGMDGIELLRRLRARGPNIP 81 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHH--hCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCC
Confidence 467899999999999999999999999999999995 9999987 44 49999999999999999999999765 6778
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHH-HHHHHHHHHc
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKE-LRNIWQHVAQ 135 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~-l~~~l~~~~~ 135 (184)
++++++.........++..|+++|+.||+...+ +...+.....
T Consensus 82 vv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 82 VILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 877777766665677899999999999977666 6777665443
No 16
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.75 E-value=9.5e-17 Score=120.88 Aligned_cols=119 Identities=23% Similarity=0.441 Sum_probs=108.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
|+|+++||++..+..+...|...|+.+..+.+..+++..+. ...||++++|..+++.+|+++++.++..+..|+|+++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~--~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL--KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--cCCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 57999999999999999999988999999999999998876 4669999999999999999999999766688999999
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
...+......++..|+++|+.||++.++|...++.+.++..
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~ 119 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcccc
Confidence 88888889999999999999999999999999998877643
No 17
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.74 E-value=2e-16 Score=119.17 Aligned_cols=118 Identities=20% Similarity=0.394 Sum_probs=107.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMM 96 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~ 96 (184)
.++|+++||++..+..+...|...|+.+..+.++.+++..+. ...||++++|..+|+.+|+++++.++..+..|+|++
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l 79 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQ--NQHVDLILLDINLPGEDGLMLTRELRSRSTVGIILV 79 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 358999999999999999999999999999999999998876 456999999999999999999999976678899999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+...+......+++.||++|+.||++..+|...+..+.++
T Consensus 80 ~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r 119 (221)
T PRK10766 80 TGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWR 119 (221)
T ss_pred ECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhh
Confidence 9888888888999999999999999999999999887765
No 18
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.74 E-value=2.2e-16 Score=119.44 Aligned_cols=118 Identities=22% Similarity=0.432 Sum_probs=107.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi~ 96 (184)
|+|++++|++..+..+...|...|+.+..+.++.++++.+. ...||++|+|+.+++.+|+++++.++.. +.+|+|++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--~~~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM--TGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--hCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 57999999999999999999988999999999999998876 4569999999999999999999999653 68899999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
+...+......+++.|+++|+.||++.++|...++.+.++.
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence 99888899999999999999999999999999999887653
No 19
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.74 E-value=3.8e-16 Score=117.31 Aligned_cols=119 Identities=27% Similarity=0.479 Sum_probs=107.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~ 96 (184)
|+|+++||++..+..+...|...|+.+..+.++.+++..+. ...||++++|+.+++.+|+++++.++. .+..|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~~~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLE--SGHYSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH--hCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 57999999999999999999998999989999999998876 456999999999999999999999964 367899999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
+...+......+++.|+++|+.||++.++|...++.+.++..
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 120 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRHQ 120 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhhc
Confidence 988888889999999999999999999999999998876543
No 20
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.74 E-value=1.1e-16 Score=130.57 Aligned_cols=122 Identities=30% Similarity=0.435 Sum_probs=112.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLP 92 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~ 92 (184)
...+|+++||+...+..+..+|...|+.+..+.++++++..+. +..||+||+|+.||+.||++++++++.. ..+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~--e~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLA--ELPPDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHh--cCCCcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 3568999999999999999999999999999999999999987 5579999999999999999999999643 4789
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCC
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKP 139 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~ 139 (184)
+|++++..+.....+||+.|++||+.||+...++...+...+++.++
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999988888887654
No 21
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.73 E-value=5.3e-16 Score=118.79 Aligned_cols=117 Identities=22% Similarity=0.371 Sum_probs=105.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEc
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSV 98 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~ 98 (184)
+|+++||++..+..+...|...|+.+..+.++.++++.+. ...||++|+|..+|+.+|+++++.++....+|+++++.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~~~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt~ 80 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLA--SETVDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISG 80 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEEC
Confidence 7999999999999999999999999999999999998876 45699999999999999999999997667889999987
Q ss_pred cC-ChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 99 DG-CTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 99 ~~-~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
.. +......+++.||++|+.||++.++|...++.++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 43 5566778999999999999999999999999887764
No 22
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.73 E-value=4.2e-16 Score=118.07 Aligned_cols=117 Identities=25% Similarity=0.421 Sum_probs=106.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~iI 94 (184)
.+|+++||++..+..+...|...|+.+..+.++.+++..+. ...||++|+|..+++.+|+++++.++.. +.+|+|
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--~~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN--EPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--ccCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 57999999999999999999988999999999999999876 4569999999999999999999999643 578999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
++++..+......++++|+++|+.||++..+|...+..+.++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999888888999999999999999999999999999988775
No 23
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.73 E-value=4.2e-16 Score=118.61 Aligned_cols=121 Identities=36% Similarity=0.561 Sum_probs=109.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi 95 (184)
+.++|+++||++..+..+...|...|+.+..+.+..+++..+. ...||++++|+.+++.+|+++++.++..+++|+|+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~--~~~~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~ 82 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFR--KEQPDLVILDVMMPKLDGYGVCQEIRKESDVPIIM 82 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEE
Confidence 3578999999999999999999988999988999999998876 45699999999999999999999997667899999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
++...+......+++.|+++|+.||++.++|...++.+.++..
T Consensus 83 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~~ 125 (240)
T CHL00148 83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRTN 125 (240)
T ss_pred EECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9988888888899999999999999999999999998876643
No 24
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.73 E-value=4.1e-16 Score=116.96 Aligned_cols=117 Identities=23% Similarity=0.382 Sum_probs=106.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~ 96 (184)
|+|+++||++..+..+...|...|+.+..+.++.+++..+. ...||++|+|..+++.+|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY--SAPYDAVILDLTLPGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--hCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 57999999999999999999988999989999999998876 456999999999999999999999964 467899999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+...+......+++.|+++|+.||++.++|..++..+.++
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhc
Confidence 9888888889999999999999999999999999988764
No 25
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.73 E-value=5.1e-16 Score=118.62 Aligned_cols=118 Identities=20% Similarity=0.314 Sum_probs=106.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
.+|+++||++..+..+...|...|+.+..+.++.+++..+. ...||++|+|+.||+.+|+++++.++.....|+|+++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~--~~~~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~ 79 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATIL--REQPDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLT 79 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHh--hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 37999999999999999999999999999999999999876 4569999999999999999999999766678999998
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
..........++..|+++|+.||++..+|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 8777778889999999999999999999999999877653
No 26
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.72 E-value=5.6e-16 Score=116.54 Aligned_cols=119 Identities=27% Similarity=0.514 Sum_probs=107.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~iI 94 (184)
.+|+++||++..+..+...|...|+.+..+.+..+++..+. ...||++++|..+++.+|+++++.++.. +.+|+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii 80 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLIN--ERGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPII 80 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHH--hcCCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEE
Confidence 57999999999999999999988999989999999999886 4569999999999999999999999643 578999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
+++...+......+++.|+++|+.||++.++|...+..+.++..
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~ 124 (226)
T TIGR02154 81 MLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRIR 124 (226)
T ss_pred EEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcccc
Confidence 99988888888999999999999999999999999999887643
No 27
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.72 E-value=6.5e-16 Score=116.98 Aligned_cols=118 Identities=29% Similarity=0.471 Sum_probs=106.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
.+|+++||++..+..+...|...|+.+..+.++.+++..+. ..||++++|+.||+.+|+++++.++.....|+|+++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~---~~~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD---DSIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh---cCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 37999999999999999999988999989999999998764 259999999999999999999999755458999999
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
...+......+++.|+++|+.||++.++|...++.+.++..
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 119 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhccc
Confidence 88888888899999999999999999999999999887654
No 28
>PLN03029 type-a response regulator protein; Provisional
Probab=99.72 E-value=5.4e-16 Score=117.94 Aligned_cols=120 Identities=28% Similarity=0.560 Sum_probs=104.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcC------------------CCccEEEEeCCCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK------------------NGYDIVISDVHMPDMD 77 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~------------------~~~dlvilD~~l~~~~ 77 (184)
..++|++|||++..+..+...|...|+.+..+.++.++++.+.... ..+|+||+|+.||+++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 3578999999999999999999999999999999999999885211 1367999999999999
Q ss_pred HHHHHHHhccc---CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 78 GFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 78 g~~l~~~l~~~---~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
|+++++.++.. ..+|+|+++.........+++..|+++|+.||++..+|...+..+.+
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~ 147 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMK 147 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHH
Confidence 99999999643 47899999988888888899999999999999999999777665443
No 29
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.71 E-value=3.4e-16 Score=108.99 Aligned_cols=113 Identities=23% Similarity=0.393 Sum_probs=105.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEEE
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMMS 97 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~~ 97 (184)
..+|||||..+...|...+++.||.+..+++.++++...+ ...|.-.++|+.|.+++|+++++.++. .++..+|++|
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~ar--t~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAAR--TAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHh--cCCCceEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 6999999999999999999999999999999999999988 567999999999999999999999964 4789999999
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
.+.+-..++.|.+.||++|+.||.+.+.+..++..-
T Consensus 89 Gy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 89 GYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred cchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 999999999999999999999999999998877654
No 30
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.71 E-value=9.5e-16 Score=115.56 Aligned_cols=120 Identities=30% Similarity=0.406 Sum_probs=107.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi~ 96 (184)
++|+|+||++..++.+...|...|+.+..+.+..+++..+. ...||++++|+.+++.+|+++++.++.. +.+|+|++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 81 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLR--QQPPDLVILDVGLPDISGFELCRQLLAFHPALPVIFL 81 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 58999999999999999999988999988999999988876 4569999999999999999999999654 68999999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKP 139 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~ 139 (184)
+...+......++..|+++|+.||++.++|..+++.+.++...
T Consensus 82 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~ 124 (228)
T PRK11083 82 TARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVKK 124 (228)
T ss_pred EcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcccc
Confidence 9888888888999999999999999999999999988876543
No 31
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.71 E-value=1.3e-15 Score=116.20 Aligned_cols=119 Identities=27% Similarity=0.459 Sum_probs=108.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi 95 (184)
..+|+|++|++..+..+...|...|+.+..+.++.++++.+. ...||++|+|..+++.+|+++++.++.. +.+|+|+
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--~~~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ 82 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLT--RESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 458999999999999999999999999999999999998876 4669999999999999999999999644 6789999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
++...+......++..|+++|+.||++.++|...+..++++.
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 998888888889999999999999999999999999887754
No 32
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.71 E-value=1.1e-15 Score=115.53 Aligned_cols=118 Identities=23% Similarity=0.366 Sum_probs=106.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCC--CCHHHHHHHhccc-CCCCEEE
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD--MDGFKLHEQVGLE-MDLPVIM 95 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~--~~g~~l~~~l~~~-~~~~iIi 95 (184)
+|+++||++..+..+...|...|+.+..+.++.+++..+. ...||++++|+.+++ .+|+++++.++.. +.+|+|+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFR--QRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHH--hCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 6999999999999999999988999988999999999876 456999999999998 4899999999643 6789999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
++...+......++.+|+++|+.||++.++|...++.+.++..
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRAE 122 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhh
Confidence 9988888889999999999999999999999999999887654
No 33
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.71 E-value=1.2e-15 Score=113.51 Aligned_cols=121 Identities=18% Similarity=0.248 Sum_probs=108.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIM 95 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi 95 (184)
|+|+++||++..+..+...|+..|+.+. .+.++.+++..+. ...||++++|..+++.+|+++++.++.. +..|+|+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE--TLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 5799999999999999999998899886 6899999999887 4569999999999999999999999643 5778999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
+++..+......++..|+++|+.||++.++|..+++.++++..+.
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~ 123 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCccc
Confidence 998888888899999999999999999999999999998875543
No 34
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.71 E-value=7.8e-16 Score=118.12 Aligned_cols=116 Identities=19% Similarity=0.326 Sum_probs=101.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-CCe-EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKC-LYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~-~~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iI 94 (184)
++|+|+||++..++.+...|... ++. +..+.++.++++.+......||++|+|+.||+.+|+++++.++. .+.+|+|
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEE
Confidence 58999999999999999999864 665 45788899998887532355999999999999999999999964 4688999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
++++..+......++..|+++|+.||++.++|..++..+
T Consensus 82 ~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 999988889999999999999999999999999999863
No 35
>PRK09483 response regulator; Provisional
Probab=99.70 E-value=1.6e-15 Score=113.81 Aligned_cols=122 Identities=24% Similarity=0.319 Sum_probs=108.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-CCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKC-LYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~-~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iI 94 (184)
++|+|+||++..+..+...|... ++.+. .+.+..+++..+. ...||++|+|+.+++.+|+++++.++. .+.+|+|
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~--~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii 79 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCR--TNAVDVVLMDMNMPGIGGLEATRKILRYTPDVKII 79 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEE
Confidence 58999999999999999999874 77765 7889999998887 456999999999999999999999953 5678999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
+++...+......++..|+++|+.||++.++|..+++.+..+..+.+
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~~~ 126 (217)
T PRK09483 80 MLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIA 126 (217)
T ss_pred EEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccC
Confidence 99988888888999999999999999999999999999998876554
No 36
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.69 E-value=3.6e-15 Score=111.63 Aligned_cols=119 Identities=27% Similarity=0.482 Sum_probs=107.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEEEc
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMMSV 98 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~~~ 98 (184)
|+++||++..+..+...|...|+.+..+.+..+++..+. ...||++++|+.+++.+|+++++.++. .+.+|+|+++.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~ 78 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLAL--KDDYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTA 78 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEc
Confidence 589999999999999999988999999999999998876 456999999999999999999999964 46889999999
Q ss_pred cCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 99 DGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 99 ~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
..+......++..|+++|+.||++.+++...++.+.++....
T Consensus 79 ~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~ 120 (218)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSHSL 120 (218)
T ss_pred CCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccccC
Confidence 888889999999999999999999999999999988765543
No 37
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.69 E-value=2.1e-15 Score=135.06 Aligned_cols=121 Identities=25% Similarity=0.496 Sum_probs=110.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc---cCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL---EMDLP 92 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~---~~~~~ 92 (184)
.+++|+||||++..+..++..|...|+.+..+.++.++++.+. ...||+||+|+.||+++|+++++.++. .+.+|
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~--~~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~p 743 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAK--QRPFDLILMDIQMPGMDGIRACELIRQLPHNQNTP 743 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--hCCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCC
Confidence 4679999999999999999999999999999999999999987 567999999999999999999999974 35789
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
||+++..........+++.|+++|+.||++..+|...++.+.....
T Consensus 744 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 789 (919)
T PRK11107 744 IIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPGPK 789 (919)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccccc
Confidence 9999998888999999999999999999999999999998876543
No 38
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.68 E-value=2e-15 Score=135.25 Aligned_cols=119 Identities=32% Similarity=0.527 Sum_probs=109.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVI 94 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iI 94 (184)
.+++|+||||++..+..+...|+..|+.+..+.++.++++.+. ...||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~--~~~~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII 877 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS--KNHIDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVI 877 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--hCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4679999999999999999999999999999999999999987 5669999999999999999999999754 578999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
++++....+....+++.|+++|+.||++.++|...+.....+
T Consensus 878 ~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~ 919 (924)
T PRK10841 878 GVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAER 919 (924)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 999988888889999999999999999999999999887653
No 39
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.68 E-value=1.7e-15 Score=135.79 Aligned_cols=118 Identities=24% Similarity=0.399 Sum_probs=107.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-----CC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-----MD 90 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-----~~ 90 (184)
.+++|+||||++..+..+...|...|+.+..+.++.++++.+. ...||+||+|+.||+++|+++++.++.. +.
T Consensus 689 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~--~~~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~ 766 (921)
T PRK15347 689 WQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGR--QHRFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPD 766 (921)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCC
Confidence 3579999999999999999999999999999999999999987 5679999999999999999999999642 56
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
+|||++++.........+++.|+++|+.||++.++|..++..+..
T Consensus 767 ~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 767 CMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 899999998888888999999999999999999999999987654
No 40
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.68 E-value=7.6e-16 Score=135.40 Aligned_cols=121 Identities=29% Similarity=0.529 Sum_probs=109.7
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc--CCC
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE--MDL 91 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~--~~~ 91 (184)
.-.+.+||++||+...+...+.+|+..|.++..+.++.+|++.+.. ...||+||+|++||.+||++..+.+|+. .++
T Consensus 663 ~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~ 741 (786)
T KOG0519|consen 663 LLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKERWHL 741 (786)
T ss_pred cccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhcCCC
Confidence 3347799999999999999999999999999999999999999862 4569999999999999999999999754 489
Q ss_pred CEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 92 PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
|||.+|+...+....++++.|.++|+.||+..+.+...+.+.+.
T Consensus 742 pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 742 PIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred CEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 99999999989999999999999999999999999998887653
No 41
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.67 E-value=3.2e-15 Score=114.19 Aligned_cols=115 Identities=27% Similarity=0.434 Sum_probs=96.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC-Ce-EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCL-YE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~-~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi 95 (184)
++|+||||++..++.+...|...+ +. +..+.++.+++..+. ...||++|+|+.||+.+|+++++.++.....++|+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~--~~~~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii~ 79 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIH--RLKPDVVFLDIQMPRISGLELVGMLDPEHMPYIVF 79 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHhcccCCCEEEE
Confidence 689999999999999999998876 33 457889999998876 45699999999999999999999986433445677
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+++. .+...++++.|+.+|+.||++.++|..++..+...
T Consensus 80 vt~~--~~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 80 VTAF--DEYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred Eecc--HHHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 6654 46778999999999999999999999999888653
No 42
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.67 E-value=6e-15 Score=109.00 Aligned_cols=118 Identities=26% Similarity=0.312 Sum_probs=104.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-CCe-EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKC-LYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~-~~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi 95 (184)
++|+|+||++..+..+...|... ++. +..+.++.+++..+. ...||++|+|+.+++.+|+++++.++ +..|+++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~--~~~~dlvi~d~~~~~~~g~~~~~~l~--~~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP--GRGVQVCICDISMPDISGLELLSQLP--KGMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHHHHHHc--cCCCEEE
Confidence 58999999999999999999754 554 568889999999886 45699999999999999999999885 3579999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKP 139 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~ 139 (184)
++...+......++..|+++|+.||++.+++..+++.+.++...
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~ 121 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCY 121 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCee
Confidence 99988888889999999999999999999999999999887543
No 43
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.67 E-value=4.5e-15 Score=133.03 Aligned_cols=122 Identities=25% Similarity=0.348 Sum_probs=109.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iI 94 (184)
++++|+|+||++..+..+...|...|+.+..+.++.++++.+.. ...||+||+|+.||+++|+++++.++. .+++|+|
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii 758 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQN-SEPFAAALVDFDLPDYDGITLARQLAQQYPSLVLI 758 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHc-CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 36789999999999999999999999999999999999998752 345899999999999999999999964 4789999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
+++..........++..|+++|+.||++.++|...+..+..+..
T Consensus 759 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 802 (914)
T PRK11466 759 GFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQV 802 (914)
T ss_pred EEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhcc
Confidence 99998888888899999999999999999999999999887544
No 44
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.66 E-value=1.3e-14 Score=108.04 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=106.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-CCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC-LYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~-~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~i 93 (184)
+.+|+|++|++..+..+...|... ++.+. .+.++.++...+. ...||++++|..+++.+|.++++.++. .+.+|+
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~i 80 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLR--TRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV 80 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 468999999999999999999876 57664 6788888888876 456999999999999999999999964 467899
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKP 139 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~ 139 (184)
|++++..+......++..|+++|+.||++.++|..+++.++++...
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~~ 126 (210)
T PRK09935 81 LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTF 126 (210)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCce
Confidence 9999988888889999999999999999999999999998887554
No 45
>PRK14084 two-component response regulator; Provisional
Probab=99.65 E-value=1e-14 Score=112.11 Aligned_cols=115 Identities=24% Similarity=0.421 Sum_probs=98.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC-C-eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCL-Y-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~-~-~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iI 94 (184)
++|+||||++..+..+...|...+ + .+..+.++++++..+. ...||++|+|+.||+.+|+++++.++.. +..++|
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~--~~~~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI 78 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALL--INQYDIIFLDINLMDESGIELAAKIQKMKEPPAII 78 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 579999999999999999998764 4 5668899999999886 4569999999999999999999999754 455677
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
++++. .....++++.|+.+|+.||++.++|..+++.+.++
T Consensus 79 ~~t~~--~~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 79 FATAH--DQFAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred EEecC--hHHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 76654 45678899999999999999999999999988654
No 46
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.65 E-value=1.8e-14 Score=109.58 Aligned_cols=117 Identities=24% Similarity=0.430 Sum_probs=106.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEc
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSV 98 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~ 98 (184)
+|+++||++..+..+...|...|+.+..+.++.+++..+. ...||++++|..+++.+|+++++.++..+..|+++++.
T Consensus 12 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~~ 89 (240)
T PRK10710 12 RILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVR--QTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTA 89 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEEc
Confidence 7999999999999999999988999999999999999886 45699999999999999999999997667899999998
Q ss_pred cCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 99 DGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 99 ~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
..+......++..|+++|+.||++.++|...++.+.++.
T Consensus 90 ~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 90 KIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred CCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 887788889999999999999999999999998887654
No 47
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.65 E-value=1.3e-14 Score=112.66 Aligned_cols=118 Identities=26% Similarity=0.406 Sum_probs=102.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-CCeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-C--CC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC-LYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-M--DL 91 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~-~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~--~~ 91 (184)
.++|+++||++..+..+...|... ++.+ ..+.++.++++.+. ...||+|++|+.||+.+|+++++.++.. . ..
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~--~~~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIK--EQQPDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 468999999999999999999864 4554 47899999999987 4569999999999999999999999643 2 37
Q ss_pred CEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 92 PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
|+|+++..........+++.|+++|+.||++..+|...+..+..+
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 899999888888888999999999999999999999999988764
No 48
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.65 E-value=2.4e-14 Score=107.42 Aligned_cols=120 Identities=26% Similarity=0.447 Sum_probs=106.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~ 96 (184)
|+|+++|+++.....+...|...|+.+..+.++.++...+. ...||++++|..+++.+|+++++.++. .+..|+|++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQ--SEMYALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--hCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 47999999999999999999988999888999999988776 456999999999999999999999964 467899999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKP 139 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~ 139 (184)
+...+......++..|+++|+.||++.+++...+..+.++...
T Consensus 79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~ 121 (221)
T PRK15479 79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAG 121 (221)
T ss_pred ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhhcc
Confidence 9888888888999999999999999999999999988775443
No 49
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.65 E-value=6.8e-15 Score=111.33 Aligned_cols=121 Identities=12% Similarity=0.136 Sum_probs=99.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHH-HHhc-ccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLH-EQVG-LEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~-~~l~-~~~~~~iI 94 (184)
..+++++||++..+..|+..|......+..+.++.++++.+. .||+|++|+.||+.+|++++ +.++ ..+.++||
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vv 85 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKIL 85 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhCCCCcEE
Confidence 456999999999999999999854444557778888887643 38999999999999999986 5565 45789999
Q ss_pred EEEccCChHHHHHHHH--cCCCceEeCCCCHHHHHHHHHHHHcCCCCCCCC
Q 029986 95 MMSVDGCTQDVMKGVT--HGACNYLLKPIRIKELRNIWQHVAQQPKPFEES 143 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~--~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~~~ 143 (184)
+++...+ ....++. .||.+|+.|+.+.++|.++++.+..+..++++.
T Consensus 86 vlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~~~ 134 (216)
T PRK10100 86 LLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQK 134 (216)
T ss_pred EEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcccCHH
Confidence 9998755 4445555 499999999999999999999999998888754
No 50
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.64 E-value=1.3e-14 Score=121.08 Aligned_cols=120 Identities=30% Similarity=0.449 Sum_probs=108.0
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCE
Q 029986 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPV 93 (184)
Q Consensus 15 ~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~i 93 (184)
++..+|+|+||++..+..+...|...|+.+..+.++.+++..+. ...||+|++|+.||+.+|+++++.++. .+.+|+
T Consensus 2 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--~~~~dlillD~~~p~~~g~~ll~~i~~~~~~~pv 79 (457)
T PRK11361 2 TAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFA--DIHPDVVLMDIRMPEMDGIKALKEMRSHETRTPV 79 (457)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 45668999999999999999999999999999999999999886 556999999999999999999999964 467899
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
|+++...+......+++.|+++|+.||++.+++...+..+...
T Consensus 80 I~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~ 122 (457)
T PRK11361 80 ILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122 (457)
T ss_pred EEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence 9999988888999999999999999999999999988876653
No 51
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.64 E-value=7.3e-15 Score=122.03 Aligned_cols=119 Identities=29% Similarity=0.534 Sum_probs=107.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iI 94 (184)
..++|+||||++..+..+...|...|+.+..+.++.+++..+. ...||+||+|+.||+.+|+++++.++. .+.+|+|
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--~~~~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR--EQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEE
Confidence 3578999999999999999999999999999999999999876 456999999999999999999999964 4678999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+++...+......+++.|+.+|+.||++.++|...+..+..+
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred EEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999888888999999999999999999999999988876653
No 52
>PRK15115 response regulator GlrR; Provisional
Probab=99.64 E-value=1.1e-14 Score=121.28 Aligned_cols=118 Identities=30% Similarity=0.513 Sum_probs=107.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi 95 (184)
..+|+||||++..+..+...|...|+.+..+.++.+++..+. ...||+||+|+.||+.+|+++++.++. .+.+|+|+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~--~~~~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIv 82 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLN--REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVII 82 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--cCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 468999999999999999999999999999999999999886 456999999999999999999999953 46789999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+++..+......+++.|+++|+.||++.++|...+..+...
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 99988888899999999999999999999999999888764
No 53
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.64 E-value=1e-14 Score=131.45 Aligned_cols=118 Identities=23% Similarity=0.355 Sum_probs=108.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CC---CC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MD---LP 92 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~---~~ 92 (184)
+.+|+||||++..+..+...|+..|+.+..+.++.++++.+. ...||+||+|+.||+++|+++++.++.. +. +|
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~p 779 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFH--QHAFDLALLDINLPDGDGVTLLQQLRAIYGAKNEVK 779 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--CCCCCEEEECCCCCCCCHHHHHHHHHhCccccCCCe
Confidence 458999999999999999999999999999999999999987 5679999999999999999999999753 22 89
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
||+++..........++..|+++|+.||++..+|...+..+...
T Consensus 780 ii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 780 FIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999988888899999999999999999999999999988754
No 54
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.63 E-value=1.8e-14 Score=127.44 Aligned_cols=119 Identities=22% Similarity=0.389 Sum_probs=104.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CC-CC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MD-LP 92 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~-~~ 92 (184)
+++|+||||++..+..+...|+..|+.+..+.++.++++.+. ...||+||+|+.||+++|+++++.++.. +. .|
T Consensus 525 ~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~--~~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ 602 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFD--PDEYDLVLLDIQLPDMTGLDIARELRERYPREDLPP 602 (779)
T ss_pred ccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh--cCCCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCc
Confidence 578999999999999999999999999999999999999987 5669999999999999999999999643 34 47
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
+|+++.... .....+++.|+++|+.||++..+|...+..+.....
T Consensus 603 ii~~ta~~~-~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 647 (779)
T PRK11091 603 LVALTANVL-KDKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDTQD 647 (779)
T ss_pred EEEEECCch-HhHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcccc
Confidence 888876554 446788999999999999999999999999876543
No 55
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.62 E-value=3.2e-14 Score=119.18 Aligned_cols=116 Identities=30% Similarity=0.424 Sum_probs=105.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~ 96 (184)
.+|+||||++..+..+...|...|+.+..+.++.+++..+. ...||+||+|+.||+.+|+++++.++. .+.+|+|++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~--~~~~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvl 81 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALA--SKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--cCCCCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 48999999999999999999999999999999999999987 456999999999999999999999964 467899999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
+...+......+++.|+++|+.||++.+++...+..++.
T Consensus 82 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred ECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 998888889999999999999999999999888887654
No 56
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.61 E-value=2.9e-14 Score=131.05 Aligned_cols=119 Identities=29% Similarity=0.513 Sum_probs=108.7
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCE
Q 029986 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPV 93 (184)
Q Consensus 15 ~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~i 93 (184)
+..++|+||||++..+..+...|+..|+.+..+.++.++++.+. ...||+||+|+.||+++|+++++.++. .+.+|+
T Consensus 956 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlil~D~~mp~~~g~~~~~~i~~~~~~~pi 1033 (1197)
T PRK09959 956 PEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVS--MQHYDLLITDVNMPNMDGFELTRKLREQNSSLPI 1033 (1197)
T ss_pred ccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh--cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 34578999999999999999999999999999999999999987 567999999999999999999999964 467899
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
|+++..........+++.|+++|+.||++.++|...++.+..
T Consensus 1034 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1034 WGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 999999888899999999999999999999999999987754
No 57
>PRK13435 response regulator; Provisional
Probab=99.61 E-value=7.7e-14 Score=98.77 Aligned_cols=120 Identities=20% Similarity=0.271 Sum_probs=101.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMP-DMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~-~~~g~~l~~~l~~~~~~~iI 94 (184)
.++|+|+++++.....+...|+..|+.+. .+.+..++++.+. ...||++|+|..++ +.+|+++++.++..+.+|+|
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~dliivd~~~~~~~~~~~~~~~l~~~~~~pii 82 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGR--RRQPDVALVDVHLADGPTGVEVARRLSADGGVEVV 82 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhh--hcCCCEEEEeeecCCCCcHHHHHHHHHhCCCCCEE
Confidence 46899999999999999999998888876 7889999988875 45699999999997 47899999998656688999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
+++...+ ...++..|+++|+.||++.++|...++.+..+...+.
T Consensus 83 ~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~ 126 (145)
T PRK13435 83 FMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARRVGDR 126 (145)
T ss_pred EEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCcccc
Confidence 9986432 2467789999999999999999999999887665443
No 58
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.61 E-value=2.7e-14 Score=107.41 Aligned_cols=112 Identities=12% Similarity=0.116 Sum_probs=94.1
Q ss_pred HHHHHHHHHHh---cCCeEEEECCHHHHHHHHHhcCCCccEEE---EeCCCCCCCHHHHHHHhc-ccCCCCEEEEEccCC
Q 029986 29 WLRILEKMLRK---CLYEVTKCNRAEIALDMLRMSKNGYDIVI---SDVHMPDMDGFKLHEQVG-LEMDLPVIMMSVDGC 101 (184)
Q Consensus 29 ~~~~l~~~L~~---~~~~v~~~~~~~~~~~~l~~~~~~~dlvi---lD~~l~~~~g~~l~~~l~-~~~~~~iIi~~~~~~ 101 (184)
.+..+..+|.. .++.+..+.+++++++.+. ...||+++ +|+.||+++|++++++++ ..+.+|||++|...+
T Consensus 2 ~r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~--~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~ 79 (207)
T PRK11475 2 SSIGIESLFRKFPGNPYKLHTFSSQSSFQDAMS--RISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDI 79 (207)
T ss_pred chHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhc--cCCCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCC
Confidence 35678888865 3566778999999999876 45689998 688899999999999995 457899999998776
Q ss_pred hHHHHHHH-HcCCCceEeCCCCHHHHHHHHHHHHcCCCCCCC
Q 029986 102 TQDVMKGV-THGACNYLLKPIRIKELRNIWQHVAQQPKPFEE 142 (184)
Q Consensus 102 ~~~~~~a~-~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~~ 142 (184)
+.....++ +.||.+|+.||.+.++|.++++.+..+..++++
T Consensus 80 ~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~~~ 121 (207)
T PRK11475 80 EARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQATD 121 (207)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcccCH
Confidence 66666655 799999999999999999999999999887654
No 59
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.60 E-value=1.7e-14 Score=119.40 Aligned_cols=117 Identities=22% Similarity=0.364 Sum_probs=103.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLP 92 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~ 92 (184)
...+|+++||++..+..+...|.+. +.+..+.++.+++..+. +..||+|++|+.||+++|+++++.++.. +.+|
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~~-~~~~~~~~~~~a~~~~~--~~~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKEE-FRVVVVSDPSEALFNAA--ETNYDLVIVSANFENYDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhhc-ceeeeecChHHHHHhcc--cCCCCEEEecCCCCCchHhHHHHHHHhccccCCCc
Confidence 4568999999999999999999764 66667889999998865 5679999999999999999999999642 6899
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
+|+++...+..+...+++.|+.+|+.||++.++|...+....+
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~ 273 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIR 273 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888876543
No 60
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.60 E-value=4.2e-14 Score=117.74 Aligned_cols=112 Identities=23% Similarity=0.363 Sum_probs=100.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCC-----CCHHHHHHHhc-ccCCCCE
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD-----MDGFKLHEQVG-LEMDLPV 93 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-----~~g~~l~~~l~-~~~~~~i 93 (184)
|+||||++..+..+...| .||.+..+.++.++++.+. ...||+||+|+.||+ .+|+++++.++ ..+.+||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~--~~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVR--RHEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHh--hCCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 589999999999999888 6899999999999999987 456999999999996 79999999995 4468999
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
|+++...+.+....+++.|+++|+.||++.++|..++..+..
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 999998888999999999999999999999999988877654
No 61
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.59 E-value=9.5e-14 Score=102.18 Aligned_cols=119 Identities=29% Similarity=0.373 Sum_probs=106.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iI 94 (184)
+..+|+++++++.....+...|...++.+..+.++.++++.+. ...||++++|..+++.+|+++++.++. .+.+|+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii 79 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALP--GLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVI 79 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhc--cCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEE
Confidence 3458999999999999999999988999989999999888876 456999999999999999999999964 4678999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+++...+......+++.|+.+|+.||+...++...+..+..+
T Consensus 80 ~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 999888888889999999999999999999999988887765
No 62
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.59 E-value=9.6e-14 Score=104.50 Aligned_cols=122 Identities=9% Similarity=-0.041 Sum_probs=99.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC--C-eEEEECCHHHHHHHHHhcCCCccEEEEeCC--CCCCCHHHHHHHhc-ccCCC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCL--Y-EVTKCNRAEIALDMLRMSKNGYDIVISDVH--MPDMDGFKLHEQVG-LEMDL 91 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~--~-~v~~~~~~~~~~~~l~~~~~~~dlvilD~~--l~~~~g~~l~~~l~-~~~~~ 91 (184)
|.|+|+||++..++.++.+|...+ + .+..+.++.+++..+. ...||++++|+. ++..+|.++++.++ ..+.+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~--~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~ 78 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD--SLRPSVVFINEDCFIHDASNSQRIKQIINQHPNT 78 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh--ccCCCEEEEeCcccCCCCChHHHHHHHHHHCCCC
Confidence 469999999999999999998654 2 4567899999998876 456999999966 88889999999995 45789
Q ss_pred CEEEEEccCChHHHHHHHHcCCCc-eEeCCCCHHHHHHHHHHHHcCCCCCCC
Q 029986 92 PVIMMSVDGCTQDVMKGVTHGACN-YLLKPIRIKELRNIWQHVAQQPKPFEE 142 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~ga~~-~l~kP~~~~~l~~~l~~~~~~~~~~~~ 142 (184)
++|+++...+..... ++..|+.. |+.|+.+.++|..+++.+..+..+++.
T Consensus 79 ~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~~~ 129 (207)
T PRK15411 79 LFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETTITS 129 (207)
T ss_pred eEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcccCc
Confidence 999999876665543 55555554 889999999999999999998877653
No 63
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.58 E-value=6.9e-14 Score=116.94 Aligned_cols=114 Identities=33% Similarity=0.477 Sum_probs=103.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEEEc
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMMSV 98 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~~~ 98 (184)
|+|+||++..+..+...|...|+.+..+.++.+++..+. ...||+|++|+.||+.+|+++++.++. .+.+|+|+++.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~ 78 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALA--RGQPDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTA 78 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--cCCCCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeC
Confidence 689999999999999999988999999999999999886 456999999999999999999999964 46789999998
Q ss_pred cCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 99 DGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 99 ~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
..+......+++.|+++|+.||++.++|...+..+..
T Consensus 79 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 115 (463)
T TIGR01818 79 HSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALA 115 (463)
T ss_pred CCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHH
Confidence 8888888999999999999999999999998887654
No 64
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.58 E-value=8.6e-14 Score=112.06 Aligned_cols=116 Identities=21% Similarity=0.328 Sum_probs=96.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHH-hcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLR-KCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~-~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi 95 (184)
++|+|+||++..+..+..+|. ..++.+. .+.++.++++.+. ...||+|++|+.||+++|+++++.++....+|+++
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~--~~~pDlVllD~~mp~~~G~e~l~~l~~~~~~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCA--AQPPDVILMDLEMPRMDGVEATRRIMAERPCPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh--ccCCCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999995 5577765 7899999999987 56699999999999999999999997666689999
Q ss_pred EEccCC--hHHHHHHHHcCCCceEeCCC---------CHHHHHHHHHHHHc
Q 029986 96 MSVDGC--TQDVMKGVTHGACNYLLKPI---------RIKELRNIWQHVAQ 135 (184)
Q Consensus 96 ~~~~~~--~~~~~~a~~~ga~~~l~kP~---------~~~~l~~~l~~~~~ 135 (184)
++.... .....++++.|+++|+.||+ ..+++...++.+..
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 987543 45667899999999999999 45566666666554
No 65
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.57 E-value=2.2e-13 Score=112.76 Aligned_cols=116 Identities=30% Similarity=0.491 Sum_probs=105.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~iI 94 (184)
.+|+++++++..+..+...|...++.+..+.++.+++..+. ...||+|++|+.+++.+|+++++.++.. +.+|+|
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICE--REQPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHh--hcCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 37999999999999999999888999999999999999887 4569999999999999999999999653 368999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
++++..+.....+++..|+++|+.||++.++|..++..+.+
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 121 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTR 121 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 99998888899999999999999999999999998887765
No 66
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.56 E-value=9e-13 Score=89.28 Aligned_cols=117 Identities=29% Similarity=0.542 Sum_probs=102.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC-eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLP 92 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~-~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~ 92 (184)
.++++++++++.....+...|...++ .+..+.+..+++..+. ...+|++++|..+++.+|+++++.++.. +..|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGFGFVISDWNMPNMDGLELLKTIRADGAMSALP 82 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhh--ccCCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCc
Confidence 57899999999999999999998887 4777889999988875 4569999999999999999999999643 4678
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
+++++..........++..|+++|+.||++..++...++.+.+
T Consensus 83 ~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~ 125 (129)
T PRK10610 83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125 (129)
T ss_pred EEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHH
Confidence 9999887777888899999999999999999999998887654
No 67
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.55 E-value=7.6e-13 Score=98.66 Aligned_cols=123 Identities=20% Similarity=0.386 Sum_probs=106.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-CCeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKC-LYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLP 92 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~-~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~ 92 (184)
...+|+++++++..+..+...|... ++.+ ..+.+..+++..+. ...||++++|..+++.+|+++++.++. .+..|
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~ 82 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE--SLDPDLILLDLNMPGMNGLETLDKLREKSLSGR 82 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHH--hCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 3468999999999999999999765 4554 46889999998876 456999999999999999999999964 36789
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
+++++..........++..|+++|+.||++..+|...+..+..+....
T Consensus 83 vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~~~~ 130 (216)
T PRK10651 83 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVL 130 (216)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCccc
Confidence 999998888888889999999999999999999999999998875443
No 68
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.55 E-value=1.6e-13 Score=119.48 Aligned_cols=118 Identities=20% Similarity=0.178 Sum_probs=102.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iI 94 (184)
+.++|+|+||++..+..+...|...|+.+..+.++.+++..+. ...||+||+|..||+++|+++++.++. .+.+|+|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~--~~~~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI 83 (665)
T PRK13558 6 PTRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVE--AGEIDCVVADHEPDGFDGLALLEAVRQTTAVPPVV 83 (665)
T ss_pred cceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhh--ccCCCEEEEeccCCCCcHHHHHHHHHhcCCCCCEE
Confidence 3579999999999999999999888999999999999999876 566999999999999999999999964 4689999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHH--HHHHHHHHHHc
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIK--ELRNIWQHVAQ 135 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~--~l~~~l~~~~~ 135 (184)
+++...+......++..|+.+|+.||.... .+..++.....
T Consensus 84 ~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~ 126 (665)
T PRK13558 84 VVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVP 126 (665)
T ss_pred EEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhh
Confidence 999988889999999999999999997543 55566665554
No 69
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.54 E-value=6.8e-13 Score=98.73 Aligned_cols=121 Identities=25% Similarity=0.387 Sum_probs=104.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh-cCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRK-CLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~-~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~i 93 (184)
.++|+++++++..+..+...|.. .++.+. .+.+..+++..+. ...||++++|..+++.+|.++++.++.. +..|+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLAN--RLDPDVILLDLNMKGMSGLDTLNALRRDGVTAQI 83 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH--hcCCCEEEEecCCCCCcHHHHHHHHHHhCCCCeE
Confidence 46899999999999999999975 467664 6889999988876 4569999999999999999999999644 57789
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKP 139 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~ 139 (184)
++++..........+++.|+++|+.||++..+|...+..+..+...
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~ 129 (215)
T PRK10403 84 IILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKV 129 (215)
T ss_pred EEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCCee
Confidence 9998887788888999999999999999999999999988776543
No 70
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.53 E-value=1e-12 Score=97.17 Aligned_cols=121 Identities=21% Similarity=0.313 Sum_probs=104.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-CCeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC-LYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~-~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~i 93 (184)
.++|+++++++..+..+...|... ++.+ ..+.++.+++..+. ...||++++|..+++.+|+++++.++. .+..|+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 80 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACR--QLEPDIVILDLGLPGMNGLDVIPQLHQRWPAMNI 80 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHHHCCCCcE
Confidence 468999999999999999999875 4554 47888888888776 456999999999999999999999964 467899
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKP 139 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~ 139 (184)
++++..........++..|+++|+.||++..+|...+..+..+...
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 126 (211)
T PRK15369 81 LVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRY 126 (211)
T ss_pred EEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCce
Confidence 9999888888888999999999999999999999999988776543
No 71
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.52 E-value=7.4e-13 Score=107.30 Aligned_cols=117 Identities=28% Similarity=0.375 Sum_probs=96.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-CCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC-LYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~-~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iI 94 (184)
.++|+|+||++..+..+...|... ++.+. .+.++.+++..+. ...||+|++|+.||+++|++++++++....+|+|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~--~~~~DlVllD~~mp~~dgle~l~~i~~~~~~piI 80 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIK--KLNPDVITLDVEMPVMDGLDALEKIMRLRPTPVV 80 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh--hhCCCEEEEeCCCCCCChHHHHHHHHHhCCCCEE
Confidence 468999999999999999999876 77776 7889999999876 4569999999999999999999999655459999
Q ss_pred EEEccC--ChHHHHHHHHcCCCceEeCCCCH---------HHHHHHHHHHHc
Q 029986 95 MMSVDG--CTQDVMKGVTHGACNYLLKPIRI---------KELRNIWQHVAQ 135 (184)
Q Consensus 95 i~~~~~--~~~~~~~a~~~ga~~~l~kP~~~---------~~l~~~l~~~~~ 135 (184)
+++... .......+++.|+++|+.||+.. .++...++.+.+
T Consensus 81 vls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~~~ 132 (354)
T PRK00742 81 MVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAAAR 132 (354)
T ss_pred EEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHHhh
Confidence 998643 33566789999999999999943 445555555433
No 72
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.52 E-value=3e-13 Score=107.52 Aligned_cols=103 Identities=29% Similarity=0.435 Sum_probs=91.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCL--YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~--~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi 95 (184)
++|++|||....+..++..|...+ ..+..+.|+.++++.+. +..||+|.+|+.||.+||+++++.+-....+|||+
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~--~~~PDVi~ld~emp~mdgl~~l~~im~~~p~pVim 79 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVK--KLKPDVITLDVEMPVMDGLEALRKIMRLRPLPVIM 79 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHH--hcCCCEEEEecccccccHHHHHHHHhcCCCCcEEE
Confidence 689999999999999999999987 56678999999999998 67799999999999999999999985457899999
Q ss_pred EEccCC--hHHHHHHHHcCCCceEeCCCC
Q 029986 96 MSVDGC--TQDVMKGVTHGACNYLLKPIR 122 (184)
Q Consensus 96 ~~~~~~--~~~~~~a~~~ga~~~l~kP~~ 122 (184)
+++-.+ .+...++++.||.||+.||..
T Consensus 80 vsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 80 VSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EeccccccHHHHHHHHhcCcceeecCCCc
Confidence 986433 467779999999999999984
No 73
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.48 E-value=2.8e-12 Score=114.27 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=105.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi 95 (184)
+.+|+|+||++..+..+...|...||.+..+.++.++++.+......||+||+ .+++++|+++++.++. .+.+|||+
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipIIv 774 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPIIL 774 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 56899999999999999999999999999999999999998643344799999 7899999999999963 46889999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
++.........+++..| ++|+.||++..+|..+++.+++..
T Consensus 775 ls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 775 GGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred EeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 99888888888999999 999999999999999999887643
No 74
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.48 E-value=7.6e-13 Score=96.23 Aligned_cols=117 Identities=21% Similarity=0.264 Sum_probs=97.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi 95 (184)
.++|++++|++..+..+...|...||.+ ..+.++......+. ...||+||+|+.+|..+-.+-.-.....+..|||+
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~--~~~pDvVildie~p~rd~~e~~~~~~~~~~~piv~ 82 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE--RLQPDVVILDIEMPRRDIIEALLLASENVARPIVA 82 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH--hcCCCEEEEecCCCCccHHHHHHHhhcCCCCCEEE
Confidence 5689999999999999999999888864 46666666666665 56699999999999998444444444556789999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
++.+++++....+.++|+.+|++||++...+...+.-+..
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~s 122 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVS 122 (194)
T ss_pred EEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHH
Confidence 9999999999999999999999999999988888877655
No 75
>PRK09191 two-component response regulator; Provisional
Probab=99.45 E-value=6.9e-12 Score=97.00 Aligned_cols=116 Identities=19% Similarity=0.285 Sum_probs=96.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPD-MDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-~~g~~l~~~l~~~~~~~iI 94 (184)
..+|+|+||++..+..+...|+..|+.+. .+.++.+++..+. ...||+||+|+.+|+ .+|+++++.++...++|+|
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~--~~~~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii 214 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAK--KTRPGLILADIQLADGSSGIDAVNDILKTFDVPVI 214 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHh--ccCCCEEEEecCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 34799999999999999999998888876 6888899998876 456999999999995 7899999999644488999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
++++..+... .+...|+.+|+.||++.++|...+..+...
T Consensus 215 ~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 215 FITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 9987655433 334467889999999999999999887664
No 76
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.38 E-value=3.6e-11 Score=78.21 Aligned_cols=110 Identities=34% Similarity=0.593 Sum_probs=95.5
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEEEcc
Q 029986 21 LVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMMSVD 99 (184)
Q Consensus 21 livdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~~~~ 99 (184)
+++++++..+..+...+...|+.+..+.+..++...+. ...||++++|..+++.+|.++++.++. .+..|+++++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLA--EEKPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHH--hCCCCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEec
Confidence 47899999999999999888898888888999888876 456999999999999999999999864 467889988877
Q ss_pred CChHHHHHHHHcCCCceEeCCCCHHHHHHHHHH
Q 029986 100 GCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132 (184)
Q Consensus 100 ~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~ 132 (184)
........++..|+.+|+.||++..++...+..
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~ 111 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRA 111 (113)
T ss_pred ccHHHHHHHHHcChhhHccCCCCHHHHHHHHHh
Confidence 667777889999999999999999999888764
No 77
>PRK13557 histidine kinase; Provisional
Probab=99.36 E-value=4.1e-11 Score=101.23 Aligned_cols=120 Identities=22% Similarity=0.283 Sum_probs=105.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHhcc-cCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD-MDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-~~g~~l~~~l~~-~~~~~iI 94 (184)
+.+|+|+++++..+..+...|+..|+.+..+.+..++++.+.. ...||++++|..+++ .+|+++++.++. .+.+|++
T Consensus 415 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii 493 (540)
T PRK13557 415 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDS-HPEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVL 493 (540)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhc-CCCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 4589999999999999999999889999999999999998752 235999999999997 899999999964 4678999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
+++...+......++..|+.+|+.||++.++|...+..+..+.
T Consensus 494 ~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 536 (540)
T PRK13557 494 LTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDGP 536 (540)
T ss_pred EEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcCC
Confidence 9988877777888899999999999999999999999877643
No 78
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.27 E-value=8.4e-11 Score=90.62 Aligned_cols=112 Identities=27% Similarity=0.444 Sum_probs=93.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-CC-eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKC-LY-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~-~~-~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iI 94 (184)
++|+++||++..++.+...+... .+ .+..+.++.++++.+. ...||++|+|+.||+++|+++...++.. +..+|+
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Iv 79 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQ--GLRPDLVFLDIAMPDINGIELAARIRKGDPRPAIV 79 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHh--ccCCCeEEEeeccCccchHHHHHHhcccCCCCeEE
Confidence 68999999999999999999832 22 2237888999999987 4479999999999999999999999764 455566
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
++++ ..+++..+++..|.||+.||+..+.|...+...
T Consensus 80 fvt~--~~~~a~~afev~a~d~i~kp~~~~~l~~~l~~~ 116 (244)
T COG3279 80 FVTA--HDEYAVAAFEVEALDYLLKPISEERLAKTLERL 116 (244)
T ss_pred EEEe--hHHHHHHHHhHHHHhhhcCcchHHHHHHHHHHH
Confidence 6664 478888899999999999999999999998753
No 79
>PRK10693 response regulator of RpoS; Provisional
Probab=99.27 E-value=9e-11 Score=93.29 Aligned_cols=88 Identities=26% Similarity=0.411 Sum_probs=77.0
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEeCCC-CH
Q 029986 46 KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI-RI 123 (184)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~-~~ 123 (184)
.+.++.++++.+. ...||+|++|+.||+++|+++++.++.. +.+|+|+++...+.+...++++.|+++|+.||+ +.
T Consensus 2 ~a~~g~~al~~l~--~~~pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~ 79 (303)
T PRK10693 2 LAANGVDALELLG--GFTPDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDL 79 (303)
T ss_pred EeCCHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcH
Confidence 3567888998886 4669999999999999999999999644 678999999998888999999999999999999 48
Q ss_pred HHHHHHHHHHHc
Q 029986 124 KELRNIWQHVAQ 135 (184)
Q Consensus 124 ~~l~~~l~~~~~ 135 (184)
+++..++...+.
T Consensus 80 ~~L~~~i~~~l~ 91 (303)
T PRK10693 80 NRLREMVFACLY 91 (303)
T ss_pred HHHHHHHHHHhh
Confidence 899888877664
No 80
>PRK15029 arginine decarboxylase; Provisional
Probab=99.13 E-value=1.1e-09 Score=95.71 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=85.4
Q ss_pred CeEEEEeCCHH--------HHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHH----HHHHHh
Q 029986 18 LRVLVVDDDPI--------WLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF----KLHEQV 85 (184)
Q Consensus 18 ~~Ilivdd~~~--------~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~----~l~~~l 85 (184)
|+|+||||+.. .++.|...|+..||++..+.++++++..+.. ...||+||+|+.||+++|+ ++++++
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~-~~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS-NEAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-cCCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 57999999995 6999999999999999999999999999863 2469999999999999997 899999
Q ss_pred cc-cCCCCEEEEEccCC--hHHHHHHHHcCCCceEeCCCCHHHH
Q 029986 86 GL-EMDLPVIMMSVDGC--TQDVMKGVTHGACNYLLKPIRIKEL 126 (184)
Q Consensus 86 ~~-~~~~~iIi~~~~~~--~~~~~~a~~~ga~~~l~kP~~~~~l 126 (184)
+. .+++|||++|.... .......++ -+++|+.+--...++
T Consensus 80 R~~~~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 122 (755)
T PRK15029 80 HERQQNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADF 122 (755)
T ss_pred HhhCCCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHH
Confidence 75 46899999998765 333333333 356777766554443
No 81
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.61 E-value=1.8e-06 Score=77.88 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=91.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHH-Hhcc--cCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHE-QVGL--EMDLP 92 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~-~l~~--~~~~~ 92 (184)
.+.+|+++|+++..+..+..+|...|+.+..+.+... +. ...||++++|..+++..+..... .++. ....+
T Consensus 535 ~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~--~~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (919)
T PRK11107 535 AGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LP--EAHYDILLLGLPVTFREPLTMLHERLAKAKSMTDF 608 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hc--cCCCCEEEecccCCCCCCHHHHHHHHHhhhhcCCc
Confidence 4679999999999999999999999999998888776 23 45699999999999877655443 3332 22345
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
+++++..........+.+.|+++|+.||+...++...+....
T Consensus 609 ~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 609 LILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred EEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 777777777778888999999999999999999988887654
No 82
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=98.23 E-value=2.3e-05 Score=52.93 Aligned_cols=106 Identities=12% Similarity=0.178 Sum_probs=73.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHh-cccCCCCEEEEE
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMS 97 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l-~~~~~~~iIi~~ 97 (184)
||+|+|||...+..|+..|+=.|+....++..+ ...... ....+.+++-..-.+ ...+.++.+ +..+++|++++.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~-~~~~~~--~~~~~~~~v~~g~~~-~~~~~l~~l~~~~~~~Pvlllg 76 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSD-WSQADW--SSPWEACAVILGSCS-KLAELLKELLKWAPHIPVLLLG 76 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHH-HHHhhh--hcCCcEEEEEecCch-hHHHHHHHHHhhCCCCCEEEEC
Confidence 699999999999999999998888887776433 323222 233455544332222 345566666 556899999997
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
........ ..+.+-+..|++..+|.+.++..
T Consensus 77 ~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 77 EHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 66544111 12556689999999999999875
No 83
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.22 E-value=3e-06 Score=69.95 Aligned_cols=93 Identities=28% Similarity=0.389 Sum_probs=77.9
Q ss_pred CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCC
Q 029986 42 YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121 (184)
Q Consensus 42 ~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~ 121 (184)
+++..+..+..++..+. ...||++++|..||+++|+++++.+++.+.. +++++...........+++|+++|++||.
T Consensus 13 ~~v~~a~~g~~~l~~~~--~~~~~~~lld~~m~~~~~~~~~~~lk~~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~~ 89 (435)
T COG3706 13 KEVATAKKGLIALAILL--DHKPDYKLLDVMMPGMDGFELCRRLKAEPAT-VVMVTALDDSAPRVRGLKAGADDFLTKPV 89 (435)
T ss_pred hhhhhccchHHHHHHHh--cCCCCeEEeecccCCcCchhHHHHHhcCCcc-eEEEEecCCCCcchhHHhhhhhhhccCCC
Confidence 45666888888888887 6779999999999999999999999866544 77777777778888999999999999999
Q ss_pred CHHHHHHHHHHHHcCC
Q 029986 122 RIKELRNIWQHVAQQP 137 (184)
Q Consensus 122 ~~~~l~~~l~~~~~~~ 137 (184)
....+......+...+
T Consensus 90 ~~~~~~~r~~~l~~~k 105 (435)
T COG3706 90 NDSQLFLRAKSLVRLK 105 (435)
T ss_pred ChHHHHHhhhhhccch
Confidence 9888877777765543
No 84
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.96 E-value=0.00013 Score=40.20 Aligned_cols=54 Identities=37% Similarity=0.680 Sum_probs=46.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l 73 (184)
++++++++++.....+...+...|+.+..+.+...+...+. ...+|++++|..+
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~vi~~~~~ 54 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLK--EEKPDLILLDIMM 54 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHH--hcCCCEEEEeccC
Confidence 46999999999999999999988999888999998888775 4468999999764
No 85
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=97.38 E-value=0.015 Score=39.88 Aligned_cols=105 Identities=11% Similarity=-0.022 Sum_probs=71.7
Q ss_pred eCCHHHHHHHHHHHHhcCCeEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHhccc-CCCCEEEEE
Q 029986 24 DDDPIWLRILEKMLRKCLYEVTKCN---RAEIALDMLRMSKNGYDIVISDVHMPDMD--GFKLHEQVGLE-MDLPVIMMS 97 (184)
Q Consensus 24 dd~~~~~~~l~~~L~~~~~~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~~--g~~l~~~l~~~-~~~~iIi~~ 97 (184)
|.+..-...+..+|+..||++.... ..++..+... +..||+|.+-..+.... --++++.+++. +....+++.
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~--~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAI--QEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 5666677778888899999987554 3666666665 56799999977664322 23455566544 334445555
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHH
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l 130 (184)
.....+....+.++|.+.|+..--+.++....+
T Consensus 88 G~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 88 GIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 545556677888999999998887777765544
No 86
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.86 E-value=0.085 Score=37.04 Aligned_cols=116 Identities=14% Similarity=0.049 Sum_probs=81.4
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCCeEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHhcc
Q 029986 17 GLRVLVV----DDDPIWLRILEKMLRKCLYEVTKCN---RAEIALDMLRMSKNGYDIVISDVHMPDMD--GFKLHEQVGL 87 (184)
Q Consensus 17 ~~~Iliv----dd~~~~~~~l~~~L~~~~~~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~~--g~~l~~~l~~ 87 (184)
..+|++. |.+..-...+..+|+..||++.... ..++..+.+. +..||+|.+...+.... .-++++.++.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~--~~~~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAI--ETDADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEcCccccCHHHHHHHHHHHHh
Confidence 3467777 7778788888899999999988654 4677777765 56699999988776432 3445666654
Q ss_pred c-C-CCCEEEEEccC------ChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 88 E-M-DLPVIMMSVDG------CTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 88 ~-~-~~~iIi~~~~~------~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
. . +++ +++.... ..+....+.+.|++.++...-+.+++...+++.++
T Consensus 81 ~~~~~~~-i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 81 AGLGDIL-LYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred cCCCCCe-EEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 3 3 444 3443322 23445678889999999988888999888887655
No 87
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=96.86 E-value=0.04 Score=37.45 Aligned_cols=93 Identities=15% Similarity=0.039 Sum_probs=60.5
Q ss_pred eCCHHHHHHHHHHHHhcCCeEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHhcccCC-CCEEEEE
Q 029986 24 DDDPIWLRILEKMLRKCLYEVTKCN---RAEIALDMLRMSKNGYDIVISDVHMPDM--DGFKLHEQVGLEMD-LPVIMMS 97 (184)
Q Consensus 24 dd~~~~~~~l~~~L~~~~~~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~--~g~~l~~~l~~~~~-~~iIi~~ 97 (184)
|.+..-...+..+|+..||++.... ..++..+.+. +..||+|.+-..+... ...++++.+++... -+.|++.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~--~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK--EEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 5566667778899999999986433 4566667666 5669999998765442 33556667754432 3344555
Q ss_pred ccCChHHHHHHHHcCCCceEe
Q 029986 98 VDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~ 118 (184)
..........+...|++.|+.
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred CCCCChhHHHHHHcCCeEEEC
Confidence 544444445678889976665
No 88
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=96.81 E-value=0.015 Score=39.58 Aligned_cols=104 Identities=14% Similarity=0.140 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCC--CCHHHHHHHhcc-cCCCCEEEEEccCChHHH
Q 029986 29 WLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD--MDGFKLHEQVGL-EMDLPVIMMSVDGCTQDV 105 (184)
Q Consensus 29 ~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~--~~g~~l~~~l~~-~~~~~iIi~~~~~~~~~~ 105 (184)
....|...|...|+++..+.+.++++..+.. .....+|++++. ++ ....++++.++. ..++||.+++.....+.+
T Consensus 5 ~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~-~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l 82 (115)
T PF03709_consen 5 ASRELAEALEQRGREVVDADSTDDALAIIES-FTDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDL 82 (115)
T ss_dssp HHHHHHHHHHHTTTEEEEESSHHHHHHHHHC-TTTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEeCChHHHHHHHHh-CCCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccC
Confidence 3456778888889999999999999999974 356899999986 11 234567888853 468999999875544443
Q ss_pred HHHHHcCCCceEeCCCCHH-HHHHHHHHHH
Q 029986 106 MKGVTHGACNYLLKPIRIK-ELRNIWQHVA 134 (184)
Q Consensus 106 ~~a~~~ga~~~l~kP~~~~-~l~~~l~~~~ 134 (184)
-.-.-..+++|+....+.. .+...+..+.
