Query 029986
Match_columns 184
No_of_seqs 134 out of 1485
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 10:33:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 100.0 2.6E-27 8.8E-32 165.6 15.6 121 14-136 9-133 (134)
2 3gl9_A Response regulator; bet 99.9 4.8E-23 1.6E-27 140.9 17.2 116 18-135 3-121 (122)
3 3f6p_A Transcriptional regulat 99.9 5.1E-23 1.7E-27 140.3 17.1 117 18-136 3-119 (120)
4 3t6k_A Response regulator rece 99.9 1.1E-22 3.9E-27 141.6 16.9 121 17-139 4-127 (136)
5 2lpm_A Two-component response 99.9 6.1E-25 2.1E-29 151.2 2.8 113 17-135 8-121 (123)
6 2r25_B Osmosensing histidine p 99.9 6.6E-22 2.3E-26 137.1 16.9 120 17-136 2-127 (133)
7 3gt7_A Sensor protein; structu 99.9 1.1E-21 3.7E-26 139.4 17.7 121 17-139 7-130 (154)
8 3h1g_A Chemotaxis protein CHEY 99.9 1.8E-21 6.2E-26 134.0 17.3 119 17-136 5-127 (129)
9 3m6m_D Sensory/regulatory prot 99.9 8.4E-22 2.9E-26 138.4 15.8 119 16-136 13-136 (143)
10 1dbw_A Transcriptional regulat 99.9 2.4E-21 8.3E-26 132.7 17.7 120 17-138 3-123 (126)
11 3lua_A Response regulator rece 99.9 6.6E-22 2.2E-26 137.9 13.4 124 16-141 3-132 (140)
12 2a9o_A Response regulator; ess 99.9 3E-21 1E-25 130.6 15.7 117 18-136 2-118 (120)
13 3f6c_A Positive transcription 99.9 7.5E-22 2.6E-26 136.4 12.4 124 18-143 2-127 (134)
14 3hdv_A Response regulator; PSI 99.9 4.4E-21 1.5E-25 132.9 16.2 124 16-140 6-131 (136)
15 3r0j_A Possible two component 99.9 2.2E-21 7.6E-26 148.3 16.0 120 16-137 22-142 (250)
16 4e7p_A Response regulator; DNA 99.9 3.6E-21 1.2E-25 135.8 15.8 126 14-141 17-145 (150)
17 2pl1_A Transcriptional regulat 99.9 7.7E-21 2.6E-25 128.9 16.8 116 18-135 1-117 (121)
18 3eod_A Protein HNR; response r 99.9 4.2E-21 1.4E-25 132.1 15.7 121 16-138 6-128 (130)
19 3rqi_A Response regulator prot 99.9 5.2E-22 1.8E-26 145.2 11.7 117 17-135 7-124 (184)
20 1srr_A SPO0F, sporulation resp 99.9 4.2E-21 1.4E-25 131.0 15.5 117 18-136 4-121 (124)
21 1zgz_A Torcad operon transcrip 99.9 7.3E-21 2.5E-25 129.4 16.5 116 18-135 3-118 (122)
22 3b2n_A Uncharacterized protein 99.9 3.8E-21 1.3E-25 133.1 15.1 122 18-141 4-128 (133)
23 1p6q_A CHEY2; chemotaxis, sign 99.9 4.9E-21 1.7E-25 131.4 15.4 119 16-136 5-127 (129)
24 2qzj_A Two-component response 99.9 4.1E-21 1.4E-25 133.6 15.1 118 17-136 4-121 (136)
25 3crn_A Response regulator rece 99.9 5.1E-21 1.8E-25 132.3 15.4 118 17-136 3-121 (132)
26 1jbe_A Chemotaxis protein CHEY 99.9 1.3E-20 4.3E-25 129.2 17.2 118 16-135 3-124 (128)
27 3q9s_A DNA-binding response re 99.9 3.1E-21 1.1E-25 147.7 15.6 122 17-140 37-158 (249)
28 1xhf_A DYE resistance, aerobic 99.9 8.6E-21 3E-25 129.2 16.1 116 18-135 4-119 (123)
29 3kto_A Response regulator rece 99.9 8.1E-22 2.8E-26 137.0 10.9 123 16-140 5-130 (136)
30 3eul_A Possible nitrate/nitrit 99.9 7.8E-21 2.7E-25 134.3 15.9 129 13-143 11-142 (152)
31 1tmy_A CHEY protein, TMY; chem 99.9 6.9E-21 2.4E-25 129.1 14.9 116 17-134 2-119 (120)
32 3grc_A Sensor protein, kinase; 99.9 1.7E-21 5.8E-26 135.7 12.1 123 16-140 5-131 (140)
33 1i3c_A Response regulator RCP1 99.9 1.4E-20 4.7E-25 132.8 16.9 120 16-135 7-136 (149)
34 3ilh_A Two component response 99.9 9.7E-21 3.3E-25 132.4 16.0 125 16-140 8-143 (146)
35 3hzh_A Chemotaxis response reg 99.9 7E-21 2.4E-25 135.5 15.4 120 16-135 35-156 (157)
36 1mb3_A Cell division response 99.9 6.3E-21 2.2E-25 129.9 14.4 117 18-136 2-121 (124)
37 3h5i_A Response regulator/sens 99.9 3.7E-21 1.2E-25 134.3 13.5 119 17-136 5-124 (140)
38 3jte_A Response regulator rece 99.9 2.2E-20 7.6E-25 130.4 17.4 122 17-138 3-125 (143)
39 3lte_A Response regulator; str 99.9 1.7E-20 5.7E-25 129.2 16.1 122 16-139 5-128 (132)
40 3hv2_A Response regulator/HD d 99.9 1.5E-20 5.2E-25 133.0 16.2 120 15-136 12-133 (153)
41 3cnb_A DNA-binding response re 99.9 2.2E-20 7.5E-25 130.1 16.8 123 16-140 7-134 (143)
42 3heb_A Response regulator rece 99.9 1.9E-20 6.4E-25 132.3 16.6 121 16-136 3-135 (152)
43 3mm4_A Histidine kinase homolo 99.9 7.4E-21 2.5E-25 141.7 15.1 122 15-138 59-198 (206)
44 3kht_A Response regulator; PSI 99.9 1.7E-20 5.8E-25 131.3 15.9 118 17-136 5-128 (144)
45 3hdg_A Uncharacterized protein 99.9 5.3E-21 1.8E-25 132.7 13.1 120 17-138 7-127 (137)
46 3nhm_A Response regulator; pro 99.9 5.7E-21 2E-25 131.8 13.0 121 16-140 3-126 (133)
47 3i42_A Response regulator rece 99.9 4.4E-21 1.5E-25 131.5 12.2 118 17-137 3-123 (127)
48 1zh2_A KDP operon transcriptio 99.9 8.2E-21 2.8E-25 128.7 13.4 117 18-136 2-118 (121)
49 1mvo_A PHOP response regulator 99.9 2E-20 6.9E-25 129.5 15.4 120 17-138 3-123 (136)
50 1k68_A Phytochrome response re 99.9 3.5E-20 1.2E-24 128.4 16.5 120 17-136 2-131 (140)
51 2jba_A Phosphate regulon trans 99.9 3.6E-21 1.2E-25 131.7 11.1 119 18-138 3-124 (127)
52 1dz3_A Stage 0 sporulation pro 99.9 1.3E-20 4.5E-25 129.7 13.7 119 18-138 3-125 (130)
53 3n0r_A Response regulator; sig 99.9 2E-21 6.7E-26 151.9 10.6 118 17-138 160-279 (286)
54 2qr3_A Two-component system re 99.9 3.2E-20 1.1E-24 128.9 15.7 123 17-141 3-131 (140)
55 4dad_A Putative pilus assembly 99.9 7.5E-21 2.5E-25 133.4 12.4 124 14-138 17-143 (146)
56 1dcf_A ETR1 protein; beta-alph 99.9 4E-20 1.4E-24 128.2 15.8 121 16-139 6-132 (136)
57 2qxy_A Response regulator; reg 99.9 3.1E-20 1E-24 129.6 15.3 122 16-140 3-125 (142)
58 3snk_A Response regulator CHEY 99.9 1.1E-21 3.6E-26 136.2 7.6 119 16-136 13-133 (135)
59 1a04_A Nitrate/nitrite respons 99.9 3.1E-20 1.1E-24 138.5 16.1 125 16-142 4-131 (215)
60 3c3m_A Response regulator rece 99.9 4.7E-20 1.6E-24 128.3 15.8 119 18-138 4-125 (138)
61 1k66_A Phytochrome response re 99.9 6.6E-20 2.3E-24 128.4 16.6 121 16-136 5-138 (149)
62 3cg0_A Response regulator rece 99.8 2E-20 6.9E-25 130.0 13.2 121 16-138 8-130 (140)
63 3cfy_A Putative LUXO repressor 99.8 2.6E-20 8.8E-25 129.7 13.5 117 18-136 5-122 (137)
64 3luf_A Two-component system re 99.8 3.4E-20 1.2E-24 142.9 15.4 120 16-136 123-245 (259)
65 1s8n_A Putative antiterminator 99.8 2.4E-20 8.3E-25 138.3 13.9 118 17-136 13-131 (205)
66 2zay_A Response regulator rece 99.8 3.5E-20 1.2E-24 130.0 13.7 119 16-136 7-128 (147)
67 3cz5_A Two-component response 99.8 8.6E-20 2.9E-24 129.0 15.5 123 17-141 5-130 (153)
68 1yio_A Response regulatory pro 99.8 3.1E-20 1E-24 137.8 13.8 118 17-136 4-122 (208)
69 1kgs_A DRRD, DNA binding respo 99.8 4.2E-20 1.4E-24 138.5 14.5 122 17-140 2-124 (225)
70 3kcn_A Adenylate cyclase homol 99.8 9.3E-20 3.2E-24 128.7 14.9 119 16-136 3-123 (151)
71 3a10_A Response regulator; pho 99.8 6.4E-20 2.2E-24 123.6 13.3 113 18-134 2-115 (116)
72 2rjn_A Response regulator rece 99.8 2.2E-19 7.6E-24 127.0 16.6 119 16-136 6-126 (154)
73 2ayx_A Sensor kinase protein R 99.8 1.3E-19 4.4E-24 139.2 15.9 118 16-135 128-246 (254)
74 2qvg_A Two component response 99.8 2.6E-19 9E-24 124.8 16.1 122 16-137 6-136 (143)
75 2oqr_A Sensory transduction pr 99.8 9.2E-20 3.1E-24 137.2 14.7 120 17-138 4-123 (230)
76 3dzd_A Transcriptional regulat 99.8 2.5E-20 8.6E-25 150.4 12.4 117 19-137 2-119 (368)
77 3n53_A Response regulator rece 99.8 2E-20 6.9E-25 130.3 10.3 120 17-139 3-125 (140)
78 2qsj_A DNA-binding response re 99.8 9.8E-20 3.4E-24 128.8 13.9 124 17-142 3-130 (154)
79 3cg4_A Response regulator rece 99.8 4.6E-20 1.6E-24 128.6 12.0 119 16-136 6-127 (142)
80 1qkk_A DCTD, C4-dicarboxylate 99.8 1.9E-19 6.4E-24 127.6 15.3 119 16-136 2-121 (155)
81 2gwr_A DNA-binding response re 99.8 1E-19 3.5E-24 138.0 14.0 120 18-139 6-125 (238)
82 3cu5_A Two component transcrip 99.8 9.1E-20 3.1E-24 127.5 12.5 116 18-135 3-122 (141)
83 2gkg_A Response regulator homo 99.8 2E-19 6.9E-24 122.5 13.9 116 18-136 6-125 (127)
84 3eqz_A Response regulator; str 99.8 3.9E-20 1.3E-24 127.6 10.3 122 17-141 3-130 (135)
85 3kyj_B CHEY6 protein, putative 99.8 6.4E-20 2.2E-24 128.6 11.2 120 14-134 10-143 (145)
86 3c97_A Signal transduction his 99.8 1.7E-19 5.7E-24 125.7 12.7 121 17-142 10-136 (140)
87 1ys7_A Transcriptional regulat 99.8 1.2E-19 4.1E-24 136.7 12.7 120 17-138 7-127 (233)
88 1ny5_A Transcriptional regulat 99.8 3E-19 1E-23 145.0 15.0 116 18-135 1-117 (387)
89 2pln_A HP1043, response regula 99.8 9.2E-19 3.1E-23 121.4 15.5 119 12-136 13-133 (137)
90 2rdm_A Response regulator rece 99.8 1.2E-18 4.2E-23 119.7 15.9 121 17-141 5-128 (132)
91 2jk1_A HUPR, hydrogenase trans 99.8 7.1E-19 2.4E-23 122.4 14.7 115 19-136 3-119 (139)
92 3eq2_A Probable two-component 99.8 1.6E-19 5.4E-24 146.6 12.5 117 17-135 5-123 (394)
93 3t8y_A CHEB, chemotaxis respon 99.8 7.9E-19 2.7E-23 125.9 14.7 119 17-137 25-156 (164)
94 3klo_A Transcriptional regulat 99.8 3.8E-20 1.3E-24 139.3 7.2 124 16-141 6-134 (225)
95 2j48_A Two-component sensor ki 99.8 4.6E-19 1.6E-23 119.0 11.8 113 18-135 2-117 (119)
96 1w25_A Stalked-cell differenti 99.8 7E-19 2.4E-23 145.2 15.1 116 18-135 2-120 (459)
97 3c3w_A Two component transcrip 99.8 5.5E-20 1.9E-24 138.5 6.2 121 18-140 2-125 (225)
98 1p2f_A Response regulator; DRR 99.8 1E-18 3.6E-23 130.6 12.9 116 18-138 3-119 (220)
99 2qv0_A Protein MRKE; structura 99.8 6.4E-18 2.2E-22 117.8 15.8 117 16-136 8-127 (143)
100 2hqr_A Putative transcriptiona 99.8 3.7E-18 1.3E-22 127.9 14.4 114 18-137 1-116 (223)
101 3bre_A Probable two-component 99.8 2.4E-18 8.1E-23 137.6 12.0 115 17-133 18-136 (358)
102 2b4a_A BH3024; flavodoxin-like 99.8 2.7E-18 9.3E-23 119.1 10.3 116 15-136 13-131 (138)
103 1dc7_A NTRC, nitrogen regulati 99.8 3E-20 1E-24 126.3 0.2 118 17-136 3-121 (124)
104 1qo0_D AMIR; binding protein, 99.8 1.4E-18 4.9E-23 127.8 9.2 114 16-136 11-125 (196)
105 3sy8_A ROCR; TIM barrel phosph 99.8 2.1E-18 7.2E-23 140.5 10.5 121 17-138 3-130 (400)
106 1a2o_A CHEB methylesterase; ba 99.7 6.7E-17 2.3E-21 129.5 14.4 119 17-137 3-134 (349)
107 3luf_A Two-component system re 99.7 6E-17 2.1E-21 124.6 8.6 102 18-123 5-107 (259)
108 2vyc_A Biodegradative arginine 99.7 1.6E-16 5.6E-21 138.5 9.1 117 18-136 1-133 (755)
109 3cwo_X Beta/alpha-barrel prote 99.1 1E-10 3.4E-15 87.6 4.7 92 42-135 6-100 (237)