T Consensus 83 ~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa 112 (115)
T PF03709_consen 83 PAEVLGEVDGFIWLFEDTAEFIARRIEAAA 112 (115)
T ss_dssp CHHHHCCESEEEETTTTTHHHHHHHHHHHH
T ss_pred CHHHHhhccEEEEecCCCHHHHHHHHHHHH
Confidence 3334445788887766444 4455555543
No 89
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=96.52 E-value=0.14 Score=35.70 Aligned_cols=108 Identities=9% Similarity=-0.060 Sum_probs=71.9
Q ss_pred eCCHHHHHHHHHHHHhcCCeEEE---ECCHHHHHHHHHhcCCCccEEEEeCCCCCC-C-HHHHHHHhccc-CCCCEEEEE
Q 029986 24 DDDPIWLRILEKMLRKCLYEVTK---CNRAEIALDMLRMSKNGYDIVISDVHMPDM-D-GFKLHEQVGLE-MDLPVIMMS 97 (184)
Q Consensus 24 dd~~~~~~~l~~~L~~~~~~v~~---~~~~~~~~~~l~~~~~~~dlvilD~~l~~~-~-g~~l~~~l~~~-~~~~iIi~~ 97 (184)
|.+..-...+..+|+..||+|.. ..+.+++.+... +..+|+|.+-..+... . --++++.+++. .....+++.
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~--e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAV--EADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH--HcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 56677778888999999999874 345777777776 4569999986654321 1 12345555443 223344555
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
.....+......++|+++|+..--+..++...+...
T Consensus 91 G~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~ 126 (132)
T TIGR00640 91 GVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKK 126 (132)
T ss_pred CCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 434455667789999999998877777777666553
No 90
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=96.42 E-value=0.025 Score=38.38 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=75.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHh--cccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQV--GLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l--~~~~~~~iI 94 (184)
+.+.+.||.|...+......|...+.+|....... .+. ..+||.+++.+-.+-.+...+.... +.-.-.-.+
T Consensus 11 gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~----~lp--~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mtd~v 84 (140)
T COG4999 11 GKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFS----ALP--PAHYDMMLLGVAVTFRENLTMQHERLAKALSMTDFV 84 (140)
T ss_pred cceeEEecCccHHHHHHHHHHhcCCceEEeccccc----ccC--hhhhceeeecccccccCCchHHHHHHHHHHhhhcce
Confidence 55799999999999999999999999987654432 222 3569999999877766654444322 211112233
Q ss_pred EEEccCCh-HHHHHHHHcCCCceEeCCCCHHHHHHHHHH
Q 029986 95 MMSVDGCT-QDVMKGVTHGACNYLLKPIRIKELRNIWQH 132 (184)
Q Consensus 95 i~~~~~~~-~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~ 132 (184)
|++-.+.. -.+....+.|+-+++.||++...|...+-.
T Consensus 85 ilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptlla 123 (140)
T COG4999 85 ILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTLLA 123 (140)
T ss_pred EEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHHHHH
Confidence 44433333 345567888999999999999988775443
No 91
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=96.17 E-value=0.017 Score=52.67 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=42.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCC
Q 029986 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH 72 (184)
Q Consensus 15 ~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~ 72 (184)
.++.+|+++||++..+..++.+|+..|+.|..+.+. .. ...||+||+|..
T Consensus 687 l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~------~~--~~~~Dlvl~D~~ 736 (894)
T PRK10618 687 LDGVTVLLDITSEEVRKIVTRQLENWGATCITPDER------LI--SQEYDIFLTDNP 736 (894)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCcc------cc--CCCCCEEEECCC
Confidence 357899999999999999999999999999887652 12 455999999987
No 92
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=95.11 E-value=0.13 Score=41.32 Aligned_cols=85 Identities=14% Similarity=0.045 Sum_probs=53.7
Q ss_pred CCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEc-cCChHHHHHHHHcCCCceEeC
Q 029986 41 LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSV-DGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 41 ~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~-~~~~~~~~~a~~~ga~~~l~k 119 (184)
|.++..+.+..++..... ...+|++|..+... .+... .-+...++++.. ..+.+....++..|+.+|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~----~~~~~-~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~ 71 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA----RAPLVLVDADMAEA----CAAAG-LPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVL 71 (322)
T ss_pred CCceEEccCchhhhhccc----cCCeEEECchhhhH----HHhcc-CCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeC
Confidence 345555665554444332 25789998743211 11111 111233554444 555778889999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029986 120 PIRIKELRNIWQHVA 134 (184)
Q Consensus 120 P~~~~~l~~~l~~~~ 134 (184)
|.+..+|.+.+..+.
T Consensus 72 P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 72 PEAEGWLVELLADLD 86 (322)
T ss_pred CCCHHHHHHHHHhhc
Confidence 999999999998874
No 93
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.89 E-value=0.62 Score=30.46 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=54.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEEEE------CCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCC
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKC------NRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLP 92 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~~~------~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~ 92 (184)
+|+||.........++..+++.|+..... ......+... -..+|+||+=...-.=+....++...+..+.|
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~---i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip 77 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSK---IKKADLVIVFTDYVSHNAMWKVKKAAKKYGIP 77 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHh---cCCCCEEEEEeCCcChHHHHHHHHHHHHcCCc
Confidence 48999998888889999999999988777 2222122221 23479998866544444444455554456788
Q ss_pred EEEEEccCChHHHHHHH
Q 029986 93 VIMMSVDGCTQDVMKGV 109 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~ 109 (184)
+++.-+ .......+++
T Consensus 78 ~~~~~~-~~~~~l~~~l 93 (97)
T PF10087_consen 78 IIYSRS-RGVSSLERAL 93 (97)
T ss_pred EEEECC-CCHHHHHHHH
Confidence 887643 3344444443
No 94
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=94.89 E-value=0.54 Score=41.88 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=57.8
Q ss_pred CeEEEEeCCH-H-----HHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCC
Q 029986 18 LRVLVVDDDP-I-----WLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMD 90 (184)
Q Consensus 18 ~~Ilivdd~~-~-----~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~ 90 (184)
|+|++++++. . ....|...|++.|+++..+.+..++...+.. ....+++++++.-. ..++++.++. ...
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 76 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEH-NPRICGVIFDWDEY---SLDLCSDINQLNEY 76 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhc-ccceeEEEEecccc---hHHHHHHHHHhCCC
Confidence 4677887663 1 2455677788889999999999999998863 45589999996432 3457787753 468
Q ss_pred CCEEEEEccC
Q 029986 91 LPVIMMSVDG 100 (184)
Q Consensus 91 ~~iIi~~~~~ 100 (184)
+||+++....
T Consensus 77 ~Pv~~~~~~~ 86 (713)
T PRK15399 77 LPLYAFINTH 86 (713)
T ss_pred CCEEEEcCcc
Confidence 9999987643
No 95
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=94.58 E-value=0.84 Score=30.69 Aligned_cols=93 Identities=22% Similarity=0.164 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCC-CC-CHHHHHHHhcccCCCCEEEEEccC
Q 029986 26 DPIWLRILEKMLRKCLYEVTKCN---RAEIALDMLRMSKNGYDIVISDVHMP-DM-DGFKLHEQVGLEMDLPVIMMSVDG 100 (184)
Q Consensus 26 ~~~~~~~l~~~L~~~~~~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~-~~-~g~~l~~~l~~~~~~~iIi~~~~~ 100 (184)
++.-...+..+|++.|+++.... +.++..+.+. ...||+|.+...+. .. ...++++.++...+-..+++....
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~--~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALR--AERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHH--HTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHh--cCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 45567788999999999987662 3466667666 34699999987433 22 245566666544333344444443
Q ss_pred ChHHHHHHHH--cCCCceEeCC
Q 029986 101 CTQDVMKGVT--HGACNYLLKP 120 (184)
Q Consensus 101 ~~~~~~~a~~--~ga~~~l~kP 120 (184)
-.......++ .|+|..+.-+
T Consensus 91 ~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 91 ATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp SGHHHHHHHHHHHTSEEEEEET
T ss_pred hhcChHHHhccCcCcceecCCC
Confidence 3333344444 6777555433
No 96
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=94.36 E-value=0.71 Score=41.13 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=57.3
Q ss_pred CeEEEEeCCH------HHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhc-ccCC
Q 029986 18 LRVLVVDDDP------IWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG-LEMD 90 (184)
Q Consensus 18 ~~Ilivdd~~------~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~-~~~~ 90 (184)
|+|++|+++. .....|...|++.|++|..+.+..++...... ....+++++++.- . ...+++.++ ....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 76 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIEN-NARLCGVIFDWDK--Y-NLELCEEISKMNEN 76 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-ccceeEEEEecch--h-hHHHHHHHHHhCCC
Confidence 4677777662 12455777888889999999999999998763 4558999999632 2 245777775 3468
Q ss_pred CCEEEEEccC
Q 029986 91 LPVIMMSVDG 100 (184)
Q Consensus 91 ~~iIi~~~~~ 100 (184)
+||+++....
T Consensus 77 ~Pv~~~~~~~ 86 (714)
T PRK15400 77 LPLYAFANTY 86 (714)
T ss_pred CCEEEEcccc
Confidence 9999987643
No 97
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=94.30 E-value=1.2 Score=31.10 Aligned_cols=108 Identities=6% Similarity=-0.042 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEE---CCHHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHhccc-CCCCEEEEEc
Q 029986 25 DDPIWLRILEKMLRKCLYEVTKC---NRAEIALDMLRMSKNGYDIVISDVHMPDMD--GFKLHEQVGLE-MDLPVIMMSV 98 (184)
Q Consensus 25 d~~~~~~~l~~~L~~~~~~v~~~---~~~~~~~~~l~~~~~~~dlvilD~~l~~~~--g~~l~~~l~~~-~~~~iIi~~~ 98 (184)
-+..-...+..+|+..||+|... -..++..+... +..+|+|-+...|.... --++.+.+++. ..-+.+++..
T Consensus 13 ~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~--~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG 90 (134)
T TIGR01501 13 CHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAI--ETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGG 90 (134)
T ss_pred hhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecC
Confidence 34455567888999999998743 46777887776 45699999987765432 23355556433 2234455554
Q ss_pred cC---ChH---HHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 99 DG---CTQ---DVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 99 ~~---~~~---~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
.. ..+ ...++.+.|++..+...-+.+++...++..+
T Consensus 91 ~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 91 NLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred CcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 21 111 2346888999999988888888888777654
No 98
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=94.25 E-value=0.99 Score=34.82 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=68.4
Q ss_pred CeEEEEeCCHHHHHHHH------HHHHhcCCeEE-EE-CCHHHHHHHHHhcCCCccEEEEeCCCC---------CCCHHH
Q 029986 18 LRVLVVDDDPIWLRILE------KMLRKCLYEVT-KC-NRAEIALDMLRMSKNGYDIVISDVHMP---------DMDGFK 80 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~------~~L~~~~~~v~-~~-~~~~~~~~~l~~~~~~~dlvilD~~l~---------~~~g~~ 80 (184)
+|+=|+.|+....-.+. +.|-+.|+.+. .+ .|...+..+.. .++++| || +..-.+
T Consensus 94 iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~---~G~~~v-----mPlg~pIGsg~Gi~~~~ 165 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLED---AGCAAV-----MPLGSPIGSGQGLLNPY 165 (248)
T ss_pred EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH---cCCCEe-----CCCCcCCCCCCCCCCHH
Confidence 35555555543332222 23334488776 44 45555555443 468887 34 111256
Q ss_pred HHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE-----eCCCCHHHHHHHHHHHHc
Q 029986 81 LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL-----LKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 81 l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l-----~kP~~~~~l~~~l~~~~~ 135 (184)
+++.++...++|||+=+.-.+++.+..+++.|+++.+ .|.-++..+.+.+.....
T Consensus 166 ~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~ 225 (248)
T cd04728 166 NLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVE 225 (248)
T ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHH
Confidence 7787765567899888888889999999999999996 453445566665555543
No 99
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.92 E-value=1.2 Score=34.36 Aligned_cols=110 Identities=20% Similarity=0.199 Sum_probs=68.4
Q ss_pred CeEEEEeCCHHHHHHHH------HHHHhcCCeEE-EEC-CHHHHHHHHHhcCCCccEEEEeCCCC---------CCCHHH
Q 029986 18 LRVLVVDDDPIWLRILE------KMLRKCLYEVT-KCN-RAEIALDMLRMSKNGYDIVISDVHMP---------DMDGFK 80 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~------~~L~~~~~~v~-~~~-~~~~~~~~l~~~~~~~dlvilD~~l~---------~~~g~~ 80 (184)
+|+=|+.|+....-.+. +.|-+.|+.+. .+. |...+-.+. ..+|++| || +..-.+
T Consensus 94 iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~---~~G~~~v-----mPlg~pIGsg~gi~~~~ 165 (250)
T PRK00208 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLE---EAGCAAV-----MPLGAPIGSGLGLLNPY 165 (250)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH---HcCCCEe-----CCCCcCCCCCCCCCCHH
Confidence 45556665543222222 23334488776 444 555555544 3468887 44 111146
Q ss_pred HHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE-----eCCCCHHHHHHHHHHHHc
Q 029986 81 LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL-----LKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 81 l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l-----~kP~~~~~l~~~l~~~~~ 135 (184)
+++.++...++|||+=+.-.+++.+..+++.|+++.+ .|--++..+.+.+.....
T Consensus 166 ~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~ 225 (250)
T PRK00208 166 NLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVE 225 (250)
T ss_pred HHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHH
Confidence 6777765567899888888889999999999999996 453445666665555543
No 100
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=93.91 E-value=1.6 Score=33.01 Aligned_cols=102 Identities=14% Similarity=0.184 Sum_probs=66.4
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCCeEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHhcc
Q 029986 17 GLRVLVV----DDDPIWLRILEKMLRKCLYEVTKCN---RAEIALDMLRMSKNGYDIVISDVHMPDM--DGFKLHEQVGL 87 (184)
Q Consensus 17 ~~~Iliv----dd~~~~~~~l~~~L~~~~~~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~--~g~~l~~~l~~ 87 (184)
.-+|++. |.+..=...+..+|+..||+|.... ..++..+.+. +..||+|.+...++.. .--++++.++.
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~--~~~~~~V~lS~~~~~~~~~~~~~i~~L~~ 165 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAK--EHKADIIGLSGLLVPSLDEMVEVAEEMNR 165 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEccchhccHHHHHHHHHHHHh
Confidence 3477777 7777778888899999999998655 3677777766 5679999998877653 23445666654
Q ss_pred c-CCCCEEEEEccCChHHHHH---HHHcCCCceEeCC
Q 029986 88 E-MDLPVIMMSVDGCTQDVMK---GVTHGACNYLLKP 120 (184)
Q Consensus 88 ~-~~~~iIi~~~~~~~~~~~~---a~~~ga~~~l~kP 120 (184)
. .+++|++=...-+.+.... +-..|||.|-.-.
T Consensus 166 ~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 166 RGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred cCCCCeEEEEChhcCHHHHhhhhccccCCCceEecCH
Confidence 3 3455554433333333332 2346998776533
No 101
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=93.72 E-value=2.2 Score=31.86 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=64.1
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCCeEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHhcc
Q 029986 17 GLRVLVV----DDDPIWLRILEKMLRKCLYEVTKCN---RAEIALDMLRMSKNGYDIVISDVHMPDM--DGFKLHEQVGL 87 (184)
Q Consensus 17 ~~~Iliv----dd~~~~~~~l~~~L~~~~~~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~--~g~~l~~~l~~ 87 (184)
..+|++. |.+..=...+..+|+..||++.... ..++..+.+. +..||+|-+...+... ..-++++.++.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~--~~~~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK--EHKPDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEeccccccHHHHHHHHHHHHH
Confidence 3477777 6777778888899999999987543 4667777776 5679999998876653 23445666654
Q ss_pred cC---CCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 88 EM---DLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 88 ~~---~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.+ +++|++ ....-... -+-..||+.|-.
T Consensus 160 ~~~~~~~~i~v-GG~~~~~~--~~~~~GaD~~~~ 190 (201)
T cd02070 160 AGLRDKVKVMV-GGAPVNQE--FADEIGADGYAE 190 (201)
T ss_pred CCCCcCCeEEE-ECCcCCHH--HHHHcCCcEEEC
Confidence 43 344444 33322222 456669997765
No 102
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.61 E-value=2.4 Score=32.06 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=63.4
Q ss_pred HHHHHHhcCC-eEEEECCHHHHHHHHHh-cCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHH
Q 029986 33 LEKMLRKCLY-EVTKCNRAEIALDMLRM-SKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVT 110 (184)
Q Consensus 33 l~~~L~~~~~-~v~~~~~~~~~~~~l~~-~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~ 110 (184)
+...|.+.+. -+....+.++++...+. .+.+.+ ++.+.+...++.+.++.+++..+--+|-..+-.+.+.+..+++
T Consensus 8 ~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~ 85 (212)
T PRK05718 8 IEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIE 85 (212)
T ss_pred HHHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHH
Confidence 3345555543 45566778888877753 234466 5555666778999999996433223344444455688889999
Q ss_pred cCCCceEeCCCCHHHHHHHHHH
Q 029986 111 HGACNYLLKPIRIKELRNIWQH 132 (184)
Q Consensus 111 ~ga~~~l~kP~~~~~l~~~l~~ 132 (184)
+||+ |++-|.-..++.+...+
T Consensus 86 aGA~-FivsP~~~~~vi~~a~~ 106 (212)
T PRK05718 86 AGAQ-FIVSPGLTPPLLKAAQE 106 (212)
T ss_pred cCCC-EEECCCCCHHHHHHHHH
Confidence 9998 88888876677665443
No 103
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=93.01 E-value=1.3 Score=34.51 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=44.8
Q ss_pred CHHHHHHHhccc-CCCCEEEEEccCC------hHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 77 DGFKLHEQVGLE-MDLPVIMMSVDGC------TQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 77 ~g~~l~~~l~~~-~~~~iIi~~~~~~------~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
..+++++.+++. .++|+++++-... ..+...+.++|+++.+......++....+..+.+.
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~ 139 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKH 139 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHC
Confidence 346677777654 6789876654332 46788899999999999988888888887777654
No 104
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=92.99 E-value=2.2 Score=33.53 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCe--EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc--cCCCCEEEEEccCChHHHHH
Q 029986 32 ILEKMLRKCLYE--VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL--EMDLPVIMMSVDGCTQDVMK 107 (184)
Q Consensus 32 ~l~~~L~~~~~~--v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~--~~~~~iIi~~~~~~~~~~~~ 107 (184)
.+++.|+.-... ++.........+.+. ..++|-|++|.+....+.-++...++. ...++.++=....+...+.+
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a--~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAA--TSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHH--HcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHH
Confidence 355666553222 222222344555554 456999999999998887777666642 23343343345566788899
Q ss_pred HHHcCCCceEeCCC-CHHHHHHHHHHH
Q 029986 108 GVTHGACNYLLKPI-RIKELRNIWQHV 133 (184)
Q Consensus 108 a~~~ga~~~l~kP~-~~~~l~~~l~~~ 133 (184)
+++.||.+.+..-+ +.++...+++..
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 99999999998655 455666665544
No 105
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=92.85 E-value=2.1 Score=33.41 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCeE--EEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc--CCCCEEEEEccCChHHHHH
Q 029986 32 ILEKMLRKCLYEV--TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE--MDLPVIMMSVDGCTQDVMK 107 (184)
Q Consensus 32 ~l~~~L~~~~~~v--~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~--~~~~iIi~~~~~~~~~~~~ 107 (184)
.+++.|..-...+ +.........+.+. ..++|.|++|.+....+.-++...++.. ..++.++=....++..+.+
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a--~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r 86 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLG--LAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHH--hcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 4666666532222 22222344555554 4669999999999988877776666422 3344444445567888999
Q ss_pred HHHcCCCceEeCCC-CHHHHHHHHHHH
Q 029986 108 GVTHGACNYLLKPI-RIKELRNIWQHV 133 (184)
Q Consensus 108 a~~~ga~~~l~kP~-~~~~l~~~l~~~ 133 (184)
+++.|+++.+..-+ +.++..++++..
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 99999999987544 566666666654
No 106
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=92.47 E-value=0.93 Score=35.09 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=54.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEEEE
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIMMS 97 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi~~ 97 (184)
.|.+.-.++...+.+...|....|.+..+.+.++.++.+.......|++++.... ....+..++... --.|+|++.
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~---~~~~~~~~L~e~g~LLPaVil~ 78 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSP---LLPPLFNQLYEQGILLPAVILG 78 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTS---TTHHHHHHHHHCT----EEEES
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCC---CcHHHHHHHHHcCccccEEEEe
Confidence 4677778899999999999988899999999999999997556679999998743 344566777533 467998886
Q ss_pred c
Q 029986 98 V 98 (184)
Q Consensus 98 ~ 98 (184)
.
T Consensus 79 ~ 79 (283)
T PF07688_consen 79 S 79 (283)
T ss_dssp -
T ss_pred c
Confidence 5
No 107
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=92.25 E-value=3 Score=29.49 Aligned_cols=113 Identities=16% Similarity=0.053 Sum_probs=74.7
Q ss_pred CeEEE----EeCCHHHHHHHHHHHHhcCCeEE---EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHH----HHHhc
Q 029986 18 LRVLV----VDDDPIWLRILEKMLRKCLYEVT---KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKL----HEQVG 86 (184)
Q Consensus 18 ~~Ili----vdd~~~~~~~l~~~L~~~~~~v~---~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l----~~~l~ 86 (184)
.||++ .|.+..-.+.+.+.|++.|++|. .+.+.+++.+..- +...|+|.+... .....++ ++.++
T Consensus 13 prvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~--~~dv~vIgvSsl--~g~h~~l~~~lve~lr 88 (143)
T COG2185 13 PRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAV--EEDVDVIGVSSL--DGGHLTLVPGLVEALR 88 (143)
T ss_pred ceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHH--hcCCCEEEEEec--cchHHHHHHHHHHHHH
Confidence 35554 47888889999999999999987 4567778777764 455788887543 3333444 44444
Q ss_pred ccCCCCEE-EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 87 LEMDLPVI-MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 87 ~~~~~~iI-i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
+..--.|+ +....-.++......+.|++.++..-....+...-+...+
T Consensus 89 e~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 89 EAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred HhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 43322344 4444555566777888999999987777666655544433
No 108
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=92.20 E-value=3.3 Score=32.15 Aligned_cols=81 Identities=14% Similarity=0.095 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc--CCCCEEEEEccCChHHHHHHHHcCCCceEeCCC-CHHHHH
Q 029986 51 EIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE--MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI-RIKELR 127 (184)
Q Consensus 51 ~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~--~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~-~~~~l~ 127 (184)
....+.+. ..++|-|++|.+....+.-++...++.. ..++.++=....+...+.++++.|+++.+..-+ +.++..
T Consensus 23 p~~~e~~a--~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~ 100 (249)
T TIGR03239 23 PITTEVLG--LAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAE 100 (249)
T ss_pred cHHHHHHH--hcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHH
Confidence 44555554 4569999999999988877776666422 334433333556678899999999999987544 566666
Q ss_pred HHHHHH
Q 029986 128 NIWQHV 133 (184)
Q Consensus 128 ~~l~~~ 133 (184)
++++..
T Consensus 101 ~~v~a~ 106 (249)
T TIGR03239 101 RAVAAT 106 (249)
T ss_pred HHHHHc
Confidence 666654
No 109
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=91.90 E-value=4.3 Score=30.55 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=53.6
Q ss_pred EEEECCHHHHHHHHHh-cCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCC
Q 029986 44 VTKCNRAEIALDMLRM-SKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122 (184)
Q Consensus 44 v~~~~~~~~~~~~l~~-~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~ 122 (184)
+....+.+++.+..+. .+.+.. ++.+.+...+..+.++++++..+--+|-..+=.+.+.+..+.++||+ |+..|..
T Consensus 13 Vlr~~~~e~a~~~~~al~~~Gi~--~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~-FivsP~~ 89 (204)
T TIGR01182 13 VIRIDDVDDALPLAKALIEGGLR--VLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQ-FIVSPGL 89 (204)
T ss_pred EEecCCHHHHHHHHHHHHHcCCC--EEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCC-EEECCCC
Confidence 4445566666665542 234455 44445556678888888864322223334445567888899999998 8888888
Q ss_pred HHHHHHHHH
Q 029986 123 IKELRNIWQ 131 (184)
Q Consensus 123 ~~~l~~~l~ 131 (184)
..++.+..+
T Consensus 90 ~~~v~~~~~ 98 (204)
T TIGR01182 90 TPELAKHAQ 98 (204)
T ss_pred CHHHHHHHH
Confidence 777766554
No 110
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=91.69 E-value=4.1 Score=30.74 Aligned_cols=86 Identities=21% Similarity=0.273 Sum_probs=56.4
Q ss_pred HHHHHHHHHh-cCCeE-EEECCHHHHHHHHHhcCCCccEEEEeCC-------CCCCCHHHHHHHhcccCCCCEEEEEccC
Q 029986 30 LRILEKMLRK-CLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVH-------MPDMDGFKLHEQVGLEMDLPVIMMSVDG 100 (184)
Q Consensus 30 ~~~l~~~L~~-~~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~-------l~~~~g~~l~~~l~~~~~~~iIi~~~~~ 100 (184)
...+....++ .+..+ ..+.+.+++.... ..++|++.+... .....+++++++++...++|++....-.
T Consensus 107 ~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~---~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~ 183 (221)
T PRK01130 107 LAELVKRIKEYPGQLLMADCSTLEEGLAAQ---KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRIN 183 (221)
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHH---HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCC
Confidence 3344445555 45443 4566677775543 356898866421 1123346788888655578999887777
Q ss_pred ChHHHHHHHHcCCCceEe
Q 029986 101 CTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 101 ~~~~~~~a~~~ga~~~l~ 118 (184)
+.+.+..+++.|+++++.
T Consensus 184 t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 184 TPEQAKKALELGAHAVVV 201 (221)
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 789999999999998864
No 111
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=91.04 E-value=5.3 Score=35.89 Aligned_cols=108 Identities=10% Similarity=-0.084 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHhcCCeEEE---ECCHHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHhcccCCCCE-EEEEc
Q 029986 25 DDPIWLRILEKMLRKCLYEVTK---CNRAEIALDMLRMSKNGYDIVISDVHMPDM--DGFKLHEQVGLEMDLPV-IMMSV 98 (184)
Q Consensus 25 d~~~~~~~l~~~L~~~~~~v~~---~~~~~~~~~~l~~~~~~~dlvilD~~l~~~--~g~~l~~~l~~~~~~~i-Ii~~~ 98 (184)
.+..-...+..+|...|++|.. +.+.+++.+... +..+|+|.+-..+... ..-.+++.|+....-.+ +++..
T Consensus 594 ~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~--~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG 671 (714)
T PRK09426 594 GHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAV--ENDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGG 671 (714)
T ss_pred chhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHH--HcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 4555666677888888999853 345677777776 4568888875443321 23345666654421124 44443
Q ss_pred cCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 99 DGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 99 ~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
..-++....+.++|+++|+..-.+..++...+...+
T Consensus 672 ~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l 707 (714)
T PRK09426 672 VIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELL 707 (714)
T ss_pred CCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHH
Confidence 312344456788999999998888887776666554
No 112
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=90.91 E-value=5.2 Score=29.79 Aligned_cols=95 Identities=18% Similarity=0.135 Sum_probs=59.0
Q ss_pred eEEEE----eCCHHHHHHHHHHHHhcCCeEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHhccc-
Q 029986 19 RVLVV----DDDPIWLRILEKMLRKCLYEVTKCN---RAEIALDMLRMSKNGYDIVISDVHMPDMD--GFKLHEQVGLE- 88 (184)
Q Consensus 19 ~Iliv----dd~~~~~~~l~~~L~~~~~~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~~--g~~l~~~l~~~- 88 (184)
+|++. |.+..=...+..+|+..||++.... ..++..+.+. +..||+|-+...++... --++++.+++.
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~--~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~ 163 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK--KEKPLMLTGSALMTTTMYGQKDINDKLKEEG 163 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH--HcCCCEEEEccccccCHHHHHHHHHHHHHcC
Confidence 55544 3455556667788888999988544 4567777776 56799999988776542 23455566543
Q ss_pred -C-CCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 89 -M-DLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 89 -~-~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+ +++| ++....-.. .-+...|||.|-.
T Consensus 164 ~~~~v~i-~vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 164 YRDSVKF-MVGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred CCCCCEE-EEEChhcCH--HHHHHhCCcEEeC
Confidence 2 2444 444332222 2355679998864
No 113
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=90.81 E-value=5.7 Score=32.89 Aligned_cols=111 Identities=13% Similarity=0.110 Sum_probs=63.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeE---------------EEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHH
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEV---------------TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKL 81 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v---------------~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l 81 (184)
+.+++|+.+.+.....+.+.+++.|... .......+...++. . .|++++--.+...-|..+
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~--~--aDi~~v~~S~~e~~g~~~ 337 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYA--I--ADIAFVGGSLVKRGGHNP 337 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHH--h--CCEEEECCCcCCCCCCCH
Confidence 5678888888766566777777666532 22222334444443 1 588777433323334445
Q ss_pred HHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 82 HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 82 ~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
++-+. ..+|||.-....+.....+.+. ..+++..|-+.++|.+.+..++.
T Consensus 338 lEAma--~G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 338 LEPAA--FGVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHH--hCCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhc
Confidence 55442 4678886332233344333332 22566668889999999988865
No 114
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=90.79 E-value=4.1 Score=28.27 Aligned_cols=103 Identities=11% Similarity=0.018 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEE---CCHHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHhccc-C-CCCEEEEE
Q 029986 25 DDPIWLRILEKMLRKCLYEVTKC---NRAEIALDMLRMSKNGYDIVISDVHMPDMD--GFKLHEQVGLE-M-DLPVIMMS 97 (184)
Q Consensus 25 d~~~~~~~l~~~L~~~~~~v~~~---~~~~~~~~~l~~~~~~~dlvilD~~l~~~~--g~~l~~~l~~~-~-~~~iIi~~ 97 (184)
-+..-...+..+|+..||+|... -..++..+... +..+|+|-+..-|...- .-++.+.++.. . +++ +++.
T Consensus 11 ~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~--~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~-vivG 87 (128)
T cd02072 11 CHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAI--ETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDIL-LYVG 87 (128)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCe-EEEE
Confidence 34445567888999999998743 45677777776 45699999987665432 23455566533 2 433 4444
Q ss_pred ccC-----C-hHHHHHHHHcCCCceEeCCCCHHHHHHHH
Q 029986 98 VDG-----C-TQDVMKGVTHGACNYLLKPIRIKELRNIW 130 (184)
Q Consensus 98 ~~~-----~-~~~~~~a~~~ga~~~l~kP~~~~~l~~~l 130 (184)
... + .+...++.+.|++..+...-+.+++...+
T Consensus 88 G~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l 126 (128)
T cd02072 88 GNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADL 126 (128)
T ss_pred CCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHH
Confidence 331 1 23445688899999998877777776554
No 115
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=90.64 E-value=1.8 Score=33.33 Aligned_cols=60 Identities=10% Similarity=0.190 Sum_probs=43.4
Q ss_pred CHHHHHHHhcccCCCCEEEEEccCC------hHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 77 DGFKLHEQVGLEMDLPVIMMSVDGC------TQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 77 ~g~~l~~~l~~~~~~~iIi~~~~~~------~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
.++++++.++...++|+++++-... ...+..+.++|+++.+...+..+++...+..+.+.
T Consensus 63 ~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~ 128 (242)
T cd04724 63 DVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEY 128 (242)
T ss_pred HHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHc
Confidence 3566777776555788877654332 55677889999999999777778887777777654
No 116
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=90.44 E-value=6.5 Score=30.44 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc--CCCCEEEEEccCChHHHHHHHHcCCCceEe-CCCCHHHHH
Q 029986 51 EIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE--MDLPVIMMSVDGCTQDVMKGVTHGACNYLL-KPIRIKELR 127 (184)
Q Consensus 51 ~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~--~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~-kP~~~~~l~ 127 (184)
....+.+. ..++|.|++|++....+.-++...++.. ....+++=....+...+..+++.|+++.+. |--+.++..
T Consensus 23 p~~~e~~~--~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~ 100 (249)
T TIGR02311 23 PYAAEICA--GAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLDIGAQTLLVPMIETAEQAE 100 (249)
T ss_pred cHHHHHHH--hcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhCCCCCEEEecCcCCHHHHH
Confidence 44555554 4569999999998887776666655432 233333333445667889999999999874 455777877
Q ss_pred HHHHHHH
Q 029986 128 NIWQHVA 134 (184)
Q Consensus 128 ~~l~~~~ 134 (184)
++++.+.
T Consensus 101 ~~v~~~~ 107 (249)
T TIGR02311 101 AAVAATR 107 (249)
T ss_pred HHHHHcC
Confidence 7777654
No 117
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=90.39 E-value=5.8 Score=29.40 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=48.2
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEeCCCCCC--------CHHHHHHHhcccC-CCCEEEEEccCChHHHHHHHHcCCCce
Q 029986 46 KCNRAEIALDMLRMSKNGYDIVISDVHMPDM--------DGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~--------~g~~l~~~l~~~~-~~~iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
.+++..++.+... .++|.|.+.-..|.. .|++.+++++... ++||++...- +.+.+..+++.|++++
T Consensus 110 ~~~t~~e~~~a~~---~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv 185 (212)
T PRK00043 110 STHTLEEAAAALA---AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGV 185 (212)
T ss_pred eCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 4555566666543 568999987555533 3578888885443 4888877654 5788889999999998
Q ss_pred Ee
Q 029986 117 LL 118 (184)
Q Consensus 117 l~ 118 (184)
..
T Consensus 186 ~~ 187 (212)
T PRK00043 186 AV 187 (212)
T ss_pred EE
Confidence 74
No 118
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=89.97 E-value=3.5 Score=29.91 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=51.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc--CCeEEEEC-------CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC--LYEVTKCN-------RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL 87 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~--~~~v~~~~-------~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~ 87 (184)
+.+|.++...+...+.+...|++. +..+..+. +..+.++.+. ...||+|++-+.+|..+-+ +...+.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~--~~~pdiv~vglG~PkQE~~--~~~~~~ 121 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERIN--ASGADILFVGLGAPKQELW--IARHKD 121 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHH--HcCCCEEEEECCCCHHHHH--HHHHHH
Confidence 578999999999999999888876 45554321 1223455555 5569999999999987643 444443
Q ss_pred cCCCCEEEE
Q 029986 88 EMDLPVIMM 96 (184)
Q Consensus 88 ~~~~~iIi~ 96 (184)
.-+.++++-
T Consensus 122 ~l~~~v~~~ 130 (171)
T cd06533 122 RLPVPVAIG 130 (171)
T ss_pred HCCCCEEEE
Confidence 334555554
No 119
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=89.77 E-value=3.1 Score=32.86 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=59.4
Q ss_pred EEEEeCCHHHHH---HHHHHHHh---c---CCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCC
Q 029986 20 VLVVDDDPIWLR---ILEKMLRK---C---LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMD 90 (184)
Q Consensus 20 Ilivdd~~~~~~---~l~~~L~~---~---~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~ 90 (184)
|+|-|.|-.... .+...+.. . .-....+.+.+++.+.+. .++|+|++| +|+..+-.+.++.++....
T Consensus 159 ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~---~GaDiI~lD-n~~~e~l~~~v~~l~~~~~ 234 (277)
T TIGR01334 159 LLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQ---ASPDILQLD-KFTPQQLHHLHERLKFFDH 234 (277)
T ss_pred heehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHH---cCcCEEEEC-CCCHHHHHHHHHHHhccCC
Confidence 666666655443 34444432 1 123446789999999875 559999999 3444444445555543223
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
...+-.+..-+.+.+......|++-+.
T Consensus 235 ~~~leasGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 235 IPTLAAAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred CEEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 335666777788888888899988654
No 120
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=89.57 E-value=2.3 Score=33.20 Aligned_cols=59 Identities=12% Similarity=0.277 Sum_probs=44.6
Q ss_pred HHHHHHHhc-ccCCCCEEEEEcc------CChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 78 GFKLHEQVG-LEMDLPVIMMSVD------GCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 78 g~~l~~~l~-~~~~~~iIi~~~~------~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
.++++++++ ..+++|+++++-. .-+.....+.++|+++.+.-.+..++....+..+.+.
T Consensus 76 ~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~ 141 (258)
T PRK13111 76 VFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKH 141 (258)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHc
Confidence 466777776 4568898877632 3345678899999999999999988888887776553
No 121
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=89.51 E-value=2.7 Score=34.01 Aligned_cols=58 Identities=14% Similarity=-0.050 Sum_probs=42.6
Q ss_pred CCccEEEEeCCCCCCC-HHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 62 NGYDIVISDVHMPDMD-GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 62 ~~~dlvilD~~l~~~~-g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
..+|+|++|+...... -++.+++++...+-+.|+-.+-.+.+.+..+.++||+...+-
T Consensus 120 ~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 120 PQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 3589999999765443 366788887543345555555778899999999999988644
No 122
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.47 E-value=7.4 Score=29.21 Aligned_cols=63 Identities=10% Similarity=0.131 Sum_probs=40.4
Q ss_pred EEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHH
Q 029986 68 ISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131 (184)
Q Consensus 68 ilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~ 131 (184)
.+.+.|...+.++.++.+++..+--+|=..+=-+.+.+..+.++||. |++.|.-..++.+..+
T Consensus 32 ~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~vi~~a~ 94 (201)
T PRK06015 32 AIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQELLAAAN 94 (201)
T ss_pred EEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHHHHH
Confidence 44555556667777777753322223333344567788888899888 8888887777766554
No 123
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=89.16 E-value=2.1 Score=33.56 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=44.4
Q ss_pred HHHHHHHhcccCCCCEEEEEcc------CChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 78 GFKLHEQVGLEMDLPVIMMSVD------GCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 78 g~~l~~~l~~~~~~~iIi~~~~------~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
.++++++++....+|+++++-. .-+....++.++|+++.+...+..++.......+.+.
T Consensus 79 ~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~ 143 (263)
T CHL00200 79 ILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLY 143 (263)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHc
Confidence 4667777775578898877533 2245678899999999999999888887777776554
No 124
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=89.07 E-value=8.4 Score=30.86 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=57.9
Q ss_pred HHHHHHhcCCeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCC-----CCCHHHHHHHhcccCCCCEEEEEccCChHHHH
Q 029986 33 LEKMLRKCLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMP-----DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVM 106 (184)
Q Consensus 33 l~~~L~~~~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~-----~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~ 106 (184)
+-..++..|..+ ..+.+.+.+..... .++|.|++.-.-. ....+.+++++....++|||.-..-.+...+.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~---~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~ 177 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEK---AGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMA 177 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHH---cCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHH
Confidence 445566666654 35677777766653 5689999854322 22357888888655578998887777788899
Q ss_pred HHHHcCCCceE
Q 029986 107 KGVTHGACNYL 117 (184)
Q Consensus 107 ~a~~~ga~~~l 117 (184)
.++..||++..
T Consensus 178 ~al~~GA~gV~ 188 (307)
T TIGR03151 178 AAFALGAEAVQ 188 (307)
T ss_pred HHHHcCCCEee
Confidence 99999999875
No 125
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=89.05 E-value=6.4 Score=30.90 Aligned_cols=104 Identities=23% Similarity=0.290 Sum_probs=63.0
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE-----EECCHHHHHHHHHhcCCCccEEEEeC---CCCC-CCHHH----
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVT-----KCNRAEIALDMLRMSKNGYDIVISDV---HMPD-MDGFK---- 80 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~-----~~~~~~~~~~~l~~~~~~~dlvilD~---~l~~-~~g~~---- 80 (184)
|..+-+||=+|.|+...+.....-++.+..+. .-.-.+...+++. +..|||+++-- ..-+ .+-.+
T Consensus 101 f~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~--~~~PDIlViTGHD~~~K~~~d~~dl~~Y 178 (283)
T TIGR02855 101 FGMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIE--EVRPDILVITGHDAYSKNKGNYMDLNAY 178 (283)
T ss_pred CCCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHH--HhCCCEEEEeCchhhhcCCCChhhhhhh
Confidence 44344899999999988887766676654433 3333455566665 56699999832 2211 11111
Q ss_pred -----HHHHh---ccc-CCC-CEEEEEccCChHHHHHHHHcCCCceEeCCC
Q 029986 81 -----LHEQV---GLE-MDL-PVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121 (184)
Q Consensus 81 -----l~~~l---~~~-~~~-~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~ 121 (184)
|++.+ |.. ++. -++|++ .++.......+++||+ |-+.|-
T Consensus 179 rnSkyFVeaVk~aR~y~~~~D~LVIFA-GACQS~yEall~AGAN-FASSP~ 227 (283)
T TIGR02855 179 RHSKYFVETVREARKYVPSLDQLVIFA-GACQSHFESLIRAGAN-FASSPS 227 (283)
T ss_pred hhhHHHHHHHHHHHhcCCCcccEEEEc-chhHHHHHHHHHcCcc-ccCCcc
Confidence 33333 322 333 255554 4567778888999998 877774
No 126
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=88.89 E-value=2.7 Score=31.15 Aligned_cols=75 Identities=19% Similarity=0.289 Sum_probs=51.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCC--CCCC--HHHHHHHhcccCCCCE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM--PDMD--GFKLHEQVGLEMDLPV 93 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l--~~~~--g~~l~~~l~~~~~~~i 93 (184)
++||++|.-...--.|.++|.+.|.++....+.......+. ...||.|++.-.- |... ..++++++ ...+||
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~--~~~pd~iviSPGPG~P~d~G~~~~~i~~~--~~~~Pi 77 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIE--ALKPDAIVISPGPGTPKDAGISLELIRRF--AGRIPI 77 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHh--hcCCCEEEEcCCCCChHHcchHHHHHHHh--cCCCCE
Confidence 57999999999999999999999887776665433333443 3458999997643 3222 34455555 345788
Q ss_pred EEE
Q 029986 94 IMM 96 (184)
Q Consensus 94 Ii~ 96 (184)
+-+
T Consensus 78 LGV 80 (191)
T COG0512 78 LGV 80 (191)
T ss_pred EEE
Confidence 765
No 127
>PLN02591 tryptophan synthase
Probab=88.89 E-value=2.4 Score=32.95 Aligned_cols=60 Identities=10% Similarity=0.235 Sum_probs=44.9
Q ss_pred CHHHHHHHhcccCCCCEEEEEcc------CChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 77 DGFKLHEQVGLEMDLPVIMMSVD------GCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 77 ~g~~l~~~l~~~~~~~iIi~~~~------~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+.++++++++...++|+++++-. .-+....++.++|+++.+.-.+..++.......+.+.
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~ 130 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKN 130 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHc
Confidence 35777888875567898877532 2234577889999999999999988888877776554
No 128
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.82 E-value=4.6 Score=32.13 Aligned_cols=105 Identities=15% Similarity=0.202 Sum_probs=60.8
Q ss_pred CeEEEEeC--CHH---HHHHHHHHHHhcCCeEEEECCHHHHHHH-------------HHhcCCCccEEEEeCCCCCCCHH
Q 029986 18 LRVLVVDD--DPI---WLRILEKMLRKCLYEVTKCNRAEIALDM-------------LRMSKNGYDIVISDVHMPDMDGF 79 (184)
Q Consensus 18 ~~Ilivdd--~~~---~~~~l~~~L~~~~~~v~~~~~~~~~~~~-------------l~~~~~~~dlvilD~~l~~~~g~ 79 (184)
|+|.|+-. .+. ....+..+|.+.|+++.........+.. .......+|++|+ -++||
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDG- 75 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDG- 75 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcH-
Confidence 46666632 233 3445566676778887764432221110 0111124688777 36777
Q ss_pred HHHHHhcc--cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 80 KLHEQVGL--EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 80 ~l~~~l~~--~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
.+++..+. ...+||+-+- .|-.+|+. .++.+++...+..++++.....
T Consensus 76 T~L~aa~~~~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~~~i~ 125 (292)
T PRK01911 76 TFLRTATYVGNSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGDYTIE 125 (292)
T ss_pred HHHHHHHHhcCCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCCceEE
Confidence 34444432 2367877663 36678887 6788999999999998765433
No 129
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=88.70 E-value=7.5 Score=28.28 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=55.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEEC-------CHHHHHHHHHhcCCCccEEEEeCC-C-CCCCHHHHHHHhcccCC
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCN-------RAEIALDMLRMSKNGYDIVISDVH-M-PDMDGFKLHEQVGLEMD 90 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~~~~-------~~~~~~~~l~~~~~~~dlvilD~~-l-~~~~g~~l~~~l~~~~~ 90 (184)
|+|-|.|...+..++..-++.|..+.+.+ ++++..+++......|=+|++|-. . ..+.|-+.++.+...+.
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 55666777777777777777888877654 789999999876666777777653 2 23567788888866666
Q ss_pred CC---EEEEEcc
Q 029986 91 LP---VIMMSVD 99 (184)
Q Consensus 91 ~~---iIi~~~~ 99 (184)
+- +|.+++.
T Consensus 83 IeVLG~iAVASn 94 (180)
T PF14097_consen 83 IEVLGAIAVASN 94 (180)
T ss_pred ceEEEEEEEEec
Confidence 54 4555543
No 130
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=88.68 E-value=7.4 Score=28.22 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=52.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc--CCeEEEECC-------HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC--LYEVTKCNR-------AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL 87 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~--~~~v~~~~~-------~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~ 87 (184)
+.+|.++...+...+.+...|+.. +..+.-+.+ .++.++.+. ...||+|++-+..|..+- ++...+.
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~--~~~pdiv~vglG~PkQE~--~~~~~~~ 123 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRIN--ASGPDIVFVGLGAPKQER--WIARHRQ 123 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHH--HcCCCEEEEECCCCHHHH--HHHHHHH
Confidence 568999999999999999999876 555553332 344555555 566999999998887663 4555544
Q ss_pred cCCCCEEEE
Q 029986 88 EMDLPVIMM 96 (184)
Q Consensus 88 ~~~~~iIi~ 96 (184)
.-+.++++-
T Consensus 124 ~l~~~v~i~ 132 (172)
T PF03808_consen 124 RLPAGVIIG 132 (172)
T ss_pred HCCCCEEEE
Confidence 444554443
No 131
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=88.66 E-value=6 Score=31.20 Aligned_cols=106 Identities=18% Similarity=0.238 Sum_probs=63.0
Q ss_pred ccCCCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE--EECC---HHHHHHHHHhcCCCccEEEEeCC---CCCC------C
Q 029986 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVT--KCNR---AEIALDMLRMSKNGYDIVISDVH---MPDM------D 77 (184)
Q Consensus 12 ~~~~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~--~~~~---~~~~~~~l~~~~~~~dlvilD~~---l~~~------~ 77 (184)
.-|..+-|||=+|.|+...+.....-++.|..+. .+.. .+...+++. +..|||+++--+ +-+. +
T Consensus 100 ~~F~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~--~~~PDIlViTGHD~~~K~~~d~~dl~ 177 (287)
T PF05582_consen 100 EYFERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLE--EYRPDILVITGHDGYLKNKKDYSDLN 177 (287)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHH--HcCCCEEEEeCchhhhcCCCChhhhh
Confidence 3344455899999999988887777777765443 2332 333445554 566999998322 1111 1
Q ss_pred H----HHHHHHh---ccc-CCCC-EEEEEccCChHHHHHHHHcCCCceEeCCC
Q 029986 78 G----FKLHEQV---GLE-MDLP-VIMMSVDGCTQDVMKGVTHGACNYLLKPI 121 (184)
Q Consensus 78 g----~~l~~~l---~~~-~~~~-iIi~~~~~~~~~~~~a~~~ga~~~l~kP~ 121 (184)
. --|++.+ |.. ++.- .+|++ .++.......+++||+ |-+.|-
T Consensus 178 ~YrnSkyFVeaV~~aR~~ep~~D~LVIfA-GACQS~fEall~AGAN-FASSP~ 228 (287)
T PF05582_consen 178 NYRNSKYFVEAVKEARKYEPNLDDLVIFA-GACQSHFEALLEAGAN-FASSPK 228 (287)
T ss_pred hhhccHHHHHHHHHHHhcCCCcccEEEEc-chhHHHHHHHHHcCcc-ccCCcc
Confidence 1 1134433 322 3332 44454 4567777888999998 877764
No 132
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.62 E-value=11 Score=29.90 Aligned_cols=93 Identities=18% Similarity=0.158 Sum_probs=59.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhc---C---CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccC--CC
Q 029986 20 VLVVDDDPIWLRILEKMLRKC---L---YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEM--DL 91 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~---~---~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~--~~ 91 (184)
|+|-|.+-... .+...+... . --...+.+.+++.+.+. .++|+|.+|-..|. +--+..+.++... +.
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~---agaDiI~LDn~~~e-~l~~~v~~l~~~~~~~~ 231 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAK---AGADIIMLDNMTPE-EIREVIEALKREGLRER 231 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH---cCcCEEEECCCCHH-HHHHHHHHHHhcCcCCC
Confidence 78888886655 666666532 1 13346889999999885 55899999954322 2223334443221 23
Q ss_pred CEEEEEccCChHHHHHHHHcCCCceE
Q 029986 92 PVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
..+..+..-+.+.+....+.|+|.+-
T Consensus 232 ~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 232 VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 34555667778888888999998554
No 133
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=87.71 E-value=9.3 Score=29.42 Aligned_cols=96 Identities=18% Similarity=0.137 Sum_probs=57.2
Q ss_pred HHHHHhcCCeEEEEC--CHHHHHHHHHhcCCCccEEEEeCCCCCCCH-----HHHHHHhcccCCCCEEEEEccCChHHHH
Q 029986 34 EKMLRKCLYEVTKCN--RAEIALDMLRMSKNGYDIVISDVHMPDMDG-----FKLHEQVGLEMDLPVIMMSVDGCTQDVM 106 (184)
Q Consensus 34 ~~~L~~~~~~v~~~~--~~~~~~~~l~~~~~~~dlvilD~~l~~~~g-----~~l~~~l~~~~~~~iIi~~~~~~~~~~~ 106 (184)
.+.|-+.||.|..+. |..-|.++.. .+.. .++-+.-|-++| -..++.+....++|||+=+.-..+..+.
T Consensus 116 ae~Lv~eGF~VlPY~~~D~v~akrL~d---~Gca-avMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa 191 (247)
T PF05690_consen 116 AEILVKEGFVVLPYCTDDPVLAKRLED---AGCA-AVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAA 191 (247)
T ss_dssp HHHHHHTT-EEEEEE-S-HHHHHHHHH---TT-S-EBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES---SHHHHH
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHHH---CCCC-EEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHH
Confidence 356667799987544 4444544433 3333 355566665554 2356666555689999988888899999
Q ss_pred HHHHcCCCceEe-----CCCCHHHHHHHHHHH
Q 029986 107 KGVTHGACNYLL-----KPIRIKELRNIWQHV 133 (184)
Q Consensus 107 ~a~~~ga~~~l~-----kP~~~~~l~~~l~~~ 133 (184)
.+++.|+++.++ +--++-.+.+++...
T Consensus 192 ~AMElG~daVLvNTAiA~A~dPv~MA~Af~~A 223 (247)
T PF05690_consen 192 QAMELGADAVLVNTAIAKAKDPVAMARAFKLA 223 (247)
T ss_dssp HHHHTT-SEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHcCCceeehhhHHhccCCHHHHHHHHHHH
Confidence 999999999985 333455555555444
No 134
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=87.31 E-value=7.2 Score=26.51 Aligned_cols=106 Identities=8% Similarity=0.062 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCeEEEEC--CHHHHHHHHHhcCCCccEEEEeCCCCCC-CHHHHHHHhccc-CCCCEEEEEccCChHH
Q 029986 29 WLRILEKMLRKCLYEVTKCN--RAEIALDMLRMSKNGYDIVISDVHMPDM-DGFKLHEQVGLE-MDLPVIMMSVDGCTQD 104 (184)
Q Consensus 29 ~~~~l~~~L~~~~~~v~~~~--~~~~~~~~l~~~~~~~dlvilD~~l~~~-~g~~l~~~l~~~-~~~~iIi~~~~~~~~~ 104 (184)
....+..+|.+.|+++.... ..++..+.+.. ...||+|.+....... ...++++.+++. ++++|++=....+ ..
T Consensus 4 gl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~-~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t-~~ 81 (127)
T cd02068 4 GLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKE-LLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHAT-FF 81 (127)
T ss_pred hHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHH-hcCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchh-hC
Confidence 34567788888887765433 45556666542 1569999998754443 345577777643 5555554332222 12
Q ss_pred HHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 105 VMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 105 ~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
....+.....||+..--...-+...++.+.++
T Consensus 82 p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~~g 113 (127)
T cd02068 82 PEEILEEPGVDFVVIGEGEETFLKLLEELEEG 113 (127)
T ss_pred HHHHhcCCCCCEEEECCcHHHHHHHHHHHHcC
Confidence 22223344456877766666777777776554
No 135
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=87.27 E-value=9.2 Score=27.68 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=47.0
Q ss_pred ECCHHHHHHHHHhcCCCccEEEEeCCCCC--------CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 47 CNRAEIALDMLRMSKNGYDIVISDVHMPD--------MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~dlvilD~~l~~--------~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+++..++.+... .++|.+++....|. ..+.+.+++++...++|+++...- +.+.+..+...|++++..
T Consensus 102 ~~t~~~~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 102 THSLEEALRAEE---LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 445556555543 45899998755442 345677887765567888887654 467888999999998864
No 136
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.21 E-value=7.1 Score=31.04 Aligned_cols=94 Identities=13% Similarity=0.050 Sum_probs=56.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhc----C--CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCE
Q 029986 20 VLVVDDDPIWLRILEKMLRKC----L--YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPV 93 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~----~--~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~i 93 (184)
|+|=|.+-...-.+...+++. . -....+.+.+++.+.+. .++|+|.+| +|.-.+--+.++.++.......
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~---~gaDiI~LD-nm~~e~vk~av~~~~~~~~~v~ 248 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLA---EGAELVLLD-NFPVWQTQEAVQRRDARAPTVL 248 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHH---cCCCEEEeC-CCCHHHHHHHHHHHhccCCCEE
Confidence 666666644443444444322 2 23457889999999875 558999999 4432222223333332332335
Q ss_pred EEEEccCChHHHHHHHHcCCCceE
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l 117 (184)
+..+..-+.+.+....+.|+|.+-
T Consensus 249 ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 249 LESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEE
Confidence 556667778888888999998553
No 137
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=87.07 E-value=4.7 Score=29.34 Aligned_cols=94 Identities=17% Similarity=0.101 Sum_probs=57.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhc------CC-eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCC
Q 029986 20 VLVVDDDPIWLRILEKMLRKC------LY-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLP 92 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~------~~-~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~ 92 (184)
++|=|.+-.....+...++.. .. -...+.+.+++.+.+. .++|+|.+|-.-| .+--+.++.++......
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~---~g~d~I~lD~~~~-~~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALE---AGADIIMLDNMSP-EDLKEAVEELRELNPRV 128 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH---TT-SEEEEES-CH-HHHHHHHHHHHHHTTTS
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH---hCCCEEEecCcCH-HHHHHHHHHHhhcCCcE
Confidence 666665555554455544432 22 3447888999999886 4589999996533 22233444444444446
Q ss_pred EEEEEccCChHHHHHHHHcCCCceE
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
.|..+..-+.+.+.+..+.|+|.+-
T Consensus 129 ~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 129 KIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp EEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 7777888888888898999987654
No 138
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.98 E-value=5.9 Score=31.22 Aligned_cols=95 Identities=13% Similarity=0.116 Sum_probs=56.9
Q ss_pred EEEEeCCHHHHHHHHHHHHh----cCC---eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCC
Q 029986 20 VLVVDDDPIWLRILEKMLRK----CLY---EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLP 92 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~----~~~---~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~ 92 (184)
|+|=|.+-.....+...++. ... -...+.+.+++.+.+. .++|+|.+|-. .-.+--+.++.++...+-.
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~---~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~ 230 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMN---AGADIVMCDNM-SVEEIKEVVAYRNANYPHV 230 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHH---cCCCEEEECCC-CHHHHHHHHHHhhccCCCe
Confidence 66666665555555555543 232 3347889999999875 55899998742 1111112222222211223
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEe
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.+..+..-+.+.+....+.|+|.+.+
T Consensus 231 ~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 231 LLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred EEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 45556667889999999999986543
No 139
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=86.93 E-value=6.9 Score=28.68 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=50.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc--CCeEEEE----C--CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKC--LYEVTKC----N--RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL 87 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~--~~~v~~~----~--~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~ 87 (184)
.+.+|.++...+...+.+.+.|+.. +..+..+ . +.++..+.+. ...||+|++-+..|..+-+ +.+.+.
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~--~s~~dil~VglG~PkQE~~--~~~~~~ 122 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIA--RSGAGIVFVGLGCPKQEIW--MRNHRH 122 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHH--HcCCCEEEEEcCCcHhHHH--HHHhHH
Confidence 3579999999999999999999865 4554432 1 1233455555 4569999999999988743 444433
Q ss_pred cCCCCEEE
Q 029986 88 EMDLPVIM 95 (184)
Q Consensus 88 ~~~~~iIi 95 (184)
....++++
T Consensus 123 ~~~~~v~~ 130 (177)
T TIGR00696 123 LKPDAVMI 130 (177)
T ss_pred hCCCcEEE
Confidence 32344443
No 140
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=86.83 E-value=12 Score=30.02 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=66.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iI 94 (184)
+.+++++.+.+. .+.+...++..+. .+.......+..+++. . .|++++-.. .++-|..+++.+. ..+|+|
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~--~--adi~v~pS~-~Eg~~~~~lEAma--~G~Pvv 300 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQ--A--LDLFVLPSL-AEGISNTILEAMA--SGLPVI 300 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHH--h--cCEEEeccc-cccCchHHHHHHH--cCCCEE
Confidence 467777776553 3456666665543 2333333344455544 2 577776432 3444666777663 467887
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
..-. ....+.+..|..+++..|-+.+++.+.+..++.
T Consensus 301 ~s~~----~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 301 ATAV----GGNPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred EcCC----CCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 6322 224455667888999999999999999998765
No 141
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=86.70 E-value=9.7 Score=30.13 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=44.0
Q ss_pred CHHHHHHHhcccCCCCEE--EEEccCChHHHHHHHHcCCCceE-----eCCCCHHHHHHHHHHHHcC
Q 029986 77 DGFKLHEQVGLEMDLPVI--MMSVDGCTQDVMKGVTHGACNYL-----LKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 77 ~g~~l~~~l~~~~~~~iI--i~~~~~~~~~~~~a~~~ga~~~l-----~kP~~~~~l~~~l~~~~~~ 136 (184)
.++++++++.....+||+ ....-.+++.+..+++.|+++++ .|.-++.+..+.+..+..+
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 467888888665678998 55555688999999999999996 4544566666666665543
No 142
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=86.51 E-value=3 Score=31.13 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=41.9
Q ss_pred EEeCCCCCCCHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHH
Q 029986 68 ISDVHMPDMDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132 (184)
Q Consensus 68 ilD~~l~~~~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~ 132 (184)
++.+.+...++.+.++.+++. ++ -+|=..+=.+.+.+..+.++||. |++.|.-.+++.+..++
T Consensus 36 ~iEiT~~t~~a~~~I~~l~~~~p~-~~vGAGTV~~~e~a~~a~~aGA~-FivSP~~~~~v~~~~~~ 99 (196)
T PF01081_consen 36 AIEITLRTPNALEAIEALRKEFPD-LLVGAGTVLTAEQAEAAIAAGAQ-FIVSPGFDPEVIEYARE 99 (196)
T ss_dssp EEEEETTSTTHHHHHHHHHHHHTT-SEEEEES--SHHHHHHHHHHT-S-EEEESS--HHHHHHHHH
T ss_pred EEEEecCCccHHHHHHHHHHHCCC-CeeEEEeccCHHHHHHHHHcCCC-EEECCCCCHHHHHHHHH
Confidence 566677777888888888543 44 34444555667889999999998 88888877777666553
No 143
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=86.45 E-value=7.9 Score=30.51 Aligned_cols=92 Identities=16% Similarity=0.152 Sum_probs=58.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhc----CCeE---EEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCC
Q 029986 20 VLVVDDDPIWLRILEKMLRKC----LYEV---TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLP 92 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~----~~~v---~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~ 92 (184)
|+|=|.+-...-.+...+++. ++.. ..+.+.+++.+++. .++|+|++|-.-| ..--+.++.++ .....
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~---agaDiImLDNm~~-e~~~~av~~l~-~~~~~ 235 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALE---AGADIIMLDNMSP-EELKEAVKLLG-LAGRA 235 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH---cCCCEEEecCCCH-HHHHHHHHHhc-cCCce
Confidence 677777777666677777643 4422 36888999999886 5599999995333 22223333331 23334
Q ss_pred EEEEEccCChHHHHHHHHcCCCce
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
++=.+..-+.+.+......|++.+
T Consensus 236 ~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 236 LLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred EEEEeCCCCHHHHHHHhhcCCCEE
Confidence 455566667777888888888744
No 144
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=86.38 E-value=5.4 Score=29.38 Aligned_cols=69 Identities=22% Similarity=0.109 Sum_probs=44.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCe---EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCH-HHHHHHhc
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYE---VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG-FKLHEQVG 86 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~---v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g-~~l~~~l~ 86 (184)
-+|..||-++.....+++-++..+.. .....+...++.........+|+||+|-=-..... .++++.+.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHH
Confidence 47999999999999999999887632 33456666666655333566999999952223333 55666664
No 145
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=85.96 E-value=8 Score=25.67 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=30.5
Q ss_pred CChHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHcCC
Q 029986 100 GCTQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQQP 137 (184)
Q Consensus 100 ~~~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~~~ 137 (184)
...+....+++.|.+=|+-||+ +.+++.+.++.+.+.+
T Consensus 74 ~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 74 SHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp GHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 3357788999999999999999 7888888887765543
No 146
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=85.59 E-value=20 Score=30.19 Aligned_cols=108 Identities=18% Similarity=0.249 Sum_probs=64.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMM 96 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~ 96 (184)
+.+++|+.+.+. .+.+.++.+.......-.-..++...++. . .|++++-.. .+.-|..+++.+. ..+|||..
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~--~--aDv~V~pS~-~E~~g~~vlEAmA--~G~PVI~s 361 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYA--S--GDVFVMPSE-SETLGFVVLEAMA--SGVPVVAA 361 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHH--H--CCEEEECCc-ccccCcHHHHHHH--cCCCEEEc
Confidence 567777777653 34455554433222212223356666654 2 578776443 3334556666663 46888754
Q ss_pred EccCChHHHHHHHHc---CCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 97 SVDGCTQDVMKGVTH---GACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~---ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
... ...+.+.. |-.+++..|-+.+++.+.+..++..
T Consensus 362 ~~g----g~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 362 RAG----GIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD 400 (465)
T ss_pred CCC----CcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 322 23344555 8889999999999999999888753
No 147
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=85.28 E-value=12 Score=28.13 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=44.6
Q ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHhcCC--eE-EEECCHHHHHHHHHhcC--CCccEEEEeCC
Q 029986 13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLY--EV-TKCNRAEIALDMLRMSK--NGYDIVISDVH 72 (184)
Q Consensus 13 ~~~~~~~Ilivdd~~~~~~~l~~~L~~~~~--~v-~~~~~~~~~~~~l~~~~--~~~dlvilD~~ 72 (184)
..|++-+|.-+|-++...+.-+..++..|+ .+ ....++.+.+..+.... ..+|+||+|..
T Consensus 66 ~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 66 ALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp TSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred hhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 445566999999999999999999998765 23 35567777777665322 36999999985
No 148
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.27 E-value=13 Score=29.29 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=58.9
Q ss_pred CeEEEEeC--C---HHHHHHHHHHHHhcCCeEEEECCHHHHHHHH------HhcCCCccEEEEeCCCCCCCHHHHHHHhc
Q 029986 18 LRVLVVDD--D---PIWLRILEKMLRKCLYEVTKCNRAEIALDML------RMSKNGYDIVISDVHMPDMDGFKLHEQVG 86 (184)
Q Consensus 18 ~~Ilivdd--~---~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l------~~~~~~~dlvilD~~l~~~~g~~l~~~l~ 86 (184)
|||.|+-. . ......+..+|++.|+++....+........ ......+|++|+ -++|| .+++.++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDG-TlL~a~~ 75 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIA----IGGDG-TILRIEH 75 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEE----EeCcH-HHHHHHH
Confidence 56777732 2 2244556667777788877653221111100 001124787776 26777 2333332
Q ss_pred -ccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 87 -LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 87 -~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
....+||+.+.. |-.+|+. .+..+++...+..+.++....
T Consensus 76 ~~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~~~~ 116 (277)
T PRK03708 76 KTKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEGDYFI 116 (277)
T ss_pred hcCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcCCceE
Confidence 123678877742 4456766 667899999999998876443
No 149
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=85.12 E-value=13 Score=27.29 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=47.8
Q ss_pred EEECCHHHHHHHHHhcCCCccEEEEeCCCCC--------CCHHHHHHHhcc-cCCCCEEEEEccCChHHHHHHHHcCCCc
Q 029986 45 TKCNRAEIALDMLRMSKNGYDIVISDVHMPD--------MDGFKLHEQVGL-EMDLPVIMMSVDGCTQDVMKGVTHGACN 115 (184)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~--------~~g~~l~~~l~~-~~~~~iIi~~~~~~~~~~~~a~~~ga~~ 115 (184)
.++++.+++.+.. +.++|.+.++-..+. ..|++.++.+.. .+++||+++..- +.+.+..+.+.|+++
T Consensus 101 ~s~h~~~e~~~a~---~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~g 176 (196)
T TIGR00693 101 VSTHNLEELAEAE---AEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADG 176 (196)
T ss_pred EeCCCHHHHHHHh---HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCE
Confidence 3566667666543 356899998665542 236788888753 346888877544 577888889999988
Q ss_pred eEe
Q 029986 116 YLL 118 (184)
Q Consensus 116 ~l~ 118 (184)
+..
T Consensus 177 va~ 179 (196)
T TIGR00693 177 VAV 179 (196)
T ss_pred EEE
Confidence 753
No 150
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.78 E-value=25 Score=30.59 Aligned_cols=70 Identities=10% Similarity=0.052 Sum_probs=37.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhc-ccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 63 GYDIVISDVHMPDMDGFKLHEQVG-LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 63 ~~dlvilD~~l~~~~g~~l~~~l~-~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
..|.+++-..-.+.+ ..++..++ ..++.+++.-+. +++......+.|++ ++..|- .++.+.+...+....
T Consensus 481 ~a~~viv~~~~~~~~-~~iv~~~~~~~~~~~iiar~~--~~~~~~~l~~~Gad-~vv~p~--~~~a~~i~~~l~~~~ 551 (558)
T PRK10669 481 CARWLLLTIPNGYEA-GEIVASAREKRPDIEIIARAH--YDDEVAYITERGAN-QVVMGE--REIARTMLELLETPP 551 (558)
T ss_pred ccCEEEEEcCChHHH-HHHHHHHHHHCCCCeEEEEEC--CHHHHHHHHHcCCC-EEEChH--HHHHHHHHHHhcCCC
Confidence 356666644321111 12333333 345677776653 45555556788998 555453 566666666655443
No 151
>PRK15320 transcriptional activator SprB; Provisional
Probab=84.74 E-value=4.7 Score=30.27 Aligned_cols=98 Identities=16% Similarity=0.108 Sum_probs=62.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEE
Q 029986 19 RVLVVDDDPIWLRILEKMLRKC--LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMM 96 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~--~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~ 96 (184)
+|+|..++=...-.+..++++. |..+..+.+....+..++ ..||.+++=.--|..--+-|......-++-||+++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~---~~p~a~lil~l~p~eh~~lf~~l~~~l~~~~v~vv 79 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLS---DMPDAGLILALNPHEHVYLFHALLTRLQNRKVLVV 79 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHh---hCCCceEEEeeCchhHHHHHHHHHHHcCCCceEEE
Confidence 4788888888888888888876 677778888888887776 33666665433344433333332223467889999
Q ss_pred EccCChHHHHHHHHcCCCceEeC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
++.-......-..-.|.-+|+.|
T Consensus 80 ~d~l~~~dr~vl~~~g~~~~~l~ 102 (251)
T PRK15320 80 ADRLYYIDRCVLQYFGVMDYVLK 102 (251)
T ss_pred ecceeehhhhhhhhhcchhHHHH
Confidence 87654443333344577777765
No 152
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=84.55 E-value=13 Score=27.01 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=53.4
Q ss_pred HHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC-------CHHHHHHHhcccCCCCEEEEEccCChHHHHHH
Q 029986 36 MLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM-------DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKG 108 (184)
Q Consensus 36 ~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~-------~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a 108 (184)
.+....+--.++++.+++..... ..+|.+++.-..+.. -|++.++++.....+||+.+..- +.+....+
T Consensus 91 ~~~~~~~ig~S~h~~~e~~~a~~---~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l 166 (180)
T PF02581_consen 91 LLGPDKIIGASCHSLEEAREAEE---LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI-TPENIPEL 166 (180)
T ss_dssp HHTTTSEEEEEESSHHHHHHHHH---CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHH
T ss_pred hcccceEEEeecCcHHHHHHhhh---cCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHH
Confidence 34333344458888888666643 558999998766543 38888888866667999999654 56677788
Q ss_pred HHcCCCceEe
Q 029986 109 VTHGACNYLL 118 (184)
Q Consensus 109 ~~~ga~~~l~ 118 (184)
.+.|++++-.
T Consensus 167 ~~~Ga~gvAv 176 (180)
T PF02581_consen 167 REAGADGVAV 176 (180)
T ss_dssp HHTT-SEEEE
T ss_pred HHcCCCEEEE
Confidence 9999998753
No 153
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=84.28 E-value=15 Score=29.11 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=41.6
Q ss_pred CHHHHHHHhcccCCCCEE--EEEccCChHHHHHHHHcCCCceEe-----CCCCHHHHHHHHHHHHc
Q 029986 77 DGFKLHEQVGLEMDLPVI--MMSVDGCTQDVMKGVTHGACNYLL-----KPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 77 ~g~~l~~~l~~~~~~~iI--i~~~~~~~~~~~~a~~~ga~~~l~-----kP~~~~~l~~~l~~~~~ 135 (184)
.++++++++.+...+||+ ....-.+++.+..+++.|++++++ +.-++.+..+.+...+.
T Consensus 181 ~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~ 246 (283)
T cd04727 181 APYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVT 246 (283)
T ss_pred CCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 467888888665578997 555555789999999999999963 33345555555555544
No 154
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=84.26 E-value=18 Score=28.26 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=67.3
Q ss_pred HHHHHhcCCeEEEECC--HHHHHHHHHhcCCCccEEEEeCCCCCCCH-----HHHHHHhcccCCCCEEEEEccCChHHHH
Q 029986 34 EKMLRKCLYEVTKCNR--AEIALDMLRMSKNGYDIVISDVHMPDMDG-----FKLHEQVGLEMDLPVIMMSVDGCTQDVM 106 (184)
Q Consensus 34 ~~~L~~~~~~v~~~~~--~~~~~~~l~~~~~~~dlvilD~~l~~~~g-----~~l~~~l~~~~~~~iIi~~~~~~~~~~~ 106 (184)
.+.|-+.||.|..+.+ ..-|.++.. .++ ..++-+.-|-++| -..++.+...+++|||+=+.-..++.+.
T Consensus 130 ae~Lv~eGF~VlPY~~~D~v~a~rLed---~Gc-~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~ 205 (267)
T CHL00162 130 AEFLVKKGFTVLPYINADPMLAKHLED---IGC-ATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEAS 205 (267)
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHHH---cCC-eEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHH
Confidence 4566677999986553 444444433 333 3455565554443 2356666667889999998888999999
Q ss_pred HHHHcCCCceE-----eCCCCHHHHHHHHHHHHc
Q 029986 107 KGVTHGACNYL-----LKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 107 ~a~~~ga~~~l-----~kP~~~~~l~~~l~~~~~ 135 (184)
.+++.|+++.+ .|--++.++...+..+.+
T Consensus 206 ~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~ 239 (267)
T CHL00162 206 QAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQ 239 (267)
T ss_pred HHHHcCCCEEeecceeecCCCHHHHHHHHHHHHH
Confidence 99999999986 455567788777776654
No 155
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=84.15 E-value=14 Score=27.06 Aligned_cols=92 Identities=7% Similarity=0.049 Sum_probs=62.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHH-HhcccCCCCEEE
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCL--YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHE-QVGLEMDLPVIM 95 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~--~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~-~l~~~~~~~iIi 95 (184)
+++|+.+++...+.+...+..+| |.+....+.+++++.+......|.++.-+....+ .++-++ .+.. .-|+++
T Consensus 33 ~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~~~--~~p~LI 108 (176)
T PRK03958 33 KIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAHRK--GEPLLI 108 (176)
T ss_pred eEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhhcc--CCcEEE
Confidence 68999999999999999999885 6788999999999998732334777777877765 433333 2322 456666
Q ss_pred EEccCChHHHHHHHHcCCCceEe
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+.. ..+...+.++ ..||.+
T Consensus 109 vvG--g~gvp~evye--~aDynl 127 (176)
T PRK03958 109 VVG--AEKVPREVYE--LADWNV 127 (176)
T ss_pred EEc--CCCCCHHHHh--hCCEEe
Confidence 654 2333334443 334654
No 156
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=84.09 E-value=16 Score=27.61 Aligned_cols=86 Identities=19% Similarity=0.268 Sum_probs=62.4
Q ss_pred eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCC---------CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCC
Q 029986 43 EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD---------MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGA 113 (184)
Q Consensus 43 ~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~---------~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga 113 (184)
-+.-+++.++++...+ .++| |+...|.+ ...+++++.+.. ..+++|.=....+++.+.++++.||
T Consensus 130 ~MAD~St~ee~l~a~~---~G~D--~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga 203 (229)
T COG3010 130 AMADCSTFEEGLNAHK---LGFD--IIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIGA 203 (229)
T ss_pred EEeccCCHHHHHHHHH---cCCc--EEecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhCC
Confidence 4567888999988764 5578 55555543 345889998864 6788988888888999999999999
Q ss_pred CceEeCCC--CHHHHHHHHHHHH
Q 029986 114 CNYLLKPI--RIKELRNIWQHVA 134 (184)
Q Consensus 114 ~~~l~kP~--~~~~l~~~l~~~~ 134 (184)
+...+--. .++++.......+
T Consensus 204 ~aVvVGsAITRp~~It~~F~~~i 226 (229)
T COG3010 204 DAVVVGSAITRPEEITQWFVDAI 226 (229)
T ss_pred eEEEECcccCCHHHHHHHHHHHH
Confidence 98865433 3466666655544
No 157
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=83.62 E-value=27 Score=29.90 Aligned_cols=109 Identities=12% Similarity=0.139 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhcC-CeEEEEC------CHHHHHHHHHhcCCCccEEEEeCCCCCC-CHHHHHHHhcc-cCCCCEEEE
Q 029986 26 DPIWLRILEKMLRKCL-YEVTKCN------RAEIALDMLRMSKNGYDIVISDVHMPDM-DGFKLHEQVGL-EMDLPVIMM 96 (184)
Q Consensus 26 ~~~~~~~l~~~L~~~~-~~v~~~~------~~~~~~~~l~~~~~~~dlvilD~~l~~~-~g~~l~~~l~~-~~~~~iIi~ 96 (184)
.|.-...|...|+..| ++|.... +.++..+.+. ...||+|.+...-+.. ...++++.+++ .|+++||+=
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~--~~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G 98 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLR--AHCPDLVLITAITPAIYIACETLKFARERLPNAIIVLG 98 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHH--hcCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc
Confidence 5667778889998888 5776543 2333444444 4569999997644332 23456666654 356655543
Q ss_pred EccCChHHHHHHHH-cCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 97 SVDGCTQDVMKGVT-HGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 97 ~~~~~~~~~~~a~~-~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
.... .....+++. ....||++.--...-+.+.++.+..+.
T Consensus 99 G~h~-t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~g~ 139 (497)
T TIGR02026 99 GIHP-TFMFHQVLTEAPWIDFIVRGEGEETVVKLIAALENHN 139 (497)
T ss_pred CCCc-CcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHcCC
Confidence 3222 222234443 345678888777788888888776543
No 158
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=83.46 E-value=6.4 Score=29.59 Aligned_cols=49 Identities=14% Similarity=0.303 Sum_probs=38.0
Q ss_pred CCCCEEEEEc------cCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 89 MDLPVIMMSV------DGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 89 ~~~~iIi~~~------~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
-.+|||+++- +....++..+.++||++|+.-.+.++|-...-+.+.++.
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~g 148 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHG 148 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcC
Confidence 3679988853 344567888999999999999998888877777766553
No 159
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.36 E-value=21 Score=28.61 Aligned_cols=106 Identities=22% Similarity=0.275 Sum_probs=61.9
Q ss_pred CeEEEEeC--CHH---HHHHHHHHHHhcCCeEEEECCHHHHHHH----------------HHhcCCCccEEEEeCCCCCC
Q 029986 18 LRVLVVDD--DPI---WLRILEKMLRKCLYEVTKCNRAEIALDM----------------LRMSKNGYDIVISDVHMPDM 76 (184)
Q Consensus 18 ~~Ilivdd--~~~---~~~~l~~~L~~~~~~v~~~~~~~~~~~~----------------l~~~~~~~dlvilD~~l~~~ 76 (184)
.+|.|+-. .+. ....+..+|...|+.+.........+.. .......+|++|+ -++
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGG 81 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGG 81 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcC
Confidence 35777743 222 3455666777778877765432221110 0011123677776 367
Q ss_pred CHHHHHHHhcc--cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCCC
Q 029986 77 DGFKLHEQVGL--EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFEE 142 (184)
Q Consensus 77 ~g~~l~~~l~~--~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~~ 142 (184)
|| .+++..+. ...+||+-+. .|-.+|+. .+..+++...+..++++.....+
T Consensus 82 DG-T~L~aar~~~~~~~PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~y~i~~ 134 (306)
T PRK03372 82 DG-TILRAAELARAADVPVLGVN-------------LGHVGFLA-EAEAEDLDEAVERVVDRDYRVEE 134 (306)
T ss_pred CH-HHHHHHHHhccCCCcEEEEe-------------cCCCceec-cCCHHHHHHHHHHHHcCCceEEE
Confidence 87 33333321 2467877653 37778988 57789999999999987654443
No 160
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.17 E-value=8.2 Score=30.26 Aligned_cols=60 Identities=22% Similarity=0.203 Sum_probs=41.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhccc----CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 63 GYDIVISDVHMPDMDGFKLHEQVGLE----MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 63 ~~dlvilD~~l~~~~g~~l~~~l~~~----~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
.+|++|+ -++|| .+++..+.. .++|++-+. .|-.+|+. .++.+++...+..+.++..
T Consensus 35 ~~Dlvi~----iGGDG-T~L~a~~~~~~~~~~iPilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~y 95 (265)
T PRK04885 35 NPDIVIS----VGGDG-TLLSAFHRYENQLDKVRFVGVH-------------TGHLGFYT-DWRPFEVDKLVIALAKDPG 95 (265)
T ss_pred CCCEEEE----ECCcH-HHHHHHHHhcccCCCCeEEEEe-------------CCCceecc-cCCHHHHHHHHHHHHcCCc
Confidence 3788887 36787 444544321 466776553 47788998 6888999999999988765
Q ss_pred CCC
Q 029986 139 PFE 141 (184)
Q Consensus 139 ~~~ 141 (184)
...
T Consensus 96 ~i~ 98 (265)
T PRK04885 96 QVV 98 (265)
T ss_pred eEE
Confidence 433
No 161
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=82.08 E-value=19 Score=27.03 Aligned_cols=72 Identities=19% Similarity=0.304 Sum_probs=49.3
Q ss_pred EEECCHHHHHHHHHhcCCCccEEEEeCC-C------CCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 45 TKCNRAEIALDMLRMSKNGYDIVISDVH-M------PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~dlvilD~~-l------~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
..+.+.+++..... .++|.+.+... . ....+++.++.++...++|++....-.+.+.+.+++..|+++.+
T Consensus 128 v~v~t~~ea~~a~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~ 204 (219)
T cd04729 128 ADISTLEEALNAAK---LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVV 204 (219)
T ss_pred EECCCHHHHHHHHH---cCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 35566777655543 56888765321 1 12234678888865557899988777778999999999999887
Q ss_pred eC
Q 029986 118 LK 119 (184)
Q Consensus 118 ~k 119 (184)
.-
T Consensus 205 vG 206 (219)
T cd04729 205 VG 206 (219)
T ss_pred Ec
Confidence 53
No 162
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=81.74 E-value=16 Score=28.24 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=50.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-CCeEEEEC----C---HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKC-LYEVTKCN----R---AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL 87 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~-~~~v~~~~----~---~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~ 87 (184)
.+.+|.++...+...+.+.+.|+.. +..+.-+. + .++..+.+. ..+||++++-+..|..+-+ +.+.+.
T Consensus 104 ~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~--~s~~dil~VglG~PkQE~~--~~~~~~ 179 (243)
T PRK03692 104 EGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIH--ASGAKIVTVAMGSPKQEIF--MRDCRL 179 (243)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHH--hcCCCEEEEECCCcHHHHH--HHHHHH
Confidence 3578999999999999999888654 55543222 1 233455555 4569999999999987654 444433
Q ss_pred cCCCCEEE
Q 029986 88 EMDLPVIM 95 (184)
Q Consensus 88 ~~~~~iIi 95 (184)
....++++
T Consensus 180 ~~~~~v~~ 187 (243)
T PRK03692 180 VYPDALYM 187 (243)
T ss_pred hCCCCEEE
Confidence 33445543
No 163
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=81.20 E-value=11 Score=26.47 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=42.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHH-HHHHHHHhcCCCccEEEEeCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAE-IALDMLRMSKNGYDIVISDVHMPD 75 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~-~~~~~l~~~~~~~dlvilD~~l~~ 75 (184)
++.+|.|+.......+.+..+|.+.|..+..++... +..+.++ ..|+|+.-..-+.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~----~ADIVvsAtg~~~ 83 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH----DADVVVVGSPKPE 83 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh----hCCEEEEecCCCC
Confidence 577999999999999999999999999998887322 2222333 2699999876553
No 164
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.17 E-value=24 Score=27.48 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=60.4
Q ss_pred CeEEEEeCCH--HHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEE
Q 029986 18 LRVLVVDDDP--IWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 18 ~~Ilivdd~~--~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi 95 (184)
|++.++..+. ...+.+...|.+.|..+....+.. .....+|++|+ -++|| .+++..+.. ++||+-
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~d~vi~----iGGDG-T~L~a~~~~-~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASA-------SGKVTADLIIV----VGGDG-TVLKAAKKV-GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccc-------cccCCCCEEEE----ECCcH-HHHHHHHHc-CCCEEE
Confidence 3555554333 344556667777777766554322 11345788887 36777 344545433 788876
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
+. .|-.+|+. .+..+++...+..+.++....
T Consensus 68 in-------------~G~lGfl~-~~~~~~~~~~l~~~~~g~~~~ 98 (256)
T PRK14075 68 FK-------------AGRLGFLS-SYTLEEIDRFLEDLKNWNFRE 98 (256)
T ss_pred Ee-------------CCCCcccc-ccCHHHHHHHHHHHHcCCcEE
Confidence 63 45577887 688899999999988875443
No 165
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=81.08 E-value=6.8 Score=31.73 Aligned_cols=54 Identities=15% Similarity=0.071 Sum_probs=39.6
Q ss_pred CccEEEEeCCCCCCC-HHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 63 GYDIVISDVHMPDMD-GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 63 ~~dlvilD~~l~~~~-g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
.+|+|.+|...+..+ -.+++++++.. ++.|||. .+-.+.+.+..+.++|++...
T Consensus 111 ~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~-g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 111 TPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA-GNVGTPEAVRELENAGADATK 166 (326)
T ss_pred CCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE-EecCCHHHHHHHHHcCcCEEE
Confidence 469999999887644 46678888644 4566554 234578899999999999865
No 166
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=80.98 E-value=22 Score=26.88 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=51.7
Q ss_pred HHHHHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCC-------CCHHHHHHHhcccCCCCEEEEEccCChHHH
Q 029986 34 EKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPD-------MDGFKLHEQVGLEMDLPVIMMSVDGCTQDV 105 (184)
Q Consensus 34 ~~~L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-------~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~ 105 (184)
...+...+..+. .+.+.+.+.... +..+|.++++..-.+ ...+++++++++..++|+++...-.+.+.+
T Consensus 95 ~~~~~~~~i~~i~~v~~~~~~~~~~---~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v 171 (236)
T cd04730 95 VERLKAAGIKVIPTVTSVEEARKAE---AAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGI 171 (236)
T ss_pred HHHHHHcCCEEEEeCCCHHHHHHHH---HcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHH
Confidence 333444444433 344555544433 245788887653211 135667888765557899888776666888
Q ss_pred HHHHHcCCCceEeC
Q 029986 106 MKGVTHGACNYLLK 119 (184)
Q Consensus 106 ~~a~~~ga~~~l~k 119 (184)
.+++..|+++...-
T Consensus 172 ~~~l~~GadgV~vg 185 (236)
T cd04730 172 AAALALGADGVQMG 185 (236)
T ss_pred HHHHHcCCcEEEEc
Confidence 89999999988643
No 167
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.91 E-value=22 Score=26.90 Aligned_cols=94 Identities=17% Similarity=0.104 Sum_probs=61.1
Q ss_pred HHHHhcC-CeEEEECCHHHHHHHHHh-cCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCC--EEEEEccCChHHHHHHH
Q 029986 35 KMLRKCL-YEVTKCNRAEIALDMLRM-SKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLP--VIMMSVDGCTQDVMKGV 109 (184)
Q Consensus 35 ~~L~~~~-~~v~~~~~~~~~~~~l~~-~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~--iIi~~~~~~~~~~~~a~ 109 (184)
..|.+.+ .-|....+.+++....+. .+.+.. ++.+.|...++++.++.+++. +.-| +|=..+=.+.+.+..+.
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~~~Gi~--~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~ 85 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVIKGGIK--AIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAI 85 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCC--EEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHH
Confidence 4455444 345556667777766653 233333 666677777788888888543 2222 33334455678889999
Q ss_pred HcCCCceEeCCCCHHHHHHHHH
Q 029986 110 THGACNYLLKPIRIKELRNIWQ 131 (184)
Q Consensus 110 ~~ga~~~l~kP~~~~~l~~~l~ 131 (184)
++||. |++.|....++.+..+
T Consensus 86 ~aGA~-FivsP~~~~~v~~~~~ 106 (213)
T PRK06552 86 LAGAQ-FIVSPSFNRETAKICN 106 (213)
T ss_pred HcCCC-EEECCCCCHHHHHHHH
Confidence 99998 8888988888866654
No 168
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=80.43 E-value=30 Score=28.24 Aligned_cols=110 Identities=14% Similarity=0.171 Sum_probs=64.5
Q ss_pred CCeEEEEeCCH--------HHHHHHHHHHHhcCCeEEEEC--CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhc
Q 029986 17 GLRVLVVDDDP--------IWLRILEKMLRKCLYEVTKCN--RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG 86 (184)
Q Consensus 17 ~~~Ilivdd~~--------~~~~~l~~~L~~~~~~v~~~~--~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~ 86 (184)
..+.+|+.+.+ ...+.+.......+..+.... ..++..+++. . .|++++-....+.-|..+++.+.
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~--~--aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYP--L--ADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHH--h--CCEEEeCCCCccccccHHHHHHH
Confidence 45677776532 223334444444443443333 3455555554 2 58888755444444555566553
Q ss_pred ccCCCCEEEEEccCChHHHHHHHHcCCCce-EeCCCCHHHHHHHHHHHHcC
Q 029986 87 LEMDLPVIMMSVDGCTQDVMKGVTHGACNY-LLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 87 ~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~-l~kP~~~~~l~~~l~~~~~~ 136 (184)
..+|||..... ...+.+..|..+| +..|.+.+++.+.+..++..
T Consensus 300 --~G~PVI~s~~g----g~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 300 --AGKPVLASTKG----GITEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred --cCCCEEEeCCC----CcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 46888764322 2344566788888 56789999999999988763
No 169
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=80.25 E-value=15 Score=27.77 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCCcc-EEEEeCCCCCC---CHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 51 EIALDMLRMSKNGYD-IVISDVHMPDM---DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 51 ~~~~~~l~~~~~~~d-lvilD~~l~~~---~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.+..+.+. +.+++ +++.|+.-.+. -.+++++.+....++|+++=..-.+.+.+..+++.|+++.+.
T Consensus 148 ~~~~~~~~--~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 148 EELAKRLE--ELGLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred HHHHHHHH--hCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 44444444 44567 66677743321 226778888665678988877778888888999999999875
No 170
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=80.16 E-value=22 Score=27.38 Aligned_cols=97 Identities=20% Similarity=0.168 Sum_probs=63.0
Q ss_pred HHHHHhcCCeEEEECCH--HHHHHHHHhcCCCccEEEEeCCCCCCCHH-----HHHHHhcccCCCCEEEEEccCChHHHH
Q 029986 34 EKMLRKCLYEVTKCNRA--EIALDMLRMSKNGYDIVISDVHMPDMDGF-----KLHEQVGLEMDLPVIMMSVDGCTQDVM 106 (184)
Q Consensus 34 ~~~L~~~~~~v~~~~~~--~~~~~~l~~~~~~~dlvilD~~l~~~~g~-----~l~~~l~~~~~~~iIi~~~~~~~~~~~ 106 (184)
.+.|-+.||.|..+.+. --+.++.. .++ ..++-+.-|-++|. ..++.+....++|||+=+.-..+..+.
T Consensus 123 ae~Lv~eGF~VlPY~~dD~v~arrLee---~Gc-aavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa 198 (262)
T COG2022 123 AEQLVKEGFVVLPYTTDDPVLARRLEE---AGC-AAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAA 198 (262)
T ss_pred HHHHHhCCCEEeeccCCCHHHHHHHHh---cCc-eEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHH
Confidence 45666779998865543 33333322 232 45666766655543 345666556689999998888899999
Q ss_pred HHHHcCCCceEeC-----CCCHHHHHHHHHHHH
Q 029986 107 KGVTHGACNYLLK-----PIRIKELRNIWQHVA 134 (184)
Q Consensus 107 ~a~~~ga~~~l~k-----P~~~~~l~~~l~~~~ 134 (184)
.+++.|+|+.+.- --++-.+.++...+.
T Consensus 199 ~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av 231 (262)
T COG2022 199 QAMELGADAVLLNTAIARAKDPVAMARAFALAV 231 (262)
T ss_pred HHHhcccceeehhhHhhccCChHHHHHHHHHHH
Confidence 9999999999853 224445555554443
No 171
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=80.03 E-value=12 Score=27.83 Aligned_cols=70 Identities=11% Similarity=0.038 Sum_probs=49.0
Q ss_pred CCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCC--CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 41 LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD--MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 41 ~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~--~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
++.|....+.+++.+.+. .+.|+|=+|...-. .+--+++++++... .+++++-++.+....+.++|+| ++
T Consensus 45 ~~~V~ITPT~~ev~~l~~---aGadIIAlDaT~R~Rp~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~G~D-~I 116 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAE---AGADIIALDATDRPRPETLEELIREIKEKY---QLVMADISTLEEAINAAELGFD-II 116 (192)
T ss_dssp TSS--BS-SHHHHHHHHH---CT-SEEEEE-SSSS-SS-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHTT-S-EE
T ss_pred CCCeEECCCHHHHHHHHH---cCCCEEEEecCCCCCCcCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHcCCC-EE
Confidence 467888888899988876 45899999985532 55677888886544 7788888999999999999976 65
No 172
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=79.92 E-value=9.9 Score=29.32 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=49.6
Q ss_pred CCeEEEECCH-----HHHHHHHHh--cCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCC
Q 029986 41 LYEVTKCNRA-----EIALDMLRM--SKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGA 113 (184)
Q Consensus 41 ~~~v~~~~~~-----~~~~~~l~~--~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga 113 (184)
+.++..++++ +++-+.... ..+.||.+|+=.-.+..-|-.-.+.+-+..++|.|++++..... ..++++..-
T Consensus 31 dI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~~d~l~~~g 109 (277)
T PRK00994 31 DIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKK-VKDAMEEQG 109 (277)
T ss_pred CceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccc-hHHHHHhcC
Confidence 6677666543 222222211 26789999986555555555545655445678999998765544 447888878
Q ss_pred CceEeCCC
Q 029986 114 CNYLLKPI 121 (184)
Q Consensus 114 ~~~l~kP~ 121 (184)
.+|+.-+.
T Consensus 110 ~GYIivk~ 117 (277)
T PRK00994 110 LGYIIVKA 117 (277)
T ss_pred CcEEEEec
Confidence 88876554
No 173
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=79.88 E-value=34 Score=28.48 Aligned_cols=98 Identities=9% Similarity=0.020 Sum_probs=61.8
Q ss_pred EeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC----CHHHHHHHhccc-CCCCEEEEE
Q 029986 23 VDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM----DGFKLHEQVGLE-MDLPVIMMS 97 (184)
Q Consensus 23 vdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~----~g~~l~~~l~~~-~~~~iIi~~ 97 (184)
|--|..-.+.|...|...||+.... ...+|+|++...-... ...+.++.+++. ++.+|++..
T Consensus 6 C~~N~~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgG 72 (414)
T TIGR01579 6 CRVNQYESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTG 72 (414)
T ss_pred CCCCHHHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEEC
Confidence 3446667788888898888876532 2348999998754433 356677777543 455555543
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
... ...-..+.+....|++..+-....+...+....
T Consensus 73 c~a-~~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~~ 108 (414)
T TIGR01579 73 CYA-QSNPKELADLKDVDLVLGNKEKDKINKLLSLGL 108 (414)
T ss_pred Ccc-ccCHHHHhcCCCCcEEECCCCHHHHHHHHHHHh
Confidence 322 222233345555678888888788887776554
No 174
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=79.59 E-value=11 Score=32.55 Aligned_cols=67 Identities=18% Similarity=0.127 Sum_probs=43.9
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCCC-CHHHHHHHhcc-cCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPDM-DGFKLHEQVGL-EMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~~-~g~~l~~~l~~-~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+..+-.+.+- +.+.|+|.+|..-... .-++++++++. .++.+||+ .+-.+.+.+..+.++||+...+
T Consensus 248 ~~~~r~~~l~--~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 248 SDKERLEHLV--KAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred cHHHHHHHHH--HcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 3334444443 4569999999953221 23478888865 35565543 3456788899999999997754
No 175
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=79.57 E-value=11 Score=30.65 Aligned_cols=54 Identities=13% Similarity=-0.042 Sum_probs=40.2
Q ss_pred CCccEEEEeCCCCCCC-HHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCce
Q 029986 62 NGYDIVISDVHMPDMD-GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 62 ~~~dlvilD~~l~~~~-g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
..+|+|++|+...... -+++++++++. |+.+ |+..+-.+.+.+...+++|||..
T Consensus 121 ~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~-vIaGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 121 PALNFICIDVANGYSEHFVQFVAKAREAWPDKT-ICAGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCc-EEEecccCHHHHHHHHHcCCCEE
Confidence 4689999999765443 36678888654 5655 44566677888999999999976
No 176
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=78.94 E-value=17 Score=28.88 Aligned_cols=71 Identities=10% Similarity=0.059 Sum_probs=47.1
Q ss_pred eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 43 EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 43 ~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
....+.+.+++.+.+. .++|+|++| +|+..+--+..+.++.......+-.+..-+.+.+......|+|-+.
T Consensus 192 IeVEv~tleqa~ea~~---agaDiI~LD-n~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 192 IVVEADTPKEAIAALR---AQPDVLQLD-KFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred EEEECCCHHHHHHHHH---cCCCEEEEC-CCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 3446789999999885 458999998 4443333334444432222345666777788888888899988554
No 177
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=78.93 E-value=20 Score=25.19 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=66.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCH--HHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRA--EIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDL 91 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~--~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~ 91 (184)
+.++++|+.+.. ....+.......+. .+...... ++..+++.. .|++++-... +.-|..+++.+. ..+
T Consensus 46 ~~~~l~i~G~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~--~g~ 117 (172)
T PF00534_consen 46 PNYKLVIVGDGE-YKKELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA--CGC 117 (172)
T ss_dssp TTEEEEEESHCC-HHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH--TT-
T ss_pred CCeEEEEEcccc-ccccccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc--ccc
Confidence 356777777333 22234444444332 34444433 466666652 5888886555 445666777663 456
Q ss_pred CEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 92 PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
|+|+. . .....+.+..+..+++..+.+.+++...+..++..
T Consensus 118 pvI~~-~---~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 118 PVIAS-D---IGGNNEIINDGVNGFLFDPNDIEELADAIEKLLND 158 (172)
T ss_dssp EEEEE-S---STHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHH
T ss_pred ceeec-c---ccCCceeeccccceEEeCCCCHHHHHHHHHHHHCC
Confidence 77643 2 34445667788899999999999999999988763
No 178
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=78.73 E-value=6.6 Score=30.30 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=40.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCC
Q 029986 61 KNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122 (184)
Q Consensus 61 ~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~ 122 (184)
.+.||++|+=.-.+..-|-.-.+.+-+..++|.|++++..... ..++++..-.+|+.-+.+
T Consensus 57 ~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 57 EWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK-AKDALEEEGFGYIIVKAD 117 (276)
T ss_dssp HH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS
T ss_pred hhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh-hHHHHHhcCCcEEEEecC
Confidence 4679999987666666677767776545789999998755444 578888888889866653
No 179
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=78.71 E-value=39 Score=28.56 Aligned_cols=108 Identities=10% Similarity=0.128 Sum_probs=66.5
Q ss_pred CCeEEEEeCC---HHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCC
Q 029986 17 GLRVLVVDDD---PIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDL 91 (184)
Q Consensus 17 ~~~Ilivdd~---~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~ 91 (184)
+.+++|+.+. +...+.+....++.+. .|.... .++..+++. ..|++++-.. .++-+..+++.+. ..+
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~----~aDv~vlpS~-~Eg~p~~vlEAma--~G~ 395 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLP----KLDVLVLTSI-SEGQPLVILEAMA--AGI 395 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHH----hCCEEEeCch-hhcCChHHHHHHH--cCC
Confidence 5677777543 4556666666666553 344333 344444443 2588887543 3344566677663 467
Q ss_pred CEEEEEccCChHHHHHHHHc------CCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 92 PVIMMSVDGCTQDVMKGVTH------GACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~------ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
|+|.. .. ....+.+.. |..+++..|-+.+++.+.+..++..
T Consensus 396 PVVat-d~---g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~ 442 (475)
T cd03813 396 PVVAT-DV---GSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKD 442 (475)
T ss_pred CEEEC-CC---CChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC
Confidence 88763 22 223344444 6789999999999999999988763
No 180
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=78.52 E-value=12 Score=30.23 Aligned_cols=56 Identities=9% Similarity=0.066 Sum_probs=42.4
Q ss_pred ccEEEEeCCCCCC-CHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 64 YDIVISDVHMPDM-DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 64 ~dlvilD~~l~~~-~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
+|+|++|...... .-++.++++++..+.|.++..+-.+.+.+..+.++||+...+-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 6999999865543 3466788887655567777765678899999999999988654
No 181
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=78.41 E-value=16 Score=25.76 Aligned_cols=69 Identities=25% Similarity=0.356 Sum_probs=44.8
Q ss_pred eEEEEeCCHHHHHHHHHHHH---hcC---CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCC
Q 029986 19 RVLVVDDDPIWLRILEKMLR---KCL---YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLP 92 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~---~~~---~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~ 92 (184)
-+.||.||+..+.+|+.-.. +.+ +.| .+.+ .++++.++. .-|.+-+. -.+|-++.+++.. .+-|
T Consensus 64 plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVV-NV~t-~~~L~~Lr~--lapgl~l~-----P~sgddLA~rL~l-~HYP 133 (142)
T PF11072_consen 64 PLFLVGDDPLSRQWLQQNAEELKQLGAVGLVV-NVAT-EAALQRLRQ--LAPGLPLL-----PVSGDDLARRLGL-SHYP 133 (142)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEE-ecCC-HHHHHHHHH--HcCCCeec-----CCCHHHHHHHhCC-Cccc
Confidence 48999999999999985544 443 333 3433 455666652 22454444 4589999999953 4567
Q ss_pred EEEEE
Q 029986 93 VIMMS 97 (184)
Q Consensus 93 iIi~~ 97 (184)
++|..
T Consensus 134 vLIt~ 138 (142)
T PF11072_consen 134 VLITA 138 (142)
T ss_pred EEeec
Confidence 77654
No 182
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=78.17 E-value=16 Score=27.90 Aligned_cols=67 Identities=22% Similarity=0.241 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCCccEEEEeCCCCCC---CHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 50 AEIALDMLRMSKNGYDIVISDVHMPDM---DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 50 ~~~~~~~l~~~~~~~dlvilD~~l~~~---~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
..+..+.+. ...-.++++|+...+. ..+++++.+.....+|+++-..-.+.+.+..+++.|++..+.
T Consensus 148 ~~~~~~~~~--~~~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 148 PEELLRRLA--KWPEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred HHHHHHHHH--HhCCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 445555554 2312588889865432 235677888655678999888888889999999999998875
No 183
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=78.16 E-value=17 Score=24.19 Aligned_cols=69 Identities=23% Similarity=0.348 Sum_probs=44.1
Q ss_pred eEEEEeCCHHHHHHHHHHH---Hhc---CCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCC
Q 029986 19 RVLVVDDDPIWLRILEKML---RKC---LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLP 92 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L---~~~---~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~ 92 (184)
-+.+|.||+..+..|+.-- ++. |+.| .+.+ .++++.++. .-|.+ .|.-.+|-++.+.+.. .+-|
T Consensus 26 p~FlIGdD~~S~~WL~~~~~~L~~l~AvGlVV-nV~t-~~~l~~Lr~--lapgl-----~l~P~sgddLa~rL~l-~hYP 95 (105)
T TIGR03765 26 PLFLIGDDPASRQWLQQNAAALKSLGAVGLVV-NVET-AAALQRLRA--LAPGL-----PLLPVSGDDLAERLGL-RHYP 95 (105)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHCCCeEEEE-ecCC-HHHHHHHHH--HcCCC-----cccCCCHHHHHHHhCC-Cccc
Confidence 4899999999999998554 443 3333 3433 455555552 22444 3445689899999853 4567
Q ss_pred EEEEE
Q 029986 93 VIMMS 97 (184)
Q Consensus 93 iIi~~ 97 (184)
++|..
T Consensus 96 vLit~ 100 (105)
T TIGR03765 96 VLITA 100 (105)
T ss_pred EEEec
Confidence 77654
No 184
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=78.01 E-value=30 Score=26.77 Aligned_cols=97 Identities=15% Similarity=0.120 Sum_probs=63.1
Q ss_pred HHHHHHHhcCCeEEEECC-HHH-HHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc---cCCCCEEEEEccCChHHHH
Q 029986 32 ILEKMLRKCLYEVTKCNR-AEI-ALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL---EMDLPVIMMSVDGCTQDVM 106 (184)
Q Consensus 32 ~l~~~L~~~~~~v~~~~~-~~~-~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~---~~~~~iIi~~~~~~~~~~~ 106 (184)
.++..|......+..+.. .+. ..+.+. ..++|-+++|.+....+.-.++.+++. .+..||+=+. -..+..++
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A--~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p-~g~~~~Ik 83 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILA--TAGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPP-VGDPVMIK 83 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHH--hcCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCC-CCCHHHHH
Confidence 356666654445543332 222 334433 467999999999998888888888852 3455665543 45688999
Q ss_pred HHHHcCCCceEeCCCC-HHHHHHHHH
Q 029986 107 KGVTHGACNYLLKPIR-IKELRNIWQ 131 (184)
Q Consensus 107 ~a~~~ga~~~l~kP~~-~~~l~~~l~ 131 (184)
++++.||...|..=++ .++-...+.
T Consensus 84 q~LD~GAqtlliPmV~s~eqAr~~V~ 109 (255)
T COG3836 84 QLLDIGAQTLLIPMVDTAEQARQAVA 109 (255)
T ss_pred HHHccccceeeeeccCCHHHHHHHHH
Confidence 9999999999886554 334444433
No 185
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=77.87 E-value=15 Score=28.33 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=37.0
Q ss_pred HHHHHhcccCCCCEEEEE-----ccCChHHHHHHHHcCCCceEeC--CCC-HHHHHHHHHHHHcC
Q 029986 80 KLHEQVGLEMDLPVIMMS-----VDGCTQDVMKGVTHGACNYLLK--PIR-IKELRNIWQHVAQQ 136 (184)
Q Consensus 80 ~l~~~l~~~~~~~iIi~~-----~~~~~~~~~~a~~~ga~~~l~k--P~~-~~~l~~~l~~~~~~ 136 (184)
++++.++...+.|+++++ ...-..++..+.+.|++.++.. |+. .+++...++.+.+.
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~ 128 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNK 128 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHc
Confidence 466666655678886553 2233445778899999999986 333 46666666666554
No 186
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.74 E-value=19 Score=28.83 Aligned_cols=95 Identities=16% Similarity=0.190 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCeEEEECCHHHHHHH----------------HHhcCCCccEEEEeCCCCCCCHHHHHHHhcc--cCC
Q 029986 29 WLRILEKMLRKCLYEVTKCNRAEIALDM----------------LRMSKNGYDIVISDVHMPDMDGFKLHEQVGL--EMD 90 (184)
Q Consensus 29 ~~~~l~~~L~~~~~~v~~~~~~~~~~~~----------------l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~--~~~ 90 (184)
....+..+|.+.|+.+....+....+.. .......+|++|+ -++|| .+++..+. ...
T Consensus 18 ~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGDG-TlL~aar~~~~~~ 92 (305)
T PRK02649 18 TAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV----LGGDG-TVLSAARQLAPCG 92 (305)
T ss_pred HHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE----EeCcH-HHHHHHHHhcCCC
Confidence 3455666777778887654432211110 0000123677776 36777 45554432 246
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCCC
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFEE 142 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~~ 142 (184)
+||+-+. .|-.+|+. .++.+++...+..++++.....+
T Consensus 93 iPilGIN-------------~G~lGFLt-~~~~~~~~~~l~~l~~g~y~ie~ 130 (305)
T PRK02649 93 IPLLTIN-------------TGHLGFLT-EAYLNQLDEAIDQVLAGQYTIEE 130 (305)
T ss_pred CcEEEEe-------------CCCCcccc-cCCHHHHHHHHHHHHcCCcEEEE
Confidence 7877653 36778888 46789999999999887654443
No 187
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=77.54 E-value=19 Score=27.23 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCCcc-EEEEeCCCCC-CCH--HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcC-CCceEe
Q 029986 51 EIALDMLRMSKNGYD-IVISDVHMPD-MDG--FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHG-ACNYLL 118 (184)
Q Consensus 51 ~~~~~~l~~~~~~~d-lvilD~~l~~-~~g--~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~g-a~~~l~ 118 (184)
.+..+.+. ..+++ +++.+..-.+ ..| +++++++....++|+|.-..-.+.+.+..+++.| +++.+.
T Consensus 149 ~e~~~~~~--~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 149 EDLAKRFE--DAGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHH--hcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 44455544 34466 6666664322 223 6788888655568998887778888999999988 998875
No 188
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=77.45 E-value=7.9 Score=28.71 Aligned_cols=56 Identities=29% Similarity=0.320 Sum_probs=38.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCC--eEE-EECCHHHHHHHHHhcCCCccEEEEeCCCC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLY--EVT-KCNRAEIALDMLRMSKNGYDIVISDVHMP 74 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~ 74 (184)
-++++||-+......|.+-++..++ .+. ...+...++..+.. ...+|+||+|-=-.
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~-~~~FDlVflDPPy~ 125 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT-REPFDLVFLDPPYA 125 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC-CCcccEEEeCCCCc
Confidence 4799999999999999998887762 222 33344444444431 22499999997444
No 189
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=77.45 E-value=4.1 Score=30.25 Aligned_cols=74 Identities=11% Similarity=0.110 Sum_probs=47.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCC--C--CHHHHHHHhcccCCCCEEE
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD--M--DGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~--~--~g~~l~~~l~~~~~~~iIi 95 (184)
|+|||........|..+|++.|+++......+...+.+. ...||.||+--.-.. . ...++++.+ ....|++-
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~--~~~~d~iIlsgGP~~p~~~~~~~~~i~~~--~~~~PvLG 77 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIE--NMKPDFLMISPGPCSPNEAGISMEVIRYF--AGKIPIFG 77 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHh--hCCCCEEEECCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 899999999999999999999988877665433333333 345888888543211 1 122333333 24578876
Q ss_pred EE
Q 029986 96 MS 97 (184)
Q Consensus 96 ~~ 97 (184)
+-
T Consensus 78 IC 79 (195)
T PRK07649 78 VC 79 (195)
T ss_pred Ec
Confidence 63
No 190
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=77.30 E-value=15 Score=30.74 Aligned_cols=56 Identities=16% Similarity=0.120 Sum_probs=41.8
Q ss_pred CCCccEEEEeCCCCC-CCHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 61 KNGYDIVISDVHMPD-MDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 61 ~~~~dlvilD~~l~~-~~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
+.++|+|.+|...+. ..-.+++++++.. |+.+++ +..-.+.+.+..+.++||+...
T Consensus 163 ~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 163 KAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred hcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 456999999998764 3456788888653 566644 4455678899999999999764
No 191
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.20 E-value=20 Score=28.49 Aligned_cols=93 Identities=14% Similarity=0.074 Sum_probs=56.1
Q ss_pred EEEEeCCHHHHHHHHHHHHh----cCC---eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCC
Q 029986 20 VLVVDDDPIWLRILEKMLRK----CLY---EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDL 91 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~----~~~---~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~ 91 (184)
|+|=|.+-.....+...+.. .++ -...+.+.+++.+.+. .++|+|.+|- |.-.+--+.++.++. .+++
T Consensus 169 ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~---~GaD~I~LDn-~~~e~l~~av~~~~~~~~~i 244 (288)
T PRK07428 169 VMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALE---YGADIIMLDN-MPVDLMQQAVQLIRQQNPRV 244 (288)
T ss_pred eeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHH---cCCCEEEECC-CCHHHHHHHHHHHHhcCCCe
Confidence 77777665555445555542 232 2346788999998875 5689999993 222222223333332 3444
Q ss_pred CEEEEEccCChHHHHHHHHcCCCceE
Q 029986 92 PVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
++ ..+..-+.+.+.+....|++..-
T Consensus 245 ~l-eAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 245 KI-EASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred EE-EEECCCCHHHHHHHHHcCCCEEE
Confidence 43 44455678888888899998654
No 192
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.18 E-value=24 Score=28.11 Aligned_cols=103 Identities=18% Similarity=0.168 Sum_probs=58.9
Q ss_pred eEEEEeC--CHHH---HHHHHHHHHhcCCeEEEECCHHHHHH-------HHHhcCCCccEEEEeCCCCCCCHHHHHHHhc
Q 029986 19 RVLVVDD--DPIW---LRILEKMLRKCLYEVTKCNRAEIALD-------MLRMSKNGYDIVISDVHMPDMDGFKLHEQVG 86 (184)
Q Consensus 19 ~Ilivdd--~~~~---~~~l~~~L~~~~~~v~~~~~~~~~~~-------~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~ 86 (184)
+|+|+-. .+.. ...+..+|.+.|+.+.........+. ........+|++|+ -++|| .+++..+
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----lGGDG-T~L~aa~ 81 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV----VGGDG-NMLGAAR 81 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE----ECCcH-HHHHHHH
Confidence 4777643 2333 34556667677887775443222110 00111224688777 36777 3444333
Q ss_pred c--cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 87 L--EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 87 ~--~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
. ...+||+-+. .|-.+|+. .++.+++...++.++++....
T Consensus 82 ~~~~~~~Pilgin-------------~G~lGFl~-~~~~~~~~~~l~~i~~g~~~i 123 (292)
T PRK03378 82 VLARYDIKVIGIN-------------RGNLGFLT-DLDPDNALQQLSDVLEGHYIS 123 (292)
T ss_pred HhcCCCCeEEEEE-------------CCCCCccc-ccCHHHHHHHHHHHHcCCceE
Confidence 2 2356776553 36677877 677899999999998876533
No 193
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=76.92 E-value=27 Score=26.43 Aligned_cols=68 Identities=19% Similarity=0.144 Sum_probs=52.6
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEeCCCCC-------CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 46 KCNRAEIALDMLRMSKNGYDIVISDVHMPD-------MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-------~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
++++.+++.+... ..+|.|.+.--.|. ..|++.++++.....+|++.+.. -+.+.+...++.|+++.-
T Consensus 110 S~h~~eea~~A~~---~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGG-i~~~nv~~v~~~Ga~gVA 184 (211)
T COG0352 110 STHDLEEALEAEE---LGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGG-INLENVPEVLEAGADGVA 184 (211)
T ss_pred ecCCHHHHHHHHh---cCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcC-CCHHHHHHHHHhCCCeEE
Confidence 6667888887754 44999998775553 35888999887666799999865 568889999999999774
No 194
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=76.73 E-value=19 Score=23.73 Aligned_cols=92 Identities=18% Similarity=0.123 Sum_probs=52.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECC-HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNR-AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIM 95 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~-~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi 95 (184)
.+|.++|.++...+.+ ...|+.+....- -.+.++... -...+.+++...- +...+.++..++. .+..++++
T Consensus 22 ~~vvvid~d~~~~~~~----~~~~~~~i~gd~~~~~~l~~a~--i~~a~~vv~~~~~-d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 22 IDVVVIDRDPERVEEL----REEGVEVIYGDATDPEVLERAG--IEKADAVVILTDD-DEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp SEEEEEESSHHHHHHH----HHTTSEEEES-TTSHHHHHHTT--GGCESEEEEESSS-HHHHHHHHHHHHHHTTTSEEEE
T ss_pred CEEEEEECCcHHHHHH----HhcccccccccchhhhHHhhcC--ccccCEEEEccCC-HHHHHHHHHHHHHHCCCCeEEE
Confidence 5799999999775443 344565543221 233344333 2347888887641 1223344445554 45667776
Q ss_pred EEccCChHHHHHHHHcCCCceEe
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.+ .+......+.++|++..+.
T Consensus 95 ~~--~~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 95 RV--NDPENAELLRQAGADHVIS 115 (116)
T ss_dssp EE--SSHHHHHHHHHTT-SEEEE
T ss_pred EE--CCHHHHHHHHHCCcCEEEC
Confidence 65 3466667777889986553
No 195
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=76.67 E-value=23 Score=26.83 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=48.1
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCCC-C--HHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPDM-D--GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~~-~--g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+..+..+.+.. ...-+++.|+.--+. . .+++++++.....+|+|+=..-.+.+.+.++++.|+++.+.
T Consensus 142 ~~~~~~~~~~~--~g~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNS--FDYGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHh--cCCEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 44445555442 224688889865432 2 37788888766678988877777888888899999998875
No 196
>PRK07695 transcriptional regulator TenI; Provisional
Probab=76.20 E-value=29 Score=25.67 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=46.6
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEeCCCCC-------CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCce
Q 029986 46 KCNRAEIALDMLRMSKNGYDIVISDVHMPD-------MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-------~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
.+.+.+++.+.. +.++|.+++.-..+. ..|++.++.+....++|++.+..- +.+.+..++..|++++
T Consensus 101 s~~s~e~a~~a~---~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 101 SVHSLEEAIQAE---KNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred eCCCHHHHHHHH---HcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 556666665543 356899887643322 235677787765557899988665 7888889999999877
No 197
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=76.05 E-value=39 Score=27.15 Aligned_cols=111 Identities=11% Similarity=0.089 Sum_probs=65.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEEC---CHHHHH-HHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCN---RAEIAL-DMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMD 90 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~---~~~~~~-~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~ 90 (184)
.++++++.+-+. .+.+....+..+. .+.... +..+.+ +.+. ..|++++-... .+=|..+++.+. ..
T Consensus 210 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~----~~d~~v~~s~~-Egf~~~~lEAma--~G 281 (359)
T PRK09922 210 EWQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIK----NVSALLLTSKF-EGFPMTLLEAMS--YG 281 (359)
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHh----cCcEEEECCcc-cCcChHHHHHHH--cC
Confidence 456777766553 3445555554432 343332 222222 2222 25777764332 333566677664 46
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
+|||..-... ...+.+..|..+++..|-+.+++.+++..++....
T Consensus 282 ~Pvv~s~~~~---g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 282 IPCISSDCMS---GPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEV 326 (359)
T ss_pred CCEEEeCCCC---ChHHHccCCCceEEECCCCHHHHHHHHHHHHhCcc
Confidence 7887532022 23456677889999999999999999999877553
No 198
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=75.70 E-value=29 Score=27.60 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=59.9
Q ss_pred eEEEEe--CCHHH---HHHHHHHHHhcCCeEEEECCHHHHHHH-------HHhcCCCccEEEEeCCCCCCCHHHHHHHhc
Q 029986 19 RVLVVD--DDPIW---LRILEKMLRKCLYEVTKCNRAEIALDM-------LRMSKNGYDIVISDVHMPDMDGFKLHEQVG 86 (184)
Q Consensus 19 ~Ilivd--d~~~~---~~~l~~~L~~~~~~v~~~~~~~~~~~~-------l~~~~~~~dlvilD~~l~~~~g~~l~~~l~ 86 (184)
+|+|+- +.+.. ...+...|++.|+++....+....... .......+|++|+ -++|| .+++.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDG-t~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDG-TMLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcH-HHHHHHH
Confidence 477763 33333 345556666678876654432211110 0111234788887 36777 3444443
Q ss_pred c--cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 87 L--EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 87 ~--~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
. ..++|++-+. .|-.+|+. .+..+++...+..++++....
T Consensus 82 ~~~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~~~i 123 (291)
T PRK02155 82 QLAPYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGNYEE 123 (291)
T ss_pred HhcCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCCceE
Confidence 2 2467877553 46678888 788899999999998876433
No 199
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=75.58 E-value=36 Score=26.45 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHH
Q 029986 51 EIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130 (184)
Q Consensus 51 ~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l 130 (184)
++..+++. . .|++++-....++-|..+++.+. ..+|+|... .....+.+..|..+++.++-+.+++.+.+
T Consensus 254 ~~~~~~~~--~--ad~~i~ps~~~e~~~~~~~Ea~a--~G~Pvi~~~----~~~~~e~i~~~~~g~~~~~~d~~~l~~~i 323 (359)
T cd03823 254 EEIDDFYA--E--IDVLVVPSIWPENFPLVIREALA--AGVPVIASD----IGGMAELVRDGVNGLLFPPGDAEDLAAAL 323 (359)
T ss_pred HHHHHHHH--h--CCEEEEcCcccCCCChHHHHHHH--CCCCEEECC----CCCHHHHhcCCCcEEEECCCCHHHHHHHH
Confidence 45555544 2 57887754434556667777764 357877532 22344556677789999999999999999
Q ss_pred HHHHc
Q 029986 131 QHVAQ 135 (184)
Q Consensus 131 ~~~~~ 135 (184)
..++.
T Consensus 324 ~~l~~ 328 (359)
T cd03823 324 ERLID 328 (359)
T ss_pred HHHHh
Confidence 99876
No 200
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=75.44 E-value=42 Score=27.20 Aligned_cols=114 Identities=13% Similarity=0.103 Sum_probs=68.0
Q ss_pred CeEEEEeCCHHHHHHHH------HHHHhcCCeE-E-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCH-----HHHHHH
Q 029986 18 LRVLVVDDDPIWLRILE------KMLRKCLYEV-T-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG-----FKLHEQ 84 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~------~~L~~~~~~v-~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g-----~~l~~~ 84 (184)
+|+=|+.|++...-.+. +.|-+.|+.+ . ...+...+..+.. -+| +.++-+--|-++| -+.++.
T Consensus 168 iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~---~g~-~avmPl~~pIGsg~gv~~p~~i~~ 243 (326)
T PRK11840 168 VKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLED---AGA-VAVMPLGAPIGSGLGIQNPYTIRL 243 (326)
T ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHh---cCC-EEEeeccccccCCCCCCCHHHHHH
Confidence 34445555444333222 2333448877 3 4445666665543 345 5555533332222 234555
Q ss_pred hcccCCCCEEEEEccCChHHHHHHHHcCCCceE-----eCCCCHHHHHHHHHHHHc
Q 029986 85 VGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL-----LKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 85 l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l-----~kP~~~~~l~~~l~~~~~ 135 (184)
+...+++|||+=+.-..++.+..+++.|+++.+ .|--++-.+.+++..+..
T Consensus 244 ~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 244 IVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred HHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 544577999988888889999999999999997 344456666666665543
No 201
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=75.06 E-value=40 Score=26.77 Aligned_cols=106 Identities=17% Similarity=0.258 Sum_probs=64.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi 95 (184)
.+++++.+.+. ...+.......+. .+......++..+++. . .|++++-.. .+.-|..+++.+. ..+|+|.
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~--~--~d~~v~ps~-~E~~~~~~~EAma--~g~PvI~ 299 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLS--I--ADLFLLPSE-KESFGLAALEAMA--CGVPVVA 299 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHH--h--cCEEEeCCC-cCCCccHHHHHHH--cCCCEEE
Confidence 45666655443 2344555554433 3444444444444443 2 578877543 3444666666663 4678876
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
... ....+.+..|..+|+..|-+.+++.+.+..++.