110 1w25_A Stalked-cell differenti 99.0 1.7E-08 5.8E-13 83.0 17.0 115 17-135 152-269 (459)
111 3q7r_A Transcriptional regulat 97.8 0.00034 1.2E-08 45.0 9.2 106 19-137 14-119 (121)
112 2ayx_A Sensor kinase protein R 97.4 0.00044 1.5E-08 52.3 7.5 97 15-135 9-105 (254)
113 3n75_A LDC, lysine decarboxyla 97.0 0.0013 4.5E-08 57.1 6.5 91 29-124 18-110 (715)
114 2yxb_A Coenzyme B12-dependent 96.3 0.16 5.5E-06 35.5 12.7 116 17-135 18-144 (161)
115 3cwo_X Beta/alpha-barrel prote 96.3 0.039 1.3E-06 40.3 9.7 82 49-131 131-221 (237)
116 1wv2_A Thiazole moeity, thiazo 95.5 0.13 4.5E-06 38.9 9.6 97 33-133 127-235 (265)
117 3q58_A N-acetylmannosamine-6-p 95.1 0.3 1E-05 36.2 10.6 97 18-118 102-209 (229)
118 3fkq_A NTRC-like two-domain pr 94.7 0.083 2.8E-06 42.0 6.9 57 17-75 21-80 (373)
119 3igs_A N-acetylmannosamine-6-p 94.4 0.57 1.9E-05 34.8 10.4 88 27-118 115-209 (232)
120 1r8j_A KAIA; circadian clock p 93.6 1.2 4.2E-05 33.6 10.6 85 13-99 5-90 (289)
121 1ccw_A Protein (glutamate muta 93.2 1.3 4.4E-05 29.9 9.9 106 25-133 15-133 (137)
122 1qop_A Tryptophan synthase alp 91.7 0.73 2.5E-05 34.9 7.6 76 61-136 42-146 (268)
123 2ekc_A AQ_1548, tryptophan syn 91.6 0.95 3.3E-05 34.2 8.1 88 49-136 29-146 (262)
124 2htm_A Thiazole biosynthesis p 91.2 0.46 1.6E-05 36.0 5.8 96 34-133 117-226 (268)
125 2l69_A Rossmann 2X3 fold prote 90.8 2 6.9E-05 27.1 8.9 113 18-136 3-123 (134)
126 3o63_A Probable thiamine-phosp 90.3 3.9 0.00013 30.5 10.4 85 45-133 140-238 (243)
127 3ezx_A MMCP 1, monomethylamine 89.9 2.3 7.8E-05 31.1 8.6 97 17-118 92-202 (215)
128 2i2x_B MTAC, methyltransferase 89.1 5.7 0.00019 29.7 11.4 111 17-135 123-243 (258)
129 1y80_A Predicted cobalamin bin 88.9 3.4 0.00012 29.8 9.0 97 17-118 88-196 (210)
130 1yad_A Regulatory protein TENI 87.9 4.4 0.00015 29.3 9.0 68 46-117 116-190 (221)
131 3lab_A Putative KDPG (2-keto-3 87.7 2.1 7.3E-05 31.4 7.0 60 72-132 45-104 (217)
132 3vnd_A TSA, tryptophan synthas 87.0 0.82 2.8E-05 34.7 4.6 58 79-136 83-147 (267)
133 3qja_A IGPS, indole-3-glycerol 85.7 9.8 0.00033 28.8 11.1 87 29-118 150-241 (272)
134 3nav_A Tryptophan synthase alp 85.7 1.2 4E-05 34.0 4.9 58 78-135 84-148 (271)
135 2gek_A Phosphatidylinositol ma 85.3 4.5 0.00015 31.4 8.5 108 17-136 240-349 (406)
136 1ujp_A Tryptophan synthase alp 84.3 1.6 5.4E-05 33.2 5.1 86 49-135 28-142 (271)
137 2xij_A Methylmalonyl-COA mutas 84.1 13 0.00044 32.5 11.1 116 17-134 604-729 (762)
138 1geq_A Tryptophan synthase alp 83.5 5.3 0.00018 29.3 7.7 56 78-133 68-129 (248)
139 1qv9_A F420-dependent methylen 83.3 2.5 8.5E-05 31.5 5.5 60 61-121 62-121 (283)
140 1req_A Methylmalonyl-COA mutas 83.3 15 0.0005 32.0 11.1 116 17-134 596-721 (727)
141 1xi3_A Thiamine phosphate pyro 81.8 8.5 0.00029 27.3 8.1 68 46-117 114-188 (215)
142 1rd5_A Tryptophan synthase alp 81.5 2.3 8E-05 31.8 5.1 57 78-135 82-141 (262)
143 4e38_A Keto-hydroxyglutarate-a 81.4 6.7 0.00023 29.0 7.4 97 33-132 27-125 (232)
144 3qz6_A HPCH/HPAI aldolase; str 80.6 16 0.00054 27.4 9.9 81 51-133 27-110 (261)
145 3fro_A GLGA glycogen synthase; 79.8 19 0.00066 27.9 11.6 107 16-135 284-394 (439)
146 3kp1_A D-ornithine aminomutase 79.5 17 0.00059 31.2 9.9 113 17-134 602-733 (763)
147 2bfw_A GLGA glycogen synthase; 79.5 13 0.00044 25.6 11.5 107 16-135 69-179 (200)
148 3rht_A (gatase1)-like protein; 78.5 1.3 4.3E-05 33.5 2.6 50 18-71 5-58 (259)
149 1z0s_A Probable inorganic poly 78.4 2.1 7E-05 32.7 3.8 93 17-135 29-122 (278)
150 1thf_D HISF protein; thermophI 78.0 18 0.00061 26.5 10.0 80 50-131 153-242 (253)
151 2xci_A KDO-transferase, 3-deox 77.1 10 0.00036 29.6 7.8 111 17-136 225-346 (374)
152 3okp_A GDP-mannose-dependent a 77.0 12 0.00041 28.7 8.1 107 17-135 229-343 (394)
153 2w6r_A Imidazole glycerol phos 76.5 14 0.00047 27.3 8.0 67 51-119 159-229 (266)
154 1h5y_A HISF; histidine biosynt 76.4 15 0.00052 26.5 8.2 80 50-131 156-245 (253)
155 3bo9_A Putative nitroalkan dio 76.4 24 0.00083 27.2 10.8 80 35-117 118-203 (326)
156 1xm3_A Thiazole biosynthesis p 76.3 20 0.00069 26.8 8.9 75 41-118 126-206 (264)
157 3ffs_A Inosine-5-monophosphate 75.8 29 0.001 27.8 11.4 97 18-117 157-273 (400)
158 1xrs_B D-lysine 5,6-aminomutas 75.2 24 0.00082 26.6 10.9 111 17-132 120-254 (262)
159 2lnd_A De novo designed protei 75.1 12 0.0004 22.9 7.0 92 20-137 5-102 (112)
160 3c48_A Predicted glycosyltrans 73.5 30 0.001 27.0 10.0 108 17-135 276-390 (438)
161 2tps_A Protein (thiamin phosph 73.4 22 0.00074 25.4 8.2 68 46-117 122-198 (227)
162 1ka9_F Imidazole glycerol phos 73.2 24 0.00083 25.7 8.6 53 79-131 185-243 (252)
163 2w6r_A Imidazole glycerol phos 72.8 15 0.00051 27.2 7.4 69 49-119 31-103 (266)
164 3fwz_A Inner membrane protein 72.6 18 0.0006 23.8 8.3 93 17-118 30-124 (140)
165 4fo4_A Inosine 5'-monophosphat 72.5 34 0.0012 27.0 11.5 98 18-118 121-239 (366)
166 2f9f_A First mannosyl transfer 72.4 20 0.00068 24.4 9.7 108 17-137 50-163 (177)
167 2r60_A Glycosyl transferase, g 72.0 24 0.00081 28.4 8.9 99 30-135 321-423 (499)
168 2i2c_A Probable inorganic poly 71.9 26 0.00088 26.2 8.5 88 18-138 1-95 (272)
169 3l9w_A Glutathione-regulated p 71.5 21 0.00071 28.7 8.3 92 17-118 27-121 (413)
170 3o07_A Pyridoxine biosynthesis 71.3 10 0.00036 28.9 6.0 59 78-136 186-251 (291)
171 3vk5_A MOEO5; TIM barrel, tran 71.0 10 0.00036 28.9 6.0 57 63-120 199-257 (286)
172 3inp_A D-ribulose-phosphate 3- 71.0 8.9 0.0003 28.6 5.6 86 49-136 41-133 (246)
173 4dzz_A Plasmid partitioning pr 70.7 12 0.0004 26.1 6.1 53 17-72 30-84 (206)
174 2iw1_A Lipopolysaccharide core 70.4 16 0.00055 27.8 7.3 106 17-135 228-336 (374)
175 2gjl_A Hypothetical protein PA 70.4 34 0.0012 26.2 11.9 80 35-117 112-199 (328)
176 3ceu_A Thiamine phosphate pyro 70.1 12 0.0004 26.9 6.0 68 45-117 93-170 (210)
177 2lci_A Protein OR36; structura 69.8 18 0.00061 22.7 6.5 27 19-45 53-79 (134)
178 1tqj_A Ribulose-phosphate 3-ep 69.8 11 0.00038 27.6 5.9 84 49-135 18-110 (230)
179 1vzw_A Phosphoribosyl isomeras 69.7 28 0.00095 25.3 8.2 79 49-129 147-238 (244)
180 2oo3_A Protein involved in cat 69.7 30 0.001 26.3 8.4 68 18-85 114-182 (283)
181 2z6i_A Trans-2-enoyl-ACP reduc 69.1 37 0.0013 26.1 10.8 78 37-117 106-189 (332)
182 2v82_A 2-dehydro-3-deoxy-6-pho 68.8 21 0.00072 25.4 7.2 77 35-118 95-175 (212)
183 3f4w_A Putative hexulose 6 pho 68.4 28 0.00097 24.5 8.3 109 20-131 80-204 (211)
184 3ffs_A Inosine-5-monophosphate 68.1 13 0.00045 29.8 6.4 65 51-118 146-211 (400)
185 2jjm_A Glycosyl transferase, g 68.0 20 0.00067 27.7 7.4 106 18-135 242-349 (394)
186 3khj_A Inosine-5-monophosphate 67.7 43 0.0015 26.3 9.7 96 19-117 119-234 (361)
187 2iuy_A Avigt4, glycosyltransfe 67.6 8.1 0.00028 29.3 5.0 106 18-135 189-307 (342)
188 1rzu_A Glycogen synthase 1; gl 67.4 45 0.0016 26.5 11.2 107 17-134 320-438 (485)
189 1y0e_A Putative N-acetylmannos 66.7 32 0.0011 24.5 9.3 75 41-118 119-203 (223)
190 3l4e_A Uncharacterized peptida 66.3 33 0.0011 24.6 7.7 62 17-86 27-98 (206)
191 4fxs_A Inosine-5'-monophosphat 65.9 29 0.001 28.6 8.2 65 50-118 233-299 (496)
192 3ip3_A Oxidoreductase, putativ 65.6 16 0.00054 28.1 6.3 32 103-134 82-115 (337)
193 4had_A Probable oxidoreductase 65.2 34 0.0012 26.2 8.2 109 14-135 20-135 (350)
194 3bw2_A 2-nitropropane dioxygen 65.2 47 0.0016 25.9 11.7 75 40-117 144-235 (369)
195 3dr5_A Putative O-methyltransf 65.0 17 0.00058 26.2 6.1 68 14-85 78-149 (221)
196 2q5c_A NTRC family transcripti 64.7 35 0.0012 24.2 12.3 120 16-137 3-142 (196)
197 3f4w_A Putative hexulose 6 pho 64.5 4.9 0.00017 28.7 3.0 57 77-133 39-99 (211)
198 2l2q_A PTS system, cellobiose- 64.5 18 0.00061 23.0 5.5 77 15-98 2-84 (109)
199 2p10_A MLL9387 protein; putati 63.9 46 0.0016 25.4 9.5 77 40-119 162-259 (286)
200 2f6u_A GGGPS, (S)-3-O-geranylg 63.8 9.7 0.00033 28.2 4.5 60 52-120 24-85 (234)
201 3bul_A Methionine synthase; tr 63.6 40 0.0014 28.5 8.7 100 17-118 98-210 (579)
202 2y88_A Phosphoribosyl isomeras 63.5 20 0.00069 26.0 6.3 76 51-128 152-240 (244)
203 3tsm_A IGPS, indole-3-glycerol 63.4 46 0.0016 25.1 10.3 86 30-118 158-248 (272)
204 1h5y_A HISF; histidine biosynt 62.9 40 0.0014 24.2 8.2 68 49-118 34-105 (253)
205 3kts_A Glycerol uptake operon 62.7 8.4 0.00029 27.6 3.9 63 51-119 117-179 (192)
206 1zh8_A Oxidoreductase; TM0312, 62.6 50 0.0017 25.3 9.4 48 89-136 81-132 (340)
207 3tha_A Tryptophan synthase alp 62.0 8 0.00027 29.0 3.8 55 79-135 79-139 (252)
208 1geq_A Tryptophan synthase alp 61.9 11 0.00037 27.7 4.5 41 79-119 180-220 (248)
209 1izc_A Macrophomate synthase i 61.6 55 0.0019 25.5 9.2 81 51-133 53-139 (339)
210 3ovp_A Ribulose-phosphate 3-ep 61.2 18 0.00062 26.5 5.6 54 64-118 135-196 (228)
211 3iwt_A 178AA long hypothetical 60.6 33 0.0011 23.7 6.7 45 29-73 41-91 (178)
212 2d00_A V-type ATP synthase sub 60.5 30 0.001 22.1 10.1 76 17-98 3-80 (109)
213 1viz_A PCRB protein homolog; s 60.1 13 0.00045 27.6 4.7 54 61-121 31-86 (240)
214 2v5j_A 2,4-dihydroxyhept-2-ENE 59.4 55 0.0019 24.8 12.0 98 33-133 30-133 (287)
215 1thf_D HISF protein; thermophI 59.2 48 0.0017 24.0 8.5 69 49-119 31-103 (253)
216 3oy2_A Glycosyltransferase B73 59.1 60 0.002 25.0 9.7 107 17-135 215-354 (413)
217 1eep_A Inosine 5'-monophosphat 59.0 65 0.0022 25.5 10.3 87 29-118 181-284 (404)
218 3w01_A Heptaprenylglyceryl pho 58.9 12 0.00041 27.8 4.2 52 61-119 34-87 (235)
219 1yxy_A Putative N-acetylmannos 58.8 48 0.0016 23.8 8.8 74 41-118 133-214 (234)
220 2ixa_A Alpha-N-acetylgalactosa 58.4 70 0.0024 25.6 10.0 113 17-135 20-140 (444)
221 3tdn_A FLR symmetric alpha-bet 58.1 29 0.00098 25.3 6.3 68 49-118 36-107 (247)
222 3usb_A Inosine-5'-monophosphat 57.7 80 0.0027 26.0 11.1 98 18-118 269-387 (511)
223 2vws_A YFAU, 2-keto-3-deoxy su 57.5 57 0.0019 24.3 12.1 82 50-133 28-112 (267)
224 1vgv_A UDP-N-acetylglucosamine 57.2 62 0.0021 24.6 8.9 42 89-135 300-341 (384)
225 3c3y_A Pfomt, O-methyltransfer 57.0 52 0.0018 23.7 8.9 70 14-85 92-167 (237)
226 3khj_A Inosine-5-monophosphate 56.9 35 0.0012 26.8 6.9 65 51-118 107-172 (361)
227 3ovp_A Ribulose-phosphate 3-ep 56.7 14 0.00048 27.1 4.3 86 49-136 18-111 (228)