T Consensus 300 s~~----~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 300 SNA----GGIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred eCC----CCchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 422 234566777889999999999999998888765
No 202
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.42 E-value=43 Score=26.78 Aligned_cols=91 Identities=11% Similarity=-0.065 Sum_probs=57.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc----C-C-eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCC
Q 029986 19 RVLVVDDDPIWLRILEKMLRKC----L-Y-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLP 92 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~----~-~-~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~ 92 (184)
.|+|=|.+-...-.+...++.. . . -...+.+.+++.+.+. .++|+|++|-. +-.+--+.++.++ ...
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~---aGaDiImLDnm-spe~l~~av~~~~---~~~ 250 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALA---HGAQSVLLDNF-TLDMMREAVRVTA---GRA 250 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHH---cCCCEEEECCC-CHHHHHHHHHhhc---CCe
Confidence 3777777776655555555432 1 1 2346888999999885 55899999943 3222222333332 233
Q ss_pred EEEEEccCChHHHHHHHHcCCCce
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
++-.+..-+.+.+......|+|-.
T Consensus 251 ~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 251 VLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEE
Confidence 555666777888888888999843
No 203
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=74.29 E-value=17 Score=30.71 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=41.3
Q ss_pred CCCccEEEEeCCCCC-CCHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCce
Q 029986 61 KNGYDIVISDVHMPD-MDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 61 ~~~~dlvilD~~l~~-~~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
+...|+|.+|..... ....+.++++++. +++||++ .+-.+.+.+..+.++||+..
T Consensus 234 ~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i 290 (450)
T TIGR01302 234 KAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGL 290 (450)
T ss_pred HhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEE
Confidence 356899999996543 3456788888655 6777776 45567888999999999866
No 204
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=74.29 E-value=6.9 Score=30.58 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=39.1
Q ss_pred HHHHHHHhc-ccCCCCEEEEEcc------CChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 78 GFKLHEQVG-LEMDLPVIMMSVD------GCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 78 g~~l~~~l~-~~~~~~iIi~~~~------~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
.+++++.++ ...++|+++++-. .-.....++.++|+++.+.-.+..++-......+
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~ 136 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAA 136 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHH
Confidence 466777887 6678999999742 2234667788999999999887776555544443
No 205
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=73.36 E-value=6.5 Score=28.94 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=46.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCC--CCC--HHHHHHHhcccCCCCEEE
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP--DMD--GFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~--~~~--g~~l~~~l~~~~~~~iIi 95 (184)
|++||........|..+|...|+++....+....++.+. ...||.||+.-.-. ..+ ...+++.+ ....||+-
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~--~~~~~~iilsgGP~~~~~~~~~~~~i~~~--~~~~PiLG 77 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIE--QLAPSHLVISPGPCTPNEAGISLAVIRHF--ADKLPILG 77 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHH--hcCCCeEEEcCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 899999999999999999988888876664432233343 23578888754221 112 23344443 23678876
Q ss_pred EE
Q 029986 96 MS 97 (184)
Q Consensus 96 ~~ 97 (184)
+-
T Consensus 78 IC 79 (191)
T PRK06774 78 VC 79 (191)
T ss_pred EC
Confidence 63
No 206
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=73.36 E-value=42 Score=29.58 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=32.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 63 GYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 63 ~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
+.+++++-..-+ .+...++...++ .|+.+|+.-+ .+........++|++..+..
T Consensus 464 ~A~~vv~~~~d~-~~n~~i~~~~r~~~p~~~IiaRa--~~~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 464 KAEAIVITCNEP-EDTMKIVELCQQHFPHLHILARA--RGRVEAHELLQAGVTQFSRE 518 (601)
T ss_pred cCCEEEEEeCCH-HHHHHHHHHHHHHCCCCeEEEEe--CCHHHHHHHHhCCCCEEEcc
Confidence 356666644322 223344455543 4677777655 45778888899999966543
No 207
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.34 E-value=35 Score=27.23 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=59.7
Q ss_pred eEEEEe--CCHH---HHHHHHHHHHhcCCeEEEECCHHH---HHH-------H--HHhcCCCccEEEEeCCCCCCCHHHH
Q 029986 19 RVLVVD--DDPI---WLRILEKMLRKCLYEVTKCNRAEI---ALD-------M--LRMSKNGYDIVISDVHMPDMDGFKL 81 (184)
Q Consensus 19 ~Ilivd--d~~~---~~~~l~~~L~~~~~~v~~~~~~~~---~~~-------~--l~~~~~~~dlvilD~~l~~~~g~~l 81 (184)
+|+|+- +.+. ....+..+|.+.|+.+........ ... . .......+|++|+ -++|| .+
T Consensus 7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGDG-T~ 81 (296)
T PRK04539 7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAV----LGGDG-TF 81 (296)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEE----ECCcH-HH
Confidence 477773 2333 344455666677877765421100 110 0 0000123677776 36777 34
Q ss_pred HHHhcc--cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 82 HEQVGL--EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 82 ~~~l~~--~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
++..+. ..++||+-+- .|-.+|+. .++.+++...+..++++.....
T Consensus 82 L~aa~~~~~~~~PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~~~~~ 129 (296)
T PRK04539 82 LSVAREIAPRAVPIIGIN-------------QGHLGFLT-QIPREYMTDKLLPVLEGKYLAE 129 (296)
T ss_pred HHHHHHhcccCCCEEEEe-------------cCCCeEee-ccCHHHHHHHHHHHHcCCceEE
Confidence 444332 2467887663 46788998 5888999999999988764433
No 208
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=73.28 E-value=37 Score=25.52 Aligned_cols=84 Identities=14% Similarity=0.123 Sum_probs=49.9
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCC---------CCHHHHHHHhcc-c-CCCCEEEEEccCChHHHHH---HHHcCCC
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPD---------MDGFKLHEQVGL-E-MDLPVIMMSVDGCTQDVMK---GVTHGAC 114 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~---------~~g~~l~~~l~~-~-~~~~iIi~~~~~~~~~~~~---a~~~ga~ 114 (184)
+....++... ..++|.|++|++-.. .+-.+++..++. . ....+++=.+..+.....+ +++.|++
T Consensus 9 ~~~~~~~~a~--~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~ 86 (221)
T PF03328_consen 9 NSPKMLEKAA--ASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGAD 86 (221)
T ss_dssp TSHHHHHHHH--TTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHH--hcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCCC
Confidence 3344555544 567999999997655 233344444432 2 2234444445555556666 9999999
Q ss_pred ceEeCCC-CHHHHHHHHHHHH
Q 029986 115 NYLLKPI-RIKELRNIWQHVA 134 (184)
Q Consensus 115 ~~l~kP~-~~~~l~~~l~~~~ 134 (184)
+++..-+ +.+++......+.
T Consensus 87 gI~lP~ves~~~~~~~~~~~~ 107 (221)
T PF03328_consen 87 GIVLPKVESAEDARQAVAALR 107 (221)
T ss_dssp EEEETT--SHHHHHHHHHHHS
T ss_pred eeeccccCcHHHHHHHHHHHh
Confidence 9876555 5667766666553
No 209
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=73.23 E-value=14 Score=29.29 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=43.4
Q ss_pred CHHHHHHHhcccCCCCEE--EEEccCChHHHHHHHHcCCCceE-----eCCCCHHHHHHHHHHHHcC
Q 029986 77 DGFKLHEQVGLEMDLPVI--MMSVDGCTQDVMKGVTHGACNYL-----LKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 77 ~g~~l~~~l~~~~~~~iI--i~~~~~~~~~~~~a~~~ga~~~l-----~kP~~~~~l~~~l~~~~~~ 136 (184)
.++++++++.+...+||+ ....-.+++.+..+++.|+++++ .+.-++.+..+.+..+..+
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 467788888665678998 55555688999999999999986 3444666666666665543
No 210
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=73.16 E-value=31 Score=26.29 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHhcCCCcc-EEEEeCCCCC---CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 48 NRAEIALDMLRMSKNGYD-IVISDVHMPD---MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 48 ~~~~~~~~~l~~~~~~~d-lvilD~~l~~---~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.+..+..+.+. +.+.| +++.|+.-.+ ..-++++++++....+|+++-..-.+.+.+..++..|++..+.
T Consensus 27 ~d~~~~a~~~~--~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 27 GDPVELAKRYN--EQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCHHHHHHHHH--HCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 36666666665 33455 6677776332 2236678888666678999888888888999999999887654
No 211
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=73.04 E-value=56 Score=27.57 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=36.2
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcC--CCccEEEEeC
Q 029986 17 GLRVLVVDDDPI---WLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK--NGYDIVISDV 71 (184)
Q Consensus 17 ~~~Ilivdd~~~---~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~--~~~dlvilD~ 71 (184)
+.+|.+++-|+. ..+.+..+-...|+.+..+.+..+..+.+.... ..+|+||+|.
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 457888887764 334455555556777777777766666654221 2589999997
No 212
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=72.85 E-value=37 Score=25.31 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcC-CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCC--------CCHHHHHHHhcccCCCCEEEEEccC
Q 029986 30 LRILEKMLRKCL-YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD--------MDGFKLHEQVGLEMDLPVIMMSVDG 100 (184)
Q Consensus 30 ~~~l~~~L~~~~-~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~--------~~g~~l~~~l~~~~~~~iIi~~~~~ 100 (184)
...+-..++..+ .-+.-+++.+++..... .++|+|= ..|.+ ...+++++++... ..|+|.=....
T Consensus 81 l~~li~~i~~~~~l~MADist~ee~~~A~~---~G~D~I~--TTLsGYT~~t~~~~pD~~lv~~l~~~-~~pvIaEGri~ 154 (192)
T PF04131_consen 81 LEELIREIKEKYQLVMADISTLEEAINAAE---LGFDIIG--TTLSGYTPYTKGDGPDFELVRELVQA-DVPVIAEGRIH 154 (192)
T ss_dssp HHHHHHHHHHCTSEEEEE-SSHHHHHHHHH---TT-SEEE---TTTTSSTTSTTSSHHHHHHHHHHHT-TSEEEEESS--
T ss_pred HHHHHHHHHHhCcEEeeecCCHHHHHHHHH---cCCCEEE--cccccCCCCCCCCCCCHHHHHHHHhC-CCcEeecCCCC
Confidence 344444455444 23457889999998865 5589554 33432 3468899999654 78877766777
Q ss_pred ChHHHHHHHHcCCCceEe
Q 029986 101 CTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 101 ~~~~~~~a~~~ga~~~l~ 118 (184)
+++.+.++++.||+..++
T Consensus 155 tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 155 TPEQAAKALELGAHAVVV 172 (192)
T ss_dssp SHHHHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHhcCCeEEEE
Confidence 899999999999998864
No 213
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=72.74 E-value=30 Score=26.60 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=44.6
Q ss_pred CCCccEEEEeCCCCCC--CHHHHHHHhcccC-CCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 61 KNGYDIVISDVHMPDM--DGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 61 ~~~~dlvilD~~l~~~--~g~~l~~~l~~~~-~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+.+.|.+-+|...++. -.++.+++++... ++|||.-.+-.+.+.+.+.+..||+..-.
T Consensus 159 ~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 159 DDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred HcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 5668999999766654 3578888887654 58888887777788999999999997643
No 214
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=72.70 E-value=32 Score=26.35 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=42.4
Q ss_pred cEEEEeCCCCCC---CHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 65 DIVISDVHMPDM---DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 65 dlvilD~~l~~~---~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.+++.|+..-+. -.+++++++....++|+++-..-.+.+.+..+++.|++..++
T Consensus 164 ~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 164 GIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred EEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 688888865432 236677888666688999888788889999999999998876
No 215
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=72.54 E-value=24 Score=30.15 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 48 NRAEIALDMLRMSKNGYDIVISDVHMPDMD-GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 48 ~~~~~~~~~l~~~~~~~dlvilD~~l~~~~-g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
.+..+-...+. ..+.|.|++|...+... -.+++++++.. +++|||+ ..-.+.+....+.++||+..-
T Consensus 224 ~~~~~ra~~Lv--~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 224 GDVGGKAKALL--DAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred ccHHHHHHHHH--HhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 34444444444 35689999999875433 35678888643 5777765 446678889999999998653
No 216
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=72.18 E-value=26 Score=23.30 Aligned_cols=71 Identities=21% Similarity=0.151 Sum_probs=45.4
Q ss_pred eCCHHHHHHHHHHHHhcCCeEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHhc-ccC-CCCEEEE
Q 029986 24 DDDPIWLRILEKMLRKCLYEVTKCN---RAEIALDMLRMSKNGYDIVISDVHMPDMD-GFKLHEQVG-LEM-DLPVIMM 96 (184)
Q Consensus 24 dd~~~~~~~l~~~L~~~~~~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~~-g~~l~~~l~-~~~-~~~iIi~ 96 (184)
+.++.-...+...++..|+++.... ...+..+.+. ...||+|.+........ ....+..++ ..+ ++++++=
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~--~~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvG 86 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAK--EEDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHH--HcCCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEe
Confidence 5566667778888999999887554 4455566555 46699999987665432 344444553 334 4555543
No 217
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=72.02 E-value=51 Score=26.61 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=52.9
Q ss_pred HHHHHhcCCe-EEEECCHHHHHHHHHhcCCCccEEEEeCCCC------CC-CHHHHHHHhcccCCCCEEEEEccCChHHH
Q 029986 34 EKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMP------DM-DGFKLHEQVGLEMDLPVIMMSVDGCTQDV 105 (184)
Q Consensus 34 ~~~L~~~~~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~------~~-~g~~l~~~l~~~~~~~iIi~~~~~~~~~~ 105 (184)
...++..|.. +..+++.+++...+. ..+|.|++--.-. .. +.+.++.+++...++|||.-..-.+...+
T Consensus 129 i~~l~~~gi~v~~~v~s~~~A~~a~~---~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~i 205 (330)
T PF03060_consen 129 IERLHAAGIKVIPQVTSVREARKAAK---AGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGI 205 (330)
T ss_dssp HHHHHHTT-EEEEEESSHHHHHHHHH---TT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHH
T ss_pred HHHHHHcCCccccccCCHHHHHHhhh---cCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHH
Confidence 3456666654 458899999988765 4589999863222 11 25677777766667899887777777888
Q ss_pred HHHHHcCCCceE
Q 029986 106 MKGVTHGACNYL 117 (184)
Q Consensus 106 ~~a~~~ga~~~l 117 (184)
..++..||++..
T Consensus 206 aaal~lGA~gV~ 217 (330)
T PF03060_consen 206 AAALALGADGVQ 217 (330)
T ss_dssp HHHHHCT-SEEE
T ss_pred HHHHHcCCCEee
Confidence 999999999986
No 218
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.83 E-value=36 Score=27.03 Aligned_cols=104 Identities=23% Similarity=0.181 Sum_probs=59.1
Q ss_pred eEEEEeCC-HHHH---HHHHHHHHhcCCeEEEECCHHHHHHH----HHhcCCCccEEEEeCCCCCCCHHHHHHHhcc--c
Q 029986 19 RVLVVDDD-PIWL---RILEKMLRKCLYEVTKCNRAEIALDM----LRMSKNGYDIVISDVHMPDMDGFKLHEQVGL--E 88 (184)
Q Consensus 19 ~Ilivdd~-~~~~---~~l~~~L~~~~~~v~~~~~~~~~~~~----l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~--~ 88 (184)
+|.|+-.. +... ..+..+|++.|+++.........+.. .......+|++|+ -++|| .+++..+. .
T Consensus 12 ~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGDG-T~L~aa~~~~~ 86 (287)
T PRK14077 12 KIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLIS----LGGDG-TLISLCRKAAE 86 (287)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEE----ECCCH-HHHHHHHHhcC
Confidence 47776432 2222 33445565667777654432221110 0110124788876 36777 34444432 2
Q ss_pred CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 89 MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 89 ~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
.++||+-+. .|-.+|+. .++.+++...+..+.++.....
T Consensus 87 ~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~y~ie 125 (287)
T PRK14077 87 YDKFVLGIH-------------AGHLGFLT-DITVDEAEKFFQAFFQGEFEIE 125 (287)
T ss_pred CCCcEEEEe-------------CCCcccCC-cCCHHHHHHHHHHHHcCCCeEE
Confidence 367877653 36678877 6788999999999988765443
No 219
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.76 E-value=49 Score=26.35 Aligned_cols=108 Identities=22% Similarity=0.215 Sum_probs=61.4
Q ss_pred CCCCeEEEEeC--CH---HHHHHHHHHHHhcCCeEEEECCHHHHHH-----HH--HhcCCCccEEEEeCCCCCCCHHHHH
Q 029986 15 PAGLRVLVVDD--DP---IWLRILEKMLRKCLYEVTKCNRAEIALD-----ML--RMSKNGYDIVISDVHMPDMDGFKLH 82 (184)
Q Consensus 15 ~~~~~Ilivdd--~~---~~~~~l~~~L~~~~~~v~~~~~~~~~~~-----~l--~~~~~~~dlvilD~~l~~~~g~~l~ 82 (184)
|...+|.|+-. .+ ...+.+...|++.++++.........+. .. ......+|+||+ -++|| .++
T Consensus 2 ~~~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDG-t~l 76 (295)
T PRK01231 2 PSFRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDG-SLL 76 (295)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcH-HHH
Confidence 33335777732 22 3445566667777888765443221110 00 001234788776 26777 233
Q ss_pred HHhc--ccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 83 EQVG--LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 83 ~~l~--~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
+..+ ...++||+-+. .|-.+|+. .+..+++...+..++++.....
T Consensus 77 ~~~~~~~~~~~Pvlgin-------------~G~lGFl~-~~~~~~~~~~l~~~~~g~~~i~ 123 (295)
T PRK01231 77 GAARALARHNVPVLGIN-------------RGRLGFLT-DIRPDELEFKLAEVLDGHYQEE 123 (295)
T ss_pred HHHHHhcCCCCCEEEEe-------------CCcccccc-cCCHHHHHHHHHHHHcCCceEE
Confidence 3332 13467887663 26677875 7888999999999988765433
No 220
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.47 E-value=31 Score=30.21 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=59.4
Q ss_pred CCeEEEEeC--CHHH---HHHHHHHHHhcCCeEEEECCHHHHHHH-HH------hcCCCccEEEEeCCCCCCCHHHHHHH
Q 029986 17 GLRVLVVDD--DPIW---LRILEKMLRKCLYEVTKCNRAEIALDM-LR------MSKNGYDIVISDVHMPDMDGFKLHEQ 84 (184)
Q Consensus 17 ~~~Ilivdd--~~~~---~~~l~~~L~~~~~~v~~~~~~~~~~~~-l~------~~~~~~dlvilD~~l~~~~g~~l~~~ 84 (184)
+++|.|+-. .+.. ...+..+|.+.++++.........+.. +. .....+|++|+ -++|| .+++.
T Consensus 290 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDG-T~L~a 364 (569)
T PRK14076 290 PTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIIS----IGGDG-TVLRA 364 (569)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEE----ECCcH-HHHHH
Confidence 456777743 2333 334455565667766654322211110 00 00113566665 26777 34444
Q ss_pred hcc--cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 85 VGL--EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 85 l~~--~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
.+. ...+||+-+ ..|-.+|+. .++.+++...+..++++.....
T Consensus 365 a~~~~~~~~PilGi-------------n~G~lGFL~-~~~~~~~~~~l~~~~~g~~~i~ 409 (569)
T PRK14076 365 SKLVNGEEIPIICI-------------NMGTVGFLT-EFSKEEIFKAIDSIISGEYEIE 409 (569)
T ss_pred HHHhcCCCCCEEEE-------------cCCCCCcCc-ccCHHHHHHHHHHHHcCCceEE
Confidence 432 236777755 346778888 7888999999999988765433
No 221
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=71.00 E-value=62 Score=27.55 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=62.1
Q ss_pred EeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCH----HHHH---HHhcc-cCCCCEE
Q 029986 23 VDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG----FKLH---EQVGL-EMDLPVI 94 (184)
Q Consensus 23 vdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g----~~l~---~~l~~-~~~~~iI 94 (184)
|--|..-.+.|...|...||.+.. . ....|+++++..--..+. ...+ +.++. .+..+|+
T Consensus 33 C~~N~~dse~~~~~l~~~G~~~~~-----------~--~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~iv 99 (467)
T PRK14329 33 CQMNFADSEIVASILQMAGYNTTE-----------N--LEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKKKNPKLIVG 99 (467)
T ss_pred CCCcHHHHHHHHHHHHHCcCEECC-----------C--cccCCEEEEeCcceechHHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 447888889999999988988753 1 234799999886554332 2233 33332 3455555
Q ss_pred EEEccCChHHHHHHHHc-CCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 95 MMSVDGCTQDVMKGVTH-GACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~-ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+.....+. .-...++. +..|+++.+-....+.+.+..+..+
T Consensus 100 vgGc~a~~-~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~~~ 141 (467)
T PRK14329 100 VLGCMAER-LKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVEEG 141 (467)
T ss_pred EECChhcC-cHHHHHhcCCCceEEECCCCHHHHHHHHHHHhcC
Confidence 54433322 22233343 4368999999888888888776543
No 222
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=70.94 E-value=32 Score=26.18 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=41.3
Q ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHh-cCCCccEEEEeCCCC
Q 029986 13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRM-SKNGYDIVISDVHMP 74 (184)
Q Consensus 13 ~~~~~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~-~~~~~dlvilD~~l~ 74 (184)
..|++-++.-||-++...+.-++.+++.|. .+..... -++++.+.. ....+|+||+|..-+
T Consensus 80 ~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~ 143 (219)
T COG4122 80 ALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKA 143 (219)
T ss_pred hCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCChh
Confidence 344345899999999999999999998765 2333331 234444432 246699999998533
No 223
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=70.91 E-value=36 Score=24.95 Aligned_cols=68 Identities=10% Similarity=-0.062 Sum_probs=49.0
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 46 KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
-+.+.+++..... .++|.+-++- .+. .|.++++.++.. +++|++.+..- +.+.+...++.|++....-
T Consensus 103 gv~t~~e~~~A~~---~Gad~i~~~p-~~~-~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 103 GVATPTEIMQALE---LGADIVKLFP-AEA-VGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred CcCCHHHHHHHHH---CCCCEEEEcC-Ccc-cCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEc
Confidence 4557888877764 5689998853 222 388889988543 46888777554 7888999999998877543
No 224
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.81 E-value=50 Score=26.01 Aligned_cols=103 Identities=18% Similarity=0.241 Sum_probs=57.1
Q ss_pred CeEEEEe--CCHHHH---HHHHHHHHhcCCeEEEECCHHHHHHHH--HhcCCCccEEEEeCCCCCCCHHHHHHHhcccCC
Q 029986 18 LRVLVVD--DDPIWL---RILEKMLRKCLYEVTKCNRAEIALDML--RMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMD 90 (184)
Q Consensus 18 ~~Ilivd--d~~~~~---~~l~~~L~~~~~~v~~~~~~~~~~~~l--~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~ 90 (184)
|||.|+- +.+... ..+..+| ..|+.+....+....+... ......+|++|+ -++|| .+++..+.. .
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGDG-T~L~a~~~~-~ 73 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEINADVIIT----IGGDG-TILRTLQRA-K 73 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcccccCCCEEEE----EcCcH-HHHHHHHHc-C
Confidence 4566663 233333 3344445 3477666543322221100 001123677776 26787 355544432 3
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
.||+-+. .|-.+|+. .++.+++...+..++++.....
T Consensus 74 ~PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~~~i~ 110 (271)
T PRK01185 74 GPILGIN-------------MGGLGFLT-EIEIDEVGSAIKKLIRGEYFID 110 (271)
T ss_pred CCEEEEE-------------CCCCccCc-ccCHHHHHHHHHHHHcCCcEEE
Confidence 4776552 36778988 6888999999999998765443
No 225
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=70.71 E-value=48 Score=25.81 Aligned_cols=90 Identities=17% Similarity=0.079 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhcCCe-EEEECCHHHHHHHHHhcCCCccEEEEeCC-CCC-CCHHHHHHHhc-ccC-CCCEEEEEccC
Q 029986 26 DPIWLRILEKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVH-MPD-MDGFKLHEQVG-LEM-DLPVIMMSVDG 100 (184)
Q Consensus 26 ~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~-l~~-~~g~~l~~~l~-~~~-~~~iIi~~~~~ 100 (184)
++...+.+.....+.|.+ +..+++.+++..... .++|+|-+.-. +.. ...++...++. ..+ ..++|..+.-.
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~---~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~ 221 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEVHDEEELERALK---LGAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIF 221 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH---cCCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 344444555555566765 457888888866553 45888776421 101 11245555553 233 34788888877
Q ss_pred ChHHHHHHHHcCCCceEe
Q 029986 101 CTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 101 ~~~~~~~a~~~ga~~~l~ 118 (184)
+++.+..+.+.|+++++.
T Consensus 222 t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 222 TPEDLKRLAKAGADAVLV 239 (260)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 899999999999999863
No 226
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=70.49 E-value=8.8 Score=30.18 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=37.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEEC-------CHHHHHHHHHhcCCCccEEEEeCCC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCN-------RAEIALDMLRMSKNGYDIVISDVHM 73 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~-------~~~~~~~~l~~~~~~~dlvilD~~l 73 (184)
|||+|+..+-..-..|...|...|+++...+ +.+...+.+. ...||+||-=.-+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~--~~~pd~Vin~aa~ 61 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLE--AFKPDVVINCAAY 61 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHH--HH--SEEEE----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHH--HhCCCeEecccee
Confidence 6899999999999999999998888777653 5566666665 3348988764433
No 227
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=70.36 E-value=43 Score=25.04 Aligned_cols=79 Identities=19% Similarity=0.067 Sum_probs=51.6
Q ss_pred HHhcCCeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCC--CCCHHHHHHHhccc--CCCCEEEEEccCChHHHHHHHHc
Q 029986 37 LRKCLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMP--DMDGFKLHEQVGLE--MDLPVIMMSVDGCTQDVMKGVTH 111 (184)
Q Consensus 37 L~~~~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~--~~~g~~l~~~l~~~--~~~~iIi~~~~~~~~~~~~a~~~ 111 (184)
....|..+ ..+++.+++..... ..+|.+.+.-.-. ...+++.++.++.. .+.|++....-.+.+.+.++.+.
T Consensus 117 ~~~~g~~~~v~v~~~~e~~~~~~---~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~ 193 (217)
T cd00331 117 ARELGMEVLVEVHDEEELERALA---LGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEA 193 (217)
T ss_pred HHHcCCeEEEEECCHHHHHHHHH---cCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHc
Confidence 34456654 35667777666543 4578887652110 12234667777543 46788888877778999999999
Q ss_pred CCCceEe
Q 029986 112 GACNYLL 118 (184)
Q Consensus 112 ga~~~l~ 118 (184)
|+++++.
T Consensus 194 Ga~gviv 200 (217)
T cd00331 194 GADAVLI 200 (217)
T ss_pred CCCEEEE
Confidence 9999973
No 228
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=69.47 E-value=15 Score=29.54 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=50.2
Q ss_pred CeEEEECCHHHHHHHHH-hcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCc
Q 029986 42 YEVTKCNRAEIALDMLR-MSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACN 115 (184)
Q Consensus 42 ~~v~~~~~~~~~~~~l~-~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~ 115 (184)
|++- ..+..+++.... ..+.+.|++++- |.+.-+++++.++...++|+..+-...+-..+..|.+.|..|
T Consensus 220 YQmd-p~n~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~~D 290 (323)
T PRK09283 220 YQMD-PANRREALREVALDIEEGADMVMVK---PALPYLDIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWID 290 (323)
T ss_pred cCCC-CCCHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCCC
Confidence 4443 345566665553 335678999985 567778889999876789999998777777777888877654
No 229
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=69.14 E-value=49 Score=25.25 Aligned_cols=94 Identities=10% Similarity=0.121 Sum_probs=57.4
Q ss_pred HHHHhcC-CeEEEECCHHHHHHHHHh-cCCCccEEEEeCCCCCCCHHHHHHHhccc--CCCC--EEEEEccCChHHHHHH
Q 029986 35 KMLRKCL-YEVTKCNRAEIALDMLRM-SKNGYDIVISDVHMPDMDGFKLHEQVGLE--MDLP--VIMMSVDGCTQDVMKG 108 (184)
Q Consensus 35 ~~L~~~~-~~v~~~~~~~~~~~~l~~-~~~~~dlvilD~~l~~~~g~~l~~~l~~~--~~~~--iIi~~~~~~~~~~~~a 108 (184)
..|.+.+ .-|....+.+++....+. .+.+.. .+.+.+...++.+.++.++.. ...| +|=..+=-+.+.+..+
T Consensus 10 ~~l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a 87 (222)
T PRK07114 10 TAMKATGMVPVFYHADVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALY 87 (222)
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHH
Confidence 4444444 345556667777766542 233344 566666666777777776321 1122 3333444567888889
Q ss_pred HHcCCCceEeCCCCHHHHHHHHH
Q 029986 109 VTHGACNYLLKPIRIKELRNIWQ 131 (184)
Q Consensus 109 ~~~ga~~~l~kP~~~~~l~~~l~ 131 (184)
.++||. |++.|.-..++.+..+
T Consensus 88 ~~aGA~-FiVsP~~~~~v~~~~~ 109 (222)
T PRK07114 88 IQLGAN-FIVTPLFNPDIAKVCN 109 (222)
T ss_pred HHcCCC-EEECCCCCHHHHHHHH
Confidence 999998 8888887777766555
No 230
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.10 E-value=57 Score=26.01 Aligned_cols=91 Identities=10% Similarity=-0.011 Sum_probs=58.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc----CC---eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCC
Q 029986 19 RVLVVDDDPIWLRILEKMLRKC----LY---EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDL 91 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~----~~---~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~ 91 (184)
.|+|=|.+-...-.+...++.. .+ ....+.+.+++.+.+. .++|+|.+|-.-| .+--+.++.++ ..
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~---agaDiImLDnmsp-e~l~~av~~~~---~~ 241 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAA---AGADIIMLDNMSL-EQIEQAITLIA---GR 241 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHH---cCCCEEEECCCCH-HHHHHHHHHhc---Cc
Confidence 4888888877666566655532 32 2346788999999885 4589999994322 22223333332 22
Q ss_pred CEEEEEccCChHHHHHHHHcCCCce
Q 029986 92 PVIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
.++-.+..-+.+.+......|+|..
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 3555566777888888888999844
No 231
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=68.85 E-value=60 Score=26.15 Aligned_cols=97 Identities=16% Similarity=0.012 Sum_probs=55.8
Q ss_pred EEEEeCCHHHHHHHHHHHH-------hcCC---eEEEECCHHHHHHHHH---hcCCCccEEEEeCC--CCC---CCHHHH
Q 029986 20 VLVVDDDPIWLRILEKMLR-------KCLY---EVTKCNRAEIALDMLR---MSKNGYDIVISDVH--MPD---MDGFKL 81 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~-------~~~~---~v~~~~~~~~~~~~l~---~~~~~~dlvilD~~--l~~---~~g~~l 81 (184)
|+|=|.+-...-.+...++ ..++ -...+.+.+++.+.+. ..+.++|+|++|-. -|. .+--++
T Consensus 173 vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l 252 (308)
T PLN02716 173 VMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSML 252 (308)
T ss_pred EEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHH
Confidence 7777776655544444332 2222 2346888999888875 11256899999954 121 122223
Q ss_pred HHHhcccCCCCEEEEEccCChHHHHHHHHcCCCce
Q 029986 82 HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 82 ~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
.+.+........+-.+..-+.+.+......|+|..
T Consensus 253 ~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 253 KEAVELINGRFETEASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred HHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 33222212223466677777888888888898843
No 232
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=68.72 E-value=11 Score=27.75 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=26.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCN 48 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~ 48 (184)
.+||+|+|.....-..+..+|+..|+++....
T Consensus 1 ~~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 1 ATKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred CcEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 36899999888888889999999988776655
No 233
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=68.53 E-value=36 Score=25.45 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=42.7
Q ss_pred ccEE-EEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE--eCCCCHHHHHHHHHHH
Q 029986 64 YDIV-ISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL--LKPIRIKELRNIWQHV 133 (184)
Q Consensus 64 ~dlv-ilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l--~kP~~~~~l~~~l~~~ 133 (184)
.+.+ ++|....-...++.++.++...++||++..--.+...+..++++||+..+ ..-++.+.+.+.+...
T Consensus 45 A~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 45 AAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred CCEEEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 4444 44544444455677777765567898865433444578889999999887 2223335555555544
No 234
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=68.51 E-value=50 Score=25.17 Aligned_cols=58 Identities=22% Similarity=0.233 Sum_probs=41.6
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCCe--E-EEECCHHHHHHHHHhc--CCCccEEEEeCC
Q 029986 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYE--V-TKCNRAEIALDMLRMS--KNGYDIVISDVH 72 (184)
Q Consensus 15 ~~~~~Ilivdd~~~~~~~l~~~L~~~~~~--v-~~~~~~~~~~~~l~~~--~~~~dlvilD~~ 72 (184)
+..-+|.-+|-++...+..++.++..|+. + ....+..+.+..+... ...+|+||+|..
T Consensus 91 ~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 91 PEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 33458999999999999989999887652 2 2455666666655322 246999999975
No 235
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=68.46 E-value=29 Score=27.22 Aligned_cols=95 Identities=14% Similarity=0.008 Sum_probs=57.0
Q ss_pred eEEEEeCCHHHHHHHHHHHH---h-cC---CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCC
Q 029986 19 RVLVVDDDPIWLRILEKMLR---K-CL---YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDL 91 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~---~-~~---~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~ 91 (184)
.|+|-|.+......+...+. + .+ .-...+++.+++.+.+. .++|+|.+|-.-|+. --+.++.++..+++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~---~gaD~I~ld~~~~e~-l~~~v~~i~~~~~i 228 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALE---AGADIIMLDNMSPEE-LKEAVKLLKGLPRV 228 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHH---cCCCEEEECCCCHHH-HHHHHHHhccCCCe
Confidence 47777777555443333222 2 23 23347788888888875 458999998754421 11233333332355
Q ss_pred CEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 92 PVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
|+.+ +..-+.+.+....+.|++.+.+
T Consensus 229 ~i~a-sGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 229 LLEA-SGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred EEEE-ECCCCHHHHHHHHHcCCCEEEE
Confidence 5444 4556788888999999997653
No 236
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=68.44 E-value=46 Score=25.83 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCCcc-EEEEeCCCCC---CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHH-HcCCCceE
Q 029986 50 AEIALDMLRMSKNGYD-IVISDVHMPD---MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGV-THGACNYL 117 (184)
Q Consensus 50 ~~~~~~~l~~~~~~~d-lvilD~~l~~---~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~-~~ga~~~l 117 (184)
..+..+.+. +.+++ +++.|+.-.+ +-.+++++++....++|+|.-..-.+.+.+..++ ..|+++.+
T Consensus 154 ~~e~~~~~~--~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 154 PLELAKEYE--ALGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred HHHHHHHHH--HcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 445555554 33444 6666664322 2236778888766789999888788888898988 78998875
No 237
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=68.35 E-value=46 Score=24.61 Aligned_cols=101 Identities=19% Similarity=0.219 Sum_probs=52.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc--C-------------CeEEEECCHHHHHHHHHh-cCCCccEEEEeCCC-CCCCHHHH
Q 029986 19 RVLVVDDDPIWLRILEKMLRKC--L-------------YEVTKCNRAEIALDMLRM-SKNGYDIVISDVHM-PDMDGFKL 81 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~--~-------------~~v~~~~~~~~~~~~l~~-~~~~~dlvilD~~l-~~~~g~~l 81 (184)
+..||..-+..++...+++.-+ | -.+..+.+.+++++.+.. ....|-+|..+... ++.-+++-
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~ 123 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAE 123 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHH
Confidence 5778888888888877777632 2 136789999999999874 34558888888873 33334444
Q ss_pred HHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCC
Q 029986 82 HEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR 122 (184)
Q Consensus 82 ~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~ 122 (184)
++++-...+-|++++.... .+...+.++ ..||++.|+.
T Consensus 124 lr~~l~~~~~P~LllFGTG-wGL~~ev~~--~~D~iLePI~ 161 (185)
T PF09936_consen 124 LRRMLEEEDRPVLLLFGTG-WGLAPEVME--QCDYILEPIR 161 (185)
T ss_dssp HHHHHHH--S-EEEEE--T-T---HHHHT--T-SEEB--TT
T ss_pred HHHHHhccCCeEEEEecCC-CCCCHHHHH--hcCeeEcccc
Confidence 4433233456777775543 566666554 5679999984
No 238
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=68.23 E-value=68 Score=26.55 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=68.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEEC--CHHHHHHHHHhcCCCccEEEEeCCCC-----CCCHHHHHHHhcc
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCN--RAEIALDMLRMSKNGYDIVISDVHMP-----DMDGFKLHEQVGL 87 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~--~~~~~~~~l~~~~~~~dlvilD~~l~-----~~~g~~l~~~l~~ 87 (184)
..+..|+.+-+. .+.+...+++.|. .+.... +.++..+++. . .|+.++-.... ++-+..+++.+.
T Consensus 253 ~~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~--~--aDv~v~pS~~~~~g~~Eg~p~~llEAma- 326 (406)
T PRK15427 253 AFRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLD--D--ADVFLLPSVTGADGDMEGIPVALMEAMA- 326 (406)
T ss_pred CEEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHH--h--CCEEEECCccCCCCCccCccHHHHHHHh-
Confidence 467777777654 4556777766553 233322 3455666655 2 58888754321 222455666653
Q ss_pred cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 88 EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 88 ~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
..+|||.... ....+.+..|..+++..|-+.+++.+.+..++.
T Consensus 327 -~G~PVI~t~~----~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 -VGIPVVSTLH----SGIPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred -CCCCEEEeCC----CCchhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 4678876422 234456778899999999999999999998876
No 239
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=68.22 E-value=53 Score=26.89 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=49.4
Q ss_pred EEECCHHHHHHHHHhcCCCccEEEEeCCCCC-------CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 45 TKCNRAEIALDMLRMSKNGYDIVISDVHMPD-------MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-------~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
.++++.+++..... .++|.|++.-..+. .-|++.++.+.....+|++.+..- +.+.+..++.+|++++.
T Consensus 245 ~S~Hs~~e~~~A~~---~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI-~~~ni~~l~~~Ga~gVA 320 (347)
T PRK02615 245 RSTTNPEEMAKAIA---EGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGI-DKSNIPEVLQAGAKRVA 320 (347)
T ss_pred EecCCHHHHHHHHH---cCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCcEEE
Confidence 46677777766653 46899987554442 246788888865567999988654 57777888999998875
No 240
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=68.18 E-value=74 Score=26.94 Aligned_cols=116 Identities=9% Similarity=0.076 Sum_probs=57.5
Q ss_pred CCeEEEEeCCHHHH---HHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCC--CCC-CCHHHHHHHh-ccc-
Q 029986 17 GLRVLVVDDDPIWL---RILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH--MPD-MDGFKLHEQV-GLE- 88 (184)
Q Consensus 17 ~~~Ilivdd~~~~~---~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~--l~~-~~g~~l~~~l-~~~- 88 (184)
+.+|.+++-|+... +.+..+....|..+....+...+.+.+. ...+|+||+|.- ++. .+..+-+..+ +..
T Consensus 252 G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~--~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~ 329 (432)
T PRK12724 252 GKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA--RDGSELILIDTAGYSHRNLEQLERMQSFYSCFG 329 (432)
T ss_pred CCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH--hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhc
Confidence 45788888877333 2333333444665555555566666655 356899999971 111 1122222222 211
Q ss_pred ---CCCCEEEEEccCChHHHHHHHH----cCCCceE-eCCCCHHHHHHHHHHHH
Q 029986 89 ---MDLPVIMMSVDGCTQDVMKGVT----HGACNYL-LKPIRIKELRNIWQHVA 134 (184)
Q Consensus 89 ---~~~~iIi~~~~~~~~~~~~a~~----~ga~~~l-~kP~~~~~l~~~l~~~~ 134 (184)
+.-.++++++.........+.+ .|.++.+ +|=-.....-.++..+.
T Consensus 330 ~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~~G~il~i~~ 383 (432)
T PRK12724 330 EKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGSFLELAD 383 (432)
T ss_pred CCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCCccHHHHHHH
Confidence 2234566665555544444333 4566665 33322333444444443
No 241
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=68.16 E-value=57 Score=25.61 Aligned_cols=109 Identities=20% Similarity=0.224 Sum_probs=64.7
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCC
Q 029986 17 GLRVLVVDDDPI---WLRILEKMLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDL 91 (184)
Q Consensus 17 ~~~Ilivdd~~~---~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~ 91 (184)
+.++.++.+.+. ..+.+...+.+.+. .+......++..+.+. . .|++++-....++-|..+++.+. ..+
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~--~--ad~~i~ps~~~e~~~~~l~EA~a--~G~ 289 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYA--L--ADIVVSASTEPEAFGRTAVEAQA--MGR 289 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHH--h--CCEEEecCCCCCCCchHHHHHHh--cCC
Confidence 456777765432 33334444444332 3444444444555554 2 57877754344555666777663 467
Q ss_pred CEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 92 PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
|+|+.... ...+.+..|..+++..|-+.+++.+.+..++.
T Consensus 290 PvI~~~~~----~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 290 PVIASDHG----GARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred CEEEcCCC----CcHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 88754322 23455667778999999999999999865544
No 242
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=68.14 E-value=9.2 Score=28.13 Aligned_cols=87 Identities=10% Similarity=0.068 Sum_probs=52.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCC--CCC--HHHHHHHhcccCCCCEEE
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP--DMD--GFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~--~~~--g~~l~~~l~~~~~~~iIi 95 (184)
|+++|........|..+|...|+++....+.+..++.+. ...||.||+--.-. ... ..++++.+ ....|++-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~--~~~~d~iils~GPg~p~~~~~~~~~~~~~--~~~~PiLG 77 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADID--ALKPQKIVISPGPCTPDEAGISLDVIRHY--AGRLPILG 77 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHH--hcCCCEEEEcCCCCChHHCCccHHHHHHh--cCCCCEEE
Confidence 899999999999999999998888776665432233333 23588888854322 122 23344443 24678776
Q ss_pred EEccCChHHHHHHHHcCCC
Q 029986 96 MSVDGCTQDVMKGVTHGAC 114 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~ 114 (184)
+- -+...-+...|+.
T Consensus 78 IC----lG~Q~la~a~Gg~ 92 (187)
T PRK08007 78 VC----LGHQAMAQAFGGK 92 (187)
T ss_pred EC----HHHHHHHHHcCCE
Confidence 63 3333334444554
No 243
>PRK10742 putative methyltransferase; Provisional
Probab=67.84 E-value=35 Score=26.60 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=40.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc------CC----eEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC------LY----EVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~------~~----~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~ 77 (184)
+.+|..+|.++.....++.-|+.. +. .+. ...+..+.+.. ....+|+|++|-..|...
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~---~~~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRPQVVYLDPMFPHKQ 178 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh---CCCCCcEEEECCCCCCCc
Confidence 457999999999999999999873 21 122 23344444443 234699999999877643
No 244
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=67.76 E-value=81 Score=27.27 Aligned_cols=98 Identities=17% Similarity=0.232 Sum_probs=60.5
Q ss_pred CeEEEEeCCH---HHHHHHHHHHHhc--CCeEE--EECCHHHHHHHHHhcCCCccEEEEeC--------CC------CCC
Q 029986 18 LRVLVVDDDP---IWLRILEKMLRKC--LYEVT--KCNRAEIALDMLRMSKNGYDIVISDV--------HM------PDM 76 (184)
Q Consensus 18 ~~Ilivdd~~---~~~~~l~~~L~~~--~~~v~--~~~~~~~~~~~l~~~~~~~dlvilD~--------~l------~~~ 76 (184)
.-|+++|-.. .....+-+.+++. +..+. -+.+.+++..++. .+.|.|.+-+ +. |..
T Consensus 261 ~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~---aGaD~i~vg~g~G~~~~t~~~~~~g~~~~ 337 (505)
T PLN02274 261 VDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ---AGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH---cCcCEEEECCCCCccccCccccccCCCcc
Confidence 4566666432 2222233444432 23432 4777888887764 5689887742 11 122
Q ss_pred CHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 77 DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 77 ~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
..+..+..+.....+|||.=..-.+...+.+|+.+||+....
T Consensus 338 ~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 338 TAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred cHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 344445555444578998888888899999999999998763
No 245
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=67.74 E-value=16 Score=29.31 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=48.4
Q ss_pred CCHHHHHHHHH-hcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCce
Q 029986 48 NRAEIALDMLR-MSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 48 ~~~~~~~~~l~-~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
.+..+++.... ..+.+.|++++- |.+.-+++++.++...++|+..+-...+-..++.|.+.|..|+
T Consensus 222 ~n~~eAlre~~~Di~EGAD~lMVK---Pal~YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d~ 288 (320)
T cd04823 222 ANSREALREVALDIAEGADMVMVK---PGMPYLDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLDE 288 (320)
T ss_pred CCHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCCcH
Confidence 35566665553 235678999885 5667788899987767899999988777777888888877654
No 246
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=67.58 E-value=81 Score=27.18 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=23.7
Q ss_pred CCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 89 MDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 89 ~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.++|+|.=..-.+...+.+|+.+||+....
T Consensus 343 ~~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 343 RGVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred cCCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 457777655677889999999999998764
No 247
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=67.31 E-value=38 Score=26.62 Aligned_cols=56 Identities=13% Similarity=0.238 Sum_probs=38.8
Q ss_pred HHHHHHHhc-ccCCCCEEEEEccCCh-------HHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 78 GFKLHEQVG-LEMDLPVIMMSVDGCT-------QDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 78 g~~l~~~l~-~~~~~~iIi~~~~~~~-------~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
-+++++.++ ....+|+++++- .++ ....++.+.|+++.++-.+..++-......+.
T Consensus 81 ~lel~~~~r~~~~~~Pivlm~Y-~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~ 144 (265)
T COG0159 81 TLELVEEIRAKGVKVPIVLMTY-YNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAE 144 (265)
T ss_pred HHHHHHHHHhcCCCCCEEEEEe-ccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHH
Confidence 355677776 346889998863 233 44668899999999998777776655555444
No 248
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=67.21 E-value=32 Score=28.21 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=42.5
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPDMD-GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~~~-g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+..+-.+.+. +...|++++|....... -+++++++++. ++++|| ..+-.+.+.+...+++||+...+
T Consensus 108 ~~~er~~~L~--~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aGad~vkV 176 (352)
T PF00478_consen 108 DDFERAEALV--EAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAGADAVKV 176 (352)
T ss_dssp CHHHHHHHHH--HTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHH--HcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcCCCEEEE
Confidence 3445555544 34689999998654433 46678888644 556665 45667788899999999997764
No 249
>PRK14098 glycogen synthase; Provisional
Probab=67.11 E-value=81 Score=26.99 Aligned_cols=111 Identities=5% Similarity=0.054 Sum_probs=62.4
Q ss_pred CCeEEEEeCC-HHHHHHHHHHHHhcCCeEEE--ECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCE
Q 029986 17 GLRVLVVDDD-PIWLRILEKMLRKCLYEVTK--CNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~-~~~~~~l~~~L~~~~~~v~~--~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~i 93 (184)
+.+++|+.+- ....+.++.+.++.+-.+.. .-+......++. ..|+.++-.. ...-|...++.++ ..+|+
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a----~aDi~l~PS~-~E~~Gl~~lEAma--~G~pp 408 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIA----GLDMLLMPGK-IESCGMLQMFAMS--YGTIP 408 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHH----hCCEEEeCCC-CCCchHHHHHHHh--CCCCe
Confidence 4567777653 33455666665554322322 223333444443 2588887543 3445665555553 45566
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
|+.......+.+.+....|..+|+..|.+.++|.+++..++
T Consensus 409 Vv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l 449 (489)
T PRK14098 409 VAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEAL 449 (489)
T ss_pred EEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHH
Confidence 65433222232222222367899999999999999988765
No 250
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=67.09 E-value=12 Score=27.51 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=45.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCC--CCCC--HHHHHHHhcccCCCCEEE
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM--PDMD--GFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l--~~~~--g~~l~~~l~~~~~~~iIi 95 (184)
|+++|........+..+|...|+.+....+.....+.+. +..||.||+--.- |... ..++++.+ ....||+-
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~--~~~~d~iilsgGpg~p~~~~~~~~~i~~~--~~~~PvLG 77 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIE--ALLPLLIVISPGPCTPNEAGISLEAIRHF--AGKLPILG 77 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHH--hcCCCEEEEcCCCCChhhcchhHHHHHHh--ccCCCEEE
Confidence 899999999999999999998888776553322233333 2348877763211 1111 23445544 24678876
Q ss_pred EE
Q 029986 96 MS 97 (184)
Q Consensus 96 ~~ 97 (184)
+.
T Consensus 78 IC 79 (188)
T TIGR00566 78 VC 79 (188)
T ss_pred EC
Confidence 63
No 251
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=66.89 E-value=55 Score=26.28 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=52.1
Q ss_pred CCCeEEEEeCCHHHH-HHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC--CCCCC-----CHHHHHHHhcc
Q 029986 16 AGLRVLVVDDDPIWL-RILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV--HMPDM-----DGFKLHEQVGL 87 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~-~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~--~l~~~-----~g~~l~~~l~~ 87 (184)
...+|+++|..|... ..+...|.+.|..+....+..-+.-+ . . .|.||+.. -+.++ .|--.+..+.+
T Consensus 145 k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m-~--~--vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak 219 (310)
T PRK08535 145 KDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFM-K--D--VDKVVVGADAITANGAVINKIGTSQIALAAH 219 (310)
T ss_pred CeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHH-H--h--CCEEEECccEEecCCCEEeHHhHHHHHHHHH
Confidence 457899999988643 34567788889988888765444433 2 2 78888744 33333 35555555555
Q ss_pred cCCCCEEEEEcc
Q 029986 88 EMDLPVIMMSVD 99 (184)
Q Consensus 88 ~~~~~iIi~~~~ 99 (184)
..++|+++++..
T Consensus 220 ~~~vPv~V~a~~ 231 (310)
T PRK08535 220 EARVPFMVAAET 231 (310)
T ss_pred HhCCCEEEeccc
Confidence 678999988653
No 252
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=66.69 E-value=48 Score=24.25 Aligned_cols=86 Identities=19% Similarity=0.058 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCeEE----EECCHHHHHHHHHhcCCCccEEEEeCCC-C----CCCHHHHHHHhcccCCCCEEEEEcc
Q 029986 29 WLRILEKMLRKCLYEVT----KCNRAEIALDMLRMSKNGYDIVISDVHM-P----DMDGFKLHEQVGLEMDLPVIMMSVD 99 (184)
Q Consensus 29 ~~~~l~~~L~~~~~~v~----~~~~~~~~~~~l~~~~~~~dlvilD~~l-~----~~~g~~l~~~l~~~~~~~iIi~~~~ 99 (184)
....+.+..++.|..+. ...+..+....+ ...+|.+.+...- + ...+.+.+++++...+.|+.+...-
T Consensus 91 ~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~---~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI 167 (202)
T cd04726 91 TIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLL---KLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGI 167 (202)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHH---HCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCc
Confidence 34445556666665543 445667776643 3457888774211 1 2345666777654457788776544
Q ss_pred CChHHHHHHHHcCCCceEe
Q 029986 100 GCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 100 ~~~~~~~~a~~~ga~~~l~ 118 (184)
+.+.+..+++.||+.++.
T Consensus 168 -~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 168 -TPDTLPEFKKAGADIVIV 185 (202)
T ss_pred -CHHHHHHHHhcCCCEEEE
Confidence 578888999999998864
No 253
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=66.64 E-value=52 Score=24.76 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCCccEE-EEeCCCCC---CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 50 AEIALDMLRMSKNGYDIV-ISDVHMPD---MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 50 ~~~~~~~l~~~~~~~dlv-ilD~~l~~---~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
..+..+.+. +.+++-+ +.+....+ +-.+++++++.+..++|++.-..-.+.+.+..+++.|+++.+.
T Consensus 148 ~~~~~~~~~--~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 148 LEELAKRFE--ELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred HHHHHHHHH--HcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 444455444 3345544 55553322 2236788888665678999888777788888999999999864
No 254
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=66.55 E-value=40 Score=28.10 Aligned_cols=63 Identities=29% Similarity=0.424 Sum_probs=45.5
Q ss_pred cCCCCCeEEEEeCCHHHHHHHH--HHHHhc------CCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCC
Q 029986 13 QFPAGLRVLVVDDDPIWLRILE--KMLRKC------LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD 77 (184)
Q Consensus 13 ~~~~~~~Ilivdd~~~~~~~l~--~~L~~~------~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~ 77 (184)
.+|.-..|-.||=||...+.-+ ..|.+. +-.+..+. +++..+++.....+|.+|+|+-=|+..
T Consensus 309 kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--dDAf~wlr~a~~~fD~vIVDl~DP~tp 379 (508)
T COG4262 309 KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--DDAFQWLRTAADMFDVVIVDLPDPSTP 379 (508)
T ss_pred hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe--ccHHHHHHhhcccccEEEEeCCCCCCc
Confidence 3454567999999999888777 555543 23455554 678888887677899999999766654
No 255
>PRK08999 hypothetical protein; Provisional
Probab=66.23 E-value=48 Score=26.30 Aligned_cols=69 Identities=20% Similarity=0.227 Sum_probs=49.3
Q ss_pred EEECCHHHHHHHHHhcCCCccEEEEeCCCCCC-------CHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 45 TKCNRAEIALDMLRMSKNGYDIVISDVHMPDM-------DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~-------~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
.++++.+++.... +..+|.+++.-..+.. -|++.++.+....++||+.+..- +.+.+..+.++|++++-
T Consensus 231 ~S~h~~~~~~~a~---~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~~g~~gva 306 (312)
T PRK08999 231 ASCHDAEELARAQ---RLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEAREHGAQGIA 306 (312)
T ss_pred EecCCHHHHHHHH---hcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHhCCCEEE
Confidence 4567777765543 3458999887654422 36777888765668999999754 67788889999998764
No 256
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=66.11 E-value=74 Score=26.19 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=39.9
Q ss_pred CeEEEEeCCHHH-----HHHHHHHHHhcCCeEEEEC---------CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHH
Q 029986 18 LRVLVVDDDPIW-----LRILEKMLRKCLYEVTKCN---------RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHE 83 (184)
Q Consensus 18 ~~Ilivdd~~~~-----~~~l~~~L~~~~~~v~~~~---------~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~ 83 (184)
-|++||-+.... .+.+...|+..|+++..+. +..++.+.++ ...+|+||- +.+++-++..+
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~--~~~~D~IIa---iGGGS~iD~aK 103 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCK--EEKVDFILA---VGGGSVIDSAK 103 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHH--HcCCCEEEE---eCChHHHHHHH
Confidence 478888775433 3567788887777766554 2345555555 456898774 34666666666
Q ss_pred Hh
Q 029986 84 QV 85 (184)
Q Consensus 84 ~l 85 (184)
-+
T Consensus 104 ~i 105 (382)
T cd08187 104 AI 105 (382)
T ss_pred HH
Confidence 54
No 257
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=66.08 E-value=88 Score=27.07 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=41.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhcc--cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 63 GYDIVISDVHMPDMDGFKLHEQVGL--EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 63 ~~dlvilD~~l~~~~g~~l~~~l~~--~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
.+|+||+ -++|| .+++..+. ...+||+-+ ..|-.+|+. ++..+++...+..++++....
T Consensus 262 ~~DlVIs----iGGDG-TlL~Aar~~~~~~iPILGI-------------N~G~LGFLt-~i~~~e~~~~Le~il~G~y~I 322 (508)
T PLN02935 262 KVDLVIT----LGGDG-TVLWAASMFKGPVPPVVPF-------------SMGSLGFMT-PFHSEQYRDCLDAILKGPISI 322 (508)
T ss_pred CCCEEEE----ECCcH-HHHHHHHHhccCCCcEEEE-------------eCCCcceec-ccCHHHHHHHHHHHHcCCceE
Confidence 3677776 36777 34444432 235677644 357888985 789999999999999876544
Q ss_pred CC
Q 029986 141 EE 142 (184)
Q Consensus 141 ~~ 142 (184)
.+
T Consensus 323 e~ 324 (508)
T PLN02935 323 TL 324 (508)
T ss_pred EE
Confidence 43
No 258
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=65.99 E-value=19 Score=28.98 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=50.1
Q ss_pred CeEEEECCHHHHHHHHH-hcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCc
Q 029986 42 YEVTKCNRAEIALDMLR-MSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACN 115 (184)
Q Consensus 42 ~~v~~~~~~~~~~~~l~-~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~ 115 (184)
|++- ..+..+++.... ..+.+.|++++- |++.-+++++.++...++|+..+-...+-..++.|.+.|..|
T Consensus 221 YQmd-p~n~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d 291 (322)
T PRK13384 221 YQLD-YANGRQALLEALLDEAEGADILMVK---PGTPYLDVLSRLRQETHLPLAAYQVGGEYAMIKFAALAGALD 291 (322)
T ss_pred ccCC-CCCHHHHHHHHHhhHhhCCCEEEEc---CCchHHHHHHHHHhccCCCEEEEEchHHHHHHHHHHHcCCcc
Confidence 4443 335556655543 335678999885 566778889999877789999998777777788888887765
No 259
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=65.87 E-value=68 Score=25.68 Aligned_cols=91 Identities=11% Similarity=0.041 Sum_probs=55.2
Q ss_pred EEEEeCCHHHHHHHHHHHHh----cC--CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCE
Q 029986 20 VLVVDDDPIWLRILEKMLRK----CL--YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPV 93 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~----~~--~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~i 93 (184)
|+|=|.+-...-.+...+++ .. .....+.+.+++.+.+. .++|+|.+|-.-| .+--+.++.++ .-..
T Consensus 182 iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~---~gaDiI~LDn~s~-e~~~~av~~~~---~~~~ 254 (296)
T PRK09016 182 FLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALK---AGADIIMLDNFTT-EQMREAVKRTN---GRAL 254 (296)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH---cCCCEEEeCCCCh-HHHHHHHHhhc---CCeE
Confidence 56666665555445555532 11 23457888999999886 4589999995433 22222333322 2234
Q ss_pred EEEEccCChHHHHHHHHcCCCceE
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l 117 (184)
+-.+..-+.+.+.+..+.|+|.+-
T Consensus 255 ieaSGGI~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 255 LEVSGNVTLETLREFAETGVDFIS 278 (296)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEE
Confidence 555666777888888899998543
No 260
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=65.40 E-value=56 Score=24.52 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=56.8
Q ss_pred HHHHhcCC-eEEEECCHHHHHHHHHh-cCCCccEEEEeCCCCCCCHHHHHHHhcccCCCC-EEEEEccCChHHHHHHHHc
Q 029986 35 KMLRKCLY-EVTKCNRAEIALDMLRM-SKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLP-VIMMSVDGCTQDVMKGVTH 111 (184)
Q Consensus 35 ~~L~~~~~-~v~~~~~~~~~~~~l~~-~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~-iIi~~~~~~~~~~~~a~~~ 111 (184)
+.|...+. -+....+.+++.+.... .+.+.. ++.+.+...++.+.++.++...+.+ +|=..+--+.+.+..+.++
T Consensus 5 ~~l~~~~~~~v~r~~~~~~~~~~~~a~~~gGi~--~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~a 82 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGALIEAGFR--AIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADA 82 (206)
T ss_pred hHHHhCCEEEEEeCCCHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHc
Confidence 44544432 34445556666665542 133344 5666667777888888885443333 3333334456788889999
Q ss_pred CCCceEeCCCCHHHHHHHHH
Q 029986 112 GACNYLLKPIRIKELRNIWQ 131 (184)
Q Consensus 112 ga~~~l~kP~~~~~l~~~l~ 131 (184)
||+ |+.-|....++.+..+
T Consensus 83 GA~-fivsp~~~~~v~~~~~ 101 (206)
T PRK09140 83 GGR-LIVTPNTDPEVIRRAV 101 (206)
T ss_pred CCC-EEECCCCCHHHHHHHH
Confidence 997 7777887777766655
No 261
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=64.92 E-value=69 Score=27.45 Aligned_cols=98 Identities=23% Similarity=0.276 Sum_probs=55.9
Q ss_pred CCeEEEEeCC-H---HHHHHHHHHHHhc-CCe--EEEECCHHHHHHHHHhcCCCccEEEEeCCCCC------------CC
Q 029986 17 GLRVLVVDDD-P---IWLRILEKMLRKC-LYE--VTKCNRAEIALDMLRMSKNGYDIVISDVHMPD------------MD 77 (184)
Q Consensus 17 ~~~Ilivdd~-~---~~~~~l~~~L~~~-~~~--v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~------------~~ 77 (184)
+..++++|.. . .....+..+-... +.. +..+.+.+++..+.. .+.|.|.+-.. |+ ..
T Consensus 240 gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~---aGad~i~vg~g-~gs~~~~r~~~~~g~p 315 (486)
T PRK05567 240 GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIE---AGADAVKVGIG-PGSICTTRIVAGVGVP 315 (486)
T ss_pred CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHH---cCCCEEEECCC-CCccccceeecCCCcC
Confidence 4567777753 1 1222233322232 222 345667787877765 45788765321 11 11
Q ss_pred HHHHHHHhcc---cCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 78 GFKLHEQVGL---EMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 78 g~~l~~~l~~---~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
-++.+..+.. ...+|||.=..-.+...+.+|+.+||+....
T Consensus 316 ~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 316 QITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred HHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 2334444421 2357777666777889999999999997753
No 262
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=64.89 E-value=85 Score=27.84 Aligned_cols=92 Identities=18% Similarity=0.187 Sum_probs=49.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEC-CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhc-ccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCN-RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG-LEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~-~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~-~~~~~~iI 94 (184)
+.++.++|.|+...+.+++ .|+.+..-. +-.+.++... -.+.+++++-..-++. ....+...+ ..|+.+++
T Consensus 423 g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~ag--i~~A~~vvv~~~d~~~-n~~i~~~ar~~~p~~~ii 495 (621)
T PRK03562 423 GVKMTVLDHDPDHIETLRK----FGMKVFYGDATRMDLLESAG--AAKAEVLINAIDDPQT-SLQLVELVKEHFPHLQII 495 (621)
T ss_pred CCCEEEEECCHHHHHHHHh----cCCeEEEEeCCCHHHHHhcC--CCcCCEEEEEeCCHHH-HHHHHHHHHHhCCCCeEE
Confidence 4567777777765554433 455554222 1122333222 2346777775532222 233444444 34677776
Q ss_pred EEEccCChHHHHHHHHcCCCceE
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l 117 (184)
+-+ .+........+.||+..+
T Consensus 496 aRa--~d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 496 ARA--RDVDHYIRLRQAGVEKPE 516 (621)
T ss_pred EEE--CCHHHHHHHHHCCCCEEe
Confidence 654 456777788889999653
No 263
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=64.56 E-value=52 Score=26.07 Aligned_cols=88 Identities=10% Similarity=0.138 Sum_probs=58.1
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEeC--CCC-----CCCHHHHHHHhcccCCCCEEEEEccC-ChHHHHHHHHcCCCceE
Q 029986 46 KCNRAEIALDMLRMSKNGYDIVISDV--HMP-----DMDGFKLHEQVGLEMDLPVIMMSVDG-CTQDVMKGVTHGACNYL 117 (184)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~dlvilD~--~l~-----~~~g~~l~~~l~~~~~~~iIi~~~~~-~~~~~~~a~~~ga~~~l 117 (184)
++++.+++.+... ..++|.+=+.+ ..+ ..-|++.+++++...++|++++..+. +.+...++.+.|+..+=
T Consensus 151 s~t~~eea~~f~~--~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 151 LLTSTTEAKRFAE--ETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred eeCCHHHHHHHHH--hhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence 3678888888775 34578887733 222 12378889999766789999886433 56778889999998775
Q ss_pred eCCCCHHHHHHHHHHHHc
Q 029986 118 LKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 118 ~kP~~~~~l~~~l~~~~~ 135 (184)
.--.-.......++.++.
T Consensus 229 v~T~i~~a~~~a~~~~~~ 246 (281)
T PRK06806 229 VATATFNSVITAVNNLVL 246 (281)
T ss_pred EhHHHHHHHHHHHHHHHH
Confidence 433222345555555543
No 264
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=64.07 E-value=59 Score=24.76 Aligned_cols=82 Identities=10% Similarity=0.012 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHhcCCCccEEEEeCC-CCCC--CHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeC--CCC
Q 029986 48 NRAEIALDMLRMSKNGYDIVISDVH-MPDM--DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK--PIR 122 (184)
Q Consensus 48 ~~~~~~~~~l~~~~~~~dlvilD~~-l~~~--~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k--P~~ 122 (184)
.+..+..+.+.. .--.++++|+. ...+ ..+++++++......|+.+=..-.+.+.+.+++..|++..+.- -++
T Consensus 30 ~dp~~~a~~~~~--~~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~ 107 (228)
T PRK04128 30 GDPVEIALRFSE--YVDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFD 107 (228)
T ss_pred CCHHHHHHHHHH--hCCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcC
Confidence 366666666653 21237778886 2222 4578888886667788887666677889999999999987753 333
Q ss_pred HHHHHHHHH
Q 029986 123 IKELRNIWQ 131 (184)
Q Consensus 123 ~~~l~~~l~ 131 (184)
++.+.+..+
T Consensus 108 ~~~l~~~~~ 116 (228)
T PRK04128 108 LEFLEKVTS 116 (228)
T ss_pred HHHHHHHHH
Confidence 344444433
No 265
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=63.96 E-value=56 Score=24.02 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=38.4
Q ss_pred CHHHHHHHhcccCCCCEEE-EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 77 DGFKLHEQVGLEMDLPVIM-MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 77 ~g~~l~~~l~~~~~~~iIi-~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
-+++.++.++.....|+.+ +.......++..+.+.|+++..+.....++....++.+.
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~ 101 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIK 101 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHH
Confidence 4778888887555566522 334445567778889999998877665555656665543
No 266
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=63.78 E-value=70 Score=25.07 Aligned_cols=105 Identities=16% Similarity=0.238 Sum_probs=60.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iI 94 (184)
..+++++.+.+.. +.+.+.++..+. .+.......+..+++. . .|++++-... ++-|..+++.+. ..+|+|
T Consensus 219 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~--~--ad~~v~~s~~-e~~~~~~~Ea~a--~G~PvI 290 (360)
T cd04951 219 DIKLLIAGDGPLR-ATLERLIKALGLSNRVKLLGLRDDIAAYYN--A--ADLFVLSSAW-EGFGLVVAEAMA--CELPVV 290 (360)
T ss_pred CeEEEEEcCCCcH-HHHHHHHHhcCCCCcEEEecccccHHHHHH--h--hceEEecccc-cCCChHHHHHHH--cCCCEE
Confidence 4677777765543 445555554432 3444444444455544 2 5777775443 334666777663 357887
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
+. .... ..+.+.. .+++..+.+.+++.+.+..++.
T Consensus 291 ~~-~~~~---~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 291 AT-DAGG---VREVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred Ee-cCCC---hhhEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 53 2221 2222222 5678889999999999998874
No 267
>PRK13566 anthranilate synthase; Provisional
Probab=63.08 E-value=33 Score=31.04 Aligned_cols=80 Identities=25% Similarity=0.314 Sum_probs=50.0
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCC--C-CCCHHHHHHHhcccCC
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM--P-DMDGFKLHEQVGLEMD 90 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l--~-~~~g~~l~~~l~~~~~ 90 (184)
...+++|+|||........+.++|++.|+++..+..... .+.+. ...||.||+--.- | +....++++.+. ..+
T Consensus 523 ~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~--~~~~DgVVLsgGpgsp~d~~~~~lI~~a~-~~~ 598 (720)
T PRK13566 523 VGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLD--RVNPDLVVLSPGPGRPSDFDCKATIDAAL-ARN 598 (720)
T ss_pred CCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhh--hcCCCEEEECCCCCChhhCCcHHHHHHHH-HCC
Confidence 335789999999988888999999999988876654332 12222 2348998873211 1 112234444442 246
Q ss_pred CCEEEEE
Q 029986 91 LPVIMMS 97 (184)
Q Consensus 91 ~~iIi~~ 97 (184)
.||+-+.
T Consensus 599 iPILGIC 605 (720)
T PRK13566 599 LPIFGVC 605 (720)
T ss_pred CcEEEEe
Confidence 8887664
No 268
>PLN02823 spermine synthase
Probab=62.77 E-value=33 Score=27.95 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=36.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-----CCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC-----LYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMP 74 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~-----~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~ 74 (184)
..+|.+||=|+...+..++.+... +-.+. ...|+...+ ......+|+||+|+.-|
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEKFDVIIGDLADP 187 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCCccEEEecCCCc
Confidence 457999999999999988887532 11222 344554444 43345699999997543
No 269
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=62.60 E-value=43 Score=28.70 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=40.4
Q ss_pred CCccEEEEeCCCCC-CCHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 62 NGYDIVISDVHMPD-MDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 62 ~~~dlvilD~~l~~-~~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
...|++.+|..... ..-++.++.++.. +++|+++ .+-.+.+.+..+.++||+..-
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 45899999975433 3456678888654 4777766 667778899999999998664
No 270
>PRK04148 hypothetical protein; Provisional
Probab=62.23 E-value=30 Score=24.20 Aligned_cols=58 Identities=16% Similarity=0.291 Sum_probs=37.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCH
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG 78 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g 78 (184)
+.+|+.|.-- .-..+...|.+.|++|........+.+.++ +...+++..|+.-|+.+.
T Consensus 17 ~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~--~~~~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 17 NKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAK--KLGLNAFVDDLFNPNLEI 74 (134)
T ss_pred CCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHH--HhCCeEEECcCCCCCHHH
Confidence 3567766644 222345566677888887776677777665 344678888887776653
No 271
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=62.08 E-value=36 Score=24.28 Aligned_cols=52 Identities=29% Similarity=0.136 Sum_probs=34.9
Q ss_pred CCCCeEEEEeCCHHH---------HHHHHHHHHhc-CCeEEEECCHHHHHHHHHhcCCCccEEEE
Q 029986 15 PAGLRVLVVDDDPIW---------LRILEKMLRKC-LYEVTKCNRAEIALDMLRMSKNGYDIVIS 69 (184)
Q Consensus 15 ~~~~~Ilivdd~~~~---------~~~l~~~L~~~-~~~v~~~~~~~~~~~~l~~~~~~~dlvil 69 (184)
...++|.|||.|.-. ...+.+.|... .+.+.. .+.+++.+.+. ...++.+++
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~--~g~~~~~iv 102 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLA--DGKYYMVIT 102 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhH--cCcEEEEEE
Confidence 457889999977764 56666667654 344443 47888999887 455666654
No 272
>PLN02335 anthranilate synthase
Probab=61.85 E-value=16 Score=27.68 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=34.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
+.+|+|+|...-....|...|...|+.+..+.......+.+. ...||.||+--
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~--~~~~d~iVisg 70 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELK--RKNPRGVLISP 70 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHH--hcCCCEEEEcC
Confidence 458999997666777889999988887776553211122222 23478877744
No 273
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=61.79 E-value=1.2e+02 Score=29.24 Aligned_cols=99 Identities=16% Similarity=0.214 Sum_probs=63.5
Q ss_pred CeEEEE----eCCHHHHHHHHHHHHhcCCeEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCCCC-C-HHHHHHHhccc
Q 029986 18 LRVLVV----DDDPIWLRILEKMLRKCLYEVTKCN---RAEIALDMLRMSKNGYDIVISDVHMPDM-D-GFKLHEQVGLE 88 (184)
Q Consensus 18 ~~Iliv----dd~~~~~~~l~~~L~~~~~~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~-~-g~~l~~~l~~~ 88 (184)
-+|++. |-|..=.....-+|+..||+|.... ..++.++.+. +..||+|-+...|... . -.++++.++..
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~--e~~~diVgLS~Lmt~t~~~m~~vi~~L~~~ 810 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAK--DHNADVIGLSGLITPSLDEMKEVAEEMNRR 810 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH--HhCCCEEEEcCcccccHHHHHHHHHHHHhc
Confidence 367777 6677777778888889999998655 3566777665 5669999998776543 2 24456666543
Q ss_pred -CCCCEEEEEccCChHHHHH---HHHcCCCceEe
Q 029986 89 -MDLPVIMMSVDGCTQDVMK---GVTHGACNYLL 118 (184)
Q Consensus 89 -~~~~iIi~~~~~~~~~~~~---a~~~ga~~~l~ 118 (184)
..+||++=...-+..+... ....|++.|..
T Consensus 811 g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~ 844 (1178)
T TIGR02082 811 GITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVL 844 (1178)
T ss_pred CCCceEEEeccccchhHHHhhhhhhccCCeEEec
Confidence 4566666554444444432 12338877653
No 274
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=61.52 E-value=35 Score=28.66 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=44.7
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHhcc-cCCCCEEEEEccCChHHHHHHHHcCCCce
Q 029986 46 KCNRAEIALDMLRMSKNGYDIVISDVHMPDMD-GFKLHEQVGL-EMDLPVIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~-g~~l~~~l~~-~~~~~iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
.-.+.+..++++- +.+.|+|++|..-.... -+++++++++ .|+..||. .+--+.+.+...+.+|||+.
T Consensus 248 Tre~dK~rl~ll~--~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~Via-GNVVT~~qa~nLI~aGaDgL 317 (503)
T KOG2550|consen 248 TRDDDKERLDLLV--QAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIA-GNVVTKEQAANLIAAGADGL 317 (503)
T ss_pred cccchhHHHHHhh--hcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeec-cceeeHHHHHHHHHccCcee
Confidence 3445566666665 56799999998533221 3678888864 46666652 23334577788899999976
No 275
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=61.41 E-value=56 Score=24.21 Aligned_cols=89 Identities=11% Similarity=0.051 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCeEEE--ECCHHHHHHHHHhcCCCccEEEEeCCCCC-----CCHHHHHHHhc---ccCCCCEEEEEccCC
Q 029986 32 ILEKMLRKCLYEVTK--CNRAEIALDMLRMSKNGYDIVISDVHMPD-----MDGFKLHEQVG---LEMDLPVIMMSVDGC 101 (184)
Q Consensus 32 ~l~~~L~~~~~~v~~--~~~~~~~~~~l~~~~~~~dlvilD~~l~~-----~~g~~l~~~l~---~~~~~~iIi~~~~~~ 101 (184)
.....|++.|+.+.. +......++.+. ...||.|-+|..+.. .....+++.+. ...++++|+ +.-.+
T Consensus 136 ~~~~~l~~~G~~l~ld~~g~~~~~~~~l~--~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via-~gVe~ 212 (240)
T cd01948 136 ATLRRLRALGVRIALDDFGTGYSSLSYLK--RLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVA-EGVET 212 (240)
T ss_pred HHHHHHHHCCCeEEEeCCCCcHhhHHHHH--hCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEE-EecCC
Confidence 345556677888775 445555666665 456999999964432 23344555552 223555554 44456
Q ss_pred hHHHHHHHHcCCC----ceEeCCCCH
Q 029986 102 TQDVMKGVTHGAC----NYLLKPIRI 123 (184)
Q Consensus 102 ~~~~~~a~~~ga~----~~l~kP~~~ 123 (184)
......+...|++ .|+.+|...
T Consensus 213 ~~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 213 EEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHHcCCCeeeeceeccCCCC
Confidence 7778888888884 235566543
No 276
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=61.22 E-value=14 Score=30.62 Aligned_cols=70 Identities=21% Similarity=0.373 Sum_probs=46.3
Q ss_pred ccEEEEe-CCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHH-H--HcCC-CceE-------eCCCCHHHHHHHHH
Q 029986 64 YDIVISD-VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKG-V--THGA-CNYL-------LKPIRIKELRNIWQ 131 (184)
Q Consensus 64 ~dlvilD-~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a-~--~~ga-~~~l-------~kP~~~~~l~~~l~ 131 (184)
|-++|+| .+|-+...|.|+.+--...-.|||+++++......... . -+|. -|++ ++|++.+++...++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~ 371 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIR 371 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHH
Confidence 7888885 58899999999887655567899999876543322110 0 0111 1221 78999999988877
Q ss_pred HH
Q 029986 132 HV 133 (184)
Q Consensus 132 ~~ 133 (184)
.-
T Consensus 372 iR 373 (450)
T COG1224 372 IR 373 (450)
T ss_pred Hh
Confidence 54
No 277
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=61.18 E-value=81 Score=25.00 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=43.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC--Ce---E-EEECCHHHHHHHHHhcCCCccEEEEeCCCCCCC-----HHHHHHHhc
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCL--YE---V-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD-----GFKLHEQVG 86 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~--~~---v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~-----g~~l~~~l~ 86 (184)
-++.+||=|+...+.-+++|.... .. + ....|+ .++++.....+|+||+|..-|.+- ..++.+.++
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg---~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~ 177 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG---VEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCR 177 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH---HHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHH
Confidence 379999999999998888887542 21 2 234444 455544344799999999887432 245666664
No 278
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=61.06 E-value=74 Score=26.77 Aligned_cols=99 Identities=7% Similarity=-0.001 Sum_probs=57.6
Q ss_pred EeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCH----HHHH---HHhcc-cCCCCEE
Q 029986 23 VDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG----FKLH---EQVGL-EMDLPVI 94 (184)
Q Consensus 23 vdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g----~~l~---~~l~~-~~~~~iI 94 (184)
|--|..-.+.|...|.+.||..... ....|+++++..--.... .+.+ ++++. .++.+|+
T Consensus 10 C~~N~~ds~~~~~~l~~~G~~~~~~-------------~~~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~iv 76 (437)
T PRK14331 10 CQMNFNDSEKIKGILQTLGYEPADD-------------WEEADLILVNTCTIREKPDQKVLSHLGEYKKIKEKNPNALIG 76 (437)
T ss_pred CCCcHHHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeCcceecHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 4456777788888888888876532 223799999885443322 3333 33332 3555555
Q ss_pred EEEccCChHHHHHHH-HcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 95 MMSVDGCTQDVMKGV-THGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 95 i~~~~~~~~~~~~a~-~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
+........ -...+ .....|++..+-....+...+..+..
T Consensus 77 v~Gc~a~~~-~e~~~~~~p~vD~vv~~~~~~~i~~l~~~~~~ 117 (437)
T PRK14331 77 VCGCLAQRA-GYEIVQKAPFIDIVFGTFNIHHLPELLEQAKA 117 (437)
T ss_pred EEcchhcCC-hHHHHhcCCCCcEEECCCCHHHHHHHHHHHhc
Confidence 544322211 11222 23345688888888888887777654
No 279
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=60.80 E-value=1.3e+02 Score=27.08 Aligned_cols=100 Identities=13% Similarity=0.044 Sum_probs=66.5
Q ss_pred HHHHHHHHhcCCeEEE--ECCHHHHHHHHHhcCCCccEEEEeCCCCC-----CCHHHHHHHhc---ccCCCCEEEEEccC
Q 029986 31 RILEKMLRKCLYEVTK--CNRAEIALDMLRMSKNGYDIVISDVHMPD-----MDGFKLHEQVG---LEMDLPVIMMSVDG 100 (184)
Q Consensus 31 ~~l~~~L~~~~~~v~~--~~~~~~~~~~l~~~~~~~dlvilD~~l~~-----~~g~~l~~~l~---~~~~~~iIi~~~~~ 100 (184)
......|++.|+.+.. +.++-..+..+. .-.||.|=+|-.+-. .....+++.+. ...++.+|+- .=.
T Consensus 681 ~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~--~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~via~-gVe 757 (799)
T PRK11359 681 FKRIQILRDMGVGLSVDDFGTGFSGLSRLV--SLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAE-GVE 757 (799)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHh--hCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEEEE-cCC
Confidence 3344567788988764 566667777766 456999999875421 22344555552 2345565554 445
Q ss_pred ChHHHHHHHHcCCC----ceEeCCCCHHHHHHHHHHH
Q 029986 101 CTQDVMKGVTHGAC----NYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 101 ~~~~~~~a~~~ga~----~~l~kP~~~~~l~~~l~~~ 133 (184)
+.+....+.+.|++ .|+.||...++|...++..
T Consensus 758 ~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~ 794 (799)
T PRK11359 758 TKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSV 794 (799)
T ss_pred CHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhc
Confidence 57777788899996 3578999999998876654
No 280
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=60.63 E-value=44 Score=28.67 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 51 EIALDMLRMSKNGYDIVISDVHMPD-MDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 51 ~~~~~~l~~~~~~~dlvilD~~l~~-~~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
.+....+. ..+.|+|.+|..... ..-.++++++++. |+++|| ..+-.+.+.+..+.++||+..-
T Consensus 229 ~~~a~~Lv--~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~-agnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 229 AAKARALL--EAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIV-AGNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred HHHHHHHH--HhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEE-eeccCCHHHHHHHHHcCCCEEE
Confidence 34444443 356899999986543 3456788888644 455444 3366678899999999999653
No 281
>CHL00101 trpG anthranilate synthase component 2
Probab=60.25 E-value=17 Score=26.67 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=34.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEe
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD 70 (184)
|+|+|........|.+.|+..|..+............+. ...||.||+-
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiiis 50 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIK--NLNIRHIIIS 50 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHh--hCCCCEEEEC
Confidence 899999999999999999998888776664332222222 2348888864
No 282
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=60.08 E-value=1.2e+02 Score=26.71 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=63.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iI 94 (184)
..+++|+.+.+. .+.+....++.+. .|.......+...++. . .|+.++-.. .++-|..+++.+. ..+|||
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~La--a--ADVfVlPS~-~EGfp~vlLEAMA--~GlPVV 500 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWLQ--K--MNVFILFSR-YEGLPNVLIEAQM--VGVPVI 500 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHHH--h--CCEEEEccc-ccCccHHHHHHHH--hCCCEE
Confidence 467778877653 4556666666553 3544444444445444 2 588877442 3455667777763 468888
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHH
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIW 130 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l 130 (184)
..... ...+.+..|..+|+..|.+...+.+.+
T Consensus 501 ATdvG----G~~EiV~dG~nG~LVp~~D~~aLa~ai 532 (578)
T PRK15490 501 STPAG----GSAECFIEGVSGFILDDAQTVNLDQAC 532 (578)
T ss_pred EeCCC----CcHHHcccCCcEEEECCCChhhHHHHH
Confidence 54332 234556689999999998877766554
No 283
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=59.87 E-value=52 Score=24.15 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=31.6
Q ss_pred ccEEEEeCCCCCCCH-------HHHHHHhccc-----CCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 64 YDIVISDVHMPDMDG-------FKLHEQVGLE-----MDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 64 ~dlvilD~~l~~~~g-------~~l~~~l~~~-----~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
+|.+.++...++..| ++.++++++. ++.|+.+. ..-+.+.+..+.+.|++.++.-
T Consensus 127 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~-GGI~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 127 VDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVD-GGVNDDNARELAEAGADILVAG 193 (210)
T ss_pred CCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEE-CCcCHHHHHHHHHcCCCEEEEC
Confidence 677777654443333 3344444321 23565444 3445777888899999988643
No 284
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=59.63 E-value=78 Score=24.31 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCCcc-EEEEeCCC---CCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHc-CCCceEe------C
Q 029986 51 EIALDMLRMSKNGYD-IVISDVHM---PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTH-GACNYLL------K 119 (184)
Q Consensus 51 ~~~~~~l~~~~~~~d-lvilD~~l---~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~-ga~~~l~------k 119 (184)
.+..+.+. +.+++ +++.++.- ..+-.+++++.+....+.|+|.-..-.+.+...++++. |+++.+. .
T Consensus 156 ~~~~~~~~--~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 156 VEWAKEVE--ELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HHHHHHHH--HcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 34444443 34565 45544431 12223677788865567899988877888888888875 9988775 3
Q ss_pred CCCHHHHHHHHH
Q 029986 120 PIRIKELRNIWQ 131 (184)
Q Consensus 120 P~~~~~l~~~l~ 131 (184)
-++.+++.+.+.
T Consensus 234 ~~~~~~~~~~~~ 245 (253)
T PRK02083 234 EITIGELKAYLA 245 (253)
T ss_pred CCCHHHHHHHHH
Confidence 556666655543
No 285
>PRK05670 anthranilate synthase component II; Provisional
Probab=59.54 E-value=18 Score=26.50 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=33.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEE
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvil 69 (184)
|+|+|-.......+.+.|.+.|+.+............+. ...||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIE--ALNPDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHH--hCCCCEEEE
Confidence 899999999999999999998887766544321122222 233888887
No 286
>PRK10060 RNase II stability modulator; Provisional
Probab=59.44 E-value=1.3e+02 Score=26.79 Aligned_cols=103 Identities=12% Similarity=0.054 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhcCCeEEE--ECCHHHHHHHHHhcCCCccEEEEeCCCC-----CCCHHHHHHHh---cccCCCCEEEEE
Q 029986 28 IWLRILEKMLRKCLYEVTK--CNRAEIALDMLRMSKNGYDIVISDVHMP-----DMDGFKLHEQV---GLEMDLPVIMMS 97 (184)
Q Consensus 28 ~~~~~l~~~L~~~~~~v~~--~~~~~~~~~~l~~~~~~~dlvilD~~l~-----~~~g~~l~~~l---~~~~~~~iIi~~ 97 (184)
.....+...|++.|+.+.. +.++-..+..+. .-++|.|=+|-.+- +.....+++.+ .+..++.+|+=.
T Consensus 541 ~~~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~--~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeG 618 (663)
T PRK10060 541 ELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLA--RFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEG 618 (663)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhHHHHH--hCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEec
Confidence 3444455677888988764 667777788877 56699999986332 23345556555 223456666543
Q ss_pred ccCChHHHHHHHHcCCC----ceEeCCCCHHHHHHHHHHH
Q 029986 98 VDGCTQDVMKGVTHGAC----NYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~----~~l~kP~~~~~l~~~l~~~ 133 (184)
=.+.+....+.+.|++ .|+.||....++...+..-
T Consensus 619 -VEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~~ 657 (663)
T PRK10060 619 -VETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRY 657 (663)
T ss_pred -CCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHhh
Confidence 3456666677788885 3478999999998877653
No 287
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=59.41 E-value=84 Score=26.56 Aligned_cols=100 Identities=10% Similarity=0.073 Sum_probs=59.6
Q ss_pred EEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC----CHHHHHHHh---cc-cCCCCE
Q 029986 22 VVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM----DGFKLHEQV---GL-EMDLPV 93 (184)
Q Consensus 22 ivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~----~g~~l~~~l---~~-~~~~~i 93 (184)
=|--|..-.+.|...|.+.||++... ....|++|++..-=.. ..++.+.++ +. .++.+|
T Consensus 15 GC~~N~~ds~~~~~~l~~~G~~~~~~-------------~~~ADiiiiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~v 81 (448)
T PRK14333 15 GCQMNKADSERMAGILEDMGYQWAED-------------ELQADLVLYNTCTIRDNAEQKVYSYLGRQAKRKHKNPDLTL 81 (448)
T ss_pred CCCCcHHHHHHHHHHHHHCcCEECCC-------------cccCCEEEEEeeeeeehHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 35577888889999999989887632 2237999998743222 223333333 22 245555
Q ss_pred EEEEccCChHHHHHHHH-cCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 94 IMMSVDGCTQDVMKGVT-HGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~-~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
++...... ..-...++ ....|++..+-....+...+..+..
T Consensus 82 vv~Gc~a~-~~~~~~~~~~p~vD~v~g~~~~~~~~~ll~~~~~ 123 (448)
T PRK14333 82 VVAGCVAQ-QEGESLLRRVPELDLVMGPQHANRLEDLLEQVDA 123 (448)
T ss_pred EEECccCc-cCHHHHHhcCCCCCEEECCCCHHHHHHHHHHHhc
Confidence 55443322 22333342 3344678888888888888877654
No 288
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=59.23 E-value=26 Score=25.23 Aligned_cols=58 Identities=29% Similarity=0.349 Sum_probs=39.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~ 76 (184)
.+.+|+|+......-.-|..+|.+.+..|..++.....++..- ...|+|+.-..-|+.
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~---~~ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEIT---RRADIVVSAVGKPNL 92 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHH---TTSSEEEE-SSSTT-
T ss_pred CCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccccee---eeccEEeeeeccccc
Confidence 5779999999999999999999999999988765443333222 237999998765553
No 289
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=58.92 E-value=89 Score=24.74 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=64.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
.+++|+.+.+... .+...+ .......-.-+.++..+++. . .|++++-.. +.-|...++.+. ..+|||...
T Consensus 222 ~~l~ivG~g~~~~-~l~~~~-~~~V~~~g~~~~~~~~~~~~--~--ad~~v~ps~--e~~g~~~~Eama--~G~Pvi~~~ 291 (351)
T cd03804 222 KRLVVIGDGPELD-RLRAKA-GPNVTFLGRVSDEELRDLYA--R--ARAFLFPAE--EDFGIVPVEAMA--SGTPVIAYG 291 (351)
T ss_pred CcEEEEECChhHH-HHHhhc-CCCEEEecCCCHHHHHHHHH--h--CCEEEECCc--CCCCchHHHHHH--cCCCEEEeC
Confidence 5677887766432 333311 11222222334555666665 2 578887654 444555666653 467888753
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
... ..+.+..|..+++..|-+.+++.+.+..+++..
T Consensus 292 ~~~----~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 292 KGG----ALETVIDGVTGILFEEQTVESLAAAVERFEKNE 327 (351)
T ss_pred CCC----CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCc
Confidence 322 233455677899999999999999999887644
No 290
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=58.80 E-value=88 Score=26.28 Aligned_cols=99 Identities=9% Similarity=0.103 Sum_probs=59.7
Q ss_pred EeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCC----CCCCCHHHHHHHh---cccCCCCEEE
Q 029986 23 VDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH----MPDMDGFKLHEQV---GLEMDLPVIM 95 (184)
Q Consensus 23 vdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~----l~~~~g~~l~~~l---~~~~~~~iIi 95 (184)
|--|..-.+.|...|...|++.... ...+|+|++... ......++.++++ +..+..+|++
T Consensus 10 C~~N~~ds~~~~~~l~~~g~~~~~~-------------~~~aDlvvinTC~v~~~a~~~~~~~i~~~~~~~r~~~~~vvv 76 (434)
T PRK14330 10 CQMNENDSETMAGLLKKEGFEPASN-------------PEEADVVIINTCAVRRKSEEKAYSELGQLLKLKRKKNLIIGV 76 (434)
T ss_pred CCCcHHHHHHHHHHHHHCcCEECCC-------------cccCCEEEEEccceeehHHHHHHHHHHHHHHhcccCCCEEEE
Confidence 4456777788888898888876532 234799999742 1222345566666 1224455555
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
..... ...-.++.+. ..+++.-+-....+.+.+..+..+
T Consensus 77 ~Gc~a-~~~~ee~~~~-~~d~vvg~~~~~~~~~~l~~~~~~ 115 (434)
T PRK14330 77 AGCVA-EKEREKLLKR-GADFVIGTRAVPKVTEAVKRALNG 115 (434)
T ss_pred ECccc-cCchhhHHhc-CCcEEEcCCCHHHHHHHHHHHhcC
Confidence 43322 2222344455 566888888888888888776543
No 291
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=58.70 E-value=66 Score=25.72 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=52.3
Q ss_pred CCCeEEEEeCCHHHH-HHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC--CCCCC-----CHHHHHHHhcc
Q 029986 16 AGLRVLVVDDDPIWL-RILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV--HMPDM-----DGFKLHEQVGL 87 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~-~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~--~l~~~-----~g~~l~~~l~~ 87 (184)
...+|+++|..|... ..+...|.+.|..+....+..-+.-+ . + .|.||+.. .+.++ -|--.+..+.+
T Consensus 140 ~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Dsa~~~~m-~--~--vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak 214 (301)
T TIGR00511 140 KDIEVIATETRPRKQGHITAKELRDYGIPVTLIVDSAVRYFM-K--E--VDHVVVGADAITANGALINKIGTSQLALAAR 214 (301)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehhHHHHHH-H--h--CCEEEECccEEecCCCEEEHHhHHHHHHHHH
Confidence 457899999888654 34567788889988888765444433 2 2 78888744 33433 35445555555
Q ss_pred cCCCCEEEEEcc
Q 029986 88 EMDLPVIMMSVD 99 (184)
Q Consensus 88 ~~~~~iIi~~~~ 99 (184)
..++|+++++..
T Consensus 215 ~~~vPv~V~a~~ 226 (301)
T TIGR00511 215 EARVPFMVAAET 226 (301)
T ss_pred HhCCCEEEEccc
Confidence 678999998653
No 292
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=58.66 E-value=80 Score=24.10 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=64.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPV 93 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~i 93 (184)
+.+++.++.+.+.. ..+.......+. .+......++..+.+. . .|+++.-... ++-|..+++.+. ..+|+
T Consensus 208 ~~~~l~i~G~~~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~--~--ad~~i~ps~~-e~~~~~~~Ea~a--~G~Pv 279 (348)
T cd03820 208 PDWKLRIVGDGPER-EALEALIKELGLEDRVILLGFTKNIEEYYA--K--ASIFVLTSRF-EGFPMVLLEAMA--FGLPV 279 (348)
T ss_pred CCeEEEEEeCCCCH-HHHHHHHHHcCCCCeEEEcCCcchHHHHHH--h--CCEEEeCccc-cccCHHHHHHHH--cCCCE
Confidence 35567777654432 334444444432 3433333345555554 2 5888876554 334566666663 46788
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
|...... ........|..+++.++.+.+++.+.+..++.
T Consensus 280 i~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 280 ISFDCPT---GPSEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred EEecCCC---chHhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 7542222 22334556668899999999999999998865
No 293
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=58.55 E-value=87 Score=24.46 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=49.7
Q ss_pred CeEEEEeCCHHHH-HHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC--CCCCC-----CHHHHHHHhcccC
Q 029986 18 LRVLVVDDDPIWL-RILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV--HMPDM-----DGFKLHEQVGLEM 89 (184)
Q Consensus 18 ~~Ilivdd~~~~~-~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~--~l~~~-----~g~~l~~~l~~~~ 89 (184)
.+|+++|..|... ..+...|.+.|..+....+..-+.-+ . ..|.||+.. .+.++ -|-..+..+.+..
T Consensus 110 ~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Dsa~~~~m-~----~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~ 184 (253)
T PRK06372 110 KSVYILESRPMLEGIDMAKLLVKSGIDVVLLTDASMCEAV-L----NVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYL 184 (253)
T ss_pred CEEEEecCCCchHHHHHHHHHHHCCCCEEEEehhHHHHHH-H----hCCEEEECccEEecCCCEeehhhHHHHHHHHHHc
Confidence 4899999888643 45677787889888877665433322 2 278888744 33333 3555555555567
Q ss_pred CCCEEEEEc
Q 029986 90 DLPVIMMSV 98 (184)
Q Consensus 90 ~~~iIi~~~ 98 (184)
++|+++++.
T Consensus 185 ~vPv~V~~~ 193 (253)
T PRK06372 185 KKPFYSLTI 193 (253)
T ss_pred CCCEEEEee
Confidence 899998764
No 294
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=58.52 E-value=1e+02 Score=25.31 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=39.8
Q ss_pred CeEEEEeCCHH-----HHHHHHHHHHhcCCeEEEEC---------CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHH
Q 029986 18 LRVLVVDDDPI-----WLRILEKMLRKCLYEVTKCN---------RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHE 83 (184)
Q Consensus 18 ~~Ilivdd~~~-----~~~~l~~~L~~~~~~v~~~~---------~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~ 83 (184)
-|++||-|... ..+.+...|+..|.++..+. +..++.+.++ +..+|.||- +.+++-++..+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~--~~~~D~Iia---vGGGS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAR--EEGCDFVVG---LGGGSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHH--HcCCCEEEE---eCCccHHHHHH
Confidence 47888887654 33567777877776665543 3445555555 456898874 34667677666
Q ss_pred Hh
Q 029986 84 QV 85 (184)
Q Consensus 84 ~l 85 (184)
.+
T Consensus 101 ~i 102 (380)
T cd08185 101 AI 102 (380)
T ss_pred HH
Confidence 54
No 295
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=58.49 E-value=30 Score=27.76 Aligned_cols=70 Identities=21% Similarity=0.316 Sum_probs=49.6
Q ss_pred CeEEEECCHHHHHHHHH-hcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCc
Q 029986 42 YEVTKCNRAEIALDMLR-MSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACN 115 (184)
Q Consensus 42 ~~v~~~~~~~~~~~~l~-~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~ 115 (184)
|++- ..+..+++.... ..+.+.|++++- |.+.-+++++.++...++|+..+-...+-..++.|.+.|..|
T Consensus 212 YQmd-pan~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~id 282 (314)
T cd00384 212 YQMD-PANRREALREVELDIEEGADILMVK---PALAYLDIIRDVRERFDLPVAAYNVSGEYAMIKAAAKNGWID 282 (314)
T ss_pred cCCC-CCCHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCcc
Confidence 4443 335566665553 235678999885 566778889999877789999998777777777777777654
No 296
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=58.46 E-value=3.2 Score=34.25 Aligned_cols=71 Identities=23% Similarity=0.371 Sum_probs=40.1
Q ss_pred ccEEEEe-CCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHH-H--HcCC-CceE-------eCCCCHHHHHHHHH
Q 029986 64 YDIVISD-VHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKG-V--THGA-CNYL-------LKPIRIKELRNIWQ 131 (184)
Q Consensus 64 ~dlvilD-~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a-~--~~ga-~~~l-------~kP~~~~~l~~~l~ 131 (184)
|-++|+| .+|-+...|.++.+.-..+-.|+|+++++......... . -+|. .||| ++|++.+++.+.+.
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~ 358 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILK 358 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHH
Confidence 6788885 58899999999998866778899999876433211100 0 0111 1232 78999999998877
Q ss_pred HHH
Q 029986 132 HVA 134 (184)
Q Consensus 132 ~~~ 134 (184)
.-.
T Consensus 359 iR~ 361 (398)
T PF06068_consen 359 IRA 361 (398)
T ss_dssp HHH
T ss_pred hhh
Confidence 543
No 297
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=58.34 E-value=1e+02 Score=25.27 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=40.8
Q ss_pred CeEEEEeCCHHHH-----HHHHHHHHhcCCeEEEECC---------HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHH
Q 029986 18 LRVLVVDDDPIWL-----RILEKMLRKCLYEVTKCNR---------AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHE 83 (184)
Q Consensus 18 ~~Ilivdd~~~~~-----~~l~~~L~~~~~~v~~~~~---------~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~ 83 (184)
-|++|+-|..... +.+...|+..|+.+..+.. .+++.+.++ +..+|.||- +.+++-++..+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~--~~~~D~IIa---vGGGSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMR--EFEPDWIIA---LGGGSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHH--hcCCCEEEE---eCCccHHHHHH
Confidence 4788888765443 5677888877776665532 445555555 456898874 45667666666
Q ss_pred Hh
Q 029986 84 QV 85 (184)
Q Consensus 84 ~l 85 (184)
.+
T Consensus 99 ~i 100 (375)
T cd08179 99 AM 100 (375)
T ss_pred HH
Confidence 54
No 298
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=58.14 E-value=1e+02 Score=25.29 Aligned_cols=88 Identities=13% Similarity=0.084 Sum_probs=52.0
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHhcccCCCCEEEEEc-cCChHHHHHHHHcCCCceEeCCCCH
Q 029986 46 KCNRAEIALDMLRMSKNGYDIVISDVHMPD-MDGFKLHEQVGLEMDLPVIMMSV-DGCTQDVMKGVTHGACNYLLKPIRI 123 (184)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-~~g~~l~~~l~~~~~~~iIi~~~-~~~~~~~~~a~~~ga~~~l~kP~~~ 123 (184)
...+.++........ ...+.++++..-.. .---.++..+.. ....++.... ..+...+...++.|+++.+.+|-+.
T Consensus 80 ~i~~~~~~~~a~~~~-~~~~~~iv~~~Dw~iIPlEnliA~~~~-~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~ 157 (354)
T PF01959_consen 80 EITDKEDEEEACELA-KRADYVIVEFRDWTIIPLENLIAALQG-SSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDP 157 (354)
T ss_pred EECCHHHHHHHHHHh-ccCCeEEEEcCCCcEecHHHHHHHhcC-CCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCH
Confidence 344444443333322 22456666543222 222334555532 3455555543 3334567789999999999999999
Q ss_pred HHHHHHHHHHHc
Q 029986 124 KELRNIWQHVAQ 135 (184)
Q Consensus 124 ~~l~~~l~~~~~ 135 (184)
.++......+..
T Consensus 158 ~ei~~~~~~~~~ 169 (354)
T PF01959_consen 158 AEIKALVALLKE 169 (354)
T ss_pred HHHHHHHHHHhh
Confidence 999988887655
No 299
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=58.13 E-value=44 Score=24.75 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=35.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvil 69 (184)
|+|+|+|-..-....+...|+..|+++....+.. .+ ..+|.+++
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~----~~----~~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPE----EI----LDADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHH----HH----ccCCEEEE
Confidence 5899999988888999999999999888776532 12 23899888
No 300
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=58.06 E-value=60 Score=23.59 Aligned_cols=58 Identities=9% Similarity=0.035 Sum_probs=40.9
Q ss_pred CHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 77 DGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 77 ~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
+-.+.++.+++. +..+-|.+ .-.+.+.+.+++++|++...+--.+++++.+++..+..
T Consensus 65 ~i~~av~~~~~~~~~~~~I~V-Ev~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~ 123 (169)
T PF01729_consen 65 GIEEAVKAARQAAPEKKKIEV-EVENLEEAEEALEAGADIIMLDNMSPEDLKEAVEELRE 123 (169)
T ss_dssp SHHHHHHHHHHHSTTTSEEEE-EESSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhh
Confidence 345566667543 44543333 44568889999999999999999999999999997643
No 301
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=57.96 E-value=33 Score=27.58 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=49.7
Q ss_pred CeEEEECCHHHHHHHHH-hcCCCccEEEEeCCCCCCCHHHHHHHhcccC-CCCEEEEEccCChHHHHHHHHcCCCc
Q 029986 42 YEVTKCNRAEIALDMLR-MSKNGYDIVISDVHMPDMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACN 115 (184)
Q Consensus 42 ~~v~~~~~~~~~~~~l~-~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~-~~~iIi~~~~~~~~~~~~a~~~ga~~ 115 (184)
|++- ..+..+++.... ..+.+.|++++- |.+.-+++++.++... ++|+..+-...+-..++.|.+.|..|
T Consensus 217 YQmd-p~n~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~~~~PvaaYqVSGEYaMikaAa~~G~iD 288 (320)
T cd04824 217 YQLP-PGARGLALRAVERDVSEGADMIMVK---PGTPYLDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAGAFD 288 (320)
T ss_pred cCCC-CcCHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHHhccCCCEEEEEccHHHHHHHHHHHcCCCc
Confidence 4443 335566665543 235678999885 5667788899997654 99999998777777788888877765
No 302
>PLN02929 NADH kinase
Probab=57.80 E-value=98 Score=24.85 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhc-ccCCCCEEEEEccC----
Q 029986 26 DPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG-LEMDLPVIMMSVDG---- 100 (184)
Q Consensus 26 ~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~-~~~~~~iIi~~~~~---- 100 (184)
+....+.+...|+..|+++..... .+. ......+|+||+ -++|| .+++..+ ....+||+-+-...
T Consensus 32 h~~~~~~~~~~L~~~gi~~~~v~r-~~~----~~~~~~~Dlvi~----lGGDG-T~L~aa~~~~~~iPvlGIN~Gp~~~~ 101 (301)
T PLN02929 32 HKDTVNFCKDILQQKSVDWECVLR-NEL----SQPIRDVDLVVA----VGGDG-TLLQASHFLDDSIPVLGVNSDPTQKD 101 (301)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeec-ccc----ccccCCCCEEEE----ECCcH-HHHHHHHHcCCCCcEEEEECCCcccc
Confidence 445666778888888888754432 211 111234788887 36777 3334332 23468888775421
Q ss_pred ChHHHHHHHH-cCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 101 CTQDVMKGVT-HGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 101 ~~~~~~~a~~-~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
+.+.....++ .|-.+|+. .+..+++.+.+..++++....
T Consensus 102 ~~~~~~~~~~~~r~lGfL~-~~~~~~~~~~L~~il~g~~~~ 141 (301)
T PLN02929 102 EVEEYSDEFDARRSTGHLC-AATAEDFEQVLDDVLFGRLKP 141 (301)
T ss_pred cccccccccccccCccccc-cCCHHHHHHHHHHHHcCCceE
Confidence 1111112222 24467887 456789999999999876443
No 303
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=57.74 E-value=88 Score=24.31 Aligned_cols=101 Identities=14% Similarity=0.050 Sum_probs=54.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEE-EEC--CHHHHHHHHHhcCCCccEEEEeCC-CCCC------CHHHHHHHhcccC
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVT-KCN--RAEIALDMLRMSKNGYDIVISDVH-MPDM------DGFKLHEQVGLEM 89 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~--~~~~~~~~l~~~~~~~dlvilD~~-l~~~------~g~~l~~~l~~~~ 89 (184)
+++.|-.......+...+++.|.... .++ +..+-+..+.....++..++ -.. -.+. +-.+.++++++..
T Consensus 119 viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~v-s~~G~TG~~~~~~~~~~~~i~~lr~~~ 197 (256)
T TIGR00262 119 VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLV-SRAGVTGARNRAASALNELVKRLKAYS 197 (256)
T ss_pred EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEE-ECCCCCCCcccCChhHHHHHHHHHhhc
Confidence 44555555555666667777775532 222 22233333332222233333 321 1111 2355667776555
Q ss_pred CCCEEEEEccCChHHHHHHHHcCCCceEeCCC
Q 029986 90 DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121 (184)
Q Consensus 90 ~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~ 121 (184)
+.||++=..-.+.+.+..+.+.||++++.-..
T Consensus 198 ~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 198 AKPVLVGFGISKPEQVKQAIDAGADGVIVGSA 229 (256)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 67766533444588999999999999987543
No 304
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=57.62 E-value=97 Score=24.73 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=44.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 64 ~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
.|++++-.. .++-|..+++.+. ..+|+|....... ..+.+..|..+++..|-+.+++.+++..++..
T Consensus 279 ad~~v~~S~-~Eg~~~~~lEAma--~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 279 AQLSLLTSQ-SEGFGLSLMEALS--HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred hhEEEeccc-ccccChHHHHHHh--CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 466555333 3344555666653 4678886532211 23445678899999999999999999998764
No 305
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=57.57 E-value=83 Score=23.93 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=39.7
Q ss_pred CCCccEEEE-eCCC---CCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHc-CCCceEe
Q 029986 61 KNGYDIVIS-DVHM---PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTH-GACNYLL 118 (184)
Q Consensus 61 ~~~~dlvil-D~~l---~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~-ga~~~l~ 118 (184)
+.+.|.+++ +..- ..+-.+++++.+....++|++....-.+.+.+.++++. |+++.+.
T Consensus 160 ~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 160 ELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 455775554 4321 11223677888866568999988877788889888887 8987764
No 306
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=57.53 E-value=93 Score=24.48 Aligned_cols=70 Identities=17% Similarity=0.104 Sum_probs=47.1
Q ss_pred EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 44 VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 44 v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
...+++.+++.+... .++|.|.+|-..|. +--++.+.++.. +++|++... .-+.+.+.+..+.|++.+..
T Consensus 187 gVev~t~eea~~A~~---~gaD~I~ld~~~p~-~l~~~~~~~~~~~~~i~i~AsG-GI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 187 VVEVDSLEEALAAAE---AGADILQLDKFSPE-ELAELVPKLRSLAPPVLLAAAG-GINIENAAAYAAAGADILVT 257 (272)
T ss_pred EEEcCCHHHHHHHHH---cCCCEEEECCCCHH-HHHHHHHHHhccCCCceEEEEC-CCCHHHHHHHHHcCCcEEEE
Confidence 457888888888764 56899999965443 222344444433 467766554 45678888999999998754
No 307
>PRK12704 phosphodiesterase; Provisional
Probab=57.52 E-value=17 Score=31.43 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=35.4
Q ss_pred CCC-EEEEEccCChH--HHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 90 DLP-VIMMSVDGCTQ--DVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 90 ~~~-iIi~~~~~~~~--~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
++| +|++|+..... .+..+++.|+.|+..||+..+++...++.-+
T Consensus 248 dtp~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~ 295 (520)
T PRK12704 248 DTPEAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEV 295 (520)
T ss_pred CCCCeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHH
Confidence 344 77777765554 7888999999999999999999977776544
No 308
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=57.17 E-value=56 Score=23.94 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=33.3
Q ss_pred ccEEEEeCCCCCCCH-------HHHHHHhccc-----CCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 64 YDIVISDVHMPDMDG-------FKLHEQVGLE-----MDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 64 ~dlvilD~~l~~~~g-------~~l~~~l~~~-----~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+|.+.++...++.+| .+.++++++. ++.|+++.. .-+.+.+..+.+.|++.++.
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~G-GI~~env~~~~~~gad~iiv 193 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDG-GINLETIPLLAEAGADVLVA 193 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEEC-CCCHHHHHHHHHcCCCEEEE
Confidence 688777765555433 3334444321 246776554 44567788899999998875
No 309
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=57.00 E-value=64 Score=25.35 Aligned_cols=76 Identities=13% Similarity=0.037 Sum_probs=42.5
Q ss_pred CeEEEEeCC------HHHHHHHHHHHHhcCCeEEEECCHH-HHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCC
Q 029986 18 LRVLVVDDD------PIWLRILEKMLRKCLYEVTKCNRAE-IALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMD 90 (184)
Q Consensus 18 ~~Ilivdd~------~~~~~~l~~~L~~~~~~v~~~~~~~-~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~ 90 (184)
|||+++... ......+...|.+.|+++..+.... .....+. ...||+|.+-......-....+..+. .+
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~--~~~~diih~~~~~~~~~~~~~~~~~~--~~ 76 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIE--IINADIVHLHWIHGGFLSIEDLSKLL--DR 76 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChh--cccCCEEEEEccccCccCHHHHHHHH--cC
Confidence 467777544 3466778888888888766444322 3333333 45699998854333322233333331 35
Q ss_pred CCEEEEE
Q 029986 91 LPVIMMS 97 (184)
Q Consensus 91 ~~iIi~~ 97 (184)
+|+|+..
T Consensus 77 ~~~v~~~ 83 (365)
T cd03825 77 KPVVWTL 83 (365)
T ss_pred CCEEEEc
Confidence 6766653
No 310
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=56.96 E-value=53 Score=24.03 Aligned_cols=21 Identities=5% Similarity=-0.116 Sum_probs=10.4
Q ss_pred HHHcCCCceE--eCCCCHHHHHH
Q 029986 108 GVTHGACNYL--LKPIRIKELRN 128 (184)
Q Consensus 108 a~~~ga~~~l--~kP~~~~~l~~ 128 (184)
+.+.|..-.+ +.|.+..+...
T Consensus 99 ~~~~g~~~~v~~~~~~t~~e~~~ 121 (202)
T cd04726 99 AKKYGKEVQVDLIGVEDPEKRAK 121 (202)
T ss_pred HHHcCCeEEEEEeCCCCHHHHHH
Confidence 3344554333 45666555543
No 311
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=56.95 E-value=87 Score=23.99 Aligned_cols=108 Identities=20% Similarity=0.222 Sum_probs=60.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC--CeEEE--ECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCL--YEVTK--CNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLP 92 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~--~~v~~--~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~ 92 (184)
.+++.++.+.. ....+....+..+ ..+.. .-+.++..+.+. . .|++++-... +.-|..+.+.+. .++|
T Consensus 230 ~~~l~i~G~~~-~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~--~di~i~~~~~-~~~~~~~~Ea~~--~g~p 301 (374)
T cd03801 230 DVRLVIVGDGP-LREELEALAAELGLGDRVTFLGFVPDEDLPALYA--A--ADVFVLPSLY-EGFGLVLLEAMA--AGLP 301 (374)
T ss_pred CeEEEEEeCcH-HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHH--h--cCEEEecchh-ccccchHHHHHH--cCCc
Confidence 35566666433 3334444433221 12222 223355555554 2 5777765443 344555666553 3678
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+|..... ...+.+..|-.+++..+.+.+++.+.+..++..
T Consensus 302 vI~~~~~----~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 341 (374)
T cd03801 302 VVASDVG----GIPEVVEDGETGLLVPPGDPEALAEAILRLLDD 341 (374)
T ss_pred EEEeCCC----ChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 7754322 233445557788999999999999999988654
No 312
>PRK05637 anthranilate synthase component II; Provisional
Probab=56.73 E-value=31 Score=25.88 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=35.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEe
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD 70 (184)
.+|+++|...-....+..+|+..|+.+..+..... .+.+. ...||.||+-
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~--~~~~~~iIls 51 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEIL--AANPDLICLS 51 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHH--hcCCCEEEEe
Confidence 37999999888888899999998887766654322 23332 2348888883
No 313
>PRK04457 spermidine synthase; Provisional
Probab=56.43 E-value=93 Score=24.18 Aligned_cols=53 Identities=9% Similarity=0.095 Sum_probs=36.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC--CeEE-EECCHHHHHHHHHhcCCCccEEEEeCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCL--YEVT-KCNRAEIALDMLRMSKNGYDIVISDVH 72 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~--~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~ 72 (184)
..+|..+|-++...+..++.+...+ -.+. ...++.+.+.. ....+|+|++|..
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~---~~~~yD~I~~D~~ 145 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV---HRHSTDVILVDGF 145 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh---CCCCCCEEEEeCC
Confidence 5689999999999988888775322 2232 34566655543 2356999999963
No 314
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=56.15 E-value=60 Score=25.99 Aligned_cols=81 Identities=20% Similarity=0.135 Sum_probs=53.5
Q ss_pred CCCeEEEEeCCHHHH--HHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC--CCCCC-----CHHHHHHHhc
Q 029986 16 AGLRVLVVDDDPIWL--RILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV--HMPDM-----DGFKLHEQVG 86 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~--~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~--~l~~~-----~g~~l~~~l~ 86 (184)
...+|+++|..|... ..+...|.+.|..+....+..-+.-+ . ....|.||+.. .+.++ -|--.+..+.
T Consensus 151 ~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m-~--~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~A 227 (303)
T TIGR00524 151 KRIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFM-Q--KGEIDAVIVGADRIARNGDVANKIGTYQLAVLA 227 (303)
T ss_pred CceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHc-c--ccCCCEEEEcccEEecCCCEeEhhhHHHHHHHH
Confidence 457899998888653 34577888889998888765444333 2 23588998844 34433 3544555555
Q ss_pred ccCCCCEEEEEcc
Q 029986 87 LEMDLPVIMMSVD 99 (184)
Q Consensus 87 ~~~~~~iIi~~~~ 99 (184)
+..++|+++++..
T Consensus 228 k~~~vPv~V~a~s 240 (303)
T TIGR00524 228 KEFRIPFFVAAPL 240 (303)
T ss_pred HHhCCCEEEeccc
Confidence 5678999988653
No 315
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=55.97 E-value=52 Score=23.32 Aligned_cols=57 Identities=19% Similarity=0.037 Sum_probs=38.3
Q ss_pred CCccEEEEeCCCCCCCH-------HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 62 NGYDIVISDVHMPDMDG-------FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 62 ~~~dlvilD~~l~~~~g-------~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
...|.+.++...+...+ ......++....+|++....-.+.+.+..+++.||+.+..
T Consensus 135 ~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 135 AGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred cCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 45788888776664432 1334444445678888877666658888899999987653
No 316
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.70 E-value=54 Score=26.05 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=45.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHH-HHHhcCCCccEEEEeCCCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALD-MLRMSKNGYDIVISDVHMPDMD 77 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~-~l~~~~~~~dlvilD~~l~~~~ 77 (184)
.+.+|+|+......-.-+..+|...|.+|..+++....+. .++ ..|+|+.-..-|+.-
T Consensus 156 ~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~----~ADIvV~AvG~p~~i 214 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQ----NADIVCVGVGKPDLI 214 (285)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH----hCCEEEEecCCCCcC
Confidence 4789999999999999999999988998888776444443 333 379999988666653
No 317
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=55.52 E-value=1.2e+02 Score=25.10 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=44.0
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCC-------CCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHM-------PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l-------~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+..+..+.+. +..+|+|.++... +..+..++.+.++. .++|||. ..-.+.+.+.+++++||+....
T Consensus 142 ~~~e~a~~l~--eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVV--EAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHH--HCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 3555555555 4668999996532 12256666665554 4688876 4556678888999999998754
No 318
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=55.39 E-value=29 Score=26.17 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=44.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCC--CCCCCH--HHHHHHhcccCCCCE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH--MPDMDG--FKLHEQVGLEMDLPV 93 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~--l~~~~g--~~l~~~l~~~~~~~i 93 (184)
|+|+++|........+...|.+.|+.+...................+|.+|+--. .+...+ .++++++. ..+.||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~-~~~~Pi 79 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACA-AAGTPL 79 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHH-hCCCCE
Confidence 5799999988888888899998888766544322111111100123788877321 122122 23444442 236887
Q ss_pred EEEE
Q 029986 94 IMMS 97 (184)
Q Consensus 94 Ii~~ 97 (184)
+-+-
T Consensus 80 LGIC 83 (214)
T PRK07765 80 LGVC 83 (214)
T ss_pred EEEc
Confidence 7663
No 319
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=55.38 E-value=1.2e+02 Score=25.47 Aligned_cols=98 Identities=10% Similarity=0.093 Sum_probs=55.4
Q ss_pred EeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCC-CC---CCHHHHHHHhcc-cCCC-CEEEE
Q 029986 23 VDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PD---MDGFKLHEQVGL-EMDL-PVIMM 96 (184)
Q Consensus 23 vdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l-~~---~~g~~l~~~l~~-~~~~-~iIi~ 96 (184)
|--|..-.+.|...|...||++... ...+|+|++...- .. ....+.+++++. .+.. +||+.
T Consensus 9 C~~N~~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~~~~~~vvvg 75 (429)
T TIGR00089 9 CQMNEADSEIMAGLLKEAGYEVTDD-------------PEEADVIIINTCAVREKAEQKVRSRLGELAKLKKKNAKIVVA 75 (429)
T ss_pred CCCcHHHHHHHHHHHHHCcCEECCC-------------cccCCEEEEecceeechHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 4456777888899998888876532 2347999997421 12 234566666643 2333 44443
Q ss_pred EccCChHHHHHHH-HcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 97 SVDGCTQDVMKGV-THGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 97 ~~~~~~~~~~~a~-~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
..... ....+++ +....|++.-+-....+...+..+.
T Consensus 76 Gc~a~-~~~ee~~~~~~~vd~vvg~~~~~~~~~~l~~~~ 113 (429)
T TIGR00089 76 GCLAQ-REGEELLKRIPEVDIVLGPQNKERIPEAIESAE 113 (429)
T ss_pred Ccccc-cCHHHHHhhCCCCCEEECCCCHHHHHHHHHHHh
Confidence 32222 2222222 3333346777777777777776654
No 320
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=54.97 E-value=1.2e+02 Score=24.85 Aligned_cols=38 Identities=8% Similarity=0.126 Sum_probs=30.4
Q ss_pred CChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 100 GCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 100 ~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
...+.+..++++|.+=++-||+..++..+.+..+.+..
T Consensus 78 ~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g 115 (343)
T TIGR01761 78 QGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQG 115 (343)
T ss_pred cHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcC
Confidence 44678888999999999999999888888777776543
No 321
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=54.88 E-value=1.3e+02 Score=25.30 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=58.2
Q ss_pred CCeEEEEeC---CHHHHHHHHHHHHhc--CCe--EEEECCHHHHHHHHHhcCCCccEEEEeCCCCC--------C---CH
Q 029986 17 GLRVLVVDD---DPIWLRILEKMLRKC--LYE--VTKCNRAEIALDMLRMSKNGYDIVISDVHMPD--------M---DG 78 (184)
Q Consensus 17 ~~~Ilivdd---~~~~~~~l~~~L~~~--~~~--v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~--------~---~g 78 (184)
+..++++|- +......+-..++.. +.. +.-+.+.+++..++. .+.|.|.+-..-.. . ..
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~---aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ 241 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCLKVGIGPGSICTTRIVAGVGVPQ 241 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH---cCCCEEEECCCCCcCCcceeecCCCCCh
Confidence 455777664 222232233333432 222 335778888888775 56898886542111 1 12
Q ss_pred HHHH---HHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 79 FKLH---EQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 79 ~~l~---~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+..+ ..+....++|||.=..-.+...+.+|+.+||+....