228 3ajx_A 3-hexulose-6-phosphate 56.7 12 0.0004 26.5 3.9 56 78-133 40-99 (207)
229 3duw_A OMT, O-methyltransferas 56.4 49 0.0017 23.2 9.4 72 12-85 78-153 (223)
230 3beo_A UDP-N-acetylglucosamine 56.1 63 0.0022 24.4 10.8 60 64-136 283-342 (375)
231 4adt_A Pyridoxine biosynthetic 55.8 66 0.0023 24.6 10.6 57 79-135 196-259 (297)
232 3l0g_A Nicotinate-nucleotide p 55.4 69 0.0023 24.6 8.8 90 20-116 181-276 (300)
233 3usb_A Inosine-5'-monophosphat 55.4 48 0.0016 27.4 7.7 56 62-118 267-324 (511)
234 4e5v_A Putative THUA-like prot 55.3 13 0.00045 28.2 4.1 77 16-97 3-93 (281)
235 3paj_A Nicotinate-nucleotide p 55.3 71 0.0024 24.8 9.7 91 20-117 205-301 (320)
236 3ctl_A D-allulose-6-phosphate 54.8 59 0.002 23.7 7.8 87 49-136 14-105 (231)
237 3u81_A Catechol O-methyltransf 54.7 44 0.0015 23.6 6.8 60 14-73 80-144 (221)
238 1ka9_F Imidazole glycerol phos 54.6 19 0.00066 26.2 4.9 68 49-118 32-103 (252)
239 1jvn_A Glutamine, bifunctional 54.6 82 0.0028 26.3 9.1 70 62-131 464-544 (555)
240 3cbg_A O-methyltransferase; cy 54.6 56 0.0019 23.3 8.5 70 14-85 94-168 (232)
241 3gnn_A Nicotinate-nucleotide p 54.4 71 0.0024 24.5 9.7 65 45-116 214-278 (298)
242 1qdl_B Protein (anthranilate s 54.1 6.7 0.00023 27.8 2.2 50 18-69 1-51 (195)
243 4avf_A Inosine-5'-monophosphat 54.0 56 0.0019 26.8 7.9 56 62-118 240-297 (490)
244 1qo2_A Molecule: N-((5-phospho 53.6 35 0.0012 24.7 6.1 78 49-129 145-239 (241)
245 4af0_A Inosine-5'-monophosphat 53.3 43 0.0015 28.1 7.0 56 61-117 291-348 (556)
246 1h1y_A D-ribulose-5-phosphate 53.0 17 0.00058 26.4 4.2 55 63-118 138-200 (228)
247 2l69_A Rossmann 2X3 fold prote 52.8 40 0.0014 21.1 6.3 34 20-53 80-113 (134)
248 3pfn_A NAD kinase; structural 52.2 28 0.00094 27.6 5.6 105 18-141 39-169 (365)
249 2qzs_A Glycogen synthase; glyc 52.1 87 0.003 24.8 11.1 107 17-134 321-439 (485)
250 4gqa_A NAD binding oxidoreduct 51.5 86 0.0029 24.6 10.3 47 89-135 95-145 (412)
251 3r2g_A Inosine 5'-monophosphat 51.1 55 0.0019 25.8 7.1 67 50-118 101-168 (361)
252 4fo4_A Inosine 5'-monophosphat 51.1 51 0.0017 26.0 7.0 65 51-118 110-176 (366)
253 3tqv_A Nicotinate-nucleotide p 50.3 82 0.0028 24.0 9.3 67 44-117 202-268 (287)
254 2kx7_A Sensor-like histidine k 49.9 39 0.0013 22.0 5.0 48 16-71 6-53 (117)
255 1g5t_A COB(I)alamin adenosyltr 49.6 61 0.0021 23.1 6.6 48 61-108 118-170 (196)
256 1dxe_A 2-dehydro-3-deoxy-galac 49.6 76 0.0026 23.4 11.4 99 33-133 10-113 (256)
257 3l0g_A Nicotinate-nucleotide p 49.1 64 0.0022 24.8 7.0 52 81-134 197-249 (300)
258 2fli_A Ribulose-phosphate 3-ep 48.9 53 0.0018 23.2 6.4 54 63-117 131-196 (220)
259 1tqx_A D-ribulose-5-phosphate 48.3 47 0.0016 24.3 6.0 80 36-118 109-200 (227)
260 1rd5_A Tryptophan synthase alp 47.4 30 0.001 25.6 4.9 41 78-118 189-229 (262)
261 3vzx_A Heptaprenylglyceryl pho 47.3 18 0.00063 26.6 3.6 52 61-119 29-82 (228)
262 1jcn_A Inosine monophosphate d 47.2 1.2E+02 0.004 24.9 11.3 84 31-117 285-385 (514)
263 2gjl_A Hypothetical protein PA 47.0 92 0.0032 23.7 7.8 62 49-119 84-145 (328)
264 1v4v_A UDP-N-acetylglucosamine 46.9 92 0.0031 23.6 11.2 102 17-136 230-334 (376)
265 2x6q_A Trehalose-synthase TRET 46.9 97 0.0033 23.9 11.1 106 17-135 262-378 (416)
266 1ujp_A Tryptophan synthase alp 46.7 70 0.0024 24.0 6.9 54 79-134 191-253 (271)
267 3s5p_A Ribose 5-phosphate isom 46.6 71 0.0024 22.2 9.4 37 12-48 16-54 (166)
268 3s83_A Ggdef family protein; s 46.4 66 0.0023 23.4 6.7 97 33-132 144-254 (259)
269 4avf_A Inosine-5'-monophosphat 46.4 1.2E+02 0.0041 24.8 11.9 98 18-118 242-360 (490)
270 3cvo_A Methyltransferase-like 46.1 78 0.0027 22.6 6.8 26 17-42 51-76 (202)
271 1req_B Methylmalonyl-COA mutas 45.9 37 0.0013 29.0 5.7 100 28-132 525-631 (637)
272 2avd_A Catechol-O-methyltransf 45.8 75 0.0026 22.3 8.2 70 14-85 91-165 (229)
273 3tr6_A O-methyltransferase; ce 45.7 75 0.0025 22.2 8.7 72 12-85 84-160 (225)
274 1lst_A Lysine, arginine, ornit 44.6 76 0.0026 22.0 7.7 53 16-71 110-162 (239)
275 3jr2_A Hexulose-6-phosphate sy 44.4 17 0.00059 26.1 3.1 9 66-74 61-69 (218)
276 3u3x_A Oxidoreductase; structu 44.1 1.1E+02 0.0037 23.6 9.4 107 17-136 26-138 (361)
277 4gmf_A Yersiniabactin biosynth 44.0 41 0.0014 26.5 5.5 37 102-138 84-120 (372)
278 2nv1_A Pyridoxal biosynthesis 43.9 28 0.00097 26.5 4.4 41 78-118 195-237 (305)
279 2iuy_A Avigt4, glycosyltransfe 43.2 79 0.0027 23.6 6.9 56 17-74 3-95 (342)
280 2pyy_A Ionotropic glutamate re 43.2 76 0.0026 21.6 7.7 49 16-71 111-159 (228)
281 3rc1_A Sugar 3-ketoreductase; 43.1 1.1E+02 0.0038 23.4 8.8 106 17-136 27-139 (350)
282 1h1y_A D-ribulose-5-phosphate 43.1 44 0.0015 24.1 5.2 58 77-135 51-111 (228)
283 3ot5_A UDP-N-acetylglucosamine 42.6 1.2E+02 0.0042 23.8 10.2 42 89-135 319-360 (403)
284 2j9r_A Thymidine kinase; TK1, 42.2 28 0.00094 25.3 3.9 34 63-97 101-135 (214)
285 1jcn_A Inosine monophosphate d 41.9 97 0.0033 25.4 7.6 56 62-118 266-323 (514)
286 1wbh_A KHG/KDPG aldolase; lyas 41.9 94 0.0032 22.3 6.8 67 62-131 40-106 (214)
287 2yzr_A Pyridoxal biosynthesis 41.8 26 0.0009 27.3 3.8 58 78-135 228-292 (330)
288 3p3b_A Mandelate racemase/muco 41.2 98 0.0034 24.3 7.3 83 49-135 213-303 (392)
289 1o2d_A Alcohol dehydrogenase, 41.2 89 0.003 24.4 7.0 63 18-85 41-117 (371)
290 3h5l_A Putative branched-chain 40.8 1.2E+02 0.0043 23.4 8.6 68 18-88 165-243 (419)
291 3qhp_A Type 1 capsular polysac 40.8 74 0.0025 20.8 10.5 107 16-135 31-139 (166)
292 2f6u_A GGGPS, (S)-3-O-geranylg 40.8 52 0.0018 24.2 5.2 55 65-121 165-220 (234)
293 3tqv_A Nicotinate-nucleotide p 40.5 1.1E+02 0.0039 23.2 7.2 68 65-134 170-240 (287)
294 3h2s_A Putative NADH-flavin re 40.4 58 0.002 22.7 5.4 27 19-45 2-28 (224)
295 1rpx_A Protein (ribulose-phosp 40.1 28 0.00096 25.1 3.7 55 63-118 140-206 (230)
296 3q58_A N-acetylmannosamine-6-p 39.9 1.1E+02 0.0036 22.3 6.9 63 49-117 90-154 (229)
297 1w5q_A Delta-aminolevulinic ac 39.7 30 0.001 26.9 3.8 71 41-115 231-302 (337)
298 2qjg_A Putative aldolase MJ040 39.6 95 0.0032 22.8 6.7 53 61-117 177-235 (273)
299 2rdx_A Mandelate racemase/muco 39.5 1.2E+02 0.0039 23.7 7.5 82 49-135 201-286 (379)
300 3qja_A IGPS, indole-3-glycerol 39.4 1E+02 0.0035 23.0 6.8 56 79-134 102-159 (272)
301 4fyk_A Deoxyribonucleoside 5'- 39.3 90 0.0031 21.3 6.6 103 26-136 17-142 (152)
302 1o4u_A Type II quinolic acid p 39.2 97 0.0033 23.5 6.6 53 81-135 182-236 (285)
303 3cni_A Putative ABC type-2 tra 39.1 65 0.0022 21.5 5.3 53 14-69 7-61 (156)
304 3c6k_A Spermine synthase; sper 38.8 1.2E+02 0.004 24.2 7.2 56 18-73 229-294 (381)
305 3axs_A Probable N(2),N(2)-dime 38.7 63 0.0022 25.7 5.8 51 18-71 78-133 (392)
306 3e2i_A Thymidine kinase; Zn-bi 38.3 23 0.00078 25.9 2.9 78 17-98 56-136 (219)
307 3bfj_A 1,3-propanediol oxidore 38.1 1.1E+02 0.0037 24.0 7.1 63 18-85 34-111 (387)
308 1vhc_A Putative KHG/KDPG aldol 38.0 1.1E+02 0.0039 22.1 7.4 94 35-132 12-108 (224)
309 2agk_A 1-(5-phosphoribosyl)-5- 38.0 49 0.0017 24.6 4.8 77 52-131 162-257 (260)
310 1vrd_A Inosine-5'-monophosphat 37.7 1.3E+02 0.0045 24.4 7.8 65 51-118 239-305 (494)
311 3obk_A Delta-aminolevulinic ac 37.6 29 0.001 27.2 3.5 94 41-140 238-351 (356)
312 3nav_A Tryptophan synthase alp 37.5 1E+02 0.0034 23.2 6.5 98 20-119 129-237 (271)
313 1l6s_A Porphobilinogen synthas 37.3 29 0.00099 26.9 3.4 64 49-115 224-288 (323)
314 3paj_A Nicotinate-nucleotide p 37.2 1.4E+02 0.0049 23.0 7.7 51 81-133 221-272 (320)
315 1xx6_A Thymidine kinase; NESG, 37.2 11 0.00038 26.7 1.1 77 17-97 36-115 (191)
316 2gk3_A Putative cytoplasmic pr 37.2 17 0.00059 27.0 2.2 62 32-99 44-127 (256)
317 2igt_A SAM dependent methyltra 37.1 1.4E+02 0.0048 22.9 7.6 53 19-71 177-233 (332)
318 2c6q_A GMP reductase 2; TIM ba 37.1 78 0.0027 24.7 6.0 55 63-118 132-188 (351)
319 2vvp_A Ribose-5-phosphate isom 37.1 60 0.002 22.5 4.7 32 17-48 3-36 (162)
320 3gjy_A Spermidine synthase; AP 37.1 70 0.0024 24.6 5.6 57 17-75 113-171 (317)
321 1wxx_A TT1595, hypothetical pr 36.7 1.5E+02 0.0051 23.1 8.3 54 18-71 232-287 (382)
322 1vrd_A Inosine-5'-monophosphat 36.5 1.7E+02 0.0058 23.7 9.1 70 45-117 284-367 (494)
323 3he8_A Ribose-5-phosphate isom 36.5 60 0.002 22.2 4.6 30 18-47 1-32 (149)
324 1vlj_A NADH-dependent butanol 36.3 1.6E+02 0.0054 23.3 8.4 63 18-85 44-120 (407)
325 1i1q_B Anthranilate synthase c 36.2 73 0.0025 22.1 5.3 76 18-96 1-82 (192)
326 1o4u_A Type II quinolic acid p 35.8 71 0.0024 24.3 5.4 69 44-117 197-266 (285)
327 1fy2_A Aspartyl dipeptidase; s 35.7 69 0.0024 23.2 5.2 62 17-86 31-98 (229)
328 2yvk_A Methylthioribose-1-phos 35.7 1.5E+02 0.005 23.5 7.4 81 16-99 206-295 (374)
329 1qo2_A Molecule: N-((5-phospho 35.6 45 0.0015 24.1 4.2 39 79-118 63-101 (241)
330 1wl8_A GMP synthase [glutamine 35.6 39 0.0013 23.4 3.8 74 19-96 2-78 (189)
331 4fb5_A Probable oxidoreductase 35.4 94 0.0032 23.8 6.3 49 89-137 93-145 (393)
332 1gox_A (S)-2-hydroxy-acid oxid 35.2 1.6E+02 0.0055 23.0 9.2 85 31-118 215-308 (370)
333 3iwp_A Copper homeostasis prot 35.0 1.5E+02 0.0051 22.6 7.7 85 46-133 45-151 (287)
334 1vc4_A Indole-3-glycerol phosp 34.7 77 0.0026 23.4 5.4 84 31-118 141-235 (254)
335 1qpo_A Quinolinate acid phosph 34.6 1.5E+02 0.0051 22.4 9.1 93 20-117 168-267 (284)
336 1f0k_A MURG, UDP-N-acetylgluco 34.2 98 0.0033 23.2 6.2 61 65-133 256-322 (364)
337 3lkv_A Uncharacterized conserv 33.8 81 0.0028 23.5 5.6 118 13-138 136-262 (302)
338 3vkj_A Isopentenyl-diphosphate 33.7 1.5E+02 0.0051 23.3 7.1 67 50-118 137-217 (368)
339 3gr7_A NADPH dehydrogenase; fl 33.7 1.6E+02 0.0056 22.7 7.4 38 79-116 266-303 (340)
340 3s28_A Sucrose synthase 1; gly 33.7 2.5E+02 0.0085 24.7 11.2 108 17-134 603-728 (816)
341 2ffh_A Protein (FFH); SRP54, s 33.7 1.5E+02 0.005 23.9 7.2 54 16-71 125-188 (425)
342 2b78_A Hypothetical protein SM 33.6 1.5E+02 0.0051 23.2 7.2 53 19-71 237-293 (385)
343 2fpo_A Methylase YHHF; structu 33.6 1.2E+02 0.004 21.0 7.5 64 19-85 79-144 (202)
344 3tfw_A Putative O-methyltransf 33.4 1.3E+02 0.0046 21.5 10.1 71 12-85 83-156 (248)
345 3gnn_A Nicotinate-nucleotide p 33.4 1.2E+02 0.004 23.3 6.2 51 81-133 199-250 (298)