T Consensus 242 ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 242 ITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 2333 333223468888777778899999999999998763
No 322
>PRK01362 putative translaldolase; Provisional
Probab=54.56 E-value=93 Score=23.58 Aligned_cols=82 Identities=23% Similarity=0.101 Sum_probs=50.5
Q ss_pred HHHHhcCCe--EEEECCHHHHHHHHHhcCCCccEEE--Ee-CCCCCCCHHHHHHHhcc----cCCCCEEEEEccCChHHH
Q 029986 35 KMLRKCLYE--VTKCNRAEIALDMLRMSKNGYDIVI--SD-VHMPDMDGFKLHEQVGL----EMDLPVIMMSVDGCTQDV 105 (184)
Q Consensus 35 ~~L~~~~~~--v~~~~~~~~~~~~l~~~~~~~dlvi--lD-~~l~~~~g~~l~~~l~~----~~~~~iIi~~~~~~~~~~ 105 (184)
..|...|.. ++.+.+..+++-... .+++.|= +. +.-.+.+|+++++++.. ...-.-|+.++..+...+
T Consensus 95 ~~L~~~Gi~v~~T~vfs~~Qa~~Aa~---aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v 171 (214)
T PRK01362 95 KALSKEGIKTNVTLIFSANQALLAAK---AGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHV 171 (214)
T ss_pred HHHHHCCCceEEeeecCHHHHHHHHh---cCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHH
Confidence 345556654 445667777776654 2344332 21 11235689998887732 222345566778889999
Q ss_pred HHHHHcCCCceEeCC
Q 029986 106 MKGVTHGACNYLLKP 120 (184)
Q Consensus 106 ~~a~~~ga~~~l~kP 120 (184)
.++..+|++ +++-|
T Consensus 172 ~~~~~~G~d-~iTi~ 185 (214)
T PRK01362 172 LEAALAGAD-IATIP 185 (214)
T ss_pred HHHHHcCCC-EEecC
Confidence 999999999 55444
No 323
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=54.36 E-value=99 Score=24.46 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=51.0
Q ss_pred CCCeEEEEeCCHHHH-HHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC--CCCCC-----CHHHHHHHhcc
Q 029986 16 AGLRVLVVDDDPIWL-RILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV--HMPDM-----DGFKLHEQVGL 87 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~-~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~--~l~~~-----~g~~l~~~l~~ 87 (184)
...+|++.|..|... ..|...|.+.|..+....+..-+.-+ . + .|.||+.. -+.++ -|--.+..+.+
T Consensus 134 k~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa~~~~m-~--~--vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak 208 (275)
T PRK08335 134 KRFKVILTESAPDYEGLALANELEFLGIEFEVITDAQLGLFA-K--E--ATLALVGADNVTRDGYVVNKAGTYLLALACH 208 (275)
T ss_pred CceEEEEecCCCchhHHHHHHHHHHCCCCEEEEeccHHHHHH-H--h--CCEEEECccEEecCCCEeehhhHHHHHHHHH
Confidence 456899999888644 35688888889988877765544432 2 2 78888844 33333 24334444445
Q ss_pred cCCCCEEEEEcc
Q 029986 88 EMDLPVIMMSVD 99 (184)
Q Consensus 88 ~~~~~iIi~~~~ 99 (184)
..++|+++.+..
T Consensus 209 ~~~vPfyV~a~~ 220 (275)
T PRK08335 209 DNGVPFYVAAET 220 (275)
T ss_pred HcCCCEEEECcc
Confidence 678999988543
No 324
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=54.31 E-value=1.1e+02 Score=24.20 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=44.4
Q ss_pred HHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCce------EeCCCCHHHHHHHHHHHHcCCC
Q 029986 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNY------LLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 80 ~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~------l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
+.+.++++..++|||....-.+.+.+.+++..||+.. +..|.-..++.+-+...+....
T Consensus 224 ~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g 288 (300)
T TIGR01037 224 RMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEG 288 (300)
T ss_pred HHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 5666676555789998888888899999999999863 5678666777777776665443
No 325
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.30 E-value=71 Score=25.43 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=33.7
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
.|-+ .-.+.+.+..++++|+|...+-+++++++.+++..+.
T Consensus 198 ~I~V-Ev~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~~ 238 (288)
T PRK07428 198 TIEV-ETETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLIR 238 (288)
T ss_pred EEEE-ECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 3444 4456889999999999988899999999999998653
No 326
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=54.21 E-value=54 Score=30.21 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=47.1
Q ss_pred CCccEEEEe-CCCCCCCHHH-HHHHhcccC-CCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 62 NGYDIVISD-VHMPDMDGFK-LHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 62 ~~~dlvilD-~~l~~~~g~~-l~~~l~~~~-~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
..+.|+|+| .++-...+++ |++.|..-+ ++.+|+++ .+.+.+...++.-+.-|-.++++.+++...|..+++.
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t--t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT--TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe--CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 457899987 4444445544 555554433 34444444 3344566667777777888899999999988887654
No 327
>PLN02476 O-methyltransferase
Probab=54.21 E-value=1.1e+02 Score=24.27 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=41.0
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCCe--EE-EECCHHHHHHHHHhc--CCCccEEEEeCC
Q 029986 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYE--VT-KCNRAEIALDMLRMS--KNGYDIVISDVH 72 (184)
Q Consensus 15 ~~~~~Ilivdd~~~~~~~l~~~L~~~~~~--v~-~~~~~~~~~~~l~~~--~~~~dlvilD~~ 72 (184)
++.-+|.=+|-++...+.-+..++..|+. +. ...++.+.+..+... ...+|+||+|..
T Consensus 141 ~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 141 PESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 33447999999999999988999888763 33 445666666554211 246999999985
No 328
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=54.20 E-value=94 Score=23.54 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=48.8
Q ss_pred CHHHHHHHHHhcCCCccEEE-EeCCCC---CCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE------e
Q 029986 49 RAEIALDMLRMSKNGYDIVI-SDVHMP---DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL------L 118 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvi-lD~~l~---~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l------~ 118 (184)
+..+..+.+. ..+++-++ .|..-. ....+++++++....++|+++-..-.+.+.+..++..|+++.+ .
T Consensus 150 ~~~~~~~~~~--~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 150 TPVEAAKRFE--ELGAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred CHHHHHHHHH--HcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 3444444443 34455444 455321 2234677888865567999988877778888889999999876 3
Q ss_pred CCCCHHHHH
Q 029986 119 KPIRIKELR 127 (184)
Q Consensus 119 kP~~~~~l~ 127 (184)
.|...+++.
T Consensus 228 ~~~~~~~~~ 236 (241)
T PRK13585 228 GKFTLEEAI 236 (241)
T ss_pred CCcCHHHHH
Confidence 455544443
No 329
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=54.11 E-value=44 Score=26.49 Aligned_cols=51 Identities=20% Similarity=0.346 Sum_probs=36.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEE-------ECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTK-------CNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~-------~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
|+|||...+-..-..|...|. .++++.. ..+.+...+.++ +..||+||--.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~--~~~PDvVIn~A 58 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIR--ETRPDVVINAA 58 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHH--hhCCCEEEECc
Confidence 569999999999999999998 4455543 335566666666 45699999433
No 330
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=54.10 E-value=1.3e+02 Score=25.27 Aligned_cols=118 Identities=11% Similarity=0.041 Sum_probs=59.9
Q ss_pred CCeEEEEeCCHHHH---HHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCC-CCCC--HHHHHHHh-c-cc
Q 029986 17 GLRVLVVDDDPIWL---RILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDMD--GFKLHEQV-G-LE 88 (184)
Q Consensus 17 ~~~Ilivdd~~~~~---~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l-~~~~--g~~l~~~l-~-~~ 88 (184)
+.+|.+++-|+... +.+..+-...++.+..+.+..+....+... ..+|+||+|.-= ...+ ..+.+..+ . ..
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~ 329 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-RDCDVILIDTAGRSQRDKRLIEELKALIEFSG 329 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccC
Confidence 56899999887432 334444444566666666766666666532 358999999731 1122 22223333 3 21
Q ss_pred CCC-CEEEEEccCChHHHHHH---H-HcCCCceE-eCCCCHHHHHHHHHHHHc
Q 029986 89 MDL-PVIMMSVDGCTQDVMKG---V-THGACNYL-LKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 89 ~~~-~iIi~~~~~~~~~~~~a---~-~~ga~~~l-~kP~~~~~l~~~l~~~~~ 135 (184)
... ..++++..........+ + ..+.+.++ +|=-....+-.+++.+..
T Consensus 330 ~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlDet~~~G~i~~~~~~ 382 (424)
T PRK05703 330 EPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDETSSLGSILSLLIE 382 (424)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEecccccccccHHHHHHHH
Confidence 222 25556554444444333 2 23555554 443333344444554443
No 331
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=54.01 E-value=97 Score=23.63 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=42.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCC
Q 029986 61 KNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121 (184)
Q Consensus 61 ~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~ 121 (184)
...||.|+.=.-.|..-|-.-.+.+-+..+.|.|+++... ...+++.++---.+|+.-+.
T Consensus 58 ~~~pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaP-g~~vkdeleeqGlGYIivk~ 117 (277)
T COG1927 58 EFNPDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAP-GLKVKDELEEQGLGYIIVKA 117 (277)
T ss_pred hcCCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCc-cchhHHHHHhcCCeEEEecC
Confidence 5679999987766777777767777556789999997654 45566666666666764433
No 332
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=53.98 E-value=1.4e+02 Score=28.94 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=61.7
Q ss_pred CeEEEE----eCCHHHHHHHHHHHHhcCCeEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHhccc
Q 029986 18 LRVLVV----DDDPIWLRILEKMLRKCLYEVTKCN---RAEIALDMLRMSKNGYDIVISDVHMPDM--DGFKLHEQVGLE 88 (184)
Q Consensus 18 ~~Iliv----dd~~~~~~~l~~~L~~~~~~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~--~g~~l~~~l~~~ 88 (184)
-+|++. |-|..=.....-+|+..||+|.... ..++.++.+. +..||+|.+...|... .-.++++.++..
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~--e~~~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAK--EENADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH--HhCCCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 367777 6777777778888899999998655 3566666665 5669999998776543 234466777543
Q ss_pred -CCCCEEEEEccCChHH-HHH--HHHcCCCceE
Q 029986 89 -MDLPVIMMSVDGCTQD-VMK--GVTHGACNYL 117 (184)
Q Consensus 89 -~~~~iIi~~~~~~~~~-~~~--a~~~ga~~~l 117 (184)
.++||++=...-+..+ ..+ .-..|++.|.
T Consensus 830 g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~ 862 (1229)
T PRK09490 830 GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYV 862 (1229)
T ss_pred CCCCeEEEEeeccchhhhhhhhhhcccCCcEEe
Confidence 4667665544333322 111 1112777664
No 333
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=53.42 E-value=1.1e+02 Score=24.37 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=43.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEEC--CHHHHHHHHH-hcCCCccEEEE-eCCCCCC--CHHHHHHHhcccCCC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCN--RAEIALDMLR-MSKNGYDIVIS-DVHMPDM--DGFKLHEQVGLEMDL 91 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~--~~~~~~~~l~-~~~~~~dlvil-D~~l~~~--~g~~l~~~l~~~~~~ 91 (184)
..+++++|.......+ ..+. ....+..+. +..+..+.+. .-..+-+++++ |..+|.. .|..+++.++. .++
T Consensus 38 aDvI~~edtr~t~~ll-~~~~-i~~~~~~~~~~~~~~~~~~i~~~l~~G~~ValvSdaGdP~I~dpg~~Lv~~~~~-~gi 114 (287)
T PRK14994 38 VDLIAAEDTRHTGLLL-QHFA-INARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCRE-AGI 114 (287)
T ss_pred CCEEEEeCCcchHHHH-hhcC-CCCEEEEccCCCHHHHHHHHHHHHHCCCeEEEEccCCCCceeCCHHHHHHHHHH-CCC
Confidence 3588888887664432 2232 122333333 2333333332 11344688888 8999964 57888888864 256
Q ss_pred CEEEEEc
Q 029986 92 PVIMMSV 98 (184)
Q Consensus 92 ~iIi~~~ 98 (184)
++.++..
T Consensus 115 ~v~vIPG 121 (287)
T PRK14994 115 RVVPLPG 121 (287)
T ss_pred CEEEeCC
Confidence 6666643
No 334
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=53.39 E-value=1.3e+02 Score=24.87 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=40.1
Q ss_pred CeEEEEeCCHH----HHHHHHHHHHhcCCeEEEEC---------CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHH
Q 029986 18 LRVLVVDDDPI----WLRILEKMLRKCLYEVTKCN---------RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQ 84 (184)
Q Consensus 18 ~~Ilivdd~~~----~~~~l~~~L~~~~~~v~~~~---------~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~ 84 (184)
-+++|+.|... ..+.+...|+..|..+..+. +.+++.+.++ ...+|.||- +.+++-++..+-
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~--~~~~D~Iia---iGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLK--ENNCDSVIS---LGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHH--HcCCCEEEE---eCCchHHHHHHH
Confidence 47888887643 34467777877776665543 2445555555 456999874 346677776665
Q ss_pred h
Q 029986 85 V 85 (184)
Q Consensus 85 l 85 (184)
+
T Consensus 107 i 107 (383)
T PRK09860 107 I 107 (383)
T ss_pred H
Confidence 5
No 335
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=53.25 E-value=1.4e+02 Score=25.61 Aligned_cols=66 Identities=21% Similarity=0.231 Sum_probs=45.2
Q ss_pred EEECCHHHHHHHHHhcCCCccEEEEeCCCCCC-------CHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCC
Q 029986 45 TKCNRAEIALDMLRMSKNGYDIVISDVHMPDM-------DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGAC 114 (184)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~-------~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~ 114 (184)
.++++.+++.... +..+|.|.+--..+.. -|.+.++++....++|++.+.. -+.+.+..++++|++
T Consensus 395 ~S~h~~~e~~~a~---~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGG-I~~~~~~~~~~~G~~ 467 (502)
T PLN02898 395 VSCKTPEQAEQAW---KDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGG-ISASNAASVMESGAP 467 (502)
T ss_pred EeCCCHHHHHHHh---hcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECC-CCHHHHHHHHHcCCC
Confidence 3566777665553 3568998764433322 2678888876556899998854 457778889999998
No 336
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=53.18 E-value=1e+02 Score=24.84 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=43.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc--CC---eEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHH
Q 029986 19 RVLVVDDDPIWLRILEKMLRKC--LY---EVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKL 81 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~--~~---~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l 81 (184)
.|++||-+....+.=+.++... || .|. ...++-..++.+. ++.+|+||+|..=|.+.+-++
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~--~~~~dVii~dssdpvgpa~~l 213 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK--ENPFDVIITDSSDPVGPACAL 213 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc--cCCceEEEEecCCccchHHHH
Confidence 5888888888888777777653 44 232 4456766666654 667999999998887776554
No 337
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=53.09 E-value=95 Score=23.51 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=48.4
Q ss_pred ECCHHHHHHHHHhcCCCccEEEEeCCCCC-CCH--HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 47 CNRAEIALDMLRMSKNGYDIVISDVHMPD-MDG--FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~dlvilD~~l~~-~~g--~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
..+..+....+.. -..+++|++|+.--+ ++| .+++.++......|+++=..-...+....+...|+++.++-
T Consensus 136 ~ed~le~Vk~l~~-~~~~~lIvLDi~aVGt~~G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~~Gv~gvLva 210 (229)
T COG1411 136 LEDFLETVKDLNY-RRDPGLIVLDIGAVGTKSGPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLGMGVSGVLVA 210 (229)
T ss_pred chhHHHHHHHHhc-cCCCCeEEEEccccccccCCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhcCCCceeeeh
Confidence 3444455554432 345899999996543 333 56777776555667777666666788888888999998864
No 338
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=52.92 E-value=1.2e+02 Score=24.58 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHH
Q 029986 50 AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129 (184)
Q Consensus 50 ~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~ 129 (184)
.++..+++. . .|+.++- ..+..-|..+++.+. ..+|||... . ....+.+..|..+++..|.+.+++.+.
T Consensus 291 ~~~~~~~l~--~--adv~v~~-s~~e~~~~~llEAmA--~G~PVIas~-~---~g~~e~i~~~~~G~lv~~~d~~~la~~ 359 (396)
T cd03818 291 YDQYLALLQ--V--SDVHVYL-TYPFVLSWSLLEAMA--CGCLVVGSD-T---APVREVITDGENGLLVDFFDPDALAAA 359 (396)
T ss_pred HHHHHHHHH--h--CcEEEEc-CcccccchHHHHHHH--CCCCEEEcC-C---CCchhhcccCCceEEcCCCCHHHHHHH
Confidence 345555554 2 4776653 334555566677663 467887532 2 234455677889999999999999999
Q ss_pred HHHHHcC
Q 029986 130 WQHVAQQ 136 (184)
Q Consensus 130 l~~~~~~ 136 (184)
+..++..
T Consensus 360 i~~ll~~ 366 (396)
T cd03818 360 VIELLDD 366 (396)
T ss_pred HHHHHhC
Confidence 9988763
No 339
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.81 E-value=1.1e+02 Score=24.11 Aligned_cols=91 Identities=11% Similarity=-0.019 Sum_probs=57.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHh----cC--C-eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc--C
Q 029986 19 RVLVVDDDPIWLRILEKMLRK----CL--Y-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE--M 89 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~----~~--~-~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~--~ 89 (184)
.|+|=|.+-.....+...+.. .+ . --.++++.+++.+... .++|.|.+|- -|.+.++++... .
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~---~gaDyI~lD~-----~~~e~l~~~~~~~~~ 231 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVA---AGADIIMFDN-----RTPDEIREFVKLVPS 231 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH---cCCCEEEECC-----CCHHHHHHHHHhcCC
Confidence 477777776666555555432 23 2 2347888888888764 5689999973 344555555322 2
Q ss_pred CCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 90 DLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 90 ~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
++|+..+ ..-+.+.+....+.|++..-+
T Consensus 232 ~i~i~Ai-GGIt~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 232 AIVTEAS-GGITLENLPAYGGTGVDYISL 259 (277)
T ss_pred CceEEEE-CCCCHHHHHHHHHcCCCEEEE
Confidence 2333333 456778888999999997654
No 340
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.67 E-value=1.2e+02 Score=24.17 Aligned_cols=91 Identities=19% Similarity=0.063 Sum_probs=57.5
Q ss_pred eEEEEeCCHHHH--H--HHHHHHHh----cCC---eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc
Q 029986 19 RVLVVDDDPIWL--R--ILEKMLRK----CLY---EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL 87 (184)
Q Consensus 19 ~Ilivdd~~~~~--~--~l~~~L~~----~~~---~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~ 87 (184)
.|+|=|.+-... . .+...++. .++ -...+.+.+++.+.+. .++|+|.+|-. +-.+--+.+..++
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~---~gaDiImLDn~-s~e~l~~av~~~~- 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLA---AGVDTIMLDNF-SLDDLREGVELVD- 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHh---cCCCEEEECCC-CHHHHHHHHHHhC-
Confidence 377877776643 1 35555543 232 2357889999999875 56899999943 2222223333332
Q ss_pred cCCCCEEEEEccCChHHHHHHHHcCCCce
Q 029986 88 EMDLPVIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 88 ~~~~~iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
....+-.+..-+.+.+......|+|-.
T Consensus 236 --~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 236 --GRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred --CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 223666677778888888888998843
No 341
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=52.61 E-value=85 Score=22.56 Aligned_cols=52 Identities=23% Similarity=0.292 Sum_probs=38.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
.+.+|.++.+.. ....+...... +..+..+.+.+++++++. ....|.++.+.
T Consensus 109 ~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~--~g~~d~~i~~~ 160 (225)
T PF00497_consen 109 KGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALL--SGRIDAFIVDE 160 (225)
T ss_dssp TTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHH--TTSSSEEEEEH
T ss_pred cCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHh--cCCeeeeeccc
Confidence 456888888865 44445554433 577788999999999998 56799999975
No 342
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=52.61 E-value=93 Score=23.05 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=31.4
Q ss_pred ccEEEEeCCCCCCCH-------HHHHHHhccc-C--CC-CEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 64 YDIVISDVHMPDMDG-------FKLHEQVGLE-M--DL-PVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 64 ~dlvilD~~l~~~~g-------~~l~~~l~~~-~--~~-~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+|.+.++...++.+| .+.++.++.. + .. +.|.+...-+.+.+..+.+.|++.++.
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvv 197 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVA 197 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 676666654454443 2333333321 1 12 445455556677777888899997754
No 343
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=52.43 E-value=99 Score=23.30 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=39.2
Q ss_pred CCCccEEEE-eCCCC---CCCHHHHHHHhcccCCCCEEEEEccCChHHHHH-HHHcCCCceEe
Q 029986 61 KNGYDIVIS-DVHMP---DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMK-GVTHGACNYLL 118 (184)
Q Consensus 61 ~~~~dlvil-D~~l~---~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~-a~~~ga~~~l~ 118 (184)
+.+.|.+++ ++.-. .+-.++++++++...++|++....-.+.+.+.+ +...|+++.+.
T Consensus 164 ~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 164 QLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 445675555 43221 112367888886666789998887777888888 77789998764
No 344
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=52.38 E-value=1.1e+02 Score=23.64 Aligned_cols=74 Identities=9% Similarity=0.140 Sum_probs=48.3
Q ss_pred eEEEEeCC-HHHHHHHHHHHHhcCCeEEEE-------------CCHHHHHHHHHh-cCCCccEEEEeCCCCCCCHHHHHH
Q 029986 19 RVLVVDDD-PIWLRILEKMLRKCLYEVTKC-------------NRAEIALDMLRM-SKNGYDIVISDVHMPDMDGFKLHE 83 (184)
Q Consensus 19 ~Ilivdd~-~~~~~~l~~~L~~~~~~v~~~-------------~~~~~~~~~l~~-~~~~~dlvilD~~l~~~~g~~l~~ 83 (184)
||.|+..= +...+.+..+|+..|++|..+ -+.+...+++.. ....+|.||+-. .+...++++.
T Consensus 122 RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisC--TnLrt~~vi~ 199 (239)
T TIGR02990 122 RISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSC--TALRAATCAQ 199 (239)
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeC--CCchhHHHHH
Confidence 67777753 346677888999989887644 234445555542 244578888864 3566777788
Q ss_pred HhcccCCCCEE
Q 029986 84 QVGLEMDLPVI 94 (184)
Q Consensus 84 ~l~~~~~~~iI 94 (184)
.+...-..||+
T Consensus 200 ~lE~~lGkPVl 210 (239)
T TIGR02990 200 RIEQAIGKPVV 210 (239)
T ss_pred HHHHHHCCCEE
Confidence 87555667775
No 345
>PRK08185 hypothetical protein; Provisional
Probab=52.30 E-value=94 Score=24.69 Aligned_cols=67 Identities=16% Similarity=0.381 Sum_probs=47.2
Q ss_pred ECCHHHHHHHHHhcCCCccEEEEeCC----------CCCCCHHHHHHHhcccCCCCEEEEEccCC-hHHHHHHHHcCCCc
Q 029986 47 CNRAEIALDMLRMSKNGYDIVISDVH----------MPDMDGFKLHEQVGLEMDLPVIMMSVDGC-TQDVMKGVTHGACN 115 (184)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~dlvilD~~----------l~~~~g~~l~~~l~~~~~~~iIi~~~~~~-~~~~~~a~~~ga~~ 115 (184)
+++.+++.+... ..++|.+-+.+. -|+.+ +++++.+++..++|+++...... .+...++.+.|+.-
T Consensus 148 ~t~peea~~f~~--~TgvD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~K 224 (283)
T PRK08185 148 YTDPEQAEDFVS--RTGVDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGK 224 (283)
T ss_pred CCCHHHHHHHHH--hhCCCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeE
Confidence 457788888876 445898888331 13334 88899997666899998876544 45677899999764
Q ss_pred e
Q 029986 116 Y 116 (184)
Q Consensus 116 ~ 116 (184)
+
T Consensus 225 i 225 (283)
T PRK08185 225 I 225 (283)
T ss_pred E
Confidence 4
No 346
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=52.30 E-value=78 Score=25.05 Aligned_cols=86 Identities=9% Similarity=0.120 Sum_probs=55.7
Q ss_pred ECCHHHHHHHHHhcCCCccEEEEeCC----CC---CCCHHHHHHHhcccCCCCEEEEEc-cCChHHHHHHHHcCCCceEe
Q 029986 47 CNRAEIALDMLRMSKNGYDIVISDVH----MP---DMDGFKLHEQVGLEMDLPVIMMSV-DGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~dlvilD~~----l~---~~~g~~l~~~l~~~~~~~iIi~~~-~~~~~~~~~a~~~ga~~~l~ 118 (184)
+++.+++.+... ..++|.+-+.+. .. ..-+++.++.+++..++|+++... .-+.+...++.+.|+...=.
T Consensus 152 ~t~~eea~~f~~--~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv 229 (282)
T TIGR01859 152 LADPDEAEQFVK--ETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINI 229 (282)
T ss_pred cCCHHHHHHHHH--HHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 557888888875 345888875421 11 123588899887666799988863 33456778899999998755
Q ss_pred CCCCHHHHHHHHHHHH
Q 029986 119 KPIRIKELRNIWQHVA 134 (184)
Q Consensus 119 kP~~~~~l~~~l~~~~ 134 (184)
--.-.....+.++..+
T Consensus 230 ~T~l~~a~~~~~~~~~ 245 (282)
T TIGR01859 230 DTDCRIAFTAAIRKVL 245 (282)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4433344444555444
No 347
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=52.02 E-value=1.1e+02 Score=23.61 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=46.6
Q ss_pred CCCccEEEE-eCCCC---CCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcC-CCceEe------CCCCHHHHHHH
Q 029986 61 KNGYDIVIS-DVHMP---DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHG-ACNYLL------KPIRIKELRNI 129 (184)
Q Consensus 61 ~~~~dlvil-D~~l~---~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~g-a~~~l~------kP~~~~~l~~~ 129 (184)
+.+.|.+++ |+.-. .+-.+++++.++...++|++....-.+.+.+.++++.| +++.+. .-++..++.+.
T Consensus 166 ~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~ 245 (254)
T TIGR00735 166 KLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEY 245 (254)
T ss_pred HcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHH
Confidence 455676655 33111 11225778888666688999888888889999999988 888543 45566666555
Q ss_pred HH
Q 029986 130 WQ 131 (184)
Q Consensus 130 l~ 131 (184)
+.
T Consensus 246 ~~ 247 (254)
T TIGR00735 246 LA 247 (254)
T ss_pred HH
Confidence 44
No 348
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=51.68 E-value=42 Score=25.86 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=38.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-------CCeEEEECCHHHHHHHHHhcCC-CccEEEEeCCCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKC-------LYEVTKCNRAEIALDMLRMSKN-GYDIVISDVHMPDMD 77 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~-------~~~v~~~~~~~~~~~~l~~~~~-~~dlvilD~~l~~~~ 77 (184)
+..+|-+||=|+...+..++++... ...+ ...|+...++. ... .+|+||+|+.-|...
T Consensus 99 ~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i-~~~Dg~~~l~~---~~~~~yDvIi~D~~dp~~~ 164 (246)
T PF01564_consen 99 PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI-IIGDGRKFLKE---TQEEKYDVIIVDLTDPDGP 164 (246)
T ss_dssp T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE-EESTHHHHHHT---SSST-EEEEEEESSSTTSC
T ss_pred CcceEEEEecChHHHHHHHHhchhhccccCCCceEE-EEhhhHHHHHh---ccCCcccEEEEeCCCCCCC
Confidence 3458999999999999988887642 1233 56566555543 334 799999999776543
No 349
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.35 E-value=96 Score=24.44 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCeEEEECCHHHHHHH-------HHhcCCCccEEEEeCCCCCCCHHHHHHHhcc--cCCCCEEEEEccCC
Q 029986 31 RILEKMLRKCLYEVTKCNRAEIALDM-------LRMSKNGYDIVISDVHMPDMDGFKLHEQVGL--EMDLPVIMMSVDGC 101 (184)
Q Consensus 31 ~~l~~~L~~~~~~v~~~~~~~~~~~~-------l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~--~~~~~iIi~~~~~~ 101 (184)
..+..+|++.|+.+.........+.. .......+|++|+ -++|| .+++..+. ..++||+-+.
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDG-T~L~aa~~~~~~~~PilgIn---- 73 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIV----IGGDG-NMLGRARVLAKYDIPLIGIN---- 73 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEE----ECCcH-HHHHHHHHhccCCCcEEEEe----
Confidence 45566777778777654322111100 0111224788887 26777 44444432 2367877653
Q ss_pred hHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 102 TQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 102 ~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
.|-.+|+. +++.+++...+..++.
T Consensus 74 ---------~G~lGFL~-~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 74 ---------RGNLGFLT-DIDPKNAYEQLEACLE 97 (272)
T ss_pred ---------CCCCcccc-cCCHHHHHHHHHHHHh
Confidence 36678888 6788899998988887
No 350
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=51.35 E-value=1e+02 Score=23.20 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHhcCCCc-cEEEEeCCCCC---CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 48 NRAEIALDMLRMSKNGY-DIVISDVHMPD---MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 48 ~~~~~~~~~l~~~~~~~-dlvilD~~l~~---~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
.+..+..+.+. +.++ .+++.|+.-.+ ..-+++++++......|+++=..-.+.+.+..+++.|++..+.-
T Consensus 30 ~dp~~~a~~~~--~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 30 GDPVNAARIYN--AKGADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCHHHHHHHHH--HcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 46677777665 3334 47888886543 23456777776556788877666777788888899998877654
No 351
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=51.13 E-value=1.2e+02 Score=23.97 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=48.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHh--cCCCccEEEEeCCCCCCC--HHHHHHHhcccCCCCE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRM--SKNGYDIVISDVHMPDMD--GFKLHEQVGLEMDLPV 93 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~--~~~~~dlvilD~~l~~~~--g~~l~~~l~~~~~~~i 93 (184)
.-++.|||....+..|..+=-.....-..-.+.++....+.. ....-=.++.|..||..+ |+.+++..+. .+++|
T Consensus 31 ~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~~-~gi~V 109 (275)
T COG0313 31 VDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAARE-AGIRV 109 (275)
T ss_pred CCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHHhcCCeEEEEecCCCCcccCccHHHHHHHHH-cCCcE
Confidence 458999999988877664332221111122333333333321 122234556699999754 9999998864 46888
Q ss_pred EEEEccCC
Q 029986 94 IMMSVDGC 101 (184)
Q Consensus 94 Ii~~~~~~ 101 (184)
+.+...+.
T Consensus 110 ~~lPG~sA 117 (275)
T COG0313 110 VPLPGPSA 117 (275)
T ss_pred EecCCccH
Confidence 87765443
No 352
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.73 E-value=1.2e+02 Score=23.78 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=47.2
Q ss_pred HHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCCEEEEEccCChHHHHHHH
Q 029986 33 LEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLPVIMMSVDGCTQDVMKGV 109 (184)
Q Consensus 33 l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~iIi~~~~~~~~~~~~a~ 109 (184)
+..+|++.|+++... . ..+|++|+ -++|| .+++..+.. ..+|++-+
T Consensus 22 l~~~l~~~g~~~~~~---------~----~~~D~vi~----lGGDG-T~L~a~~~~~~~~~~pilgI------------- 70 (264)
T PRK03501 22 LKKIAEEYGFTVVDH---------P----KNANIIVS----IGGDG-TFLQAVRKTGFREDCLYAGI------------- 70 (264)
T ss_pred HHHHHHHCCCEEEcC---------C----CCccEEEE----ECCcH-HHHHHHHHhcccCCCeEEeE-------------
Confidence 555666667766522 0 23688877 26777 344444322 24565544
Q ss_pred Hc-CCCceEeCCCCHHHHHHHHHHHHcCCCC
Q 029986 110 TH-GACNYLLKPIRIKELRNIWQHVAQQPKP 139 (184)
Q Consensus 110 ~~-ga~~~l~kP~~~~~l~~~l~~~~~~~~~ 139 (184)
.. |-.+|+. .++.+++.+.+..+..+...
T Consensus 71 n~~G~lGFL~-~~~~~~~~~~l~~i~~g~~~ 100 (264)
T PRK03501 71 STKDQLGFYC-DFHIDDLDKMIQAITKEEIE 100 (264)
T ss_pred ecCCCCeEcc-cCCHHHHHHHHHHHHcCCcE
Confidence 23 6778985 68889999999999887643
No 353
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=50.61 E-value=54 Score=25.22 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=34.4
Q ss_pred EEEEeCCHHHHH----------HHHHHHHhcCCeEEEEC--CHHHHHHHHHhc---CCCccEEEEeCC
Q 029986 20 VLVVDDDPIWLR----------ILEKMLRKCLYEVTKCN--RAEIALDMLRMS---KNGYDIVISDVH 72 (184)
Q Consensus 20 Ilivdd~~~~~~----------~l~~~L~~~~~~v~~~~--~~~~~~~~l~~~---~~~~dlvilD~~ 72 (184)
|.|+|.|..... -|...++.+|++|..+. +.++..+.+... +..|.+||++..
T Consensus 174 iaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~Tv 241 (243)
T COG3959 174 IAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAKTV 241 (243)
T ss_pred EEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEecc
Confidence 778887765433 36677777888888765 455555544321 336888888864
No 354
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=50.56 E-value=1.4e+02 Score=24.30 Aligned_cols=107 Identities=19% Similarity=0.170 Sum_probs=66.4
Q ss_pred CeEEEEeCC---H-HHHHHHHHHHHhcCC--eEEEEC--CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccC
Q 029986 18 LRVLVVDDD---P-IWLRILEKMLRKCLY--EVTKCN--RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEM 89 (184)
Q Consensus 18 ~~Ilivdd~---~-~~~~~l~~~L~~~~~--~v~~~~--~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~ 89 (184)
++++++.+. . ...+.+....+..+. .+.... +.++..+++. . .|+.++-.. .+.-|..+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~--~--ad~~v~ps~-~E~~g~~~lEAma--~ 325 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYR--A--ADVVAVPSY-NESFGLVAMEAQA--C 325 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHH--h--CCEEEECCC-CCCcChHHHHHHH--c
Confidence 667777641 1 344556666665543 244332 3455555554 2 588877543 3444666666663 4
Q ss_pred CCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 90 DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 90 ~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
.+|||...... ..+.+..|..+++..|-+.+++.+.+..++.
T Consensus 326 G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 326 GTPVVAARVGG----LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred CCCEEEecCCC----cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 68887653322 3345567888999999999999999998876
No 355
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=50.12 E-value=1.1e+02 Score=23.19 Aligned_cols=95 Identities=13% Similarity=0.129 Sum_probs=54.6
Q ss_pred HHHHHhcC-CeEEEECCHHHHHHHHHh-cCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHc
Q 029986 34 EKMLRKCL-YEVTKCNRAEIALDMLRM-SKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTH 111 (184)
Q Consensus 34 ~~~L~~~~-~~v~~~~~~~~~~~~l~~-~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ 111 (184)
...+...+ .-|....+.++++.+... .+.+.++ +++.+......+.++.++....--+|=-.+--+.+.+..+..+
T Consensus 7 ~~~l~~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~--IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~a 84 (211)
T COG0800 7 LSKLKAQPVVPVIRGDDVEEALPLAKALIEGGIPA--IEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAA 84 (211)
T ss_pred HHHHHHCCeeEEEEeCCHHHHHHHHHHHHHcCCCe--EEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHc
Confidence 34444443 345566677777766642 2445553 3445555567777777753322222222333456777888888
Q ss_pred CCCceEeCCCCHHHHHHHHH
Q 029986 112 GACNYLLKPIRIKELRNIWQ 131 (184)
Q Consensus 112 ga~~~l~kP~~~~~l~~~l~ 131 (184)
|+. |++.|--..++.+...
T Consensus 85 Ga~-fiVsP~~~~ev~~~a~ 103 (211)
T COG0800 85 GAQ-FIVSPGLNPEVAKAAN 103 (211)
T ss_pred CCC-EEECCCCCHHHHHHHH
Confidence 887 7777776666655433
No 356
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=49.95 E-value=1.1e+02 Score=23.32 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCC-CC--HHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPD-MD--GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~-~~--g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+..+..+.+... .--.+++.|+.--+ +. .+++++.++...+.|+|+-..-.+.+....+.+.|+++.+.
T Consensus 148 ~~~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 148 DLEEFAKRLEEL-GAGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EHHHHHHHHHHT-T-SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred CHHHHHHHHHhc-CCcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 466666666532 22368888986543 23 35677788655588999887777889999999999988775
No 357
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=49.82 E-value=31 Score=26.94 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=45.4
Q ss_pred CCCeEEEEeCCHHHHH-HHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCC--CCCC-----CHHHHHHHhcc
Q 029986 16 AGLRVLVVDDDPIWLR-ILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH--MPDM-----DGFKLHEQVGL 87 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~-~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~--l~~~-----~g~~l~~~l~~ 87 (184)
...+|+++|..|...- .+...|.+.|..+....+..-+.- +. . ..|.|++... ++++ .|-..+..+.+
T Consensus 132 ~~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d~~~~~~-m~--~-~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak 207 (282)
T PF01008_consen 132 KKFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPDSAVGYV-MP--R-DVDKVLIGADAVLANGGVVNKVGTLQLALAAK 207 (282)
T ss_dssp EEEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-GGGHHHH-HH--C-TESEEEEE-SEEETTS-EEEETTHHHHHHHHH
T ss_pred CeEEEEEccCCcchhhhhHHHHhhhcceeEEEEechHHHHH-HH--H-hCCeeEEeeeEEecCCCEeehhhHHHHHHHHH
Confidence 4568999998875333 355677778999988876543332 23 2 3788887553 3333 35455555555
Q ss_pred cCCCCEEEEEcc
Q 029986 88 EMDLPVIMMSVD 99 (184)
Q Consensus 88 ~~~~~iIi~~~~ 99 (184)
..++|+++++..
T Consensus 208 ~~~vPv~v~~~~ 219 (282)
T PF01008_consen 208 EFNVPVYVLAES 219 (282)
T ss_dssp HTT-EEEEE--G
T ss_pred hhCCCEEEEccc
Confidence 578999999743
No 358
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=49.75 E-value=91 Score=22.55 Aligned_cols=56 Identities=30% Similarity=0.321 Sum_probs=39.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCH-HHHHHHHHhcCCCccEEEEeCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRA-EIALDMLRMSKNGYDIVISDVHMPD 75 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~-~~~~~~l~~~~~~~dlvilD~~l~~ 75 (184)
.+.+|+|+.--......+...|...|..+..++.. ++..+.+. ..|+||.-..-|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~----~aDiVIsat~~~~ 99 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTK----QADIVIVAVGKPG 99 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHh----hCCEEEEcCCCCc
Confidence 46789999998887888888898888776655443 33444433 3799998765443
No 359
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=49.72 E-value=1.3e+02 Score=24.25 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=39.1
Q ss_pred CCCccEEEEeCCCCCC-CHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 61 KNGYDIVISDVHMPDM-DGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 61 ~~~~dlvilD~~l~~~-~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+..+|+|.+|...... ...++++.++.. ++++|++ ..-.+.+.+..+.++||+....
T Consensus 104 eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 104 EAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 4568999998855332 346778888643 3455554 3445678889999999996654
No 360
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=49.60 E-value=1.5e+02 Score=24.60 Aligned_cols=63 Identities=21% Similarity=0.141 Sum_probs=39.0
Q ss_pred CeEEEEeCCHHH----HHHHHHHHHhcCCeEEEEC---------CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHH
Q 029986 18 LRVLVVDDDPIW----LRILEKMLRKCLYEVTKCN---------RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQ 84 (184)
Q Consensus 18 ~~Ilivdd~~~~----~~~l~~~L~~~~~~v~~~~---------~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~ 84 (184)
-+++|+.|.... .+.+...|+..|..+..+. ...++.+.++ +..+|.||- +.+++-++..+-
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r--~~~~D~Iia---vGGGS~iD~AKa 124 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLR--ESGCDGVIA---FGGGSVLDAAKA 124 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHH--hcCcCEEEE---eCChHHHHHHHH
Confidence 367778775432 2457777877776665542 2445666665 566998874 456666666654
Q ss_pred h
Q 029986 85 V 85 (184)
Q Consensus 85 l 85 (184)
+
T Consensus 125 i 125 (395)
T PRK15454 125 V 125 (395)
T ss_pred H
Confidence 4
No 361
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=49.57 E-value=1.5e+02 Score=24.37 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=44.8
Q ss_pred ccEEEEeCC-CCCCCHHHHHHHhcccCCCCEEEEEc-cCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 64 YDIVISDVH-MPDMDGFKLHEQVGLEMDLPVIMMSV-DGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 64 ~dlvilD~~-l~~~~g~~l~~~l~~~~~~~iIi~~~-~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
.+.+|++.. +.-.---.++..+ .....++.... ..+...+...++.|+++.+.+|-+..++.+....+..
T Consensus 89 ~~~viv~~~dW~iIPlEnlIA~~--~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~~~ 160 (344)
T PRK02290 89 VDYVIVEGRDWTIIPLENLIADL--GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALIEE 160 (344)
T ss_pred CCEEEEECCCCcEecHHHHHhhh--cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHHhc
Confidence 355666543 2222223455555 23455555543 3334567788999999999999999999988887654
No 362
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=49.42 E-value=1.6e+02 Score=24.78 Aligned_cols=119 Identities=12% Similarity=0.069 Sum_probs=60.6
Q ss_pred CCeEEEEeCCHHH---HHHHHHHHHhcCCeEEEECCHHHHHHHHHhc--CCCccEEEEeCCCCCCCHHHHHHHhc---c-
Q 029986 17 GLRVLVVDDDPIW---LRILEKMLRKCLYEVTKCNRAEIALDMLRMS--KNGYDIVISDVHMPDMDGFKLHEQVG---L- 87 (184)
Q Consensus 17 ~~~Ilivdd~~~~---~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~--~~~~dlvilD~~l~~~~g~~l~~~l~---~- 87 (184)
+.+|.+++-|+.. .+.+..+-...+..+..+.+..+..+.+... ...+|+||+|.-=-....-+.+..++ .
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~ 313 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDV 313 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhc
Confidence 4678888877652 3455555555576666667777766655421 14589999998311111123333332 1
Q ss_pred -cCCCCEEEEEccCChHHHHHHH----HcCCCceE-eCCCCHHHHHHHHHHHHc
Q 029986 88 -EMDLPVIMMSVDGCTQDVMKGV----THGACNYL-LKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 88 -~~~~~iIi~~~~~~~~~~~~a~----~~ga~~~l-~kP~~~~~l~~~l~~~~~ 135 (184)
.++..+++++...........+ ..|.++++ +|=-....+-.+++.+..
T Consensus 314 ~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKLDET~~~G~~Lsv~~~ 367 (407)
T PRK12726 314 VHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQE 367 (407)
T ss_pred cCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEcccCCCCccHHHHHHHH
Confidence 1222234444333333443332 24556665 443333445555555544
No 363
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=49.18 E-value=1.3e+02 Score=23.63 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCeEEE----ECCHHH---HHHHHHhcCCCccEEEEeCCC---CCCC----HHHHHHHhcccCCCCEEEE
Q 029986 31 RILEKMLRKCLYEVTK----CNRAEI---ALDMLRMSKNGYDIVISDVHM---PDMD----GFKLHEQVGLEMDLPVIMM 96 (184)
Q Consensus 31 ~~l~~~L~~~~~~v~~----~~~~~~---~~~~l~~~~~~~dlvilD~~l---~~~~----g~~l~~~l~~~~~~~iIi~ 96 (184)
..|...+.+.|..|.. +.+.++ +.+.+.. ..-++++++.... ++-. .+..+..++...+.||++-
T Consensus 124 ~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~-~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D 202 (266)
T PRK13398 124 FELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMS-EGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLPIIVD 202 (266)
T ss_pred HHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEEe
Confidence 3344445555544432 223444 3444442 2336899988632 2222 2334445555557898874
Q ss_pred EccC-C-----hHHHHHHHHcCCCceE
Q 029986 97 SVDG-C-----TQDVMKGVTHGACNYL 117 (184)
Q Consensus 97 ~~~~-~-----~~~~~~a~~~ga~~~l 117 (184)
++.. . ......|...||++.+
T Consensus 203 ~sHs~G~~~~v~~~~~aAva~Ga~Gl~ 229 (266)
T PRK13398 203 PSHATGRRELVIPMAKAAIAAGADGLM 229 (266)
T ss_pred CCCcccchhhHHHHHHHHHHcCCCEEE
Confidence 3332 2 4567788999998766
No 364
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=49.08 E-value=1e+02 Score=24.24 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=23.3
Q ss_pred CeEEEEeCCHHH---HHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 18 LRVLVVDDDPIW---LRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 18 ~~Ilivdd~~~~---~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
.+|.+++-|+.. .+.+..+-...++.+..+.+..+..+.+... ..+|+||+|.
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~~~d~vliDt 280 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-RDKDLILIDT 280 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-cCCCEEEEeC
Confidence 456666555421 2223332222344444444444444444321 2356666664
No 365
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=48.99 E-value=1.2e+02 Score=23.13 Aligned_cols=71 Identities=15% Similarity=0.065 Sum_probs=48.1
Q ss_pred CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 42 YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP-DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 42 ~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~-~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
..+......++.-+++. .+.++|=+|...- .-+| .+-+.++.......+++++-++.++...|.++|++ |+
T Consensus 80 s~v~ITptlkeVd~L~~---~Ga~IIA~DaT~R~RP~~-~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D-~I 151 (229)
T COG3010 80 SPVRITPTLKEVDALAE---AGADIIAFDATDRPRPDG-DLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFD-II 151 (229)
T ss_pred CCceecccHHHHHHHHH---CCCcEEEeecccCCCCcc-hHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCc-EE
Confidence 34666666666666554 4589999998663 2344 33333333344567888999999999999999987 54
No 366
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=48.76 E-value=1.4e+02 Score=24.32 Aligned_cols=82 Identities=13% Similarity=-0.020 Sum_probs=52.7
Q ss_pred CCCeEEEEeCCHHHHHH--HHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC--CCCCC-----CHHHHHHHhc
Q 029986 16 AGLRVLVVDDDPIWLRI--LEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV--HMPDM-----DGFKLHEQVG 86 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~--l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~--~l~~~-----~g~~l~~~l~ 86 (184)
...+|+++|..|...-. +...|.+.|..+....+..-+.-+ . ....|.||+.. .+.++ -|--.+..+.
T Consensus 179 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~~m-~--~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~A 255 (331)
T TIGR00512 179 RLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAHLM-K--HGEVDAVIVGADRIAANGDTANKIGTYQLAVLA 255 (331)
T ss_pred CceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHHHh-c--ccCCCEEEEcccEEecCCCEeehhhHHHHHHHH
Confidence 45789999998865532 356788889998888765444333 2 23589999844 33333 2434444454
Q ss_pred ccCCCCEEEEEccC
Q 029986 87 LEMDLPVIMMSVDG 100 (184)
Q Consensus 87 ~~~~~~iIi~~~~~ 100 (184)
+..++|+++++...
T Consensus 256 k~~~vPfyV~a~~~ 269 (331)
T TIGR00512 256 KHHGVPFYVAAPTS 269 (331)
T ss_pred HHhCCCEEEecccc
Confidence 56789999886543
No 367
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=48.60 E-value=1.5e+02 Score=24.31 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=52.2
Q ss_pred CCCeEEEEeCCHHHHHH--HHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC--CCCCC-----CHHHHHHHhc
Q 029986 16 AGLRVLVVDDDPIWLRI--LEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV--HMPDM-----DGFKLHEQVG 86 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~--l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~--~l~~~-----~g~~l~~~l~ 86 (184)
...+|++.|..|...-. +...|.+.|..+....+..-+.-+ . ....|.||+.. -+.++ -|--.+..+.
T Consensus 179 k~~~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Dsa~~~~M-~--~~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~A 255 (344)
T PRK05720 179 IDIHVYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLM-Q--TGKIDAVIVGADRIAANGDVANKIGTYQLAIAA 255 (344)
T ss_pred CceEEEEcCCCChhhhHHHHHHHHHHCCCCEEEEcccHHHHHh-c--ccCCCEEEEcccEEecCCCEeehhhHHHHHHHH
Confidence 45789999988865432 367788889988887765443322 2 23588898844 33333 3444455555
Q ss_pred ccCCCCEEEEEcc
Q 029986 87 LEMDLPVIMMSVD 99 (184)
Q Consensus 87 ~~~~~~iIi~~~~ 99 (184)
+..++|+++++..
T Consensus 256 k~~~vPfyV~a~~ 268 (344)
T PRK05720 256 KYHGVPFYVAAPS 268 (344)
T ss_pred HHhCCCEEEeccc
Confidence 5678999988654
No 368
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=48.55 E-value=1.5e+02 Score=24.07 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=44.1
Q ss_pred CeEEEEeCCHHHH---HHHHHHHHhcCCeEEE--E------CCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhc
Q 029986 18 LRVLVVDDDPIWL---RILEKMLRKCLYEVTK--C------NRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG 86 (184)
Q Consensus 18 ~~Ilivdd~~~~~---~~l~~~L~~~~~~v~~--~------~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~ 86 (184)
-|++||-|..... +.+...|+..|..+.. + .+..++.+.++ +..+|+||- +.+++-++..+.+.
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~--~~~~D~IIa---vGGGS~iD~aK~ia 97 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIAR--DNGADVVIG---IGGGKTLDTAKAVA 97 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHh--hcCCCEEEE---ecCchhhHHHHHHH
Confidence 4788888765533 3344555555554321 1 12334444444 456898765 46788888888775
Q ss_pred ccCCCCEEEEE
Q 029986 87 LEMDLPVIMMS 97 (184)
Q Consensus 87 ~~~~~~iIi~~ 97 (184)
.....|+|.+.
T Consensus 98 ~~~~~P~iaIP 108 (351)
T cd08170 98 DYLGAPVVIVP 108 (351)
T ss_pred HHcCCCEEEeC
Confidence 44467777664
No 369
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=48.48 E-value=1.3e+02 Score=23.54 Aligned_cols=109 Identities=13% Similarity=0.087 Sum_probs=61.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iI 94 (184)
..++.++.+-+. ...+...+++.+. .+......++..+.+. . .|++++-... ++-|..+++.+. ..+|||
T Consensus 223 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~--~--adi~v~ps~~-E~~~~~~lEAma--~G~PvI 294 (358)
T cd03812 223 NAKLLLVGDGEL-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQ--A--MDVFLFPSLY-EGLPLVLIEAQA--SGLPCI 294 (358)
T ss_pred CeEEEEEeCCch-HHHHHHHHHhcCCCCcEEEecccCCHHHHHH--h--cCEEEecccc-cCCCHHHHHHHH--hCCCEE
Confidence 467777776553 2344445544332 2333332334444443 2 5788775443 344666677663 468887
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
....... ...+..+ .+|+..+-+.+++.+++..++....
T Consensus 295 ~s~~~~~----~~~i~~~-~~~~~~~~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 295 LSDTITK----EVDLTDL-VKFLSLDESPEIWAEEILKLKSEDR 333 (358)
T ss_pred EEcCCch----hhhhccC-ccEEeCCCCHHHHHHHHHHHHhCcc
Confidence 6433322 2233333 3577777778999999999987654
No 370
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=48.26 E-value=1.2e+02 Score=23.24 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=44.2
Q ss_pred CCeEEEE------eCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhc
Q 029986 17 GLRVLVV------DDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG 86 (184)
Q Consensus 17 ~~~Iliv------dd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~ 86 (184)
+.+|+++ +|.........+.+.+.|+++......++..+.+. . .|+|++ +++|-+.+++.++
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~--~--ad~I~v----~GGnt~~l~~~l~ 98 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIE--N--AEAIFV----GGGNTFQLLKQLY 98 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHh--c--CCEEEE----CCccHHHHHHHHH
Confidence 3456666 34455566788888899999888877776666664 2 688888 4778888777664
No 371
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=48.17 E-value=84 Score=23.18 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=32.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvil 69 (184)
|+|+|+|--.-....+...|++.|+++....+.++ +. .+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~----~~----~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV----IL----AADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH----hC----CCCEEEE
Confidence 57999996666666778899999999988887642 21 2687776
No 372
>PRK14974 cell division protein FtsY; Provisional
Probab=47.81 E-value=1.5e+02 Score=24.12 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=54.5
Q ss_pred CCeEEEEeCCH---HHHHHHHHHHHhcCCeEEEECCH-------HHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhc
Q 029986 17 GLRVLVVDDDP---IWLRILEKMLRKCLYEVTKCNRA-------EIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG 86 (184)
Q Consensus 17 ~~~Ilivdd~~---~~~~~l~~~L~~~~~~v~~~~~~-------~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~ 86 (184)
+.+|++++.|. ...+.+..+....|..+.....+ .++++... ...+|+||+|.-=-.....+++..++
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~--~~~~DvVLIDTaGr~~~~~~lm~eL~ 245 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK--ARGIDVVLIDTAGRMHTDANLMDELK 245 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH--hCCCCEEEEECCCccCCcHHHHHHHH
Confidence 46788888774 33445555555556555432221 23333333 34589999998411111233444432
Q ss_pred -----ccCCCCEEEEEccCChHHH--HHHH--HcCCCceEeCCCC-HHHHHHHHHHHH
Q 029986 87 -----LEMDLPVIMMSVDGCTQDV--MKGV--THGACNYLLKPIR-IKELRNIWQHVA 134 (184)
Q Consensus 87 -----~~~~~~iIi~~~~~~~~~~--~~a~--~~ga~~~l~kP~~-~~~l~~~l~~~~ 134 (184)
..++..++++.+....+.. ...| ..|.++++.--++ ....-.++..+.
T Consensus 246 ~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G~~ls~~~ 303 (336)
T PRK14974 246 KIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAY 303 (336)
T ss_pred HHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCCccHHHHHHH
Confidence 1244445555433222222 2223 2577777644332 233333444333
No 373
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=47.79 E-value=1.6e+02 Score=24.37 Aligned_cols=65 Identities=22% Similarity=0.324 Sum_probs=42.9
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCC-------CCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHM-------PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l-------~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
+..+..+.+. +.+.|++.++-.. ...+..++.+.++ ..++|||. ..-.+.+.+..+++.|++..+
T Consensus 143 ~~~e~a~~l~--eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~-~~~IPVI~-G~V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 143 NAREIAPIVV--KAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIG-ELDVPVIA-GGVNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred CHHHHHHHHH--HCCCCEEEEeccchhhhccCCCCCHHHHHHHHH-HCCCCEEE-eCCCCHHHHHHHHHcCCCEEE
Confidence 3455555554 5668999987322 2345555555444 34688875 555667888999999999876
No 374
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.71 E-value=1.4e+02 Score=23.69 Aligned_cols=90 Identities=16% Similarity=0.059 Sum_probs=54.8
Q ss_pred EEEEeCCHHHHHHHHHHHHh----cCC---eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCC
Q 029986 20 VLVVDDDPIWLRILEKMLRK----CLY---EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLP 92 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~----~~~---~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~ 92 (184)
|+|=|.+-...-.+...++. .++ -...+.+.+++.+.+. .++|+|.+|-. +--++.+.+.......
T Consensus 167 vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~---~gaDiI~LDn~----s~e~l~~av~~~~~~~ 239 (281)
T PRK06106 167 VLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALE---LGVDAVLLDNM----TPDTLREAVAIVAGRA 239 (281)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHH---cCCCEEEeCCC----CHHHHHHHHHHhCCCc
Confidence 56666665544445555543 221 2357889999999885 56899999953 2223333222112222
Q ss_pred EEEEEccCChHHHHHHHHcCCCce
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
++-.+..-+.+.+.+..+.|+|.+
T Consensus 240 ~leaSGGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 240 ITEASGRITPETAPAIAASGVDLI 263 (281)
T ss_pred eEEEECCCCHHHHHHHHhcCCCEE
Confidence 366677777888888889998844
No 375
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=47.64 E-value=1.7e+02 Score=24.75 Aligned_cols=98 Identities=12% Similarity=0.110 Sum_probs=54.7
Q ss_pred EeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCC-H---HH---HHHHhcccCCCCEEE
Q 029986 23 VDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD-G---FK---LHEQVGLEMDLPVIM 95 (184)
Q Consensus 23 vdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~-g---~~---l~~~l~~~~~~~iIi 95 (184)
|--|..-.+.|...|.+.||.+... ....|++|++..-=..+ - +. .++.++..+..+|++
T Consensus 10 C~~N~~dse~~~~~l~~~G~~~~~~-------------~~~ADv~iiNTC~v~~~A~~k~~~~~~~~~~~k~~~~~~ivv 76 (455)
T PRK14335 10 CQMNVAESASMEQLLLARGWTKAVD-------------AETCDVLIINTCSVRITAETRVFGRLGLFSSLKKKRAFFIIL 76 (455)
T ss_pred CCCcHHHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccceechHHHHHHHHHHHHHHhhhCCCcEEEE
Confidence 3456677788888998888877531 22379999987432222 1 22 222233334444444
Q ss_pred EEccCChHHHHHHHH-cCCCceEeCCCCHHHHHHHHHHHH
Q 029986 96 MSVDGCTQDVMKGVT-HGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~-~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
...... ..-.+.++ ....|++.-+-....+...+..+.
T Consensus 77 ~GC~a~-~~~~e~~~~~p~vd~v~g~~~~~~~~~~l~~~~ 115 (455)
T PRK14335 77 MGCMAE-RLHDEIQKEFPRIDYVVGTFAHARLESIFQEIE 115 (455)
T ss_pred eccccc-chHHHHHhhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 433322 22223333 344557778888888877766643
No 376
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=47.58 E-value=90 Score=26.90 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=38.7
Q ss_pred CCCccEEEEeCCCCCC-CHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 61 KNGYDIVISDVHMPDM-DGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 61 ~~~~dlvilD~~l~~~-~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
+.+.|+|.+|..-... ..++.+++++.. ++.+|+. .+-.+.+.+..+.++||+...
T Consensus 251 ~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 251 EAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred HCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 4568999999853322 236788888654 5555544 345567888999999999664
No 377
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.56 E-value=69 Score=29.93 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=46.0
Q ss_pred CCccEEEEe-CCCCCCCHHH-HHHHhcccC-CCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 62 NGYDIVISD-VHMPDMDGFK-LHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 62 ~~~dlvilD-~~l~~~~g~~-l~~~l~~~~-~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
..+.|+|+| .++-..+.++ +++.|-.-+ ++.+|+.+ .+...+...+..-+.-|-.+|++.+++...+..+...
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT--Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT--TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC--CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 346799998 4544444444 444443222 33444443 3344555666667788999999999999988887764
No 378
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=47.41 E-value=22 Score=28.63 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=47.7
Q ss_pred CCeEEEECCHHHHHHHHH-hcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCc
Q 029986 41 LYEVTKCNRAEIALDMLR-MSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACN 115 (184)
Q Consensus 41 ~~~v~~~~~~~~~~~~l~-~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~ 115 (184)
.|++- ..+..+++.... ..+.+.|++++- |.+.-+++++.++...++|+..+-.+.+-..++.|.+.|..|
T Consensus 221 tYQmd-p~N~~EAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~~~P~~aYqVSGEYaMikaAa~~G~~d 292 (324)
T PF00490_consen 221 TYQMD-PANRREALREAELDIEEGADILMVK---PALPYLDIIRRVKERFDLPVAAYQVSGEYAMIKAAAQNGWID 292 (324)
T ss_dssp TTSB--TT-HHHHHHHHHHHHHTT-SEEEEE---SSGGGHHHHHHHHHHCTS-EEEEETHHHHHHHHHHHHTTSS-
T ss_pred cccCC-CccHHHHHHHhhhhHhhCCCEEEee---cchhHHHHHHHHHHhcCCCEEEEEehHHHHHHHHHHHCCCcc
Confidence 45554 345666666553 235678999986 456677889999877799999998777777788888877654
No 379
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=47.23 E-value=79 Score=23.56 Aligned_cols=74 Identities=20% Similarity=0.242 Sum_probs=41.0
Q ss_pred eEEEEeCC---------HHHHHHHHHHHH-hcCCeEEEECCHHHHHH-HHHhcCCCccEEEEeCCCCC-CCHHHHHHHhc
Q 029986 19 RVLVVDDD---------PIWLRILEKMLR-KCLYEVTKCNRAEIALD-MLRMSKNGYDIVISDVHMPD-MDGFKLHEQVG 86 (184)
Q Consensus 19 ~Ilivdd~---------~~~~~~l~~~L~-~~~~~v~~~~~~~~~~~-~l~~~~~~~dlvilD~~l~~-~~g~~l~~~l~ 86 (184)
||||+... +.....|..+|+ ..++.+....+....-. .+ ..+|+||+.....+ .+. +..+.+.