346 4gx0_A TRKA domain protein; me 33.3 1.4E+02 0.0046 24.6 7.3 92 17-118 150-243 (565)
347 4b4u_A Bifunctional protein fo 33.2 60 0.0021 24.9 4.6 59 15-76 177-235 (303)
348 1x1o_A Nicotinate-nucleotide p 33.2 85 0.0029 23.8 5.5 40 93-133 198-237 (286)
349 1w2w_B 5-methylthioribose-1-ph 33.1 51 0.0018 23.4 4.0 82 17-99 4-94 (191)
350 2a0u_A Initiation factor 2B; S 33.0 1.6E+02 0.0054 23.4 7.2 81 16-99 210-299 (383)
351 3k9c_A Transcriptional regulat 33.0 1.3E+02 0.0043 21.9 6.5 60 31-97 31-95 (289)
352 2gl5_A Putative dehydratase pr 32.9 1.8E+02 0.0061 22.9 8.8 84 49-134 230-317 (410)
353 2ift_A Putative methylase HI07 32.7 1.1E+02 0.0039 21.0 5.9 66 18-85 77-147 (201)
354 2hnk_A SAM-dependent O-methylt 32.6 1.3E+02 0.0045 21.3 8.7 70 14-85 82-167 (239)
355 1viz_A PCRB protein homolog; s 32.6 98 0.0034 22.8 5.6 55 65-121 157-212 (240)
356 1t9k_A Probable methylthioribo 32.5 1.4E+02 0.0048 23.3 6.8 81 16-99 181-270 (347)
357 1j8m_F SRP54, signal recogniti 32.4 83 0.0028 23.8 5.4 53 17-71 126-188 (297)
358 1eep_A Inosine 5'-monophosphat 32.3 1.6E+02 0.0056 23.2 7.3 56 62-118 164-221 (404)
359 2yw3_A 4-hydroxy-2-oxoglutarat 32.3 1.3E+02 0.0046 21.2 7.6 82 46-135 110-199 (207)
360 4em8_A Ribose 5-phosphate isom 31.8 80 0.0027 21.5 4.6 32 17-48 7-40 (148)
361 1w1z_A Delta-aminolevulinic ac 31.8 27 0.00092 27.1 2.4 70 42-115 225-295 (328)
362 1lnq_A MTHK channels, potassiu 31.7 1.7E+02 0.0057 22.2 7.1 88 20-118 140-230 (336)
363 3ox4_A Alcohol dehydrogenase 2 31.5 79 0.0027 24.9 5.3 63 18-85 32-107 (383)
364 2xxa_A Signal recognition part 31.5 55 0.0019 26.4 4.4 53 17-71 129-191 (433)
365 1ep3_A Dihydroorotate dehydrog 31.4 59 0.002 24.4 4.4 57 79-135 230-292 (311)
366 1sui_A Caffeoyl-COA O-methyltr 31.4 1.5E+02 0.005 21.4 11.8 70 14-85 101-176 (247)
367 3dzc_A UDP-N-acetylglucosamine 31.3 1.9E+02 0.0063 22.6 8.1 43 89-136 325-367 (396)
368 3vzx_A Heptaprenylglyceryl pho 31.2 1.5E+02 0.0052 21.6 7.8 68 64-133 154-225 (228)
369 3llv_A Exopolyphosphatase-rela 31.2 1E+02 0.0036 19.7 9.7 94 17-120 29-123 (141)
370 3igs_A N-acetylmannosamine-6-p 31.0 1.5E+02 0.0052 21.4 6.9 63 49-117 90-154 (232)
371 2khz_A C-MYC-responsive protei 30.9 96 0.0033 21.2 5.1 114 16-137 10-152 (165)
372 3vnd_A TSA, tryptophan synthas 30.8 1.7E+02 0.0057 21.9 6.8 99 20-120 127-236 (267)
373 3o9z_A Lipopolysaccaride biosy 30.8 1.4E+02 0.0049 22.4 6.5 49 88-136 70-122 (312)
374 3o4f_A Spermidine synthase; am 30.8 31 0.0011 26.4 2.6 57 16-75 106-169 (294)
375 1tqj_A Ribulose-phosphate 3-ep 30.7 52 0.0018 23.9 3.8 55 63-118 134-200 (230)
376 2qfm_A Spermine synthase; sper 30.4 2E+02 0.0068 22.6 9.9 56 18-73 212-277 (364)
377 1rpx_A Protein (ribulose-phosp 30.4 1.5E+02 0.005 21.1 8.3 58 77-134 55-115 (230)
378 3g40_A Na-K-CL cotransporter; 30.3 44 0.0015 25.6 3.4 79 17-100 195-279 (294)
379 2b8t_A Thymidine kinase; deoxy 30.3 19 0.00065 26.3 1.3 80 17-98 40-124 (223)
380 2poz_A Putative dehydratase; o 30.2 1.7E+02 0.0058 22.8 7.1 85 49-135 211-299 (392)
381 3ntv_A MW1564 protein; rossman 30.0 1.4E+02 0.0049 21.0 6.2 64 17-85 95-162 (232)
382 1h7n_A 5-aminolaevulinic acid 29.6 40 0.0014 26.3 3.1 64 49-115 241-306 (342)
383 1qpo_A Quinolinate acid phosph 29.5 1.6E+02 0.0054 22.3 6.4 53 81-135 184-237 (284)
384 3c0k_A UPF0064 protein YCCW; P 29.3 2E+02 0.0069 22.4 8.3 54 18-71 244-301 (396)
385 2fhp_A Methylase, putative; al 29.2 1.3E+02 0.0044 20.0 9.3 68 18-85 68-138 (187)
386 1jub_A Dihydroorotate dehydrog 29.1 76 0.0026 23.9 4.7 57 79-135 229-294 (311)
387 3p9z_A Uroporphyrinogen III co 29.0 1.6E+02 0.0054 21.0 6.9 106 17-133 110-224 (229)
388 2c6q_A GMP reductase 2; TIM ba 29.0 2E+02 0.0069 22.3 12.1 100 18-121 133-255 (351)
389 4fxs_A Inosine-5'-monophosphat 28.9 2.4E+02 0.0082 23.1 11.2 98 18-118 244-362 (496)
390 3orh_A Guanidinoacetate N-meth 28.8 1.1E+02 0.0037 21.9 5.3 54 19-74 85-139 (236)
391 3sr7_A Isopentenyl-diphosphate 28.7 1.2E+02 0.0042 23.8 5.9 69 49-119 156-237 (365)
392 3ecs_A Translation initiation 28.6 2E+02 0.0069 22.1 6.9 79 16-99 146-232 (315)
393 3p9n_A Possible methyltransfer 28.6 1.4E+02 0.0047 20.2 9.3 66 18-85 68-137 (189)
394 3czc_A RMPB; alpha/beta sandwi 28.6 1.1E+02 0.0038 19.2 8.1 78 16-105 17-101 (110)
395 2gdq_A YITF; mandelate racemas 28.2 2.1E+02 0.0072 22.2 8.1 76 49-126 196-273 (382)
396 1zgh_A Methionyl-tRNA formyltr 28.2 59 0.002 24.4 3.8 53 17-71 30-85 (260)
397 3ec7_A Putative dehydrogenase; 28.1 2E+02 0.0069 22.0 9.2 108 17-136 23-137 (357)
398 1xj5_A Spermidine synthase 1; 28.0 1.8E+02 0.0061 22.3 6.7 57 16-74 143-205 (334)
399 1qop_A Tryptophan synthase alp 28.0 98 0.0033 22.9 5.0 40 79-118 194-233 (268)
400 3ohs_X Trans-1,2-dihydrobenzen 27.9 1.7E+02 0.0057 22.1 6.5 47 90-136 66-116 (334)
401 3ce9_A Glycerol dehydrogenase; 27.8 94 0.0032 24.0 5.1 76 19-98 36-120 (354)
402 3sc6_A DTDP-4-dehydrorhamnose 27.8 1.5E+02 0.0053 21.4 6.2 54 18-73 6-66 (287)
403 2al1_A Enolase 1, 2-phospho-D- 27.7 1.9E+02 0.0066 23.2 7.0 84 49-135 274-364 (436)
404 2o07_A Spermidine synthase; st 27.4 1.7E+02 0.0056 22.1 6.3 55 17-74 119-179 (304)
405 3kke_A LACI family transcripti 27.4 1.8E+02 0.0062 21.2 7.9 63 29-97 33-101 (303)
406 3ajd_A Putative methyltransfer 27.3 1.8E+02 0.0063 21.2 8.4 55 18-72 109-165 (274)
407 1pv8_A Delta-aminolevulinic ac 27.3 38 0.0013 26.3 2.6 70 42-115 224-295 (330)
408 1njg_A DNA polymerase III subu 27.3 1.4E+02 0.0048 20.4 5.7 73 63-136 126-200 (250)
409 2px0_A Flagellar biosynthesis 27.3 2E+02 0.0067 21.6 6.8 54 17-71 134-190 (296)
410 3mkc_A Racemase; metabolic pro 27.1 2.2E+02 0.0074 22.4 7.2 76 49-126 218-294 (394)
411 2goy_A Adenosine phosphosulfat 27.0 1.5E+02 0.0052 21.9 6.0 67 30-97 43-113 (275)
412 3e8x_A Putative NAD-dependent 27.0 78 0.0027 22.3 4.2 33 16-48 20-52 (236)
413 3vue_A GBSS-I, granule-bound s 26.9 2.1E+02 0.0072 23.5 7.3 101 24-135 364-476 (536)
414 2xzm_U Ribosomal protein L7AE 26.9 1.4E+02 0.0046 19.6 7.7 84 22-110 1-84 (126)
415 3cu2_A Ribulose-5-phosphate 3- 26.8 97 0.0033 22.7 4.7 85 49-136 27-116 (237)
416 3m6w_A RRNA methylase; rRNA me 26.8 1.9E+02 0.0065 23.5 6.9 56 14-72 123-179 (464)
417 2r6o_A Putative diguanylate cy 26.5 2E+02 0.0067 21.5 6.6 98 33-133 168-279 (294)
418 2x0d_A WSAF; GT4 family, trans 26.5 1.5E+02 0.0052 23.3 6.2 76 50-137 305-380 (413)
419 3tdn_A FLR symmetric alpha-bet 26.3 14 0.00048 27.1 0.0 40 79-118 189-228 (247)
420 4gud_A Imidazole glycerol phos 26.1 83 0.0028 22.0 4.2 43 19-69 4-46 (211)
421 1wa3_A 2-keto-3-deoxy-6-phosph 26.0 1.7E+02 0.0057 20.3 8.9 82 47-131 18-101 (205)
422 3r8r_A Transaldolase; pentose 25.9 1.1E+02 0.0036 22.2 4.7 79 35-120 96-186 (212)
423 1uir_A Polyamine aminopropyltr 25.9 2.1E+02 0.0073 21.5 7.6 57 16-75 100-163 (314)
424 2qr6_A IMP dehydrogenase/GMP r 25.9 2.4E+02 0.0081 22.1 9.7 55 62-118 177-238 (393)
425 2v25_A Major cell-binding fact 25.8 1.7E+02 0.0057 20.3 7.5 53 16-71 147-201 (259)
426 3ajx_A 3-hexulose-6-phosphate 25.8 1.7E+02 0.0057 20.3 7.3 84 30-117 92-184 (207)
427 3jy6_A Transcriptional regulat 25.5 1.9E+02 0.0064 20.7 9.1 14 33-46 29-42 (276)
428 3r3h_A O-methyltransferase, SA 25.5 72 0.0025 23.1 3.8 70 14-85 82-156 (242)
429 1sxj_A Activator 1 95 kDa subu 25.4 2.1E+02 0.0071 23.3 7.0 73 62-135 147-223 (516)
430 3l4b_C TRKA K+ channel protien 25.2 1.8E+02 0.006 20.3 9.4 108 17-136 23-133 (218)
431 2vsy_A XCC0866; transferase, g 25.2 2.7E+02 0.0092 22.4 9.9 109 17-135 406-521 (568)
432 1iy9_A Spermidine synthase; ro 25.1 1.9E+02 0.0064 21.3 6.2 55 17-74 99-159 (275)
433 3b0p_A TRNA-dihydrouridine syn 25.0 1.9E+02 0.0064 22.4 6.3 56 61-117 155-223 (350)
434 4h83_A Mandelate racemase/muco 24.9 1.8E+02 0.006 22.8 6.2 86 49-135 221-310 (388)
435 2px2_A Genome polyprotein [con 24.8 87 0.003 23.6 4.1 59 62-133 138-198 (269)
436 3oa2_A WBPB; oxidoreductase, s 24.8 1.3E+02 0.0044 22.7 5.3 49 88-136 71-123 (318)
437 2i7c_A Spermidine synthase; tr 24.8 2.1E+02 0.0072 21.1 7.1 56 16-74 101-162 (283)
438 4a26_A Putative C-1-tetrahydro 24.7 2.2E+02 0.0076 21.7 6.5 56 16-75 164-222 (300)
439 1mzh_A Deoxyribose-phosphate a 24.5 1.1E+02 0.0039 22.0 4.7 54 61-114 143-199 (225)
440 3m4x_A NOL1/NOP2/SUN family pr 24.4 2E+02 0.0068 23.3 6.6 53 17-72 130-184 (456)
441 2b2c_A Spermidine synthase; be 24.4 1.3E+02 0.0044 22.9 5.2 56 16-74 131-192 (314)
442 1mxs_A KDPG aldolase; 2-keto-3 24.4 2E+02 0.0069 20.7 9.2 97 32-132 18-117 (225)
443 3zwt_A Dihydroorotate dehydrog 24.4 1E+02 0.0035 24.2 4.7 57 79-135 285-350 (367)
444 3ic5_A Putative saccharopine d 24.3 1.2E+02 0.0042 18.2 6.8 90 17-116 5-97 (118)
445 3ph3_A Ribose-5-phosphate isom 24.3 1.8E+02 0.0062 20.2 9.1 32 16-47 19-52 (169)
446 1vzw_A Phosphoribosyl isomeras 24.3 2E+02 0.0067 20.5 6.9 69 49-120 33-105 (244)
447 3sg0_A Extracellular ligand-bi 24.2 2.3E+02 0.0078 21.2 6.8 75 18-96 160-246 (386)
448 1a4i_A Methylenetetrahydrofola 24.2 1.5E+02 0.005 22.8 5.3 56 16-75 164-220 (301)
449 2o56_A Putative mandelate race 24.1 2E+02 0.0067 22.6 6.4 84 49-134 227-314 (407)
450 2e6f_A Dihydroorotate dehydrog 24.1 95 0.0032 23.4 4.4 57 79-135 232-296 (314)
451 2zbt_A Pyridoxal biosynthesis 24.1 46 0.0016 25.1 2.6 40 79-118 196-237 (297)
452 3kux_A Putative oxidoreductase 24.0 2.4E+02 0.0082 21.4 11.6 110 14-137 4-118 (352)
453 2as0_A Hypothetical protein PH 24.0 2.6E+02 0.0087 21.7 8.1 54 18-71 241-297 (396)
454 3p2o_A Bifunctional protein fo 23.8 1.4E+02 0.0049 22.6 5.2 57 16-75 159-215 (285)
455 4dz1_A DALS D-alanine transpor 23.8 1.3E+02 0.0043 21.3 4.9 53 16-71 136-192 (259)
456 2qh8_A Uncharacterized protein 23.8 1.9E+02 0.0065 21.2 6.0 79 14-95 137-225 (302)
457 3evn_A Oxidoreductase, GFO/IDH 23.8 2.3E+02 0.008 21.2 6.7 49 89-137 66-118 (329)
458 3fhl_A Putative oxidoreductase 23.5 1.7E+02 0.0058 22.4 5.8 47 89-135 64-114 (362)
459 1ii5_A SLR1257 protein; membra 23.4 1.8E+02 0.0061 19.7 7.7 49 16-71 115-163 (233)
460 2yw3_A 4-hydroxy-2-oxoglutarat 23.4 2E+02 0.0068 20.3 6.7 57 72-131 45-101 (207)