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L----~~~Dvvv~~~~~~~~l~~-~~~~al~ 75 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL----KGYDVVVFYNTGGDELTD-EQRAALR 75 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH----CT-SEEEEE-SSCCGS-H-HHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh----cCCCEEEEECCCCCcCCH-HHHHHHH
Confidence 56776655 357778888888 66888887776433222 12 34899999877643 222 2222232
Q ss_pred c--cCCCCEEEEE
Q 029986 87 L--EMDLPVIMMS 97 (184)
Q Consensus 87 ~--~~~~~iIi~~ 97 (184)
. ....+++.+-
T Consensus 76 ~~v~~Ggglv~lH 88 (217)
T PF06283_consen 76 DYVENGGGLVGLH 88 (217)
T ss_dssp HHHHTT-EEEEEG
T ss_pred HHHHcCCCEEEEc
Confidence 1 2456777774
No 380
>PRK04302 triosephosphate isomerase; Provisional
Probab=47.07 E-value=1.2e+02 Score=22.79 Aligned_cols=79 Identities=22% Similarity=0.090 Sum_probs=45.8
Q ss_pred HHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCC--CCCC--------CH-HHHHHHhccc-CCCCEEEEEccCChH
Q 029986 37 LRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVH--MPDM--------DG-FKLHEQVGLE-MDLPVIMMSVDGCTQ 103 (184)
Q Consensus 37 L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~--l~~~--------~g-~~l~~~l~~~-~~~~iIi~~~~~~~~ 103 (184)
..+.|..+. .+.+.++... +. +..+|+|-+.-. +..+ .+ .++++.++.. .+.||+.-.+-.+++
T Consensus 110 a~~~Gl~~I~~v~~~~~~~~-~~--~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e 186 (223)
T PRK04302 110 AKKLGLESVVCVNNPETSAA-AA--ALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGE 186 (223)
T ss_pred HHHCCCeEEEEcCCHHHHHH-Hh--cCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHH
Confidence 334576544 4444444443 33 445787765432 1110 11 2344555542 467888776666788
Q ss_pred HHHHHHHcCCCceEe
Q 029986 104 DVMKGVTHGACNYLL 118 (184)
Q Consensus 104 ~~~~a~~~ga~~~l~ 118 (184)
.+..+...|+++++.
T Consensus 187 ~~~~~~~~gadGvlV 201 (223)
T PRK04302 187 DVKAALELGADGVLL 201 (223)
T ss_pred HHHHHHcCCCCEEEE
Confidence 888899999999974
No 381
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=46.99 E-value=1.7e+02 Score=24.32 Aligned_cols=77 Identities=14% Similarity=0.066 Sum_probs=49.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCe-E-EEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHH-hcccCCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYE-V-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQ-VGLEMDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~-v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~-l~~~~~~~iI 94 (184)
.+|..+|-++...+.++.-++..+.. + ....+.... +.. ...+|+|++|- + +.+..++.. +.....-.++
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~---l~~-~~~fD~V~lDP--~-Gs~~~~l~~al~~~~~~gil 154 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL---LHE-ERKFDVVDIDP--F-GSPAPFLDSAIRSVKRGGLL 154 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH---Hhh-cCCCCEEEECC--C-CCcHHHHHHHHHHhcCCCEE
Confidence 36999999999999999888765543 2 233344333 321 24599999985 3 455667666 5443445677
Q ss_pred EEEccCC
Q 029986 95 MMSVDGC 101 (184)
Q Consensus 95 i~~~~~~ 101 (184)
.+|..+.
T Consensus 155 yvSAtD~ 161 (382)
T PRK04338 155 CVTATDT 161 (382)
T ss_pred EEEecCc
Confidence 7775443
No 382
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=46.88 E-value=83 Score=20.82 Aligned_cols=27 Identities=19% Similarity=0.032 Sum_probs=16.5
Q ss_pred EEeCCHHHHHHHHHHHHhcCCeEEEEC
Q 029986 22 VVDDDPIWLRILEKMLRKCLYEVTKCN 48 (184)
Q Consensus 22 ivdd~~~~~~~l~~~L~~~~~~v~~~~ 48 (184)
+-|.+......+...|...||.+....
T Consensus 6 v~d~~K~~~~~~a~~l~~~G~~i~AT~ 32 (112)
T cd00532 6 VSDHVKAMLVDLAPKLSSDGFPLFATG 32 (112)
T ss_pred EEcccHHHHHHHHHHHHHCCCEEEECc
Confidence 344455555666667777788776443
No 383
>PRK00811 spermidine synthase; Provisional
Probab=46.82 E-value=1.4e+02 Score=23.45 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=37.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC------CeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCL------YEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~------~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~ 75 (184)
.-+|.+||=++...+..++.+...+ -.+ ....++...+.. ....+|+||+|..-|.
T Consensus 100 ~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 100 VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDPV 162 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCCC
Confidence 4589999999999999888886421 122 235555544432 2456999999986553
No 384
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=46.78 E-value=1.4e+02 Score=23.49 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=66.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC--CeEEEEC--CHHHHHHHHHhcCCCccEEEEeCCCC-----CCCHHHHHHHhcc
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCL--YEVTKCN--RAEIALDMLRMSKNGYDIVISDVHMP-----DMDGFKLHEQVGL 87 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~--~~v~~~~--~~~~~~~~l~~~~~~~dlvilD~~l~-----~~~g~~l~~~l~~ 87 (184)
..+++++.+.+.. +.+....+..| ..+.... +.++..+++. . .|++++-.... .+-|..+++.+.
T Consensus 219 ~~~l~ivG~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~--~--ad~~v~ps~~~~~~~~E~~~~~~~EA~a- 292 (367)
T cd05844 219 EVRLVIIGDGPLL-AALEALARALGLGGRVTFLGAQPHAEVRELMR--R--ARIFLQPSVTAPSGDAEGLPVVLLEAQA- 292 (367)
T ss_pred CeEEEEEeCchHH-HHHHHHHHHcCCCCeEEECCCCCHHHHHHHHH--h--CCEEEECcccCCCCCccCCchHHHHHHH-
Confidence 5678888776533 45566666543 2343333 2345555554 2 57777643321 223566777663
Q ss_pred cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 88 EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 88 ~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
..+|||.-... ...+.+..|..+++..|-+.+++.+.+..++..
T Consensus 293 -~G~PvI~s~~~----~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 293 -SGVPVVATRHG----GIPEAVEDGETGLLVPEGDVAALAAALGRLLAD 336 (367)
T ss_pred -cCCCEEEeCCC----CchhheecCCeeEEECCCCHHHHHHHHHHHHcC
Confidence 46788754322 234445667788999999999999999888663
No 385
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.77 E-value=1.1e+02 Score=24.26 Aligned_cols=37 Identities=8% Similarity=0.113 Sum_probs=32.1
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
..-.+.+.+..+.++|+|-..+-..+++++.+++..+
T Consensus 187 VEv~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~ 223 (273)
T PRK05848 187 IECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYR 223 (273)
T ss_pred EEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 3556789999999999998888999999999999864
No 386
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.65 E-value=64 Score=25.59 Aligned_cols=55 Identities=29% Similarity=0.276 Sum_probs=41.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHH-HHHhcCCCccEEEEeCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALD-MLRMSKNGYDIVISDVHMP 74 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~-~l~~~~~~~dlvilD~~l~ 74 (184)
.+.+|.|++.....-..|..+|...+..|..+.+....+. .++ ..|++|.-+.-+
T Consensus 151 ~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~----~ADIvI~Avgk~ 206 (279)
T PRK14178 151 AGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELR----QADILVSAAGKA 206 (279)
T ss_pred CCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHh----hCCEEEECCCcc
Confidence 4678999999999999999999988888876665444333 333 379999987433
No 387
>PLN02727 NAD kinase
Probab=46.47 E-value=2.6e+02 Score=26.39 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=60.6
Q ss_pred CCeEEEEeCCHH-HH---HHHHHHHHhc-CCeEEEECCHHHHHHHH--------------HhcCCCccEEEEeCCCCCCC
Q 029986 17 GLRVLVVDDDPI-WL---RILEKMLRKC-LYEVTKCNRAEIALDML--------------RMSKNGYDIVISDVHMPDMD 77 (184)
Q Consensus 17 ~~~Ilivdd~~~-~~---~~l~~~L~~~-~~~v~~~~~~~~~~~~l--------------~~~~~~~dlvilD~~l~~~~ 77 (184)
..+|+||..... .. ..+..+|... |+++..-.+..+.+... ......+|+||+ -++|
T Consensus 678 ~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIv----LGGD 753 (986)
T PLN02727 678 PKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVAC----LGGD 753 (986)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEE----ECCc
Confidence 347888875433 22 2345666654 77777554443322100 000123677776 3677
Q ss_pred HHHHHHHhcc--cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 78 GFKLHEQVGL--EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 78 g~~l~~~l~~--~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
| .+++..+. ...+||+-+ ..|-.+|+. ++..+++...+..++.+..
T Consensus 754 G-TlLrAar~~~~~~iPILGI-------------NlGrLGFLT-di~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 754 G-VILHASNLFRGAVPPVVSF-------------NLGSLGFLT-SHYFEDFRQDLRQVIHGNN 801 (986)
T ss_pred H-HHHHHHHHhcCCCCCEEEE-------------eCCCccccc-cCCHHHHHHHHHHHHcCCc
Confidence 7 34443332 245777755 357778888 6888999999999988764
No 388
>PRK13695 putative NTPase; Provisional
Probab=46.30 E-value=1.1e+02 Score=21.86 Aligned_cols=71 Identities=20% Similarity=0.176 Sum_probs=36.3
Q ss_pred CCccEEEEeCC--CCCCCHHHHHHHhc--ccCCCCEEEEEccCChHHHHHHHHcCCCc--eEeCCCCHHHHHHHHHHH
Q 029986 62 NGYDIVISDVH--MPDMDGFKLHEQVG--LEMDLPVIMMSVDGCTQDVMKGVTHGACN--YLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 62 ~~~dlvilD~~--l~~~~g~~l~~~l~--~~~~~~iIi~~~~~~~~~~~~a~~~ga~~--~l~kP~~~~~l~~~l~~~ 133 (184)
..++++++|-- +...+ -.+.+.+. .....|+|+++.........+-+..-.+. |-..|-+.+++...+...
T Consensus 95 ~~~~~lllDE~~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 95 EEADVIIIDEIGKMELKS-PKFVKAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNR 171 (174)
T ss_pred CCCCEEEEECCCcchhhh-HHHHHHHHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHH
Confidence 35899999962 22222 22333332 13467888887654333323323332222 335566777776665543
No 389
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=45.96 E-value=89 Score=23.99 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=49.4
Q ss_pred ECCHHHHHHHHHhcCCCc-cEEEEeCCCC---CCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 47 CNRAEIALDMLRMSKNGY-DIVISDVHMP---DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~-dlvilD~~l~---~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
..+..+..+.+.. .+. .+.+.|+.-. ....+++++++++..++|+++-..-.+.+.+.+++..|++..+.-
T Consensus 29 ~~d~~~~a~~~~~--~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viig 103 (253)
T PRK02083 29 AGDPVELAKRYNE--EGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSIN 103 (253)
T ss_pred cCCHHHHHHHHHH--cCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3466666666542 223 5667787643 233467888886666789998888888899999999999887654
No 390
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=45.96 E-value=1.6e+02 Score=23.69 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=46.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCC-eEEEE-----CCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLY-EVTKC-----NRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDL 91 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~-~v~~~-----~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~ 91 (184)
-|++||-|... .+.+...|+..+. .+..+ .+.++..+.+.... .+|+||- +.++.-.++.+.+.....+
T Consensus 26 ~r~livtd~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~d~iIa---iGGGsv~D~aK~vA~~~~~ 100 (331)
T cd08174 26 GRVAVVSGPGV-GEQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIP-NVDAVVG---IGGGKVIDVAKYAAFLRGI 100 (331)
T ss_pred CceEEEECCcH-HHHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhcc-CCCEEEE---eCCcHHHHHHHHHHhhcCC
Confidence 46888887665 5566777765543 33332 34555666655322 5788773 4577778888777545567
Q ss_pred CEEEEE
Q 029986 92 PVIMMS 97 (184)
Q Consensus 92 ~iIi~~ 97 (184)
|+|.+.
T Consensus 101 p~i~vP 106 (331)
T cd08174 101 PLSVPT 106 (331)
T ss_pred CEEEec
Confidence 776664
No 391
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=45.80 E-value=84 Score=20.57 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=17.8
Q ss_pred EEeCCHHHHHHHHHHHHhcCCeEEEEC
Q 029986 22 VVDDDPIWLRILEKMLRKCLYEVTKCN 48 (184)
Q Consensus 22 ivdd~~~~~~~l~~~L~~~~~~v~~~~ 48 (184)
+-|.+......+...|.+.||.+....
T Consensus 7 ~~~~~k~~~~~~~~~l~~~G~~l~aT~ 33 (110)
T cd01424 7 VADRDKPEAVEIAKRLAELGFKLVATE 33 (110)
T ss_pred EEcCcHhHHHHHHHHHHHCCCEEEEch
Confidence 344555566667777777888886543
No 392
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=45.76 E-value=1.6e+02 Score=24.05 Aligned_cols=80 Identities=15% Similarity=0.076 Sum_probs=51.5
Q ss_pred CCCeEEEEeCCHHHHH--HHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC--CCCCC-----CHHHHHHHhc
Q 029986 16 AGLRVLVVDDDPIWLR--ILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV--HMPDM-----DGFKLHEQVG 86 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~--~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~--~l~~~-----~g~~l~~~l~ 86 (184)
...+|++.|..|...- .....|.+.|..+....+..-+.-+ . ....|.||+.. -+.++ -|--.+..+.
T Consensus 169 k~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M-~--~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~A 245 (329)
T PRK06371 169 KNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIADNAAGYFM-R--KKEIDLVIVGADRIASNGDFANKIGTYEKAVLA 245 (329)
T ss_pred CeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEcccHHHHHh-h--hcCCCEEEECccEEecCCCEeehhhHHHHHHHH
Confidence 4568888888886443 2367788889988877765444433 2 24589999844 33333 2444455555
Q ss_pred ccCCCCEEEEEc
Q 029986 87 LEMDLPVIMMSV 98 (184)
Q Consensus 87 ~~~~~~iIi~~~ 98 (184)
+..++|+++.+.
T Consensus 246 k~~~VPfyV~a~ 257 (329)
T PRK06371 246 KVNGIPFYVAAP 257 (329)
T ss_pred HHcCCCEEEecc
Confidence 567899998865
No 393
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=45.72 E-value=1.7e+02 Score=24.18 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=47.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCe-EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHh-cccCCCCEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQV-GLEMDLPVIM 95 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l-~~~~~~~iIi 95 (184)
-+|+.+|-++...+.++.-++..+.. +.... .++...+......+|+|++|- .+ ....++... +...+-.++.
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~--~Da~~~l~~~~~~fDvIdlDP--fG-s~~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPN--EDAANVLRYRNRKFHVIDIDP--FG-TPAPFVDSAIQASAERGLLL 144 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEc--hhHHHHHHHhCCCCCEEEeCC--CC-CcHHHHHHHHHhcccCCEEE
Confidence 46999999999999999888766543 32222 233333332234599999987 33 333455544 2223345777
Q ss_pred EEccCCh
Q 029986 96 MSVDGCT 102 (184)
Q Consensus 96 ~~~~~~~ 102 (184)
+|..+..
T Consensus 145 vTaTD~~ 151 (374)
T TIGR00308 145 VTATDTS 151 (374)
T ss_pred EEecccH
Confidence 7654433
No 394
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.71 E-value=51 Score=26.15 Aligned_cols=58 Identities=26% Similarity=0.268 Sum_probs=44.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~ 76 (184)
.+.+|+|+......-.-+..+|.+.+.+|..+++....+...- ...|+++.-..-|+.
T Consensus 156 ~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~---~~ADIvV~AvGkp~~ 213 (281)
T PRK14183 156 KGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHT---KKADIVIVGVGKPNL 213 (281)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHH---hhCCEEEEecCcccc
Confidence 4779999999999999999999988888887776544333321 237999998866654
No 395
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=45.63 E-value=1.2e+02 Score=24.50 Aligned_cols=82 Identities=23% Similarity=0.252 Sum_probs=52.5
Q ss_pred CCeEEEEeCCHHHH-HHHHHHHHhcCCeEEEECCHHHHHHHHHhcCC--CccEEEEeCCCCCCCHHHHHHHhcccCCCCE
Q 029986 17 GLRVLVVDDDPIWL-RILEKMLRKCLYEVTKCNRAEIALDMLRMSKN--GYDIVISDVHMPDMDGFKLHEQVGLEMDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~-~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~--~~dlvilD~~l~~~~g~~l~~~l~~~~~~~i 93 (184)
..+|+|.|.-|... ..+..-|.+.|.+.....+..-+--+=+..+- +-..++.+-.+-...|...+....+.+.+|+
T Consensus 188 kf~viVaE~~p~~qgH~~Ak~la~~giettVI~daaVfA~MsrVnKVIigt~avl~NGgl~~~~G~~~vAlaAk~h~vPv 267 (353)
T KOG1465|consen 188 KFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAAVFAMMSRVNKVIIGTHAVLANGGLRAPSGVHTVALAAKHHSVPV 267 (353)
T ss_pred ceEEEEeecCCcccchHhhHHHHHcCCeeEEeccHHHHHHhhhcceEEEEeeeEecCCCeeccchHHHHHHHHHhcCCcE
Confidence 45688888877776 77777787888888878765544433221110 0133344444444568777777766678999
Q ss_pred EEEEc
Q 029986 94 IMMSV 98 (184)
Q Consensus 94 Ii~~~ 98 (184)
++++.
T Consensus 268 ~VlAp 272 (353)
T KOG1465|consen 268 IVLAP 272 (353)
T ss_pred EEecc
Confidence 99874
No 396
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=45.43 E-value=1.6e+02 Score=24.61 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=37.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCe---E-EEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYE---V-TKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~---v-~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
-+|.-+|-++...+...+-+...++. + ....+..+.+..+......+|+||+|-
T Consensus 244 ~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP 301 (396)
T PRK15128 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence 37999999999999988888876652 2 234566555544332234699999985
No 397
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=45.23 E-value=85 Score=20.43 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=46.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEcc
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVD 99 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~ 99 (184)
+++.-.|......|..+|+..|.+|..+.. +. ...-|++|.|-..... .+....|.++..
T Consensus 2 cwL~irNa~Le~yL~~lL~~~G~~v~~y~~-q~--------~~~~DvlItD~~~~~~-----------~~~~a~I~~s~~ 61 (92)
T PF09456_consen 2 CWLAIRNAYLESYLQRLLSYHGFQVQRYEG-QQ--------PDADDVLITDYEPQVA-----------WPGRAVIRFSRR 61 (92)
T ss_dssp EEEE---HHHHHHHHHHHCTTTEEEEE-SS-------------TT-EEEEESS-S---------------SSEEEEEESS
T ss_pred EEEEehhHHHHHHHHHHHHHCCcEEEEecC-CC--------CCCCcEEEECCCcccC-----------CcceEEEEEchH
Confidence 556667888888889999999999988862 11 1236999999753321 122235555432
Q ss_pred CChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 100 GCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 100 ~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
+...+.+.....-+.....+.+|...+.++
T Consensus 62 ----hiG~p~E~~pg~Wl~sTat~~eL~~LL~rI 91 (92)
T PF09456_consen 62 ----HIGPPQERRPGYWLHSTATPHELPALLDRI 91 (92)
T ss_dssp -----SSS--TTSTTEEEEESS-TTHHHHHHHHH
T ss_pred ----hCCCccccCCCcEEeccCCHHHHHHHHHHh
Confidence 222233333444455566667777666654
No 398
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=45.23 E-value=45 Score=25.45 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=46.2
Q ss_pred CCCeEEEEeC-CHHHHHHHHHHHHhcCCeEE---EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHH
Q 029986 16 AGLRVLVVDD-DPIWLRILEKMLRKCLYEVT---KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF 79 (184)
Q Consensus 16 ~~~~Ilivdd-~~~~~~~l~~~L~~~~~~v~---~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~ 79 (184)
...+|=.|.. .......|...|.+.|+.+. .+++...+..++...+-.|-+++-|-.+++.+|+
T Consensus 38 ~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gi 105 (262)
T KOG3040|consen 38 QHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGI 105 (262)
T ss_pred cCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCc
Confidence 3455655554 44566778899999998875 5667778888887666778888888777776664
No 399
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=45.21 E-value=1.1e+02 Score=23.10 Aligned_cols=50 Identities=18% Similarity=0.409 Sum_probs=34.6
Q ss_pred CCCccEEEEeCCC---CCCCH----HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCC
Q 029986 61 KNGYDIVISDVHM---PDMDG----FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGA 113 (184)
Q Consensus 61 ~~~~dlvilD~~l---~~~~g----~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga 113 (184)
....|.+++|..- ++++| ++++... ....| ++++..-+++.+.+|++.+.
T Consensus 120 ~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~~~~-~~LAGGL~p~NV~~ai~~~~ 176 (208)
T COG0135 120 EGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RLSKP-VMLAGGLNPDNVAEAIALGP 176 (208)
T ss_pred cCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cccCC-EEEECCCCHHHHHHHHHhcC
Confidence 4558999999974 45665 3333333 13344 67788889999999998877
No 400
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.02 E-value=1.2e+02 Score=22.22 Aligned_cols=64 Identities=13% Similarity=0.049 Sum_probs=45.9
Q ss_pred ECCHHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 47 CNRAEIALDMLRMSKNGYDIVISDVHMPDM--DGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~dlvilD~~l~~~--~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
+.+..++..... .++|.+-+ .|.. -|.+.++.++.. +++|++.+.. -+.+.+..++++|++..-
T Consensus 112 ~~t~~e~~~A~~---~Gadyv~~---Fpt~~~~G~~~l~~~~~~~~~ipvvaiGG-I~~~n~~~~l~aGa~~va 178 (187)
T PRK07455 112 ALTPTEIVTAWQ---AGASCVKV---FPVQAVGGADYIKSLQGPLGHIPLIPTGG-VTLENAQAFIQAGAIAVG 178 (187)
T ss_pred cCCHHHHHHHHH---CCCCEEEE---CcCCcccCHHHHHHHHhhCCCCcEEEeCC-CCHHHHHHHHHCCCeEEE
Confidence 677777776654 45788866 4443 378889988643 4689887744 467888899999998763
No 401
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=44.93 E-value=1.4e+02 Score=22.87 Aligned_cols=89 Identities=9% Similarity=-0.032 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCeEEEECCH---HHHHHHHHhcCCCccEEEEeCCCCCCC------HHHHHHHhccc-CCCCEEEEEc
Q 029986 29 WLRILEKMLRKCLYEVTKCNRA---EIALDMLRMSKNGYDIVISDVHMPDMD------GFKLHEQVGLE-MDLPVIMMSV 98 (184)
Q Consensus 29 ~~~~l~~~L~~~~~~v~~~~~~---~~~~~~l~~~~~~~dlvilD~~l~~~~------g~~l~~~l~~~-~~~~iIi~~~ 98 (184)
....+...+++.|.....+-+. .+.++.+. +....++++ ...|+.. ..+.++++++. +..||++=..
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~--~~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gG 193 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLS--KLSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFG 193 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH--HhCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 4445666677777654432222 23333332 234577777 4444421 13345555433 2456443222
Q ss_pred cCChHHHHHHHHcCCCceEeCC
Q 029986 99 DGCTQDVMKGVTHGACNYLLKP 120 (184)
Q Consensus 99 ~~~~~~~~~a~~~ga~~~l~kP 120 (184)
-.+.+.+..+.++||++++.--
T Consensus 194 I~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 194 LDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred cCCHHHHHHHHHcCCCEEEECH
Confidence 3367788888899999998653
No 402
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=44.84 E-value=1.7e+02 Score=23.94 Aligned_cols=63 Identities=16% Similarity=0.273 Sum_probs=39.5
Q ss_pred CeEEEEeCCHHH----HHHHHHHHHhcCCeEEEECC---------HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHH
Q 029986 18 LRVLVVDDDPIW----LRILEKMLRKCLYEVTKCNR---------AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQ 84 (184)
Q Consensus 18 ~~Ilivdd~~~~----~~~l~~~L~~~~~~v~~~~~---------~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~ 84 (184)
-+++|+.|.... .+.+...|+..|..+..+.. .+.+.+.++ ...+|+||- +.+++-++..+.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~--~~~~D~IIa---vGGGS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFK--KEGCDFIIS---IGGGSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHH--hcCCCEEEE---eCCcHHHHHHHH
Confidence 378888776543 34577778776766665543 344555555 456898874 346666776665
Q ss_pred h
Q 029986 85 V 85 (184)
Q Consensus 85 l 85 (184)
+
T Consensus 104 i 104 (377)
T cd08176 104 I 104 (377)
T ss_pred H
Confidence 4
No 403
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=44.83 E-value=1.3e+02 Score=22.47 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=35.4
Q ss_pred CCCccEEEEeCCC---CC-CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCce
Q 029986 61 KNGYDIVISDVHM---PD-MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 61 ~~~~dlvilD~~l---~~-~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
+.+.|+|++|..+ |. ..-.++++.++..+.++++. ...+.+.+..+.+.|++.+
T Consensus 86 ~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~--~v~t~ee~~~a~~~G~d~i 143 (221)
T PRK01130 86 AAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMA--DCSTLEEGLAAQKLGFDFI 143 (221)
T ss_pred HcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHHHcCCCEE
Confidence 3558999999865 32 45556777775434455443 3445677888999998744
No 404
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=44.54 E-value=1.4e+02 Score=22.79 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHh-cccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPD-MDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~-~~g~~l~~~l-~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+..++++.+... .-.+++.|+.--+ +.|++ .+ +...+.|+|.-..-.+.+....+.+.|+++.+.
T Consensus 144 ~~~~~~~~~~~~--~~~ii~t~i~~dGt~~G~d---~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 144 KVEDAYEMLKNY--VNRFIYTSIERDGTLTGIE---EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CHHHHHHHHHHH--hCEEEEEeccchhcccCHH---HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 345555555432 2368888886554 36766 33 222578998887778888898999999998764
No 405
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=44.53 E-value=51 Score=26.15 Aligned_cols=59 Identities=27% Similarity=0.309 Sum_probs=45.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC
Q 029986 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76 (184)
Q Consensus 15 ~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~ 76 (184)
..+.++.||......=.-|..+|...+++|..|++....+...- ...|+++.-+.-|+.
T Consensus 154 l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~~---k~ADIvv~AvG~p~~ 212 (283)
T COG0190 154 LRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASIT---KNADIVVVAVGKPHF 212 (283)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHHh---hhCCEEEEecCCccc
Confidence 35789999999999999999999999999998887654443332 236999998876653
No 406
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=44.47 E-value=1.4e+02 Score=22.90 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHhcCCCccEEEEeCCCCC---CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 48 NRAEIALDMLRMSKNGYDIVISDVHMPD---MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 48 ~~~~~~~~~l~~~~~~~dlvilD~~l~~---~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
.+..+..+.+.. ..--.+.++|+.-.. ...+++++++.....+|+++-..-.+.+.+.+++..|++..++-
T Consensus 30 ~dp~~~a~~~~~-~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 30 GDPVELAQRYDE-EGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCHHHHHHHHHH-cCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 466666666653 122357777886543 23456777776556789998888888999999999999887653
No 407
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=44.30 E-value=1.4e+02 Score=22.52 Aligned_cols=80 Identities=21% Similarity=0.126 Sum_probs=47.0
Q ss_pred HHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEE--EeC-CCCCCCHHHHHHHhcc---cCCCC-EEEEEccCChHHHH
Q 029986 36 MLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVI--SDV-HMPDMDGFKLHEQVGL---EMDLP-VIMMSVDGCTQDVM 106 (184)
Q Consensus 36 ~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvi--lD~-~l~~~~g~~l~~~l~~---~~~~~-iIi~~~~~~~~~~~ 106 (184)
.|+..|. .+..+.+..++...... +++.|= ++- .-.+.+|+++++.+.. ..+.+ =|+.++-.+...+.
T Consensus 96 ~L~~~gi~v~~T~V~s~~Qa~~Aa~A---GA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~ 172 (211)
T cd00956 96 KLSEEGIKTNVTAIFSAAQALLAAKA---GATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVI 172 (211)
T ss_pred HHHHcCCceeeEEecCHHHHHHHHHc---CCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHH
Confidence 3444443 34456677777776653 234321 111 1125689998887732 22222 34456777889999
Q ss_pred HHHHcCCCceEe
Q 029986 107 KGVTHGACNYLL 118 (184)
Q Consensus 107 ~a~~~ga~~~l~ 118 (184)
.+..+|++.+=.
T Consensus 173 ~a~~~Gad~vTv 184 (211)
T cd00956 173 EAALAGADAITL 184 (211)
T ss_pred HHHHcCCCEEEe
Confidence 999999995543
No 408
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=44.19 E-value=1.9e+02 Score=24.29 Aligned_cols=102 Identities=14% Similarity=0.058 Sum_probs=60.2
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCH----H---HHHHHhcc-cCCCC
Q 029986 21 LVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG----F---KLHEQVGL-EMDLP 92 (184)
Q Consensus 21 livdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g----~---~l~~~l~~-~~~~~ 92 (184)
+=|--|..-.+.|...|...||.+... ...+|+++++..--.... . ..+++++. .+..+
T Consensus 9 ~GC~~N~~ds~~~~~~l~~~G~~~~~~-------------~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~~~ 75 (439)
T PRK14328 9 YGCQMNEEDSEKLAGMLKSMGYERTEN-------------REEADIIIFNTCCVRENAENKVFGNLGELKKLKEKNPNLI 75 (439)
T ss_pred eCCCCCHHHHHHHHHHHHHCcCEECCC-------------cCcCCEEEEecccEechHHHHHHHHHHHHHHHHhhCCCCE
Confidence 335567778888999998889887532 234799999885443322 2 22333332 34455
Q ss_pred EEEEEccCChH-HHHHHH-HcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 93 VIMMSVDGCTQ-DVMKGV-THGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 93 iIi~~~~~~~~-~~~~a~-~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
||+........ ...... ...-.|++..+-....+...+..+..
T Consensus 76 vvv~GC~a~~~~~~~~~~~~~~~vd~v~~~~~~~~i~~~~~~~~~ 120 (439)
T PRK14328 76 IGVCGCMMQQKGMAEKIKKKFPFVDIIFGTHNIHKFPEYLNRVKE 120 (439)
T ss_pred EEEECchhcccccHHHHHhhCCCceEEECCCCHHHHHHHHHHHhc
Confidence 55544333221 122222 34345588888888888888887654
No 409
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=44.04 E-value=2e+02 Score=24.39 Aligned_cols=99 Identities=21% Similarity=0.234 Sum_probs=57.7
Q ss_pred CCeEEEEeC---CHHHHHHHHHHHHhc--CCe--EEEECCHHHHHHHHHhcCCCccEEEEeCCCC--------CC---CH
Q 029986 17 GLRVLVVDD---DPIWLRILEKMLRKC--LYE--VTKCNRAEIALDMLRMSKNGYDIVISDVHMP--------DM---DG 78 (184)
Q Consensus 17 ~~~Ilivdd---~~~~~~~l~~~L~~~--~~~--v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~--------~~---~g 78 (184)
+..++.+|- +.......-+.+++. ... +..+.+.+++..++. .+.|.|-+-+.-. .. -.
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~---aGad~i~vg~g~G~~~~t~~~~~~g~p~ 312 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALID---AGADGLRVGIGPGSICTTRIVAGVGVPQ 312 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH---hCCCEEEECCCCCcCCccceecCCCccH
Confidence 466777876 444333333344433 223 225667787777765 4578776543111 00 11
Q ss_pred HHHHHHhc---ccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 79 FKLHEQVG---LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 79 ~~l~~~l~---~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+..+..+. ...++|||.=..-.+...+.+|+.+||+....
T Consensus 313 ~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 313 ITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVML 355 (450)
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 23333332 22467877766777899999999999998764
No 410
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=44.03 E-value=1.3e+02 Score=22.22 Aligned_cols=89 Identities=11% Similarity=0.091 Sum_probs=53.2
Q ss_pred HHHHHHHhcCCeEEE--ECCHHHHHHHHHhcCCCccEEEEeCCCCC-----CCHHHHHHHhc---ccCCCCEEEEEccCC
Q 029986 32 ILEKMLRKCLYEVTK--CNRAEIALDMLRMSKNGYDIVISDVHMPD-----MDGFKLHEQVG---LEMDLPVIMMSVDGC 101 (184)
Q Consensus 32 ~l~~~L~~~~~~v~~--~~~~~~~~~~l~~~~~~~dlvilD~~l~~-----~~g~~l~~~l~---~~~~~~iIi~~~~~~ 101 (184)
.....|++.|+.+.. +..+...+..+. ...||.|=+|..+.. .....+++.+. +..++++|+- .-.+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~--~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~-gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLK--RLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE-GVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHH--hCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe-cCCC
Confidence 344566777887764 445555666665 456999999975432 11334455442 2335555544 4456
Q ss_pred hHHHHHHHHcCCC---c-eEeCCCCH
Q 029986 102 TQDVMKGVTHGAC---N-YLLKPIRI 123 (184)
Q Consensus 102 ~~~~~~a~~~ga~---~-~l~kP~~~ 123 (184)
.+....+.+.|++ | |+.||...
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCC
Confidence 7777788888885 2 35677653
No 411
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=44.00 E-value=1.6e+02 Score=23.39 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=41.1
Q ss_pred HHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 79 ~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
-+.+++.|.. ++.+-|=+ .-.+.+.+.+|+++|+|-.++-.++++++.+++..+
T Consensus 175 ~~Av~~aR~~~~~~~kIEV-Evesle~~~eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 175 TEAVRRARAAAPFTKKIEV-EVESLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred HHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 3355555543 45553444 446789999999999999999999999999999985
No 412
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=43.87 E-value=2.3e+02 Score=25.00 Aligned_cols=99 Identities=12% Similarity=0.006 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCeEE--EECCHHHHHHHHHhcC---CCccEEEEeCCCC---CCC--HHHHHHHhcccCCCCEEEEEc
Q 029986 29 WLRILEKMLRKCLYEVT--KCNRAEIALDMLRMSK---NGYDIVISDVHMP---DMD--GFKLHEQVGLEMDLPVIMMSV 98 (184)
Q Consensus 29 ~~~~l~~~L~~~~~~v~--~~~~~~~~~~~l~~~~---~~~dlvilD~~l~---~~~--g~~l~~~l~~~~~~~iIi~~~ 98 (184)
....+...|++.|+.+. .+..+-..+..+. . -+||.|=+|-.+- ..+ -...+..+.+..++.+|+- .
T Consensus 540 ~~~~~~~~l~~~G~~ialDdfG~g~ss~~~L~--~~~~l~~d~iKid~~~~~~~~~~~~~~~~i~~~a~~l~~~viae-g 616 (660)
T PRK11829 540 EALRLLRELQGLGLLIALDDFGIGYSSLRYLN--HLKSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMAE-G 616 (660)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCchhhHHHHh--ccCCCCCcEEEECHHHHhcccCCHHHHHHHHHHHHHcCCeEEEe-c
Confidence 34445566778888766 4667777777776 5 6699999985322 112 1222333333345555544 3
Q ss_pred cCChHHHHHHHHcCCC----ceEeCCCCHHHHHHHH
Q 029986 99 DGCTQDVMKGVTHGAC----NYLLKPIRIKELRNIW 130 (184)
Q Consensus 99 ~~~~~~~~~a~~~ga~----~~l~kP~~~~~l~~~l 130 (184)
=.+.+....+.+.|++ .|+.||.+..++...+
T Consensus 617 VEt~~~~~~l~~~g~d~~QGy~~~~P~~~~~~~~~~ 652 (660)
T PRK11829 617 VETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY 652 (660)
T ss_pred CCCHHHHHHHHHcCCCEEecCcccCCCCHHHHHHHh
Confidence 3456667777888884 3578999988886554
No 413
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.84 E-value=1.4e+02 Score=23.36 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCCccEEEEe-CC----CCCC--CHHHHHHHhcccCCCCEEE-EEccCCh-----HHHHHHHHcCCCce
Q 029986 50 AEIALDMLRMSKNGYDIVISD-VH----MPDM--DGFKLHEQVGLEMDLPVIM-MSVDGCT-----QDVMKGVTHGACNY 116 (184)
Q Consensus 50 ~~~~~~~l~~~~~~~dlvilD-~~----l~~~--~g~~l~~~l~~~~~~~iIi-~~~~~~~-----~~~~~a~~~ga~~~ 116 (184)
...+.+.+... ...+++++. .. .+.. -.+..+..+++..++|||+ .|..... .....|...||++.
T Consensus 138 ~~~A~e~i~~~-Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl 216 (250)
T PRK13397 138 YLGALSYLQDT-GKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGI 216 (250)
T ss_pred HHHHHHHHHHc-CCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhCCCEE
Confidence 34455555532 336899997 21 1111 1122334444445789888 5543332 56778899999977
Q ss_pred E
Q 029986 117 L 117 (184)
Q Consensus 117 l 117 (184)
+
T Consensus 217 ~ 217 (250)
T PRK13397 217 M 217 (250)
T ss_pred E
Confidence 6
No 414
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=43.71 E-value=91 Score=24.50 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=41.1
Q ss_pred HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE------eCCCCHHHHHHHHHHHHcC
Q 029986 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL------LKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 79 ~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l------~kP~~~~~l~~~l~~~~~~ 136 (184)
+++++.++...++|||....-.+.+.+.+++.+||+..- .-|.-..++.+-+...+.+
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~ 283 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDE 283 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHH
Confidence 466777765557899988887788999999999997552 3455555666656555543
No 415
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=43.69 E-value=1.5e+02 Score=22.81 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=40.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 64 ~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
.|++++-... ++-|..+++.+. ..+|+|+.-... ..+.+.. .+++..+-+.+++.+.+..++..
T Consensus 269 adi~v~ps~~-e~~~~~~~Ea~a--~g~PvI~~~~~~----~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 269 LDVFVLSSLS-EGFPNVLLEAMA--CGLPVVATDVGD----NAELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEEeCCcc-ccCCcHHHHHHh--cCCCEEEcCCCC----hHHHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 5777775544 334556666653 357887532221 2223332 67888898999999999988764
No 416
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=43.57 E-value=95 Score=25.01 Aligned_cols=69 Identities=22% Similarity=0.330 Sum_probs=48.2
Q ss_pred CeEEEECCHHHHHHHHH-hcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCC
Q 029986 42 YEVTKCNRAEIALDMLR-MSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGAC 114 (184)
Q Consensus 42 ~~v~~~~~~~~~~~~l~-~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~ 114 (184)
|++-.. +..+++..+. ....+.|++++- |.+.-+++++.++...++|+..+-.+.+-...+.|...|-.
T Consensus 225 YQmDpa-N~~EAlrE~~lD~~EGAD~lMVK---Pal~YLDIi~~vk~~~~lP~~AYqVSGEYaMikAAa~nGwi 294 (330)
T COG0113 225 YQMDPA-NRREALREIELDIEEGADILMVK---PALPYLDIIRRVKEEFNLPVAAYQVSGEYAMIKAAAQNGWI 294 (330)
T ss_pred eccCCc-CHHHHHHHHHhhHhcCCcEEEEc---CCchHHHHHHHHHHhcCCCeEEEecchHHHHHHHHHHcCCc
Confidence 444333 5666666554 235678999885 56667788898887778999998877777777777776654
No 417
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=43.41 E-value=1.8e+02 Score=23.79 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=38.6
Q ss_pred CeEEEEeCCHHH----HHHHHHHHHhcCCeEEEEC---------CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHH
Q 029986 18 LRVLVVDDDPIW----LRILEKMLRKCLYEVTKCN---------RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQ 84 (184)
Q Consensus 18 ~~Ilivdd~~~~----~~~l~~~L~~~~~~v~~~~---------~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~ 84 (184)
-|++||-|.... .+.+...|+..|..+..+. +..++.+.++ ...+|.||- +.+++-++..+-
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~--~~~~D~IIa---iGGGS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAK--EGGCDVIIA---LGGGSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHH--hcCCCEEEE---eCCchHHHHHHH
Confidence 378888876443 3456777777676665543 2344555554 456898774 346666776665
Q ss_pred h
Q 029986 85 V 85 (184)
Q Consensus 85 l 85 (184)
+
T Consensus 99 i 99 (375)
T cd08194 99 I 99 (375)
T ss_pred H
Confidence 5
No 418
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=43.30 E-value=96 Score=24.04 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=49.6
Q ss_pred ECCHHHHHHHHHhcCCCccEEEEeCCCCC---CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 47 CNRAEIALDMLRMSKNGYDIVISDVHMPD---MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~dlvilD~~l~~---~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
..+..+..+.+... .--.++++|+.-.+ ..-+++++++.....+|+++=..-.+.+.+..++..|++..+.-
T Consensus 29 ~~dp~~~a~~~~~~-g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 29 IGDPINAVRIFNEK-EVDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCCHHHHHHHHHHc-CCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 34666666666521 22368888996653 23478888886656788877666677788888999999887653
No 419
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=43.24 E-value=1.6e+02 Score=23.15 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCeEEEECCHHHHHHH----HHhcCCCccEEEEeCCCCCCCHHHHHHHhc--ccCCCCEEEEEccCCh
Q 029986 29 WLRILEKMLRKCLYEVTKCNRAEIALDM----LRMSKNGYDIVISDVHMPDMDGFKLHEQVG--LEMDLPVIMMSVDGCT 102 (184)
Q Consensus 29 ~~~~l~~~L~~~~~~v~~~~~~~~~~~~----l~~~~~~~dlvilD~~l~~~~g~~l~~~l~--~~~~~~iIi~~~~~~~ 102 (184)
....+...+...++.+.......+.+.. .......+|++++. ++||. +++..+ ....+||+-+.
T Consensus 17 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ivvl----GGDGt-lL~~~~~~~~~~~pilgin----- 86 (281)
T COG0061 17 IAKRLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVL----GGDGT-LLRAARLLARLDIPVLGIN----- 86 (281)
T ss_pred HHHHHHHHHHhcCceEEEechhhhhcccccccccccccCceEEEEe----CCcHH-HHHHHHHhccCCCCEEEEe-----
Confidence 3445566666667777766554444431 11112446777774 56663 333332 22356787663
Q ss_pred HHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 103 QDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 103 ~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
.|-.+|+. ++..+++.+.+..+.++
T Consensus 87 --------~G~lGFLt-~~~~~~~~~~~~~~~~~ 111 (281)
T COG0061 87 --------LGHLGFLT-DFEPDELEKALDALLEG 111 (281)
T ss_pred --------CCCccccc-ccCHHHHHHHHHHHhcC
Confidence 46778887 55589999999999883
No 420
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=43.12 E-value=1.6e+02 Score=22.88 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=40.7
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCC--eEE-EECCHHHHHHHHHhc---CCCccEEEEeCC
Q 029986 15 PAGLRVLVVDDDPIWLRILEKMLRKCLY--EVT-KCNRAEIALDMLRMS---KNGYDIVISDVH 72 (184)
Q Consensus 15 ~~~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~~~~~l~~~---~~~~dlvilD~~ 72 (184)
|+.-+|.-+|-++...+.=+..++..|+ .+. ...++.+.+..+... ...+|+||+|..
T Consensus 102 ~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 102 PEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 4455899999999888877788887764 232 455666666655321 246999999986
No 421
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=43.05 E-value=43 Score=24.64 Aligned_cols=73 Identities=11% Similarity=0.042 Sum_probs=43.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEECCH-HHHHHHHHhcCCCccEEEEeCCCCC--CC--HHHHHHHhcccCCCCEE
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRA-EIALDMLRMSKNGYDIVISDVHMPD--MD--GFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~-~~~~~~l~~~~~~~dlvilD~~l~~--~~--g~~l~~~l~~~~~~~iI 94 (184)
|++||........+...|.+.|+.+...... .+. ..+. ...||.+++.-.-.+ .+ ..++++.+ ....|++
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~-~~~~--~~~~~~iilsgGp~~~~~~~~~~~~i~~~--~~~~PiL 76 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDI-DGIE--ALNPTHLVISPGPCTPNEAGISLQAIEHF--AGKLPIL 76 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCH-HHHh--hCCCCEEEEeCCCCChHHCcchHHHHHHh--cCCCCEE
Confidence 8999999988889999999888877655532 122 2222 234777777442111 11 23344443 2467887
Q ss_pred EEE
Q 029986 95 MMS 97 (184)
Q Consensus 95 i~~ 97 (184)
-+.
T Consensus 77 GIC 79 (193)
T PRK08857 77 GVC 79 (193)
T ss_pred EEc
Confidence 663
No 422
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=42.97 E-value=1.8e+02 Score=23.66 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=37.9
Q ss_pred CeEEEEeCCHHHH----HHHHHHHHhcCCeEEEEC------C---HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHH
Q 029986 18 LRVLVVDDDPIWL----RILEKMLRKCLYEVTKCN------R---AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQ 84 (184)
Q Consensus 18 ~~Ilivdd~~~~~----~~l~~~L~~~~~~v~~~~------~---~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~ 84 (184)
-+++|+.|..... +.+...|+..|..+..+. + ..++.+.++ ...+|.||- +.+++-+++.+.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~--~~~~d~Iia---iGGGs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYR--EEGCDGVIA---VGGGSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHH--hcCCCEEEE---eCCchHHHHHHH
Confidence 3788887765433 467777777666555443 2 334444444 455898764 346666776665
Q ss_pred h
Q 029986 85 V 85 (184)
Q Consensus 85 l 85 (184)
+
T Consensus 99 v 99 (370)
T cd08551 99 I 99 (370)
T ss_pred H
Confidence 5
No 423
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=42.93 E-value=1.7e+02 Score=24.55 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCeEEEECC--HHHHHHHHHhcCCCccEEEEeC-CCCCCCH--HHHHHHhcccCCCCEEEEEccCChHHH
Q 029986 31 RILEKMLRKCLYEVTKCNR--AEIALDMLRMSKNGYDIVISDV-HMPDMDG--FKLHEQVGLEMDLPVIMMSVDGCTQDV 105 (184)
Q Consensus 31 ~~l~~~L~~~~~~v~~~~~--~~~~~~~l~~~~~~~dlvilD~-~l~~~~g--~~l~~~l~~~~~~~iIi~~~~~~~~~~ 105 (184)
..+...|++.|.++..+.. .++..+.+. ++ =.+|+++. ..|+.+- ++-+..+.+...+|+|+=.....+ +.
T Consensus 116 ~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~--~n-Tkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atp-yl 191 (426)
T COG2873 116 NLFSHTLKRLGIEVRFVDPDDPENFEAAID--EN-TKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATP-YL 191 (426)
T ss_pred HHHHHHHHhcCcEEEEeCCCCHHHHHHHhC--cc-cceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcc-ee
Confidence 3466678888999887653 444555544 22 35777754 5666653 444556655678888876544444 78
Q ss_pred HHHHHcCCCce
Q 029986 106 MKGVTHGACNY 116 (184)
Q Consensus 106 ~~a~~~ga~~~ 116 (184)
.+-++.||+=.
T Consensus 192 ~rP~~hGADIV 202 (426)
T COG2873 192 CRPIEHGADIV 202 (426)
T ss_pred cchhhcCCCEE
Confidence 88888888733
No 424
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=42.80 E-value=27 Score=25.61 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCce
Q 029986 50 AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 50 ~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
.+.+++.++ +..||.|=+ ||+ ---.++++++..-++|+|.=.--.+.+.+..++++||.+.
T Consensus 106 l~~~~~~i~--~~~PD~vEi---lPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aV 166 (175)
T PF04309_consen 106 LETGIKQIE--QSKPDAVEI---LPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAV 166 (175)
T ss_dssp HHHHHHHHH--HHT-SEEEE---ESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHh--hcCCCEEEE---chH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEE
Confidence 344555555 345896654 566 4456777776555788765444556788889999999865
No 425
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.66 E-value=89 Score=24.84 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=44.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHH-HHHhcCCCccEEEEeCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALD-MLRMSKNGYDIVISDVHMPD 75 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~-~l~~~~~~~dlvilD~~l~~ 75 (184)
.+.+|.|+......=.-+..+|.+.+..|..+++....+. .++ ..|++|.-..-|+
T Consensus 157 ~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~~~~----~ADIvI~AvG~p~ 213 (284)
T PRK14190 157 SGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTK----QADILIVAVGKPK 213 (284)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHHHHH----hCCEEEEecCCCC
Confidence 5779999999999999999999988888887766544443 333 3699999886555
No 426
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.64 E-value=2.7e+02 Score=25.58 Aligned_cols=53 Identities=17% Similarity=0.040 Sum_probs=36.3
Q ss_pred CeEEEEeCCHHH---HHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 18 LRVLVVDDDPIW---LRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 18 ~~Ilivdd~~~~---~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
.+|.++.-|... .+.+..+-+..|..+....+..+..+.+... ..+|+||+|.
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~~D~VLIDT 271 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GDKHLVLIDT 271 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cCCCEEEEeC
Confidence 478888777643 3555555555677776677878877777643 3579999998
No 427
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.55 E-value=67 Score=25.69 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=40.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECC-HHHHHHHHHhcCCCccEEEEeCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNR-AEIALDMLRMSKNGYDIVISDVHM 73 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~-~~~~~~~l~~~~~~~dlvilD~~l 73 (184)
.+.+|.|+......-..|...|.+.|+.+..+++ ..+..+..+ ..|+|++-+.-
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~----~ADIVIsavg~ 211 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCR----RADILVAAVGR 211 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHh----cCCEEEEecCC
Confidence 5789999999999999999999988999998853 222223332 26999986643
No 428
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=42.52 E-value=1.2e+02 Score=24.18 Aligned_cols=68 Identities=13% Similarity=0.219 Sum_probs=48.4
Q ss_pred ECCHHHHHHHHHhcCCCccEEEEeCCC-------CCCCHHHHHHHhcccCCCCEEEEEccCCh-HHHHHHHHcCCCceE
Q 029986 47 CNRAEIALDMLRMSKNGYDIVISDVHM-------PDMDGFKLHEQVGLEMDLPVIMMSVDGCT-QDVMKGVTHGACNYL 117 (184)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~dlvilD~~l-------~~~~g~~l~~~l~~~~~~~iIi~~~~~~~-~~~~~a~~~ga~~~l 117 (184)
+++.+++.+++. ..++|.+=+.+.- |+. .++.++.++...++|+++-..+..+ +...++.+.|+..+=
T Consensus 152 ~T~pe~a~~Fv~--~TgvD~LAvaiGt~HG~Y~~p~l-~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 152 KTEPEKVKDFVE--RTGCDMLAVSIGNVHGLEDIPRI-DIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVN 227 (283)
T ss_pred cCCHHHHHHHHH--HhCcCeeehhccccccCCCCCCc-CHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEE
Confidence 467888888887 4568877666622 222 2688888876668998888666555 567789999987663
No 429
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=42.45 E-value=1.9e+02 Score=23.62 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=39.0
Q ss_pred CeEEEEeCCHH-HHHHHHHHHHhcCCeEEEEC---------CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHh
Q 029986 18 LRVLVVDDDPI-WLRILEKMLRKCLYEVTKCN---------RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 18 ~~Ilivdd~~~-~~~~l~~~L~~~~~~v~~~~---------~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
-|++||-|... ....+...|+..+..+..+. +.+++.+.++ +..+|.||- +.+++-++..+.+
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~--~~~~D~IIa---vGGGs~~D~aK~i 96 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLR--EFGPDAVLA---VGGGSVLDTAKAL 96 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHH--hcCcCEEEE---eCCcHHHHHHHHH
Confidence 36888877655 45667778877666555442 2445555555 456898763 3566666666654
No 430
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=42.40 E-value=1.6e+02 Score=22.94 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=31.7
Q ss_pred CCeEE-EEeCCHHHHHHHHHHHHhcCCeEEEECC-------HHHHHHHHHhcCCCccEEEEeCC
Q 029986 17 GLRVL-VVDDDPIWLRILEKMLRKCLYEVTKCNR-------AEIALDMLRMSKNGYDIVISDVH 72 (184)
Q Consensus 17 ~~~Il-ivdd~~~~~~~l~~~L~~~~~~v~~~~~-------~~~~~~~l~~~~~~~dlvilD~~ 72 (184)
+..|. ++.+++.. +.+.++..|+.+....+ ..+..+.+. ...||++|+|.-
T Consensus 31 g~~v~f~~~~~~~~---~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~--~~~~d~vV~D~y 89 (279)
T TIGR03590 31 GAEVAFACKPLPGD---LIDLLLSAGFPVYELPDESSRYDDALELINLLE--EEKFDILIVDHY 89 (279)
T ss_pred CCEEEEEeCCCCHH---HHHHHHHcCCeEEEecCCCchhhhHHHHHHHHH--hcCCCEEEEcCC
Confidence 44544 44444332 34567778888876643 345666665 446999999985
No 431
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=42.33 E-value=1.1e+02 Score=22.85 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=33.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVIS 69 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvil 69 (184)
|||.|+|=-.-....+.+.|++.|+ ++....+.++ + ..+|.||+
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~----l----~~~d~lIl 47 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDA----V----AAADRVVL 47 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHH----h----cCCCEEEE
Confidence 6899999777677888899999888 7777776544 2 23789988
No 432
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.22 E-value=1.1e+02 Score=26.33 Aligned_cols=74 Identities=14% Similarity=0.273 Sum_probs=47.4
Q ss_pred CCccEEEEeC-CCCCCCHHH-HHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 62 NGYDIVISDV-HMPDMDGFK-LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 62 ~~~dlvilD~-~l~~~~g~~-l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
..+.++|+|- ++-..+.++ +++.+. .+...++++....+...+...+..-+.-|-.+|++..++...+..+...
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLE-EPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLE-EPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhh-cCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHH
Confidence 3467888874 443433433 344442 3444454443334456666777777888999999999999988887664
No 433
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=42.21 E-value=69 Score=21.71 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=23.7
Q ss_pred CeEEEEeCCHHH--HHHHHHHHHhc--CCeEEEECCHHHHHHH
Q 029986 18 LRVLVVDDDPIW--LRILEKMLRKC--LYEVTKCNRAEIALDM 56 (184)
Q Consensus 18 ~~Ilivdd~~~~--~~~l~~~L~~~--~~~v~~~~~~~~~~~~ 56 (184)
+|+.||.|=... .+.|+.++... |-.+..+.+.++++++
T Consensus 70 iklAivGD~s~~~~S~~l~dfi~EsN~G~~~~F~~~~~eA~~~ 112 (113)
T PF13788_consen 70 IKLAIVGDFSAYATSKSLRDFIYESNRGNHFFFVPDEEEAIAW 112 (113)
T ss_pred eeEEEEEcccccccchhHHHHHHHhcCCCeEEEECCHHHHHhh
Confidence 566666554444 56666666533 6667777777666654
No 434
>PLN02316 synthase/transferase
Probab=41.97 E-value=3.2e+02 Score=26.16 Aligned_cols=113 Identities=9% Similarity=0.080 Sum_probs=62.3
Q ss_pred CCeEEEEeC--CHHHHHHHHHHHHhcCC----eEEEECCHHHHH--HHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc
Q 029986 17 GLRVLVVDD--DPIWLRILEKMLRKCLY----EVTKCNRAEIAL--DMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE 88 (184)
Q Consensus 17 ~~~Ilivdd--~~~~~~~l~~~L~~~~~----~v~~~~~~~~~~--~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~ 88 (184)
+.+++|+.+ ++.....+..+....+. .+..+....+.+ .++. ..|++++-. +...-|+..++.++
T Consensus 869 ~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iya----aADiflmPS-~~EP~GLvqLEAMa-- 941 (1036)
T PLN02316 869 NGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYA----GADFILVPS-IFEPCGLTQLTAMR-- 941 (1036)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHH----hCcEEEeCC-cccCccHHHHHHHH--
Confidence 456777775 33344455554443321 233222222222 2322 268888864 34556766666654
Q ss_pred CCCCEEEEEccCChHHHHHH---------HHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 89 MDLPVIMMSVDGCTQDVMKG---------VTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 89 ~~~~iIi~~~~~~~~~~~~a---------~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
..+|+|+-....-.+.+.+. -..|..+|+..|.+...|..++..++..
T Consensus 942 ~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 942 YGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISA 998 (1036)
T ss_pred cCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 35666654333333333221 0124789999999999999999888763
No 435
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=41.95 E-value=1.4e+02 Score=23.48 Aligned_cols=51 Identities=14% Similarity=0.101 Sum_probs=36.6
Q ss_pred HHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 82 HEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 82 ~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
++.+++. ++...|.++. .+.+.+..+...|++...+-|+..+.+..++..+
T Consensus 171 v~~~r~~~~~~~~I~vev-~t~eea~~A~~~gaD~I~ld~~~~e~l~~~v~~i 222 (269)
T cd01568 171 VKRARAAAPFEKKIEVEV-ETLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 222 (269)
T ss_pred HHHHHHhCCCCCeEEEec-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 3444433 3233455544 5678899999999998889999999998887765
No 436
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=41.88 E-value=1.8e+02 Score=23.34 Aligned_cols=78 Identities=21% Similarity=0.216 Sum_probs=51.9
Q ss_pred CCCeEEEEeCCHHHH-HHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCC-------HHHHHHHhcc
Q 029986 16 AGLRVLVVDDDPIWL-RILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD-------GFKLHEQVGL 87 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~-~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~-------g~~l~~~l~~ 87 (184)
..++|+|.|..|... ..+.+.|++.|..+....+..-+.-+ . ..|.||+..+.-..| |-..+....+
T Consensus 144 k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~-~----~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~ 218 (301)
T COG1184 144 KRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFM-S----RVDKVLVGADAILANGALVNKIGTSPLALAAR 218 (301)
T ss_pred CceEEEEEcCCCcchHHHHHHHHHHcCCceEEEechHHHHHH-H----hCCEEEECccceecCCcEEeccchHHHHHHHH
Confidence 346899999888754 44668888889888877766555433 2 268888866555444 3334444444
Q ss_pred cCCCCEEEEEc
Q 029986 88 EMDLPVIMMSV 98 (184)
Q Consensus 88 ~~~~~iIi~~~ 98 (184)
....|+++.+.
T Consensus 219 e~~~Pf~v~ae 229 (301)
T COG1184 219 ELRVPFYVVAE 229 (301)
T ss_pred HhCCCEEEEee
Confidence 56789888864
No 437
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=41.80 E-value=1.9e+02 Score=23.53 Aligned_cols=63 Identities=17% Similarity=0.137 Sum_probs=39.9
Q ss_pred CeEEEEeCCHHHH-----HHHHHHHHhcCCeEEEEC---------CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHH
Q 029986 18 LRVLVVDDDPIWL-----RILEKMLRKCLYEVTKCN---------RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHE 83 (184)
Q Consensus 18 ~~Ilivdd~~~~~-----~~l~~~L~~~~~~v~~~~---------~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~ 83 (184)
-|++||-|..... +.+...|+..|.++..+. +..++.+.++ +..+|+||- ..+++-++..+
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~--~~~~D~IIa---vGGGSviD~aK 100 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAK--KFNADFVIG---IGGGSPLDAAK 100 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHH--hcCCCEEEE---eCCchHHHHHH
Confidence 5788888765522 557777877776665543 2344555555 456898875 45677777666
Q ss_pred Hh
Q 029986 84 QV 85 (184)
Q Consensus 84 ~l 85 (184)
-+
T Consensus 101 ~i 102 (357)
T cd08181 101 AI 102 (357)
T ss_pred HH
Confidence 43
No 438
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.79 E-value=1.8e+02 Score=23.24 Aligned_cols=93 Identities=16% Similarity=0.239 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCeEEEECCHHHHHH---HHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc--cCCCCEEEEEccCChH
Q 029986 29 WLRILEKMLRKCLYEVTKCNRAEIALD---MLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL--EMDLPVIMMSVDGCTQ 103 (184)
Q Consensus 29 ~~~~l~~~L~~~~~~v~~~~~~~~~~~---~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~--~~~~~iIi~~~~~~~~ 103 (184)
....+...|++.|+++........... ........+|++|+ -++|| .+++..+. ..+.|++.+..
T Consensus 20 ~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDG-T~l~~~~~~~~~~~pv~gin~----- 89 (305)
T PRK02645 20 AAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIV----LGGDG-TVLAAARHLAPHDIPILSVNV----- 89 (305)
T ss_pred HHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEE----ECCcH-HHHHHHHHhccCCCCEEEEec-----
Confidence 344556667777888765443221110 00111234788887 26777 33333322 24678877742
Q ss_pred HHHHHHHcCCCceEeCCCC-HHHHHHHHHHHHcCCCC
Q 029986 104 DVMKGVTHGACNYLLKPIR-IKELRNIWQHVAQQPKP 139 (184)
Q Consensus 104 ~~~~a~~~ga~~~l~kP~~-~~~l~~~l~~~~~~~~~ 139 (184)
.|-.+|+.-... ..+ .+.++.+.++...
T Consensus 90 -------~G~lGFL~~~~~~~~~-~~~l~~i~~g~~~ 118 (305)
T PRK02645 90 -------GGHLGFLTHPRDLLQD-ESVWDRLQEDRYA 118 (305)
T ss_pred -------CCcceEecCchhhcch-HHHHHHHHcCCce
Confidence 256688885421 233 6778888776543
No 439
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.78 E-value=67 Score=25.57 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=43.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~ 76 (184)
.+.+|+|+......-.-|..+|...+.+|..++.....+...- ...|++|.-..-|+.
T Consensus 163 ~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~---~~ADIvv~AvG~p~~ 220 (287)
T PRK14176 163 EGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYT---LDADILVVATGVKHL 220 (287)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHH---hhCCEEEEccCCccc
Confidence 5779999999999999999999988998887775443333221 237999998776653
No 440
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=41.77 E-value=1.7e+02 Score=22.82 Aligned_cols=109 Identities=23% Similarity=0.290 Sum_probs=62.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEEC--CHHHHHHHHHhcCCCccEEEEeCCCC-----CCCHHHHHHHhcc
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCN--RAEIALDMLRMSKNGYDIVISDVHMP-----DMDGFKLHEQVGL 87 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~--~~~~~~~~l~~~~~~~dlvilD~~l~-----~~~g~~l~~~l~~ 87 (184)
++++.++.+.+. ...+...++..+. .+.... +.++....+. . .|++++-...+ +.-|..+++.+.
T Consensus 210 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~--~--adi~l~~s~~~~~~~~e~~~~~~~Ea~a- 283 (355)
T cd03799 210 DFRLDIVGDGPL-RDELEALIAELGLEDRVTLLGAKSQEEVRELLR--A--ADLFVLPSVTAADGDREGLPVVLMEAMA- 283 (355)
T ss_pred CeEEEEEECCcc-HHHHHHHHHHcCCCCeEEECCcCChHHHHHHHH--h--CCEEEecceecCCCCccCccHHHHHHHH-
Confidence 455666655432 2334444444321 233222 2355555554 2 57777754432 333556666653
Q ss_pred cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 88 EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 88 ~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
..+|+|..-. ....+.+..|..+++..|-+.+++.+.+..++..
T Consensus 284 -~G~Pvi~~~~----~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 284 -MGLPVISTDV----SGIPELVEDGETGLLVPPGDPEALADAIERLLDD 327 (355)
T ss_pred -cCCCEEecCC----CCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 4678875322 2233456777789999999999999999988753
No 441
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=41.64 E-value=1.6e+02 Score=22.68 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=47.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccC--C----hHHHHHHHHcCCCceE-----eCCCCHHHHHHH
Q 029986 61 KNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDG--C----TQDVMKGVTHGACNYL-----LKPIRIKELRNI 129 (184)
Q Consensus 61 ~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~--~----~~~~~~a~~~ga~~~l-----~kP~~~~~l~~~ 129 (184)
+.+.|.|-+... .+.+.++++.....+||+++..-. + .+.+..++++|+++.. .+.-++.+..+.
T Consensus 167 ~~GADyikt~~~----~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~ 242 (258)
T TIGR01949 167 ELGADIVKTPYT----GDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKA 242 (258)
T ss_pred HHCCCEEeccCC----CCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHH
Confidence 356898888632 357777777555578998775544 2 3455677799999774 334456666666
Q ss_pred HHHHHcCCC
Q 029986 130 WQHVAQQPK 138 (184)
Q Consensus 130 l~~~~~~~~ 138 (184)
+..+.....
T Consensus 243 l~~~i~~~~ 251 (258)
T TIGR01949 243 VCKIVHENA 251 (258)
T ss_pred HHHHHhCCC
Confidence 666655443
No 442
>PRK10481 hypothetical protein; Provisional
Probab=41.61 E-value=1.6e+02 Score=22.55 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=39.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEEC------CHHHHHHHHHh-cCCCccEEEEeCCCCCCCHHHHHHHhcccCC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCN------RAEIALDMLRM-SKNGYDIVISDVHMPDMDGFKLHEQVGLEMD 90 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~------~~~~~~~~l~~-~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~ 90 (184)
-++.|+-..+.......+.....|+.+.... +.....+..+. ...+.|+|++|.. +... +....+...-+
T Consensus 130 ~riGVitP~~~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~--G~~~-~~~~~le~~lg 206 (224)
T PRK10481 130 HQVGVIVPVEEQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCL--GYHQ-RHRDLLQKALD 206 (224)
T ss_pred CeEEEEEeCHHHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCC--CcCH-HHHHHHHHHHC
Confidence 4677777766665555554544476644222 22223333221 1356888888874 2232 44555554556
Q ss_pred CCEE
Q 029986 91 LPVI 94 (184)
Q Consensus 91 ~~iI 94 (184)
.|||
T Consensus 207 ~PVI 210 (224)
T PRK10481 207 VPVL 210 (224)
T ss_pred cCEE
Confidence 7776
No 443
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=41.51 E-value=1.5e+02 Score=22.13 Aligned_cols=57 Identities=11% Similarity=0.149 Sum_probs=37.4
Q ss_pred CCCccEEEEeCCC-----CCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHc-CCCceE
Q 029986 61 KNGYDIVISDVHM-----PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTH-GACNYL 117 (184)
Q Consensus 61 ~~~~dlvilD~~l-----~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~-ga~~~l 117 (184)
+.+.|.+.+.... .....++.++.+++..++||+.-..-.+.+.+.+++.. |++...
T Consensus 149 ~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 149 DAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred HhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 3456777654431 12234677777776667888887766678888888887 677553
No 444
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=41.16 E-value=1.6e+02 Score=22.47 Aligned_cols=78 Identities=18% Similarity=0.086 Sum_probs=46.8
Q ss_pred HHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEE--E-eCCCCCCCHHHHHHHhc----ccCCCCEEEEEccCChHHHH
Q 029986 36 MLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVI--S-DVHMPDMDGFKLHEQVG----LEMDLPVIMMSVDGCTQDVM 106 (184)
Q Consensus 36 ~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvi--l-D~~l~~~~g~~l~~~l~----~~~~~~iIi~~~~~~~~~~~ 106 (184)
.|...|. .++.+.+..+++-.... +.+.|= + -+.-.+.||.++++.+. ....-.-|+.++-.+...+.
T Consensus 100 ~L~~~Gi~vn~T~ifs~~Qa~~Aa~a---Ga~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~ 176 (222)
T PRK12656 100 TLKAEGYHITATAIYTVFQGLLAIEA---GADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAASFKNVAQVN 176 (222)
T ss_pred HHHHCCCceEEeeeCCHHHHHHHHHC---CCCEEecccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEecCCHHHHH
Confidence 4555554 34456677777766552 233221 1 11223568888877763 22222345567788899999
Q ss_pred HHHHcCCCce
Q 029986 107 KGVTHGACNY 116 (184)
Q Consensus 107 ~a~~~ga~~~ 116 (184)
++...|++..
T Consensus 177 ~a~~~G~d~v 186 (222)
T PRK12656 177 KAFALGAQAV 186 (222)
T ss_pred HHHHcCCCEE
Confidence 9999999855
No 445
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.13 E-value=1.3e+02 Score=24.03 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=42.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHH-HHHHhcCCCccEEEEeCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIAL-DMLRMSKNGYDIVISDVHMPD 75 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~-~~l~~~~~~~dlvilD~~l~~ 75 (184)
.+.+|+|+......-..+..+|...|..|..+++....+ +.++ ..|+||.-..-|.
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~----~ADIVIsAvg~p~ 213 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLK----DADVIVSAVGKPG 213 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHh----hCCEEEECCCCCc
Confidence 567999999999999999999998888888776643333 3332 3799999886554
No 446
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=40.99 E-value=1.7e+02 Score=23.81 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=40.3
Q ss_pred HHHHHhcccC--CCCEEEEEccCChHHHHHHHHcCCCce------EeC-CCCHHHHHHHHHHHHc
Q 029986 80 KLHEQVGLEM--DLPVIMMSVDGCTQDVMKGVTHGACNY------LLK-PIRIKELRNIWQHVAQ 135 (184)
Q Consensus 80 ~l~~~l~~~~--~~~iIi~~~~~~~~~~~~a~~~ga~~~------l~k-P~~~~~l~~~l~~~~~ 135 (184)
+.++.++... ++|||....-.+.+.+.+.+.+||+.. +.+ |.-..++.+-+...+.
T Consensus 277 ~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 277 EVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR 341 (344)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 3556665433 689999988888999999999999865 344 6666666666666554
No 447
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.76 E-value=60 Score=25.81 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=44.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~ 76 (184)
.+.+|+|+......-.-|..+|...+.+|..+++...-+...- ...|+++.-..-|+.
T Consensus 158 ~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~~~---~~ADIvIsAvGk~~~ 215 (284)
T PRK14177 158 TGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIV---RQADIIVGAVGKPEF 215 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHH---hhCCEEEEeCCCcCc
Confidence 4678999999999999999999988999988876544443322 237999998866654
No 448
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.75 E-value=59 Score=25.91 Aligned_cols=58 Identities=24% Similarity=0.310 Sum_probs=44.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~ 76 (184)
.+.+|+|+......=.-+..+|.+.+.+|..+++...-+...- ...|+++.-..-|+.
T Consensus 158 ~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~~L~~~~---~~ADIvV~AvGkp~~ 215 (288)
T PRK14171 158 TGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSIT---SKADIVVAAIGSPLK 215 (288)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHH---hhCCEEEEccCCCCc
Confidence 4778999999999999999999988999988876444343321 237999998876653
No 449
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.66 E-value=64 Score=25.63 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=45.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~ 76 (184)
.+.+|+|+......=.-|..+|.+.+.+|..+++...-+...- ...|+++.-..-|+.
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~~~~---~~ADIvIsAvGkp~~ 213 (282)
T PRK14166 156 EGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYT---RQADLIIVAAGCVNL 213 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHH---hhCCEEEEcCCCcCc
Confidence 5779999999999999999999988999988776544444322 237999998866654
No 450
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.47 E-value=65 Score=25.60 Aligned_cols=58 Identities=24% Similarity=0.326 Sum_probs=44.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~ 76 (184)
.+.+|+|+......-.-|..+|.+.+.+|..+++...-+...- ...|+++.-..-|+.
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~~---k~ADIvIsAvGkp~~ 214 (282)
T PRK14180 157 EGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHT---TKADILIVAVGKPNF 214 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHHh---hhcCEEEEccCCcCc
Confidence 4779999999999999999999988999888876544333321 237999998866654
No 451
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.45 E-value=64 Score=25.60 Aligned_cols=57 Identities=26% Similarity=0.322 Sum_probs=44.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHH-HHHhcCCCccEEEEeCCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALD-MLRMSKNGYDIVISDVHMPDM 76 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~-~l~~~~~~~dlvilD~~l~~~ 76 (184)
.+.+|.|+......=.-|..+|...+.+|..+++...-+. .++ ..|+++.-..-|+.
T Consensus 155 ~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~----~ADIvI~AvG~p~~ 212 (282)
T PRK14169 155 AGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTK----EADILVVAVGVPHF 212 (282)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCHHHHHh----hCCEEEEccCCcCc
Confidence 4779999999999999999999988999888865443333 333 26999998876664
No 452
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=40.41 E-value=69 Score=25.69 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=43.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~ 75 (184)
.+.+|+|+......=.-|..+|.+.+.+|..+++...-+...- ...|+|+.-..-|.
T Consensus 166 ~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl~~~~---~~ADIvv~AvGk~~ 222 (299)
T PLN02516 166 KGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESIV---READIVIAAAGQAM 222 (299)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHH---hhCCEEEEcCCCcC
Confidence 4779999999999999999999988999988876544333322 23699999875553
No 453
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.40 E-value=64 Score=25.61 Aligned_cols=58 Identities=22% Similarity=0.204 Sum_probs=44.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~ 76 (184)
.+.+|.|+......-.-|..+|.+.+.+|..+++....+...- ...|+++.-..-|+.
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~---~~ADIvI~AvGk~~~ 213 (282)
T PRK14182 156 KGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEV---GRADILVAAIGKAEL 213 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHH---hhCCEEEEecCCcCc
Confidence 5779999999999999999999988888888876554343322 237999998865553
No 454
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=40.39 E-value=1.5e+02 Score=21.97 Aligned_cols=69 Identities=9% Similarity=0.016 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCe-EEEECCHHHHHH---HHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEcc
Q 029986 31 RILEKMLRKCLYE-VTKCNRAEIALD---MLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVD 99 (184)
Q Consensus 31 ~~l~~~L~~~~~~-v~~~~~~~~~~~---~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~ 99 (184)
+.|+..+...+-. +.+++-+.+..- ++........++++|..+.-.+..++++++...-++.++++...
T Consensus 3 ~~l~~a~~~~~~~~~~s~SgGKDS~Vll~L~~~~~~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~~~ 75 (212)
T TIGR00434 3 EIIAWAYVTFGGHLVYSTSFGIQGAVLLDLVSKISPDIPVIFLDTGYHFPETYELIDELTERYPLNIKVYKPD 75 (212)
T ss_pred HHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCc
Confidence 3456666666533 445554555443 33333344689999998888888888888865555677776543
No 455
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=40.30 E-value=1.3e+02 Score=23.59 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=33.1
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
...|.++. .+.+.+..+.+.|+|....-|+.++++..++..+
T Consensus 182 ~~~Igvev-~s~eea~~A~~~gaDyI~ld~~~~e~l~~~~~~~ 223 (268)
T cd01572 182 TLKIEVEV-ETLEQLKEALEAGADIIMLDNMSPEELREAVALL 223 (268)
T ss_pred CCeEEEEE-CCHHHHHHHHHcCCCEEEECCcCHHHHHHHHHHc
Confidence 33555554 4578888999999998889999999998888754
No 456
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=40.29 E-value=2e+02 Score=23.28 Aligned_cols=75 Identities=12% Similarity=0.126 Sum_probs=44.6
Q ss_pred CeEEEEeCCHHH---HHHHHHHHHhcCCeEEEEC------C---HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHh
Q 029986 18 LRVLVVDDDPIW---LRILEKMLRKCLYEVTKCN------R---AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 18 ~~Ilivdd~~~~---~~~l~~~L~~~~~~v~~~~------~---~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
-|++|+-|.... .+.+...|+..|..+..+. + ..++.+..+ ...+|+||- +.+++-++..+.+
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~--~~~~d~iia---vGGGs~~D~aK~i 97 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPA--VQEADMIFA---VGGGKAIDTVKVL 97 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHh--hcCCCEEEE---eCCcHHHHHHHHH
Confidence 578888886543 3445666666565443221 2 334444433 456898874 4577778888877
Q ss_pred cccCCCCEEEEE
Q 029986 86 GLEMDLPVIMMS 97 (184)
Q Consensus 86 ~~~~~~~iIi~~ 97 (184)
......|+|.+.
T Consensus 98 a~~~~~p~i~VP 109 (345)
T cd08171 98 ADKLGKPVFTFP 109 (345)
T ss_pred HHHcCCCEEEec
Confidence 544456776664
No 457
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=40.00 E-value=67 Score=27.97 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=36.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCH---HHHHHHHHhcCCCccEEEEeC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRA---EIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~---~~~~~~l~~~~~~~dlvilD~ 71 (184)
++|+|+|....+...|..+|+..|+.+..+.+. ...++.+. ...|+.||+.-
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~--~~~~~~IIlSp 56 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLA--TMSNPVLMLSP 56 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHH--hcCcCEEEEcC
Confidence 479999999999999999999988777665542 11233333 23477777754
No 458
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=39.97 E-value=1.6e+02 Score=22.08 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=29.3
Q ss_pred CCCccEEEEeCCCC-----CCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHH
Q 029986 61 KNGYDIVISDVHMP-----DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGV 109 (184)
Q Consensus 61 ~~~~dlvilD~~l~-----~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~ 109 (184)
+..+|+||+|--.. =.+--++.+.++..|..-=+|+|....+....+..
T Consensus 120 ~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~A 173 (198)
T COG2109 120 DGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELA 173 (198)
T ss_pred CCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHH
Confidence 56799999986332 13445567777656644445556666565555443
No 459
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=39.77 E-value=1.1e+02 Score=20.00 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=26.3
Q ss_pred eCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCC
Q 029986 24 DDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH 72 (184)
Q Consensus 24 dd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~ 72 (184)
--|..-.+.|...|...||+..... ...|++++...
T Consensus 10 ~~N~~Dse~i~~~l~~~G~~~~~~~-------------e~AD~iiiNTC 45 (98)
T PF00919_consen 10 QMNQYDSERIASILQAAGYEIVDDP-------------EEADVIIINTC 45 (98)
T ss_pred cccHHHHHHHHHHHHhcCCeeeccc-------------ccCCEEEEEcC
Confidence 3466677888899999898776432 33699999874
No 460
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=39.77 E-value=92 Score=24.40 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEe
Q 029986 29 WLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISD 70 (184)
Q Consensus 29 ~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD 70 (184)
....+...|++.|+++.......+.++.+. ...+|+||.-
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~--~~~~D~v~~~ 63 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLK--ELGFDRVFNA 63 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhc--cCCCCEEEEe
Confidence 446778888889999887765566666665 4568999964
No 461
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=39.67 E-value=1.7e+02 Score=22.42 Aligned_cols=75 Identities=21% Similarity=0.184 Sum_probs=50.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHH-HHHHhc-ccCCCCEEE
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFK-LHEQVG-LEMDLPVIM 95 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~-l~~~l~-~~~~~~iIi 95 (184)
.|||-..-.-.-..|.+.|...|-+|..+...++.++..........-.++|+ .+.++.. +.+++. ..|.+-++|
T Consensus 7 TiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv--~d~~~~~~lvewLkk~~P~lNvli 83 (245)
T COG3967 7 TILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDV--ADRDSRRELVEWLKKEYPNLNVLI 83 (245)
T ss_pred EEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecc--cchhhHHHHHHHHHhhCCchheee
Confidence 57777777777778888888888888888888888887764332334455555 4555543 667774 446666654
No 462
>PF13941 MutL: MutL protein
Probab=39.58 E-value=2.4e+02 Score=24.12 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=66.1
Q ss_pred CCeEEEEeCCHH-HHHHHHHHHHhcCCeEE---EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCH---HHHHHHhc-cc
Q 029986 17 GLRVLVVDDDPI-WLRILEKMLRKCLYEVT---KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG---FKLHEQVG-LE 88 (184)
Q Consensus 17 ~~~Ilivdd~~~-~~~~l~~~L~~~~~~v~---~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g---~~l~~~l~-~~ 88 (184)
++|++++.=-+. ..+.-++.-...|-.|. ...-.+..++.+. ...||+|++-=.-.+++. +...+.|. ..
T Consensus 76 GLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~--~~~PDiILLaGGtDgG~~~~il~nA~~La~~~ 153 (457)
T PF13941_consen 76 GLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIR--EIRPDIILLAGGTDGGNKEVILHNAEMLAEAN 153 (457)
T ss_pred cceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHh--ccCCCEEEEeCCccCCchHHHHHHHHHHHhCC
Confidence 567666664443 33333333334455443 3333455666666 566999999544334442 44555664 33
Q ss_pred CCCCEEEEEccCChHHHHHHHH-cCCCceEeCCC-------CHHHHHHHHHHHH
Q 029986 89 MDLPVIMMSVDGCTQDVMKGVT-HGACNYLLKPI-------RIKELRNIWQHVA 134 (184)
Q Consensus 89 ~~~~iIi~~~~~~~~~~~~a~~-~ga~~~l~kP~-------~~~~l~~~l~~~~ 134 (184)
..+|||+-.+....+.+.+.|. .|..-+++..+ ..+-.++.++.+.
T Consensus 154 ~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F 207 (457)
T PF13941_consen 154 LRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNVEPAREAIREVF 207 (457)
T ss_pred CCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcChHHHHHHHHHHH
Confidence 4778887777666778888888 66666665433 3344455555443
No 463
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=39.50 E-value=2.1e+02 Score=23.70 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=51.9
Q ss_pred CCCCeEEEEeCCHHHHHH-H-HHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCC--CCCC-----CHHHHHHHh
Q 029986 15 PAGLRVLVVDDDPIWLRI-L-EKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH--MPDM-----DGFKLHEQV 85 (184)
Q Consensus 15 ~~~~~Ilivdd~~~~~~~-l-~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~--l~~~-----~g~~l~~~l 85 (184)
....+|++.|..|...-. + ...|.+.|..+....+...+.-+- ....|.||+..+ +.++ -|--.+..+
T Consensus 199 gk~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~Dsa~~~~m~---~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~ 275 (363)
T PRK05772 199 GMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVGLVMY---KDMVNNVMVGADRILRDGHVFNKIGTFKEAVI 275 (363)
T ss_pred CCeEEEEECCCCccchhHHHHHHHHHHCCCCEEEEehhHHHHHHh---hcCCCEEEECccEEecCCCEeehhhhHHHHHH
Confidence 345689988888864432 3 467888899888777655444332 235899998543 3332 243345555
Q ss_pred cccCCCCEEEEEcc
Q 029986 86 GLEMDLPVIMMSVD 99 (184)
Q Consensus 86 ~~~~~~~iIi~~~~ 99 (184)
.+.+++|+++++..
T Consensus 276 Ak~~~vPfyV~ap~ 289 (363)
T PRK05772 276 AHELGIPFYALAPT 289 (363)
T ss_pred HHHhCCCEEEEccc
Confidence 55678999988643
No 464
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=39.37 E-value=97 Score=24.00 Aligned_cols=92 Identities=20% Similarity=0.284 Sum_probs=56.0
Q ss_pred CCeEEEEC----CHHHHHHHHHh-cCCCccEEEEe-CCCCC-CCH--HHHHHHhcccCCCCEEEEEccCChHHHHHHHHc
Q 029986 41 LYEVTKCN----RAEIALDMLRM-SKNGYDIVISD-VHMPD-MDG--FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTH 111 (184)
Q Consensus 41 ~~~v~~~~----~~~~~~~~l~~-~~~~~dlvilD-~~l~~-~~g--~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ 111 (184)
+|.|.... ++-+++++.+. .+.+.-=|++. +.-.+ .+| +++++.++..-++|+|.=....+.+...++|..
T Consensus 141 ~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~ 220 (256)
T COG0107 141 WYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTE 220 (256)
T ss_pred cEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHh
Confidence 35555433 33456666653 22333334443 22211 234 457788877778999988888888999999977
Q ss_pred C-CCc------eEeCCCCHHHHHHHHHH
Q 029986 112 G-ACN------YLLKPIRIKELRNIWQH 132 (184)
Q Consensus 112 g-a~~------~l~kP~~~~~l~~~l~~ 132 (184)
| |+. |-.+.++..+++..+..
T Consensus 221 ~~adAaLAAsiFH~~~~~i~evK~yL~~ 248 (256)
T COG0107 221 GKADAALAASIFHFGEITIGEVKEYLAE 248 (256)
T ss_pred cCccHHHhhhhhhcCcccHHHHHHHHHH
Confidence 7 444 44566777777776553
No 465
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=39.31 E-value=2e+02 Score=23.10 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=41.1
Q ss_pred CCCccEEEEeCCCC-----CCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHH-cCCCceE
Q 029986 61 KNGYDIVISDVHMP-----DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVT-HGACNYL 117 (184)
Q Consensus 61 ~~~~dlvilD~~l~-----~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~-~ga~~~l 117 (184)
+.+.|.+.+.-... +...++.++++++..++|||.-..-.+.+.+.++++ .|+++..
T Consensus 160 ~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 160 DCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred HhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 45578777654321 223477888887667899998888778888889887 5888774
No 466
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=39.12 E-value=85 Score=20.89 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=36.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHh-cccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCC--HHHHHH-HHHHHHc
Q 029986 64 YDIVISDVHMPDMDGFKLHEQV-GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIR--IKELRN-IWQHVAQ 135 (184)
Q Consensus 64 ~dlvilD~~l~~~~g~~l~~~l-~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~--~~~l~~-~l~~~~~ 135 (184)
...|++-.. +| ...+.+ +..|.+||++++.... -...-.+--|+..++.++.. .+++.. +++.+.+
T Consensus 17 ak~Ivv~T~----sG-~ta~~isk~RP~~pIiavt~~~~-~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~~~~ 86 (117)
T PF02887_consen 17 AKAIVVFTE----SG-RTARLISKYRPKVPIIAVTPNES-VARQLSLYWGVYPVLIEEFDKDTEELIAEALEYAKE 86 (117)
T ss_dssp ESEEEEE-S----SS-HHHHHHHHT-TSSEEEEEESSHH-HHHHGGGSTTEEEEECSSHSHSHHHHHHHHHHHHHH
T ss_pred CCEEEEECC----Cc-hHHHHHHhhCCCCeEEEEcCcHH-HHhhhhcccceEEEEeccccccHHHHHHHHHHHHHH
Confidence 566666543 34 233444 4458899999986432 22223466688887777665 555544 4444333
No 467
>PLN02591 tryptophan synthase
Probab=38.97 E-value=1.8e+02 Score=22.54 Aligned_cols=99 Identities=12% Similarity=-0.040 Sum_probs=60.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEE-EE-CCH-HHHHHHHHhcCCCccEEEE-e-CCCCC------CCHHHHHHHhccc
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVT-KC-NRA-EIALDMLRMSKNGYDIVIS-D-VHMPD------MDGFKLHEQVGLE 88 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~-~~-~~~-~~~~~~l~~~~~~~dlvil-D-~~l~~------~~g~~l~~~l~~~ 88 (184)
++|.|-.......+...+++.|.... .+ .+. ++-+..+.... ...|-+ - ....+ .+..++++.+++.
T Consensus 110 viipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~--~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~ 187 (250)
T PLN02591 110 LVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS--EGFVYLVSSTGVTGARASVSGRVESLLQELKEV 187 (250)
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC--CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc
Confidence 77777777777788888888776543 22 232 33334443222 233322 2 11111 1124457777766
Q ss_pred CCCCEEEEEccCChHHHHHHHHcCCCceEeCC
Q 029986 89 MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120 (184)
Q Consensus 89 ~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP 120 (184)
.+.|+++=..-.+.+.+..+.+.|||+.++-.
T Consensus 188 ~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 188 TDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 78888875566668899999999999998754
No 468
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.95 E-value=70 Score=25.34 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=44.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~ 76 (184)
.+.+|.|+......=.-|..+|...+.+|..+++...-+...- ...|+++.-..-|+.
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~---~~ADIvIsAvGkp~~ 214 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVC---KKADILVVAIGRPKF 214 (278)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHH---hhCCEEEEcCCCcCc
Confidence 5779999999999999999999988999988875443333321 236999998866654
No 469
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=38.79 E-value=1.6e+02 Score=24.21 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCccEEEEe-CCC----CCCC--HHHHHHHhcccCCCCEEE-EEccCC-----hHHHHHHHHcCCCceE
Q 029986 51 EIALDMLRMSKNGYDIVISD-VHM----PDMD--GFKLHEQVGLEMDLPVIM-MSVDGC-----TQDVMKGVTHGACNYL 117 (184)
Q Consensus 51 ~~~~~~l~~~~~~~dlvilD-~~l----~~~~--g~~l~~~l~~~~~~~iIi-~~~~~~-----~~~~~~a~~~ga~~~l 117 (184)
..+.+.+... ...+++++. ... ++.+ .+..+..++...++||++ -+.... ......|...||++.+
T Consensus 242 ~~Ave~i~~~-Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~ 320 (360)
T PRK12595 242 IYAAEYIMSQ-GNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVM 320 (360)
T ss_pred HHHHHHHHHC-CCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEE
Confidence 4455555432 336899997 322 1111 344455665556789776 433332 2245568999998765
No 470
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=38.69 E-value=1.7e+02 Score=22.28 Aligned_cols=72 Identities=17% Similarity=0.069 Sum_probs=46.9
Q ss_pred CHHHHHHHHHh-cCCCccEEEEeCCCCCCCHHHHHHHhcccC-CCCEEEEEccCChHHHHHHHHcCCCceEeCCC
Q 029986 49 RAEIALDMLRM-SKNGYDIVISDVHMPDMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121 (184)
Q Consensus 49 ~~~~~~~~l~~-~~~~~dlvilD~~l~~~~g~~l~~~l~~~~-~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~ 121 (184)
+.+++...... ..-...++.+| .-...-..++++++++.. ++|+++=..-.+.+.+..++++||+..++-..
T Consensus 133 ~~e~~~ayA~aae~~g~~ivyLe-~SG~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsa 206 (219)
T cd02812 133 KPEDAAAYALAAEYLGMPIVYLE-YSGAYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNI 206 (219)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeC-CCCCcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECch
Confidence 44444444432 12235777777 212223367888887654 78888766667789999999999999987655
No 471
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=38.59 E-value=1.2e+02 Score=20.16 Aligned_cols=89 Identities=15% Similarity=0.014 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHhcccCCCCEEEEEccCCh
Q 029986 25 DDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM--DGFKLHEQVGLEMDLPVIMMSVDGCT 102 (184)
Q Consensus 25 d~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~--~g~~l~~~l~~~~~~~iIi~~~~~~~ 102 (184)
......+.++..|...|..+....+.......+.. -.+-|++|+= ..++. +-.+.++..+. .+.|+|.+|+..+.
T Consensus 10 ~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-~~~~d~vi~i-S~sG~t~~~~~~~~~a~~-~g~~vi~iT~~~~s 86 (128)
T cd05014 10 KSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGM-VTPGDVVIAI-SNSGETDELLNLLPHLKR-RGAPIIAITGNPNS 86 (128)
T ss_pred HhHHHHHHHHHHhhcCCCceEEcccchhhccccCc-CCCCCEEEEE-eCCCCCHHHHHHHHHHHH-CCCeEEEEeCCCCC
Confidence 44456677777777777777666554332222221 1223676663 33333 23555555543 47899999986654
Q ss_pred HHHHHHHHcCCCceEeCCC
Q 029986 103 QDVMKGVTHGACNYLLKPI 121 (184)
Q Consensus 103 ~~~~~a~~~ga~~~l~kP~ 121 (184)
.... .++..+.-|.
T Consensus 87 ~la~-----~ad~~l~~~~ 100 (128)
T cd05014 87 TLAK-----LSDVVLDLPV 100 (128)
T ss_pred chhh-----hCCEEEECCC
Confidence 4332 3555555443
No 472
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=38.58 E-value=1.4e+02 Score=23.35 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=32.9
Q ss_pred CEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 92 PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
..|.++. .+.+.+..|.+.|+|...+-|+.++.+.+.+..+
T Consensus 179 ~~Igvev-~t~eea~~A~~~gaDyI~ld~~~~e~lk~~v~~~ 219 (265)
T TIGR00078 179 LKIEVEV-ESLEEAEEAAEAGADIIMLDNMKPEEIKEAVQLL 219 (265)
T ss_pred CeEEEEe-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4455544 4678899999999998889999999999988764
No 473
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=38.46 E-value=1.6e+02 Score=21.57 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=29.2
Q ss_pred CCCccEEEEeCCCC-----CCCHHHHHHHhcccCCCCEEEEEccCChHHHHHH
Q 029986 61 KNGYDIVISDVHMP-----DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKG 108 (184)
Q Consensus 61 ~~~~dlvilD~~l~-----~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a 108 (184)
...+|+||+|--+. =.+.-++++.|...|.--=+|+|....++...+.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~ 147 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLEL 147 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 46699999996432 1234466777765554445556666656655443
No 474
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=38.39 E-value=1.9e+02 Score=22.44 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=39.1
Q ss_pred ccEEEEeCCCCCC----CHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 64 YDIVISDVHMPDM----DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 64 ~dlvilD~~l~~~----~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
.|++++-...... .+..+++.+ ...+|+|....... ...+..|-.+++..+-+.+++.+.+..++.
T Consensus 295 ~di~i~~~~~~~~~~~~~p~~~~Ea~--~~G~pvi~~~~~~~----~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 364 (394)
T cd03794 295 ADVGLVPLKPGPAFEGVSPSKLFEYM--AAGKPVLASVDGES----AELVEEAGAGLVVPPGDPEALAAAILELLD 364 (394)
T ss_pred hCeeEEeccCcccccccCchHHHHHH--HCCCcEEEecCCCc----hhhhccCCcceEeCCCCHHHHHHHHHHHHh
Confidence 4666654433321 122244444 24678876533322 233444567889989899999999998874
No 475
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=38.37 E-value=2e+02 Score=22.66 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=33.0
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHHhcCCeEEEECCHHHHHHHHHh--cCCCccEEEEeCC
Q 029986 17 GLRVLVVDDDPI---WLRILEKMLRKCLYEVTKCNRAEIALDMLRM--SKNGYDIVISDVH 72 (184)
Q Consensus 17 ~~~Ilivdd~~~---~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~--~~~~~dlvilD~~ 72 (184)
+.++.+++-+.. ....++.+....++.+....+..+..+.+.. ....+|+||+|.-
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~ 163 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTA 163 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 346776665543 3444555555567777766665554444321 1235899999983
No 476
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.33 E-value=72 Score=25.56 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=44.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~ 76 (184)
.+.+|+|+......=.-|..+|.+.+.+|..+++...-+...- ...|+|+.-..-|+.
T Consensus 157 ~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~---~~ADIvIsAvGkp~~ 214 (297)
T PRK14186 157 AGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASIT---READILVAAAGRPNL 214 (297)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHH---hhCCEEEEccCCcCc
Confidence 4678999999999999999999988999988875444333321 226999998865553
No 477
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=38.17 E-value=2e+02 Score=22.72 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=57.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC--CeEEEE--CCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCL--YEVTKC--NRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLP 92 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~--~~v~~~--~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~ 92 (184)
.+||.||.--..........+...+ +.+... .+.+.+..... .....-.+-| .+.+-..+++-
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~--~~~~~~~~~~-----------~~~ll~~~~iD 69 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAE--EFGIAKAYTD-----------LEELLADPDID 69 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHH--HcCCCcccCC-----------HHHHhcCCCCC
Confidence 5678888866555554444555432 344333 33444444433 2111211111 12221223343
Q ss_pred EEEEE--ccCChHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHcC
Q 029986 93 VIMMS--VDGCTQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQQ 136 (184)
Q Consensus 93 iIi~~--~~~~~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~~ 136 (184)
+++++ +....+.+..|+++|.+=|+-||+ +.++....++.+.+.
T Consensus 70 ~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 70 AVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred EEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 44443 344567888999999999999999 566777666666553
No 478
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=38.13 E-value=1.9e+02 Score=22.56 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=43.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc--CCeEEEEC-----CHH--HHHHHHHhcCCCccEEEEeCCCCCCCH
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC--LYEVTKCN-----RAE--IALDMLRMSKNGYDIVISDVHMPDMDG 78 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~--~~~v~~~~-----~~~--~~~~~l~~~~~~~dlvilD~~l~~~~g 78 (184)
+.+|.++...+...+.-...|.+. +..+.-.+ ..+ ..++.+. ...||++++-...|...-
T Consensus 108 ~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~--~s~pdil~VgmG~P~QE~ 176 (253)
T COG1922 108 GKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIA--ASGPDILLVGMGVPRQEI 176 (253)
T ss_pred CceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHH--hcCCCEEEEeCCCchhHH
Confidence 589999999999999999989875 34444322 122 3344444 456999999999998764
No 479
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=38.07 E-value=1.4e+02 Score=21.58 Aligned_cols=70 Identities=10% Similarity=0.104 Sum_probs=38.7
Q ss_pred ECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHH----HHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 47 CNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF----KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~----~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
+.|.....+....-+...|+||+|-=.-..+-. ..++.+. .+..+||..|.......+.+.+..-..+|.
T Consensus 70 fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~-k~~~kii~~Tg~~~~~~~~~ll~~~~~~f~ 143 (162)
T PF10237_consen 70 FYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLL-KPGGKIILCTGEEMEELIKKLLGLRMCDFQ 143 (162)
T ss_pred ECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHh-CccceEEEecHHHHHHHHHHHhCeeEEeEE
Confidence 334444333332223568999999754332222 2233332 236788888887777777777744444444
No 480
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=38.04 E-value=69 Score=27.86 Aligned_cols=74 Identities=7% Similarity=0.127 Sum_probs=44.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCe-EEEECCHHHHHHHHHhcCCCccEEEEeCCCC--CCC--HHHHHHHhcccCCCCE
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMP--DMD--GFKLHEQVGLEMDLPV 93 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~--~~~--g~~l~~~l~~~~~~~i 93 (184)
+|+|||........+..+|.+.|.. +.........++.+. ...||.||+.-.-. ..+ -.++++.+ ....||
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~--~~~~d~vIlsgGP~~p~~~~~~~~li~~~--~~~~Pv 76 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIE--ALNPSHIVISPGPGRPEEAGISVEVIRHF--SGKVPI 76 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHH--hcCCCEEEECCCCCChhhCCccHHHHHHh--hcCCCE
Confidence 3899999999999999999998875 555422211123333 34588888754222 112 23444443 235787
Q ss_pred EEE
Q 029986 94 IMM 96 (184)
Q Consensus 94 Ii~ 96 (184)
+-+
T Consensus 77 LGI 79 (534)
T PRK14607 77 LGV 79 (534)
T ss_pred EEE
Confidence 765
No 481
>PRK06444 prephenate dehydrogenase; Provisional
Probab=38.03 E-value=89 Score=23.30 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=35.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEE--------EECCHHHHHHHHHhcCCCccEEEEeCCCCC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVT--------KCNRAEIALDMLRMSKNGYDIVISDVHMPD 75 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~--------~~~~~~~~~~~l~~~~~~~dlvilD~~l~~ 75 (184)
|+|.|+...-..-..+..+|++.|+.|. .+.-.....+.+.... . +++|+.--.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~~~~DlVilavPv~~~~~~i~~~~---~-~v~Dv~SvK 62 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYIKKADHAFLSVPIDAALNYIESYD---N-NFVEISSVK 62 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEECCCCEEEEeCCHHHHHHHHHHhC---C-eEEeccccC
Confidence 5789999988899999999998887764 2333444455554211 2 467875433
No 482
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=37.95 E-value=1.8e+02 Score=22.00 Aligned_cols=102 Identities=13% Similarity=0.008 Sum_probs=58.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHH------HHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHh----ccc
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAE------IALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQV----GLE 88 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~------~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l----~~~ 88 (184)
+|+ +-........+...|++.|+++..+...+ ...+.+ ...+|.+++- ..+|++..... +..
T Consensus 2 ~VL-vTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l---~~~~d~iifT----S~naV~~~~~~~~~~~~~ 73 (240)
T PRK09189 2 RVL-VTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTAL---SEPHGAIAVT----SAEAVRHLAALGERLLPH 73 (240)
T ss_pred eEE-EECCCCchHHHHHHHHHCCCceEEecccccccChhhhhhhh---cCCcCEEEEE----CHHHHHHHHhcchhhHHh
Confidence 443 33444456677888998898877654221 122222 2235665552 24576665432 112
Q ss_pred CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHH
Q 029986 89 MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132 (184)
Q Consensus 89 ~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~ 132 (184)
.+.++..+. +.....+.+.|..+++....+.+.|.+.+..
T Consensus 74 ~~~~~~aVG----~~Ta~~l~~~G~~~~~~~~~~~e~L~~~~~~ 113 (240)
T PRK09189 74 LALPLFAVG----EATAEAARELGFRHVIEGGGDGVRLAETVAA 113 (240)
T ss_pred cCCeEEEEc----HHHHHHHHHcCCCCCcCCCCCHHHHHHHHHH
Confidence 356776664 3444445567887788778888888777654
No 483
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=37.90 E-value=1.8e+02 Score=22.13 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=46.5
Q ss_pred HHHHhcCC--eEEEECCHHHHHHHHHhcCCCccEE--EEe-CCCCCCCHHHHHHHhcc----cCCCCEEEEEccCChHHH
Q 029986 35 KMLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIV--ISD-VHMPDMDGFKLHEQVGL----EMDLPVIMMSVDGCTQDV 105 (184)
Q Consensus 35 ~~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlv--ilD-~~l~~~~g~~l~~~l~~----~~~~~iIi~~~~~~~~~~ 105 (184)
+.|+..|. .++.+.+..+++-... .+.+.| ++. +.-.+.+|+++++++.. ...-.-|+.++-.+...+
T Consensus 97 ~~L~~~GI~vn~T~vfs~~Qa~~Aa~---aGa~yIspyvgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILaAS~r~~~~v 173 (220)
T PRK12655 97 KKLKKEGIPTLGTAVYSAAQGLLAAL---AGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAPESMVLAASFKTPRQA 173 (220)
T ss_pred HHHHHCCCceeEeEecCHHHHHHHHH---cCCeEEEeecchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEEEecCCHHHH
Confidence 34666565 3445667777754443 223322 221 12236689998887732 212234455677788999
Q ss_pred HHHHHcCCCce
Q 029986 106 MKGVTHGACNY 116 (184)
Q Consensus 106 ~~a~~~ga~~~ 116 (184)
.+++..|++.+
T Consensus 174 ~~~~~~G~d~v 184 (220)
T PRK12655 174 LDCLLAGCQSI 184 (220)
T ss_pred HHHHHcCCCEE
Confidence 99999999855
No 484
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=37.87 E-value=2.1e+02 Score=24.17 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEC----CHHHHHHHHHh-cCCCccEEEEeCCCCCC-CHHHHHHHhcccCCCCEEEEEccC
Q 029986 28 IWLRILEKMLRKCLYEVTKCN----RAEIALDMLRM-SKNGYDIVISDVHMPDM-DGFKLHEQVGLEMDLPVIMMSVDG 100 (184)
Q Consensus 28 ~~~~~l~~~L~~~~~~v~~~~----~~~~~~~~l~~-~~~~~dlvilD~~l~~~-~g~~l~~~l~~~~~~~iIi~~~~~ 100 (184)
..++.+.+.|+..++++.... +.+++.+.+.. ....+|.+|+-. +.. .+-..+.-++ ..+.|+++++.+.
T Consensus 23 ~~~~~~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~--~tf~~~~~~~~~~~-~~~~Pvll~a~~~ 98 (452)
T cd00578 23 EYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWM--HTFGPAKMWIAGLS-ELRKPVLLLATQF 98 (452)
T ss_pred HHHHHHHHHHhcCCceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcc--cccccHHHHHHHHH-hcCCCEEEEeCCC
Confidence 355566777776677776444 44444433321 133689998743 332 2222333332 3578999998765
No 485
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.82 E-value=77 Score=25.25 Aligned_cols=58 Identities=24% Similarity=0.253 Sum_probs=44.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~ 76 (184)
.+.+|+|+......-.-|..+|.+.+.+|..+++...-+...- ...|+|+.-..-|+.
T Consensus 154 ~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~l~~~~---~~ADIvIsAvGkp~~ 211 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLPAVT---RRADVLVVAVGRPHL 211 (287)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCCHHHHH---hhCCEEEEecCCcCc
Confidence 5779999999999999999999988888887776554333322 237999998866653
No 486
>PRK14099 glycogen synthase; Provisional
Probab=37.73 E-value=2.6e+02 Score=23.89 Aligned_cols=110 Identities=11% Similarity=0.140 Sum_probs=55.5
Q ss_pred CeEEEEeC-CHHHHHHHHHHHHhcCCeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEE
Q 029986 18 LRVLVVDD-DPIWLRILEKMLRKCLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 18 ~~Ilivdd-~~~~~~~l~~~L~~~~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi 95 (184)
++++|+.+ ++...+.++.+.+..+-.+ ....-.++....+. ...|++++-.. .+.-|...++.++ ..+|+|+
T Consensus 325 ~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~---a~aDifv~PS~-~E~fGl~~lEAma--~G~ppVv 398 (485)
T PRK14099 325 AQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQ---AGADALLVPSR-FEPCGLTQLCALR--YGAVPVV 398 (485)
T ss_pred cEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHH---hcCCEEEECCc-cCCCcHHHHHHHH--CCCCcEE
Confidence 45555554 3344555555554433222 22222222233332 22588887543 3555666666553 3444444
Q ss_pred EEccCChHHHHHHH----HcC-CCceEeCCCCHHHHHHHHHHH
Q 029986 96 MSVDGCTQDVMKGV----THG-ACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 96 ~~~~~~~~~~~~a~----~~g-a~~~l~kP~~~~~l~~~l~~~ 133 (184)
-....-.+.+...- ..| ..+|+..|.+.++|.+++..+
T Consensus 399 s~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a 441 (485)
T PRK14099 399 ARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKT 441 (485)
T ss_pred eCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHH
Confidence 32222222222110 012 578999999999999998863
No 487
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.67 E-value=2.6e+02 Score=23.83 Aligned_cols=101 Identities=12% Similarity=0.041 Sum_probs=59.4
Q ss_pred EeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCC----HHHHHHHhc-ccCCCCEEEEE
Q 029986 23 VDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD----GFKLHEQVG-LEMDLPVIMMS 97 (184)
Q Consensus 23 vdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~----g~~l~~~l~-~~~~~~iIi~~ 97 (184)
|--|..-.+.|...|...||. ....+ ....|++|++..-=..+ .+..+..++ ..++..|++..
T Consensus 12 C~~N~~DSe~m~~~L~~~G~~-~~~~~-----------~~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~p~~~iiVtG 79 (437)
T COG0621 12 CQMNLYDSERMAGLLEAAGYE-ELVED-----------PEEADVVIINTCAVREKAEQKVRSAIGELKKLKPDAKIIVTG 79 (437)
T ss_pred CCccHHHHHHHHHHHHHcCCc-cccCC-----------cccCCEEEEecCeeeehHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 445666777888888888875 11111 23479999988543332 233444443 23444455443
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
..+... -.-...+.-.|.+.-|-....+.++++.+..+
T Consensus 80 C~aq~~-~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~~ 117 (437)
T COG0621 80 CLAQAE-EEILERAPEVDIVLGPQNKERLPEAIEKALRG 117 (437)
T ss_pred CccccC-HHHHhhCCCceEEECCccHHHHHHHHHHHhhc
Confidence 332222 22233344467888999999999999988654
No 488
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=37.64 E-value=2e+02 Score=22.43 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=63.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEEC--CHHHHHHHHHhcCCCccEEEEeCCC-CCCCHHHHHHHhcccCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCN--RAEIALDMLRMSKNGYDIVISDVHM-PDMDGFKLHEQVGLEMDL 91 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~--~~~~~~~~l~~~~~~~dlvilD~~l-~~~~g~~l~~~l~~~~~~ 91 (184)
..+++++.+.+. ...+.+.++..+. .|.... +.++...++. . .|++++-... ...-|..+++.+. ..+
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~--~--ad~~i~ps~~~~e~~g~~~~Ea~~--~g~ 290 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLA--A--CDVFVFPSVERSEAFGIVLLEAMA--FGK 290 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHH--h--CCEEEeCCcccccccchHHHHHHH--cCC
Confidence 456777776543 3345555544332 233322 3344455544 2 5787764322 2344666777663 367
Q ss_pred CEEEEEccCChHHHHHHHH-cCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 92 PVIMMSVDGCTQDVMKGVT-HGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~-~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
|+|..-.....+ ... .|..+++..+-+.+++.+.+..++..
T Consensus 291 Pvi~~~~~~~~~----~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 291 PVISTEIGTGGS----YVNLHGVTGLVVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred CEEecCCCCchh----HHhhCCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 887642222222 233 37888999999999999999998763
No 489
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=37.62 E-value=1.9e+02 Score=22.27 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCC-ccEEEEeCCCCCC-C--HHHHHHHhcccCCCCEEEEEccCChHHHHHHHHc-----C-CCceEe
Q 029986 50 AEIALDMLRMSKNG-YDIVISDVHMPDM-D--GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTH-----G-ACNYLL 118 (184)
Q Consensus 50 ~~~~~~~l~~~~~~-~dlvilD~~l~~~-~--g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~-----g-a~~~l~ 118 (184)
..+.++.+. +.+ -.+++.|+.--++ . .+++++.+....+.|+|.-..-.+.+....+.+. | +++.+.
T Consensus 146 ~~e~~~~~~--~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gviv 222 (241)
T PRK14114 146 PVSLLKRLK--EYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIV 222 (241)
T ss_pred HHHHHHHHH--hcCCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEE
Confidence 445555554 222 3788888855442 3 3678888876678899988777778888888776 5 777764
No 490
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.61 E-value=80 Score=25.24 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=44.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~ 76 (184)
.+.+|+|+......-.-|..+|.+.+.+|..+++...-+...- ...|+++.-..-|+.
T Consensus 159 ~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~~~~---~~ADIvVsAvGkp~~ 216 (294)
T PRK14187 159 SGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYC---SKADILVAAVGIPNF 216 (294)
T ss_pred CCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCHHHHH---hhCCEEEEccCCcCc
Confidence 4779999999999999999999988999988876444333321 236999998866654
No 491
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=37.60 E-value=1.8e+02 Score=22.00 Aligned_cols=80 Identities=25% Similarity=0.166 Sum_probs=49.8
Q ss_pred HHHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEE--EeC-CCCCCCHHHHHHHhcc----c-CCCCEEEEEccCChHH
Q 029986 35 KMLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVI--SDV-HMPDMDGFKLHEQVGL----E-MDLPVIMMSVDGCTQD 104 (184)
Q Consensus 35 ~~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvi--lD~-~l~~~~g~~l~~~l~~----~-~~~~iIi~~~~~~~~~ 104 (184)
+.|+..|. .++.+.+..+++-.... +++.|= +.- .-.+.+|+++++.+.. . .+++ |+.++-.+...
T Consensus 95 ~~L~~~Gi~v~~T~vfs~~Qa~~Aa~a---Ga~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tk-IlaAS~r~~~~ 170 (213)
T TIGR00875 95 KILKKEGIKTNVTLVFSAAQALLAAKA---GATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTE-VIAASVRHPRH 170 (213)
T ss_pred HHHHHCCCceeEEEecCHHHHHHHHHc---CCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCE-EEEeccCCHHH
Confidence 34666564 44566677777776652 344332 211 1124689998887732 2 3455 55677888999
Q ss_pred HHHHHHcCCCceEe
Q 029986 105 VMKGVTHGACNYLL 118 (184)
Q Consensus 105 ~~~a~~~ga~~~l~ 118 (184)
+.++...|++.+-.
T Consensus 171 v~~~~~~G~d~vTi 184 (213)
T TIGR00875 171 VLEAALIGADIATM 184 (213)
T ss_pred HHHHHHcCCCEEEc
Confidence 99999999995544
No 492
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=37.55 E-value=2.5e+02 Score=23.64 Aligned_cols=98 Identities=11% Similarity=0.071 Sum_probs=59.1
Q ss_pred EeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCH----HHH---HHHhcc-cCCCCEE
Q 029986 23 VDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG----FKL---HEQVGL-EMDLPVI 94 (184)
Q Consensus 23 vdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g----~~l---~~~l~~-~~~~~iI 94 (184)
|--|..-.+.|...|...||.+... ...+|+++++..--..+. +.. ++.+++ .+..+||
T Consensus 13 C~~N~~ds~~~~~~l~~~g~~~~~~-------------~~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vv 79 (444)
T PRK14325 13 CQMNEYDSSKMADLLGAEGYELTDD-------------PEEADLILLNTCSIREKAQEKVFSELGRWRKLKEKNPDLIIG 79 (444)
T ss_pred CCCcHHHHHHHHHHHHHCcCEECCC-------------cCCCCEEEEEcceeeehHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 4567788888999999889887631 123799999875433322 222 233333 3556665
Q ss_pred EEEccCChHHHHHHHH-cCCCceEeCCCCHHHHHHHHHHHH
Q 029986 95 MMSVDGCTQDVMKGVT-HGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~-~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
+-..... .....+++ ....||+..+-....+.+.+..+.
T Consensus 80 vgGc~as-~~~ee~~~~~~~vD~vv~~e~~~~~~~ll~~~~ 119 (444)
T PRK14325 80 VGGCVAQ-QEGEEILKRAPYVDIVFGPQTLHRLPEMIARAR 119 (444)
T ss_pred EECchhc-cCHHHHHhhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 5443222 22233343 444568888888888888877663
No 493
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=37.43 E-value=2.2e+02 Score=22.98 Aligned_cols=99 Identities=23% Similarity=0.321 Sum_probs=53.9
Q ss_pred CCeEEEEeC---CHHHHHHHHHHHHhcC--CeEE--EECCHHHHHHHHHhcCCCccEEEEeCCC-----C------CCCH
Q 029986 17 GLRVLVVDD---DPIWLRILEKMLRKCL--YEVT--KCNRAEIALDMLRMSKNGYDIVISDVHM-----P------DMDG 78 (184)
Q Consensus 17 ~~~Ilivdd---~~~~~~~l~~~L~~~~--~~v~--~~~~~~~~~~~l~~~~~~~dlvilD~~l-----~------~~~g 78 (184)
+..+++++- ++.....+.+.+++.+ ..+. .+.+.+.+..+.. .+.|.|.+...- . +...
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~---aGaD~I~vg~g~G~~~~t~~~~g~g~p~ 182 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLID---AGADGVKVGIGPGSICTTRIVTGVGVPQ 182 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHh---cCCCEEEECCCCCcCcccceeCCCCCCH
Confidence 445666663 2222222233344332 3333 4566677766654 568988873210 0 0112
Q ss_pred HHHHHHhc---ccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 79 FKLHEQVG---LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 79 ~~l~~~l~---~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+.++..+. ...++|||.-..-.+...+.+++.+||+....
T Consensus 183 ~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 183 ATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 23333332 12357887655666788999999999998765
No 494
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=37.23 E-value=1.1e+02 Score=24.10 Aligned_cols=31 Identities=6% Similarity=-0.014 Sum_probs=22.7
Q ss_pred CeEEEEe--CCHHHHHHHHHHHHhcCCeEEEEC
Q 029986 18 LRVLVVD--DDPIWLRILEKMLRKCLYEVTKCN 48 (184)
Q Consensus 18 ~~Ilivd--d~~~~~~~l~~~L~~~~~~v~~~~ 48 (184)
|+++|+. ..-...+.+...+++.|+++..+.
T Consensus 1 m~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~ 33 (300)
T PRK10446 1 MKIAILSRDGTLYSCKRLREAAIQRGHLVEILD 33 (300)
T ss_pred CeEEEEecCCcchhHHHHHHHHHHcCCeEEEEe
Confidence 3566665 444566788888999999988775
No 495
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=37.19 E-value=1.7e+02 Score=21.49 Aligned_cols=67 Identities=18% Similarity=0.014 Sum_probs=42.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCe--EE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHh
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYE--VT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~--v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
+|..||.++...+.++.-++..++. +. ...+....+..+......+|+|++|--.......++++.+
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l 143 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELC 143 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHH
Confidence 7999999999999998888776543 22 3444444443332112237999999765544445556655
No 496
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=37.16 E-value=2.5e+02 Score=23.59 Aligned_cols=99 Identities=9% Similarity=-0.004 Sum_probs=55.7
Q ss_pred EeCCHHHHHHHHHHHHhc-CCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCC----HHHHH---HHhcc-cCCCCE
Q 029986 23 VDDDPIWLRILEKMLRKC-LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMD----GFKLH---EQVGL-EMDLPV 93 (184)
Q Consensus 23 vdd~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~----g~~l~---~~l~~-~~~~~i 93 (184)
|--|..-.+.|...|... ||.+... ...+|+++++..--... ....+ ++++. .++.+|
T Consensus 9 C~~N~~dse~~~~~l~~~~G~~~~~~-------------~~~aDv~iiNTC~v~~~a~~k~~~~i~~~~~~k~~~~~~~i 75 (438)
T TIGR01574 9 CQMNVRDSEHMAALLTAKEGYALTED-------------AKEADVLLINTCSVREKAEHKVFGELGGFKKLKKKNPDLII 75 (438)
T ss_pred CCCcHHHHHHHHHHHHhcCCcEECCC-------------cccCCEEEEeccCeechHHHHHHHHHHHHHHHHhhCCCcEE
Confidence 445667778888888888 8877631 12379999987543322 22333 33332 244445
Q ss_pred EEEEccCChHHHHHHHH-cCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 94 IMMSVDGCTQDVMKGVT-HGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~-~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
++....... ....... ..-.|++.-+-....+...+.....
T Consensus 76 vv~GC~a~~-~~~~~~~~~~~vd~v~g~~~~~~i~~~~~~~~~ 117 (438)
T TIGR01574 76 GVCGCMASH-LGNEIFQRAPYVDFVFGTRNIHRLPQAIKTPLT 117 (438)
T ss_pred EEeCccccc-cHHHHHhcCCCCcEEECCCCHHHHHHHHHHHhc
Confidence 444333222 2223332 2334466778888888887776653
No 497
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=37.04 E-value=1.5e+02 Score=21.08 Aligned_cols=83 Identities=20% Similarity=0.207 Sum_probs=46.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeE---------------EEECCHHHHHHHHHh--cCCCccEEEEeC-CCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEV---------------TKCNRAEIALDMLRM--SKNGYDIVISDV-HMPDMD 77 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v---------------~~~~~~~~~~~~l~~--~~~~~dlvilD~-~l~~~~ 77 (184)
.++|+||+..-....+.+.++|+...+.+ .....+ .....+.. ....||+||+|- +..|..
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~a-t~~~~~~~p~~~~~yd~II~DEcH~~Dp~ 110 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHA-TYGHFLLNPCRLKNYDVIIMDECHFTDPT 110 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHH-HHHHHHHTSSCTTS-SEEEECTTT--SHH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccH-HHHHHhcCcccccCccEEEEeccccCCHH
Confidence 46799999999999999999998753211 111222 23333322 223489999986 444544
Q ss_pred HHHHHHHhc---ccCCCCEEEEEcc
Q 029986 78 GFKLHEQVG---LEMDLPVIMMSVD 99 (184)
Q Consensus 78 g~~l~~~l~---~~~~~~iIi~~~~ 99 (184)
.+.+.-.++ ......+|.++..
T Consensus 111 sIA~rg~l~~~~~~g~~~~i~mTAT 135 (148)
T PF07652_consen 111 SIAARGYLRELAESGEAKVIFMTAT 135 (148)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred HHhhheeHHHhhhccCeeEEEEeCC
Confidence 555544453 2234577777653
No 498
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=36.97 E-value=83 Score=28.54 Aligned_cols=78 Identities=24% Similarity=0.299 Sum_probs=46.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCC-C-C-CCCHHHHHHHhcccCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH-M-P-DMDGFKLHEQVGLEMDLP 92 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~-l-~-~~~g~~l~~~l~~~~~~~ 92 (184)
.+.+|+|||-.......+..+|...|+++....... ..+.+. ...||.||+--. + + +.+..++++..- ..+.|
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~--~~~~DgLILsgGPGsp~d~~~~~~I~~~~-~~~iP 590 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFD--ERRPDLVVLSPGPGRPADFDVAGTIDAAL-ARGLP 590 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-Chhhhh--hcCCCEEEEcCCCCCchhcccHHHHHHHH-HCCCC
Confidence 467899999887778899999999998876654321 112222 234888888311 1 1 112234444432 24678
Q ss_pred EEEEE
Q 029986 93 VIMMS 97 (184)
Q Consensus 93 iIi~~ 97 (184)
++-+-
T Consensus 591 vLGIC 595 (717)
T TIGR01815 591 VFGVC 595 (717)
T ss_pred EEEEC
Confidence 87663
No 499
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=36.91 E-value=1.8e+02 Score=21.90 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHH-------hcccCCCCEEEEEccCChH
Q 029986 31 RILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQ-------VGLEMDLPVIMMSVDGCTQ 103 (184)
Q Consensus 31 ~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~-------l~~~~~~~iIi~~~~~~~~ 103 (184)
..+.+.+++.|..+..+-....-.+.+.......|.+++=..-|+.-|..|.+. +|.......|=+-..-.++
T Consensus 102 ~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ 181 (224)
T KOG3111|consen 102 AELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPS 181 (224)
T ss_pred HHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCcc
Confidence 345556666665554433221111222111234688888778888888777553 3433334444444555677
Q ss_pred HHHHHHHcCCCceEe-----CCCCHHHHHHHHHH
Q 029986 104 DVMKGVTHGACNYLL-----KPIRIKELRNIWQH 132 (184)
Q Consensus 104 ~~~~a~~~ga~~~l~-----kP~~~~~l~~~l~~ 132 (184)
.+-.+.++||+..+. +--+..+....++.
T Consensus 182 ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~ 215 (224)
T KOG3111|consen 182 TIDKAAEAGANMIVAGSAVFGAADPSDVISLLRN 215 (224)
T ss_pred hHHHHHHcCCCEEEecceeecCCCHHHHHHHHHH
Confidence 788899999985542 23345555554443
No 500
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=36.91 E-value=1.4e+02 Score=23.47 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=35.9
Q ss_pred HHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 81 LHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 81 l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
.++.+++. +.. .|.++. .+.+.+..+.+.|++....-|+.+..+...+..+.
T Consensus 173 av~~~R~~~~~~-~IgVev-~t~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~~~ 225 (272)
T cd01573 173 ALARLRATAPEK-KIVVEV-DSLEEALAAAEAGADILQLDKFSPEELAELVPKLR 225 (272)
T ss_pred HHHHHHHhCCCC-eEEEEc-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Confidence 34444432 333 444543 46788888999999988899999999887776553
Done!