461 1p9l_A Dihydrodipicolinate red 23.4 2.2E+02 0.0076 20.8 8.4 112 18-134 1-120 (245)
462 2ov6_A V-type ATP synthase sub 23.2 1.3E+02 0.0046 18.6 4.3 50 18-73 1-54 (101)
463 3i6v_A Periplasmic His/Glu/Gln 23.2 1.9E+02 0.0064 20.0 7.1 48 16-71 106-153 (232)
464 3e82_A Putative oxidoreductase 23.2 2.3E+02 0.008 21.7 6.6 105 17-136 7-117 (364)
465 3dip_A Enolase; structural gen 23.0 2.1E+02 0.0072 22.6 6.4 85 49-135 225-314 (410)
466 2qgy_A Enolase from the enviro 23.0 1.7E+02 0.0057 22.9 5.8 85 49-135 206-294 (391)
467 1vs1_A 3-deoxy-7-phosphoheptul 23.0 1.4E+02 0.0047 22.5 5.0 85 50-135 161-272 (276)
468 3oqb_A Oxidoreductase; structu 23.0 2.3E+02 0.0079 21.8 6.6 30 103-132 98-129 (383)
469 1kbi_A Cytochrome B2, L-LCR; f 23.0 2.3E+02 0.0078 23.4 6.7 66 50-118 262-370 (511)
470 2akz_A Gamma enolase, neural; 22.9 2.6E+02 0.0088 22.5 6.9 84 49-135 271-361 (439)
471 3l5l_A Xenobiotic reductase A; 22.8 1.5E+02 0.0052 23.0 5.4 40 78-117 283-322 (363)
472 3qk7_A Transcriptional regulat 22.7 2.2E+02 0.0076 20.6 7.7 62 30-97 29-95 (294)
473 3oix_A Putative dihydroorotate 22.7 1.1E+02 0.0037 23.9 4.5 57 79-135 262-327 (345)
474 3ddm_A Putative mandelate race 22.7 2.3E+02 0.0078 22.3 6.5 85 49-134 211-299 (392)
475 3hl0_A Maleylacetate reductase 22.5 72 0.0025 24.8 3.5 78 18-100 35-121 (353)
476 3l07_A Bifunctional protein fo 22.5 1.7E+02 0.0057 22.2 5.3 56 16-75 160-216 (285)
477 3ew7_A LMO0794 protein; Q8Y8U8 22.3 1.1E+02 0.0039 20.9 4.3 29 18-46 1-29 (221)
478 3nvt_A 3-deoxy-D-arabino-heptu 22.2 2.6E+02 0.0089 22.1 6.7 101 32-135 240-376 (385)
479 2esr_A Methyltransferase; stru 22.2 1.8E+02 0.006 19.2 5.9 52 18-72 55-109 (177)
480 3qtp_A Enolase 1; glycolysis, 22.2 2.3E+02 0.0079 23.0 6.4 110 24-135 221-371 (441)
481 1x1o_A Nicotinate-nucleotide p 22.1 2.6E+02 0.0088 21.1 8.5 91 20-117 169-266 (286)
482 2o8v_A Phosphoadenosine phosph 22.1 2.2E+02 0.0074 20.7 5.9 71 29-99 33-107 (252)
483 3ll7_A Putative methyltransfer 21.8 1.4E+02 0.0049 23.8 5.1 53 17-71 115-171 (410)
484 3sgz_A Hydroxyacid oxidase 2; 21.8 2.9E+02 0.0099 21.6 8.0 72 44-118 222-300 (352)
485 4ew6_A D-galactose-1-dehydroge 21.7 2.6E+02 0.009 21.1 9.0 102 17-136 25-131 (330)
486 4fn4_A Short chain dehydrogena 21.7 2.4E+02 0.0083 20.6 6.5 57 16-72 30-93 (254)
487 3lkz_A Non-structural protein 21.7 2.8E+02 0.0096 21.4 6.6 59 62-134 159-220 (321)
488 3mz0_A Inositol 2-dehydrogenas 21.6 2.6E+02 0.009 21.1 10.7 32 103-134 81-114 (344)
489 4hjf_A Ggdef family protein; s 21.6 1.4E+02 0.0049 22.9 5.0 103 30-135 214-330 (340)
490 3c3p_A Methyltransferase; NP_9 21.4 2E+02 0.0069 19.7 7.6 67 14-86 78-147 (210)
491 2uva_G Fatty acid synthase bet 21.4 1.8E+02 0.0063 28.6 6.4 85 33-117 684-793 (2060)
492 2gpy_A O-methyltransferase; st 21.3 2E+02 0.0068 20.1 5.5 66 17-85 78-146 (233)
493 3e18_A Oxidoreductase; dehydro 21.2 2.8E+02 0.0095 21.2 8.9 104 17-135 5-114 (359)
494 2b7n_A Probable nicotinate-nuc 21.2 2.6E+02 0.0088 20.8 6.8 53 80-134 170-224 (273)
495 3re1_A Uroporphyrinogen-III sy 21.2 1.3E+02 0.0043 22.2 4.5 108 15-133 139-261 (269)
496 3i23_A Oxidoreductase, GFO/IDH 21.2 2.6E+02 0.0089 21.2 6.5 47 90-136 65-115 (349)
497 2r6z_A UPF0341 protein in RSP 21.1 2.4E+02 0.0081 20.6 6.0 58 18-75 106-173 (258)
498 2y88_A Phosphoribosyl isomeras 21.1 2.3E+02 0.0078 20.1 8.0 41 80-120 64-104 (244)
499 1jmv_A USPA, universal stress 21.1 1.6E+02 0.0056 18.4 5.2 66 30-98 66-138 (141)
500 1p4c_A L(+)-mandelate dehydrog 21.0 3E+02 0.01 21.5 7.3 85 31-118 215-306 (380)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.95 E-value=2.6e-27 Score=165.58 Aligned_cols=121 Identities=25% Similarity=0.539 Sum_probs=109.9
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcCCe-EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---C
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---M 89 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~ 89 (184)
+.+++|||||||++..+..++.+|+..||. +..+.++.++++.+. +..||+||+|+.||++||+++++++++. +
T Consensus 9 m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~--~~~~DlillD~~MP~mdG~el~~~ir~~~~~~ 86 (134)
T 3to5_A 9 LNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGMQGIDLLKNIRADEELK 86 (134)
T ss_dssp CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH--HHCCSEEEEESCCSSSCHHHHHHHHHHSTTTT
T ss_pred hCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHH--hCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCC
Confidence 446789999999999999999999999985 678999999999988 4569999999999999999999999743 5
Q ss_pred CCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 90 DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 90 ~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
++|||++|+....+...+++++||++|+.||++.++|..++++++++
T Consensus 87 ~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 87 HLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp TCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999988653
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.91 E-value=4.8e-23 Score=140.91 Aligned_cols=116 Identities=28% Similarity=0.453 Sum_probs=107.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~iI 94 (184)
.+|+||||++..+..++..|+..||++..+.++.++++.+. ...||++|+|+.||+++|++++++++.. +++|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~--~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS--EFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT--TBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH--hcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 47999999999999999999999999999999999999987 5669999999999999999999999643 578999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
++|+..+......+++.|+++|+.||++.++|..+++.+++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999889999999999999999999999999999998765
No 3
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.91 E-value=5.1e-23 Score=140.28 Aligned_cols=117 Identities=30% Similarity=0.468 Sum_probs=109.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
.+|+||||++..+..++..|+..||.+..+.++.++++.+. ...||+||+|+.||+.+|+++++.++...++|+|+++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE--ELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--TTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHh--hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 48999999999999999999999999999999999999987 5679999999999999999999999766789999999
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+..+......+++.|+++|+.||++.++|..+++.++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 81 AKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp ESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 988888889999999999999999999999999988763
No 4
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.91 E-value=1.1e-22 Score=141.56 Aligned_cols=121 Identities=32% Similarity=0.488 Sum_probs=109.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc---cCCCCE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL---EMDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~---~~~~~i 93 (184)
..+|+|+||++..+..++..|+..||.+..+.++.++++.+. ...||+||+|+.||+.+|+++++.++. .+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIY--KNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH--hCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 468999999999999999999999999999999999999987 456999999999999999999999964 357899
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKP 139 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~ 139 (184)
|++++..+......+++.|+++|+.||++.++|..+++.++.+...
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~~ 127 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTTI 127 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC---
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccCC
Confidence 9999998888999999999999999999999999999999876543
No 5
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.90 E-value=6.1e-25 Score=151.20 Aligned_cols=113 Identities=27% Similarity=0.382 Sum_probs=99.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi 95 (184)
.+|||||||++..+..++.+|+..||++. .+.+++++++.+. +..||+||+|+.||+++|+++++.++. .++|||+
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~--~~~~DlvllDi~mP~~~G~el~~~lr~-~~ipvI~ 84 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIAR--KGQFDIAIIDVNLDGEPSYPVADILAE-RNVPFIF 84 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHH--HCCSSEEEECSSSSSCCSHHHHHHHHH-TCCSSCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--hCCCCEEEEecCCCCCCHHHHHHHHHc-CCCCEEE
Confidence 57999999999999999999999999875 7899999999997 456999999999999999999999975 5799999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
+|++.+... +.++|+.+|+.||++.++|..+++++.+
T Consensus 85 lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 85 ATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp BCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred EecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 998765443 3467999999999999999998876544
No 6
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.89 E-value=6.6e-22 Score=137.15 Aligned_cols=120 Identities=19% Similarity=0.395 Sum_probs=106.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC-eEEEECCHHHHHHHHHh---cCCCccEEEEeCCCCCCCHHHHHHHhcc--cCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY-EVTKCNRAEIALDMLRM---SKNGYDIVISDVHMPDMDGFKLHEQVGL--EMD 90 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~-~v~~~~~~~~~~~~l~~---~~~~~dlvilD~~l~~~~g~~l~~~l~~--~~~ 90 (184)
.++|+||||++..+..++..|+..|+ .+..+.++.++++.+.. ....||+||+|+.||+++|+++++.++. .+.
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 81 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 81 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCC
Confidence 46899999999999999999998887 58889999999998863 1146999999999999999999999974 347
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+|||++|+..+......+++.|+++|+.||++.++|..+++.+...
T Consensus 82 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 8999999998888899999999999999999999999999988653
No 7
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.89 E-value=1.1e-21 Score=139.36 Aligned_cols=121 Identities=26% Similarity=0.422 Sum_probs=111.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCCE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~i 93 (184)
+++|+||||++..+..++..|+..||.+..+.++.++++.+. ...||+||+|+.||+.+|+++++.++.. +.+||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS--LTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPV 84 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHT--TCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH--hCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCE
Confidence 578999999999999999999999999999999999999987 5669999999999999999999999754 57899
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKP 139 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~ 139 (184)
|+++...+......+++.|+++|+.||++.++|..+++.++++...
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 85 ILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 9999988899999999999999999999999999999999876553
No 8
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.89 E-value=1.8e-21 Score=134.04 Aligned_cols=119 Identities=28% Similarity=0.527 Sum_probs=107.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCe-EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLP 92 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~ 92 (184)
.++|+||||++..+..++..|+..|+. +..+.++.++++.+.. ...||+||+|+.||+++|++++++++.. +.+|
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~-~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDA-NADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH-CTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh-CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 578999999999999999999999985 8899999999988763 3459999999999999999999999643 5789
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
||++++..+......+++.|+++|+.||++.++|..+++.++.+
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999998889999999999999999999999999999998764
No 9
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.89 E-value=8.4e-22 Score=138.36 Aligned_cols=119 Identities=30% Similarity=0.456 Sum_probs=104.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-----cCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-----EMD 90 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-----~~~ 90 (184)
..++|+||||++..+..++.+|+..|+.+..+.+++++++.+. ...||+||+|+.||+++|+++++.++. .+.
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~ 90 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA--EEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRY 90 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHH--HSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCC
Confidence 4689999999999999999999999999999999999999987 456999999999999999999999963 246
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+|+|+++...+.+....+++.|+++|+.||++.++|..++..+..+
T Consensus 91 ~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 91 TPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 8999999988888999999999999999999999999999988654
No 10
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.89 E-value=2.4e-21 Score=132.69 Aligned_cols=120 Identities=22% Similarity=0.353 Sum_probs=109.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi 95 (184)
..+|+|+||++..+..++..|...|+.+..+.++.++++.+. ...||++|+|+.||+.+|+++++.++. .+.+|+|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAP--DVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGG--GCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh--cCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 458999999999999999999998999999999999999876 456999999999999999999999964 46889999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
+++..+......+++.|+++|+.||++.++|..+++.+.++..
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 123 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHLV 123 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTCC
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhhh
Confidence 9998888899999999999999999999999999999876543
No 11
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.88 E-value=6.6e-22 Score=137.92 Aligned_cols=124 Identities=16% Similarity=0.266 Sum_probs=111.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHh-cCCeEEEECCHHHHHHHHHhcC-CCccEEEEeCCCC-CCCHHHHHHHhcc---cC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRK-CLYEVTKCNRAEIALDMLRMSK-NGYDIVISDVHMP-DMDGFKLHEQVGL---EM 89 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~~~~~~~~l~~~~-~~~dlvilD~~l~-~~~g~~l~~~l~~---~~ 89 (184)
..++|+||||++..+..++.+|.. .|+.+..+.++.++++.+. . ..||+||+|+.|| +.+|+++++.++. .+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~--~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFK--DLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTT--TCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHh--cCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 356899999999999999999999 8999999999999999887 5 6799999999999 9999999999965 57
Q ss_pred CCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 90 DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 90 ~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
.+|||+++...+.....++++.|+++|+.||++.++|..+++.++++..+.+
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 132 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQRFR 132 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-----
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccccC
Confidence 8999999999889999999999999999999999999999999998766544
No 12
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.88 E-value=3e-21 Score=130.64 Aligned_cols=117 Identities=26% Similarity=0.442 Sum_probs=107.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
.+|+|+||++..+..++..|...|+.+..+.++.++++.+.. ..||++|+|+.||+.+|+++++.++..+.+|+|+++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA--EQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHh--CCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 479999999999999999999999999999999999999873 459999999999999999999999766789999999
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+..+......+++.|+++|+.||++.++|..+++.+.++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 988888888999999999999999999999999988754
No 13
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.88 E-value=7.5e-22 Score=136.41 Aligned_cols=124 Identities=19% Similarity=0.241 Sum_probs=110.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIM 95 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi 95 (184)
++|+|+||++..+..++..|.+.|+.+. .+.++.++++.+.. ..||+||+|+.||+.+|+++++.++. .+.+|+|+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHH--HCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHh--cCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEE
Confidence 6899999999999999999999999887 89999999999873 45999999999999999999999964 46889999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCCCC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFEES 143 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~~~ 143 (184)
+++..+......+++.|+++|+.||++.++|..+++.++++..+++..
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~ 127 (134)
T 3f6c_A 80 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFS 127 (134)
T ss_dssp EECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCBCCCC
T ss_pred EeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEEeCHH
Confidence 999888888999999999999999999999999999999988776543
No 14
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.88 E-value=4.4e-21 Score=132.94 Aligned_cols=124 Identities=23% Similarity=0.298 Sum_probs=109.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc--CCCCE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE--MDLPV 93 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~--~~~~i 93 (184)
...+|+|+||++..+..++..|...|+.+..+.+..+++..+.. ...||+||+|+.|++.+|+++++.++.. +.+|+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~i 84 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHY-QKRIGLMITDLRMQPESGLDLIRTIRASERAALSI 84 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHH-CTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHh-CCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCE
Confidence 35689999999999999999999999999999999999998873 2349999999999999999999999754 68899
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
|+++...+......+++.|+++|+.||++.++|..+++++..+..+.
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (136)
T 3hdv_A 85 IVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEGH 131 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-----
T ss_pred EEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCchhh
Confidence 99999888889999999999999999999999999999998876544
No 15
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.88 E-value=2.2e-21 Score=148.31 Aligned_cols=120 Identities=31% Similarity=0.478 Sum_probs=110.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVI 94 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iI 94 (184)
+.++|+||||++..+..+...|+..|+.+..+.++.++++.+.. ..||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 99 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE--TRPDAVILDVXMPGMDGFGVLRRLRADGIDAPAL 99 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 46799999999999999999999999999999999999999873 459999999999999999999999754 689999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
+++...+......+++.||++|+.||++.++|..+++.++++.
T Consensus 100 ~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 100 FLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp EEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 9999988899999999999999999999999999999998653
No 16
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.88 E-value=3.6e-21 Score=135.83 Aligned_cols=126 Identities=22% Similarity=0.321 Sum_probs=112.5
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCC
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCL--YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMD 90 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~--~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~ 90 (184)
...+++|+||||++..+..+...|...+ +.+..+.++.++++.+. ...||+||+|+.|++.+|+++++.++. .+.
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~--~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~ 94 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLE--KESVDIAILDVEMPVKTGLEVLEWIRSEKLE 94 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHT--TSCCSEEEECSSCSSSCHHHHHHHHHHTTCS
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhh--ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCC
Confidence 3346799999999999999999999876 78899999999999987 566999999999999999999999964 468
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
+|||++++..+......+++.|+++|+.||++.++|..+++.++++...++
T Consensus 95 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~~ 145 (150)
T 4e7p_A 95 TKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRKEYS 145 (150)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCCEEC
T ss_pred CeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCEEcC
Confidence 999999999989999999999999999999999999999999998766443
No 17
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.87 E-value=7.7e-21 Score=128.92 Aligned_cols=116 Identities=28% Similarity=0.416 Sum_probs=106.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~ 96 (184)
++|+|+||++..+..+...|...|+.+..+.++.++++.+. ...||++|+|+.||+.+|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~--~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN--EHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHh--ccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 47999999999999999999999999999999999999987 356999999999999999999999964 468899999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
++..+......+++.|+++|+.||++.++|..+++.+.+
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHH
Confidence 998888888999999999999999999999999998765
No 18
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.87 E-value=4.2e-21 Score=132.06 Aligned_cols=121 Identities=25% Similarity=0.406 Sum_probs=102.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iI 94 (184)
.+++|+|+||++..+..++..|...|+.+..+.++.++++.+. ...||+||+|+.+++.+|+++++.++. .+.+|+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG--GFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHT--TCCCSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHh--cCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 3679999999999999999999999999999999999999986 566999999999999999999999964 4689999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCC-CHHHHHHHHHHHHcCCC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPI-RIKELRNIWQHVAQQPK 138 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~-~~~~l~~~l~~~~~~~~ 138 (184)
++++..+......+++.|+++|+.||+ +.++|..+++.+++++.
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~~ 128 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC---
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchhh
Confidence 999998888899999999999999999 89999999999987643
No 19
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.87 E-value=5.2e-22 Score=145.23 Aligned_cols=117 Identities=21% Similarity=0.360 Sum_probs=108.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi 95 (184)
+++|+||||++..+..++.+|...||.+..+.++.++++.+. ...||+||+|+.||+++|+++++.++. .+++|||+
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 84 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAG--AEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILV 84 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHT--TSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--hCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEE
Confidence 568999999999999999999999999999999999999987 566999999999999999999999964 46899999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
+|+..+.+....+++.||++|+.||++.++|..+++.++.
T Consensus 85 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~ 124 (184)
T 3rqi_A 85 LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS 124 (184)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHH
T ss_pred EeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998876654
No 20
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.87 E-value=4.2e-21 Score=131.03 Aligned_cols=117 Identities=24% Similarity=0.396 Sum_probs=107.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~ 96 (184)
.+|+|+||++..+..++..|...|+.+..+.++.++++.+.. ..||++|+|+.||+.+|+++++.++. .+.+|+|++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK--ERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 589999999999999999999989999999999999999873 45999999999999999999999964 478999999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
++..+......+++.|+++|+.||++.++|..+++.+.++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 82 TAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp ESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred EccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 9988888889999999999999999999999999987654
No 21
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.87 E-value=7.3e-21 Score=129.35 Aligned_cols=116 Identities=19% Similarity=0.377 Sum_probs=106.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
.+|+|+||++..+..++..|...|+.+..+.++.++++.+. ...||++|+|+.||+.+|+++++.++..+.+|+|+++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s 80 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ--NQSVDLILLDINLPDENGLMLTRALRERSTVGIILVT 80 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHh--cCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEE
Confidence 48999999999999999999988999999999999999887 3559999999999999999999999776789999999
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
+..+......+++.|+++|+.||++.++|...++.+.+
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 81 GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 98888888999999999999999999999999988765
No 22
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.87 E-value=3.8e-21 Score=133.10 Aligned_cols=122 Identities=17% Similarity=0.272 Sum_probs=106.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCL--YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~--~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iI 94 (184)
++|+|+||++..+..++..|+..+ +.+..+.++.++++.+.. ..||++|+|+.||+.+|+++++.++. .+.+|||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~--~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii 81 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE--YNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVI 81 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhh--cCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEE
Confidence 589999999999999999999876 567789999999999873 45999999999999999999999964 4689999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
++++..+.....++++.|+++|+.||++.++|..+++.+.++..++.
T Consensus 82 ~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~ 128 (133)
T 3b2n_A 82 IVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKEGH 128 (133)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC------
T ss_pred EEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCCccC
Confidence 99998888899999999999999999999999999999988765544
No 23
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.87 E-value=4.9e-21 Score=131.44 Aligned_cols=119 Identities=28% Similarity=0.426 Sum_probs=107.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCC-eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLY-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDL 91 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~-~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~ 91 (184)
..++|+|+||++..+..++..|...|+ .+..+.++.++++.+. ...||++|+|+.||+.+|+++++.++.. +.+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~--~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~ 82 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMA--QNPHHLVISDFNMPKMDGLGLLQAVRANPATKKA 82 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHH--TSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTC
T ss_pred ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHH--cCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCC
Confidence 356899999999999999999998888 7888999999999987 4569999999999999999999999753 578
Q ss_pred CEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 92 PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
|+|++++..+......+++.|+++|+.||++.++|..+++.+.+.
T Consensus 83 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 83 AFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 999999888888889999999999999999999999999988753
No 24
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.87 E-value=4.1e-21 Score=133.61 Aligned_cols=118 Identities=19% Similarity=0.365 Sum_probs=108.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMM 96 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~ 96 (184)
.++|+|+||++..+..+...|...|+.+..+.++.++++.+. ...||++|+|+.||+.+|+++++.++....+|+|++
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~l 81 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIF--SNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYM 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH--HCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEE
Confidence 468999999999999999999988999999999999999987 356999999999999999999999976558899999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+...+......+++.|+++|+.||++.++|..+++.+.++
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 82 TYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121 (136)
T ss_dssp ESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 9988888899999999999999999999999999887653
No 25
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.87 E-value=5.1e-21 Score=132.27 Aligned_cols=118 Identities=23% Similarity=0.356 Sum_probs=108.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi 95 (184)
.++|+|+||++..+..++..|+..|+.+..+.++.++++.+. ...||++|+|+.||+.+|+++++.++. .+.+|+|+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIE--NEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh--cCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 358999999999999999999988999999999999999987 356999999999999999999999964 46889999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+++..+......+++.|+++|+.||++.++|..+++.++++
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhc
Confidence 99988888899999999999999999999999999988764
No 26
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.87 E-value=1.3e-20 Score=129.20 Aligned_cols=118 Identities=30% Similarity=0.530 Sum_probs=107.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCC-eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc---cCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLY-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL---EMDL 91 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~-~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~---~~~~ 91 (184)
+.++|+|+||++..+..++..|...|+ .+..+.++.++++.+. ...||++|+|+.||+.+|+++++.++. .+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~--~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHT--TCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 457899999999999999999998888 7889999999999886 456999999999999999999999975 3578
Q ss_pred CEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 92 PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
|+|++++..+......+++.|+++|+.||++.++|..+++.+.+
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 99999998888899999999999999999999999999988765
No 27
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.87 E-value=3.1e-21 Score=147.72 Aligned_cols=122 Identities=25% Similarity=0.360 Sum_probs=113.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMM 96 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~ 96 (184)
.++|+||||++..+..+...|...|+.+..+.++.++++.+. ...||+||+|+.||+.+|+++++.++..+.+|||++
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAR--EDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH--HSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--cCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 468999999999999999999999999999999999999987 456999999999999999999999987788999999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
+...+......+++.||++|+.||++.++|..+++.++++....
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~~~ 158 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTSE 158 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCCSC
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999876543
No 28
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.87 E-value=8.6e-21 Score=129.16 Aligned_cols=116 Identities=19% Similarity=0.361 Sum_probs=106.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
.+|+|+||++..+..++..|...|+.+..+.++.++++.+. ...||++|+|+.||+.+|+++++.++..+.+|+|+++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~--~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 81 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS--EYDINLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH--HSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHh--cCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 47999999999999999999988999999999999999987 3569999999999999999999999766789999999
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
+..+......+++.|+++|+.||++.++|..+++.+.+
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 98888888999999999999999999999999988765
No 29
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.87 E-value=8.1e-22 Score=137.02 Aligned_cols=123 Identities=19% Similarity=0.171 Sum_probs=110.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCC--CCHHHHHHHhcc-cCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD--MDGFKLHEQVGL-EMDLP 92 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~--~~g~~l~~~l~~-~~~~~ 92 (184)
..++|+|+||++..+..++..|+..||.+..+.++.++++.+. ...||+||+|+.||+ .+|+++++.++. .+.+|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQI--SDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCC--CTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh--ccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCC
Confidence 3568999999999999999999999999999999999998876 566999999999999 999999999964 46899
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
||+++...+.....++++.|+++|+.||++.++|..+++.+..+....
T Consensus 83 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~~ 130 (136)
T 3kto_A 83 TIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKEG 130 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC--
T ss_pred EEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCCC
Confidence 999999998899999999999999999999999999999998765543
No 30
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.87 E-value=7.8e-21 Score=134.30 Aligned_cols=129 Identities=24% Similarity=0.334 Sum_probs=109.7
Q ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHhcCCe--EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cC
Q 029986 13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLYE--VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EM 89 (184)
Q Consensus 13 ~~~~~~~Ilivdd~~~~~~~l~~~L~~~~~~--v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~ 89 (184)
..+.+.+|+|+||++..++.++..|...|+. +..+.++.++++.+.. ..||+||+|+.|++.+|+++++.++. .+
T Consensus 11 ~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~ 88 (152)
T 3eul_A 11 PQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKA--HLPDVALLDYRMPGMDGAQVAAAVRSYEL 88 (152)
T ss_dssp ---CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHH--HCCSEEEEETTCSSSCHHHHHHHHHHTTC
T ss_pred CCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 3345679999999999999999999988743 5689999999999874 45999999999999999999999964 46
Q ss_pred CCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCCCC
Q 029986 90 DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFEES 143 (184)
Q Consensus 90 ~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~~~ 143 (184)
.+|||++++..+......+++.|+++|+.||++.++|..+++.++++...+++.
T Consensus 89 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~ 142 (152)
T 3eul_A 89 PTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPS 142 (152)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC------
T ss_pred CCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeeeCHH
Confidence 889999999988899999999999999999999999999999999988776654
No 31
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.87 E-value=6.9e-21 Score=129.11 Aligned_cols=116 Identities=25% Similarity=0.427 Sum_probs=105.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCe-EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iI 94 (184)
+++|+|+||++..+..++..|+..|+. +..+.++.++++.+.. ..||++|+|+.||+.+|+++++.++. .+.+|+|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~--~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE--LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEE
Confidence 468999999999999999999988998 5689999999999874 45999999999999999999999964 4689999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
++++..+......+++.|+++|+.||++.++|..+++.+.
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 80 VCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 9999888888999999999999999999999999988763
No 32
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.87 E-value=1.7e-21 Score=135.70 Aligned_cols=123 Identities=23% Similarity=0.338 Sum_probs=109.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc---cCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL---EMDLP 92 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~---~~~~~ 92 (184)
..++|+|+||++..+..+...|...|+.+..+.++.++++.+. ...||+||+|+.|++.+|+++++.++. .+.+|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~--~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVA--RRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH--HSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHH--hCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 4578999999999999999999999999999999999999987 456999999999999999999999964 46899
Q ss_pred EEEEEccCChHHHH-HHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 93 VIMMSVDGCTQDVM-KGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 93 iIi~~~~~~~~~~~-~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
||++++..+..... .+++.|+++|+.||++.++|..+++.++++....
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~~ 131 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAEG 131 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC--
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCCC
Confidence 99998876666666 8899999999999999999999999998765543
No 33
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.87 E-value=1.4e-20 Score=132.80 Aligned_cols=120 Identities=18% Similarity=0.324 Sum_probs=106.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhc-----CCCccEEEEeCCCCCCCHHHHHHHhccc
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMS-----KNGYDIVISDVHMPDMDGFKLHEQVGLE 88 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~-----~~~~dlvilD~~l~~~~g~~l~~~l~~~ 88 (184)
..++|+||||++..+..++..|+..|+ .+..+.++.++++.+... ...||+||+|+.||+.+|+++++.++..
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 357899999999999999999998776 788999999999988631 1469999999999999999999999754
Q ss_pred ---CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 89 ---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 89 ---~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
+.+|||++++..+.....++++.|+++|+.||++.++|..+++.+.+
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 57899999998888889999999999999999999999999998865
No 34
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.87 E-value=9.7e-21 Score=132.36 Aligned_cols=125 Identities=21% Similarity=0.275 Sum_probs=110.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhc---CCCccEEEEeCCCCCCCHHHHHHHhcc---
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMS---KNGYDIVISDVHMPDMDGFKLHEQVGL--- 87 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~---~~~~dlvilD~~l~~~~g~~l~~~l~~--- 87 (184)
+.++|+||||++..+..+...|...|+ .+..+.++.++++.+... ...||+||+|+.||+.+|+++++.++.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 467899999999999999999999998 899999999999998731 156999999999999999999999965
Q ss_pred --cCCCCEEEEEccCChHHHHHHHHcC-CCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 88 --EMDLPVIMMSVDGCTQDVMKGVTHG-ACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 88 --~~~~~iIi~~~~~~~~~~~~a~~~g-a~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
.+.+|+|++++..+......++..| +++|+.||++.++|..+++....+..+.
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~~~ 143 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGHHH 143 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC----
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhccCC
Confidence 4688999999988889999999999 9999999999999999999998876543
No 35
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.87 E-value=7e-21 Score=135.53 Aligned_cols=120 Identities=23% Similarity=0.298 Sum_probs=108.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPV 93 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~i 93 (184)
..++|+||||++..+..+...|+..|+.+. .+.++.++++.+......||+||+|+.|++.+|+++++.++. .+.+||
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~i 114 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARV 114 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCE
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcE
Confidence 357999999999999999999999999988 999999999999743225899999999999999999999964 468999
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
|+++...+......+++.|+++|+.||++.++|..+++.++.
T Consensus 115 i~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 115 IMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred EEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 999999889999999999999999999999999999988754
No 36
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.87 E-value=6.3e-21 Score=129.90 Aligned_cols=117 Identities=20% Similarity=0.404 Sum_probs=101.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~iI 94 (184)
.+|+|+||++..+..++..|+..|+.+..+.++.+++..+.. ..||++|+|+.||+.+|+++++.++.. +.+|+|
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE--NKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--HCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 479999999999999999999999999999999999998873 459999999999999999999999653 578999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
++++.........+++.|+++|+.||++.++|..+++.+..+
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 999887778888999999999999999999999999988764
No 37
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.87 E-value=3.7e-21 Score=134.32 Aligned_cols=119 Identities=20% Similarity=0.273 Sum_probs=108.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHhcccCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD-MDGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-~~g~~l~~~l~~~~~~~iIi 95 (184)
+++|+||||++..+..++..|...|+.+..+.++.++++.+.. ...||+||+|+.||+ .+|+++++.++..+.+|+|+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ 83 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSG-GWYPDLILMDIELGEGMDGVQTALAIQQISELPVVF 83 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-TCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhc-CCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEE
Confidence 5689999999999999999999999999999999999999873 256999999999985 99999999997778999999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+++..+......+++.|+++|+.||++.++|..+++.++++
T Consensus 84 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 84 LTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp EESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 99988888888999999999999999999999999988764
No 38
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.87 E-value=2.2e-20 Score=130.43 Aligned_cols=122 Identities=23% Similarity=0.398 Sum_probs=110.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi 95 (184)
.++|+|+||++..+..++..|...|+.+..+.++.++++.+......||+||+|+.+++.+|+++++.++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 46899999999999999999999999999999999999998743356999999999999999999999964 46899999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
+++..+......+++.|+++|+.||++.++|..+++.++++..
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 125 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKK 125 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHH
Confidence 9998888889999999999999999999999999999877543
No 39
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.86 E-value=1.7e-20 Score=129.23 Aligned_cols=122 Identities=24% Similarity=0.313 Sum_probs=102.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccC--CCCE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEM--DLPV 93 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~--~~~i 93 (184)
..++|+|+||++..+..++..|.+.|+.+..+.++.++++.+. ...||+||+|+.+++.+|+++++.++... ..++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLS--TFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH--hcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 4678999999999999999999999999999999999999987 45699999999999999999999997543 3455
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKP 139 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~ 139 (184)
|++++.........+++.|+++|+.||++.++|..+++....+..+
T Consensus 83 ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (132)
T 3lte_A 83 ILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGHH 128 (132)
T ss_dssp EEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC----
T ss_pred EEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCCC
Confidence 5555555555788999999999999999999999999998876554
No 40
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.86 E-value=1.5e-20 Score=133.03 Aligned_cols=120 Identities=26% Similarity=0.363 Sum_probs=110.2
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCE
Q 029986 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPV 93 (184)
Q Consensus 15 ~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~i 93 (184)
...++|+||||++..+..+...|...|+.+..+.++.++++.+. ...||+||+|+.|++.+|+++++.++. .+.+||
T Consensus 12 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 89 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLA--SREVDLVISAAHLPQMDGPTLLARIHQQYPSTTR 89 (153)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHH--HSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEE
T ss_pred cCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHH--cCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeE
Confidence 34678999999999999999999999999999999999999987 456999999999999999999999964 468999
Q ss_pred EEEEccCChHHHHHHHHcC-CCceEeCCCCHHHHHHHHHHHHcC
Q 029986 94 IMMSVDGCTQDVMKGVTHG-ACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~g-a~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
|+++...+......+++.| +++|+.||++.++|..+++.++++
T Consensus 90 i~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 90 ILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp EEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 9999998889999999999 999999999999999999988764
No 41
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.86 E-value=2.2e-20 Score=130.12 Aligned_cols=123 Identities=24% Similarity=0.345 Sum_probs=110.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHh-cCCe-EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc---cCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRK-CLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL---EMD 90 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~-~~~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~---~~~ 90 (184)
..++|+|+||++..+..+...|.. .|+. +..+.++.++++.+. ...||+||+|+.+++.+|+++++.++. .+.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~--~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLH--TVKPDVVMLDLMMVGMDGFSICHRIKSTPATAN 84 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHH--HTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHH--hcCCCEEEEecccCCCcHHHHHHHHHhCccccC
Confidence 467999999999999999999998 8998 999999999999987 355999999999999999999999965 468
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
+|||++++..+......+++.|+++|+.||++.++|..+++.++++....
T Consensus 85 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 134 (143)
T 3cnb_A 85 IIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKAT 134 (143)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC--
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccc
Confidence 89999999888888899999999999999999999999999998876543
No 42
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.86 E-value=1.9e-20 Score=132.32 Aligned_cols=121 Identities=21% Similarity=0.376 Sum_probs=108.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHh-------cCCCccEEEEeCCCCCCCHHHHHHHhc
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRM-------SKNGYDIVISDVHMPDMDGFKLHEQVG 86 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~-------~~~~~dlvilD~~l~~~~g~~l~~~l~ 86 (184)
..++|+||||++..+..+...|...|+ .+..+.++.++++.+.. ....||+||+|+.||+.+|+++++.++
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 357999999999999999999999988 89999999999999851 245699999999999999999999997
Q ss_pred c---cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 87 L---EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 87 ~---~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
. .+.+|||++++..+......+++.|+++|+.||++.++|..+++.+.+.
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 135 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLF 135 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 5 3688999999998888999999999999999999999999999998654
No 43
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.86 E-value=7.4e-21 Score=141.67 Aligned_cols=122 Identities=26% Similarity=0.449 Sum_probs=105.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCC-eEEEECCHHHHHHHHHhc-----------CCCccEEEEeCCCCCCCHHHHH
Q 029986 15 PAGLRVLVVDDDPIWLRILEKMLRKCLY-EVTKCNRAEIALDMLRMS-----------KNGYDIVISDVHMPDMDGFKLH 82 (184)
Q Consensus 15 ~~~~~Ilivdd~~~~~~~l~~~L~~~~~-~v~~~~~~~~~~~~l~~~-----------~~~~dlvilD~~l~~~~g~~l~ 82 (184)
..+++|+||||++..+..+..+|+..|+ .+..+.++.++++.+... ...||+||+|+.||+++|++++
T Consensus 59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~ 138 (206)
T 3mm4_A 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEAT 138 (206)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHH
Confidence 3467999999999999999999999998 899999999999998742 1369999999999999999999
Q ss_pred HHhccc-----CCCCEEEEEccC-ChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 83 EQVGLE-----MDLPVIMMSVDG-CTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 83 ~~l~~~-----~~~~iIi~~~~~-~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
+.++.. +.+|||+++... .......+++.|+++|+.||++ +|..+++.++++..
T Consensus 139 ~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 139 REIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRH 198 (206)
T ss_dssp HHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC----
T ss_pred HHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence 999753 789999999887 6688889999999999999998 89999998876543
No 44
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.86 E-value=1.7e-20 Score=131.28 Aligned_cols=118 Identities=19% Similarity=0.331 Sum_probs=108.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCe--EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc---cCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYE--VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL---EMDL 91 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~--v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~---~~~~ 91 (184)
+++|+||||++..+..++..|...|+. +..+.++.++++.+. ...||+||+|+.|++.+|+++++.++. .+.+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~--~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~ 82 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQ--QAKYDLIILDIGLPIANGFEVMSAVRKPGANQHT 82 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHT--TCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhh--cCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCC
Confidence 568999999999999999999998876 889999999999987 566999999999999999999999975 4689
Q ss_pred CEEEEEccCChHHHHHHHHcCCCceEeCCC-CHHHHHHHHHHHHcC
Q 029986 92 PVIMMSVDGCTQDVMKGVTHGACNYLLKPI-RIKELRNIWQHVAQQ 136 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~-~~~~l~~~l~~~~~~ 136 (184)
|||++++..+......+++.|+++|+.||+ +.++|..+++.++++
T Consensus 83 pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 83 PIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp CEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 999999998899999999999999999999 999999999988764
No 45
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.86 E-value=5.3e-21 Score=132.69 Aligned_cols=120 Identities=21% Similarity=0.337 Sum_probs=110.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi 95 (184)
.++|+|+||++..+..++..|...++.+..+.++.++++.+.. ..||+||+|+.+++.+|+++++.++. .+.+|||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL--HAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIV 84 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 5799999999999999999999989999999999999999874 45999999999999999999999964 46889999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
++...+......+++.|+++|+.||++.++|..+++.++++..
T Consensus 85 ~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (137)
T 3hdg_A 85 ISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKL 127 (137)
T ss_dssp CCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred EecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHh
Confidence 9998888899999999999999999999999999999987643
No 46
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.86 E-value=5.7e-21 Score=131.76 Aligned_cols=121 Identities=22% Similarity=0.270 Sum_probs=102.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLP 92 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~ 92 (184)
..++|+|+||++..+..++..|+ .|+.+..+.++.++++.+. ...||+||+|+.|++.+|+++++.++.. +.+|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~--~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~p 79 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQAL--AHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIP 79 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHH--HSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCC
Confidence 35689999999999999999999 7899999999999999987 4569999999999999999999999753 4789
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
||++++..+... ..+++.|+++|+.||++.++|..+++.++++....
T Consensus 80 ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 126 (133)
T 3nhm_A 80 VIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEAE 126 (133)
T ss_dssp EEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC--
T ss_pred EEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhccc
Confidence 999998776666 88999999999999999999999999998765543
No 47
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.86 E-value=4.4e-21 Score=131.46 Aligned_cols=118 Identities=24% Similarity=0.262 Sum_probs=104.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc---cCCCCE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL---EMDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~---~~~~~i 93 (184)
.++|+|+||++..+..+...|+..|+.+..+.++.++++.+. ...||+||+|+.|++.+|+++++.++. .+.+|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMS--TRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHH--HSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 468999999999999999999999999999999999999987 455999999999999999999999965 467899
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
|++++..+... ..++..|+++|+.||++.++|.++++...++.
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 99998877777 88899999999999999999999999876543
No 48
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.86 E-value=8.2e-21 Score=128.68 Aligned_cols=117 Identities=26% Similarity=0.344 Sum_probs=107.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
++|+|+||++..+..++..|...|+.+..+.++.+++..+.. ..||++|+|+.||+.+|+++++.++..+.+|+|+++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 589999999999999999999889999999999999988763 459999999999999999999999866789999999
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+..+......+++.|+++|+.||++.++|...++.+.++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHh
Confidence 988888889999999999999999999999999887653
No 49
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.86 E-value=2e-20 Score=129.46 Aligned_cols=120 Identities=24% Similarity=0.455 Sum_probs=108.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi 95 (184)
+.+|+|+||++..+..+...|...|+.+..+.++.++++.+.. ..||++|+|+.||+.+|+++++.++.. +.+|+|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET--EKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhh--cCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEE
Confidence 4589999999999999999999999999999999999998873 459999999999999999999999654 6789999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
+++..+......+++.|+++|+.||++.++|..+++.+.++..
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC-
T ss_pred EECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhc
Confidence 9988888888899999999999999999999999999887543
No 50
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.86 E-value=3.5e-20 Score=128.38 Aligned_cols=120 Identities=18% Similarity=0.337 Sum_probs=108.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhc-----CCCccEEEEeCCCCCCCHHHHHHHhccc-
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMS-----KNGYDIVISDVHMPDMDGFKLHEQVGLE- 88 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~-----~~~~dlvilD~~l~~~~g~~l~~~l~~~- 88 (184)
+++|+|+||++..+..+...|+..|+ .+..+.++.++++.+... ...||+||+|+.|++.+|+++++.++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 56899999999999999999999888 899999999999998731 0569999999999999999999999754
Q ss_pred --CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 89 --MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 89 --~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+.+|+|++++..+......+++.|+++|+.||++.++|..+++.+.+.
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 131 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEF 131 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHH
Confidence 578999999988888999999999999999999999999999988764
No 51
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.86 E-value=3.6e-21 Score=131.66 Aligned_cols=119 Identities=23% Similarity=0.370 Sum_probs=108.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~iI 94 (184)
++|+|+||++..+..++..|...|+.+..+.++.++++.+. ...||++|+|+.||+.+|+++++.++.. +++|+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~--~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN--EPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCS--SSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh--ccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 58999999999999999999998999999999999998876 4569999999999999999999999653 578999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
++++..+......+++.|+++|+.||++.++|...++.+.++..
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 124 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRIS 124 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCCC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhccc
Confidence 99988878888899999999999999999999999999887543
No 52
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.86 E-value=1.3e-20 Score=129.68 Aligned_cols=119 Identities=26% Similarity=0.416 Sum_probs=106.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-CCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc--cCCCCE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKC-LYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL--EMDLPV 93 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~-~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~--~~~~~i 93 (184)
++|+|+||++..+..++..|... |+.+. .+.++.++++.+.. ..||++|+|+.||+.+|+++++.++. .+..|+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~i 80 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE--KRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNV 80 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcE
Confidence 58999999999999999999987 78765 79999999999873 45999999999999999999999975 356789
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
|++++..+......+++.|+++|+.||++.++|..+++.+.++..
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 125 (130)
T 1dz3_A 81 IMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKTT 125 (130)
T ss_dssp EEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC-
T ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 999998888899999999999999999999999999999876543
No 53
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.86 E-value=2e-21 Score=151.92 Aligned_cols=118 Identities=18% Similarity=0.305 Sum_probs=106.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMP-DMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~-~~~g~~l~~~l~~~~~~~iI 94 (184)
..+|+++||++..+..++.+|+..||.+. .+.++.++++.+. ...||+||+|+.|| +++|+++++.++..+++|||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~--~~~~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI 237 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVT--RRTPGLVLADIQLADGSSGIDAVKDILGRMDVPVI 237 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--HCCCSEEEEESCCTTSCCTTTTTHHHHHHTTCCEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHH--hCCCCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEE
Confidence 35799999999999999999999999999 9999999999997 45699999999999 79999999999766699999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
++|+.. +....++++|+++|+.||++.++|..+++.++.+..
T Consensus 238 ~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 238 FITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp EEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSC
T ss_pred EEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 999864 456678999999999999999999999999987544
No 54
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.86 E-value=3.2e-20 Score=128.95 Aligned_cols=123 Identities=20% Similarity=0.313 Sum_probs=109.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCC-----CCCHHHHHHHhcc-cCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP-----DMDGFKLHEQVGL-EMD 90 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~-----~~~g~~l~~~l~~-~~~ 90 (184)
.++|+|+||++..+..+...|...|+.+..+.++.++++.+. ...||+||+|+.++ +.+|+++++.++. .+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLR--EENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHH--HSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHH--cCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 468999999999999999999999999999999999999987 35599999999999 9999999999964 468
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
+|||+++...+......+++.|+++|+.||++.++|..+++.++++.....
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~ 131 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAKDGK 131 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC----
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhccccc
Confidence 999999998888888999999999999999999999999999988765544
No 55
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.85 E-value=7.5e-21 Score=133.43 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=110.3
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcC-CeEEEECCHHHHHHHHHhcC-CCccEEEEeCCCCCCCHHHHHHHhcc-cCC
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCL-YEVTKCNRAEIALDMLRMSK-NGYDIVISDVHMPDMDGFKLHEQVGL-EMD 90 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~-~~v~~~~~~~~~~~~l~~~~-~~~dlvilD~~l~~~~g~~l~~~l~~-~~~ 90 (184)
...+.+|+||||++..+..+..+|...| |.+..+.++.+++..+.. . ..||+||+|+.|++.+|+++++.++. .+.
T Consensus 17 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~-~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 95 (146)
T 4dad_A 17 FQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTD-GLDAFDILMIDGAALDTAELAAIEKLSRLHPG 95 (146)
T ss_dssp CGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHH-HHTTCSEEEEECTTCCHHHHHHHHHHHHHCTT
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHh-cCCCCCEEEEeCCCCCccHHHHHHHHHHhCCC
Confidence 3346799999999999999999999988 999999998888776642 2 56999999999999999999999964 468
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
+|||+++...+......+++.|+++|+.||++.++|..+++.++++..
T Consensus 96 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 143 (146)
T 4dad_A 96 LTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQCA 143 (146)
T ss_dssp CEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTCC
T ss_pred CcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhhc
Confidence 999999999889999999999999999999999999999999988654
No 56
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.85 E-value=4e-20 Score=128.19 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=105.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cC----C
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EM----D 90 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~----~ 90 (184)
.+++|+|+||++..+..++..|+..|+.+..+.++.++++.+. .. +|++|+|+.||+.+|+++++.++. .+ .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--~~-~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 82 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS--HE-HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC--TT-CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh--cc-CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCC
Confidence 3679999999999999999999999999999999999998875 33 499999999999999999999962 22 2
Q ss_pred C-CEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCC
Q 029986 91 L-PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKP 139 (184)
Q Consensus 91 ~-~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~ 139 (184)
. +||++++..+......+++.|+++|+.||++.++|..+++.+.++...
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~~ 132 (136)
T 1dcf_A 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPRVL 132 (136)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCCCC
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchhhh
Confidence 3 477788888888888999999999999999999999999999876543
No 57
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.85 E-value=3.1e-20 Score=129.57 Aligned_cols=122 Identities=23% Similarity=0.314 Sum_probs=109.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iI 94 (184)
..++|+|+||++..+..+...|...|+.+..+.++.++++.+. ...||+||+|+ +++.+|+++++.++. .+.+|+|
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii 79 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR--REKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVA 79 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHT--TSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh--ccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEE
Confidence 3568999999999999999999999999999999999999987 56799999999 999999999999964 4679999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
+++...+......+++.|+++|+.||++.++|..+++.++++....
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 125 (142)
T 2qxy_A 80 VLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPRV 125 (142)
T ss_dssp EEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC----
T ss_pred EEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcccc
Confidence 9999888888999999999999999999999999999998865543
No 58
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.85 E-value=1.1e-21 Score=136.16 Aligned_cols=119 Identities=21% Similarity=0.172 Sum_probs=107.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcC-CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCL-YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPV 93 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~-~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~i 93 (184)
...+|+|+||++..+..++..|+..| |.+..+.++.++++.+. ...||+||+|+.||+.+|+++++.++.. +.+|+
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~--~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 90 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPA--DTRPGIVILDLGGGDLLGKPGIVEARALWATVPL 90 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCT--TCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHh--ccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcE
Confidence 45689999999999999999999999 99999999999998876 5679999999999999999999999644 58999
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
|++++..+......+++.|+++|+.||++.++|..+++.++++
T Consensus 91 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 91 IAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999899999999999999999999999999999887653
No 59
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.85 E-value=3.1e-20 Score=138.52 Aligned_cols=125 Identities=20% Similarity=0.382 Sum_probs=111.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-CCeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKC-LYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLP 92 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~-~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~ 92 (184)
..++|+||||++..+..+...|+.. ++.+ ..+.++.++++.+.. ..||+||+|+.||+.+|+++++.++. .+.+|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ 81 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMNGLETLDKLREKSLSGR 81 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEEETTSTTSCHHHHHHHHHHSCCCSE
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 3568999999999999999999986 4777 689999999999873 45999999999999999999999964 46889
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCCC
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFEE 142 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~~ 142 (184)
||+++...+......+++.|+++|+.||++.++|..+++.+.++...+.+
T Consensus 82 ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~ 131 (215)
T 1a04_A 82 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSE 131 (215)
T ss_dssp EEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCT
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCeecCH
Confidence 99999998899999999999999999999999999999999987665543
No 60
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.85 E-value=4.7e-20 Score=128.34 Aligned_cols=119 Identities=27% Similarity=0.437 Sum_probs=104.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~iI 94 (184)
++|+|+||++..+..++..|...|+.+..+.++.++++.+. ...||+||+|+.||+.+|+++++.++.. +.+|||
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 81 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALN--ATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVL 81 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHh--ccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 58999999999999999999999999999999999999987 3559999999999999999999999653 478999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
++++.........++..|+++|+.||++.++|..+++.+..+..
T Consensus 82 ~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (138)
T 3c3m_A 82 MLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRH 125 (138)
T ss_dssp EEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC-
T ss_pred EEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHhh
Confidence 99987665555566677789999999999999999999887544
No 61
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.85 E-value=6.6e-20 Score=128.37 Aligned_cols=121 Identities=21% Similarity=0.395 Sum_probs=109.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhcC--------CCccEEEEeCCCCCCCHHHHHHHh
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMSK--------NGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~~--------~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
.+++|+|+||++..+..++..|...|+ .+..+.++.++++.+.... ..||+||+|+.|++.+|+++++.+
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 84 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEI 84 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHH
Confidence 356899999999999999999999888 8999999999999987310 569999999999999999999999
Q ss_pred ccc---CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 86 GLE---MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 86 ~~~---~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+.. +.+|+|++++..+......+++.|+++|+.||++.++|..+++.+.+.
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 138 (149)
T 1k66_A 85 KQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKY 138 (149)
T ss_dssp TTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred HhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 754 578999999988888999999999999999999999999999988763
No 62
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.85 E-value=2e-20 Score=129.97 Aligned_cols=121 Identities=20% Similarity=0.268 Sum_probs=109.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHhcccCCCCE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMP-DMDGFKLHEQVGLEMDLPV 93 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~-~~~g~~l~~~l~~~~~~~i 93 (184)
..++|+|+||++..+..+...|+..|+.+. .+.++.++++.+.. ..||+||+|+.++ +.+|+++++.++..+.+||
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPD--LRPDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH--HCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHh--CCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 357999999999999999999999999998 59999999999874 4599999999998 7999999999965588999
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
|++++..+......+++.|+++|+.||++.++|..+++.++++..
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 130 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKK 130 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccc
Confidence 999998888888999999999999999999999999999887543
No 63
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.85 E-value=2.6e-20 Score=129.70 Aligned_cols=117 Identities=20% Similarity=0.368 Sum_probs=106.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~ 96 (184)
.+|+|+||++..+..++..|...|+.+..+.++.++++.+.. ..||++|+|+.||+.+|+++++.++. .+.+|+|++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER--SKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHH--HCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 379999999999999999999889999999999999999873 45999999999999999999999964 467899999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+...+......+++.|+++|+.||++.++|..+++.++++
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 9988888899999999999999999999999999888754
No 64
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.85 E-value=3.4e-20 Score=142.86 Aligned_cols=120 Identities=28% Similarity=0.337 Sum_probs=107.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLP 92 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~ 92 (184)
..++|+||||++..+..+...|...|+.+..+.++.++++.+.. ...||+||+|+.||+++|++++++++.. ..+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~-~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQ-HPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-CTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc-CCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 35799999999999999999999999999999999999999863 2348999999999999999999999753 2578
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
||+++...+.....++++.||++|+.||++.++|..+++.+++.
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~ 245 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEA 245 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHh
Confidence 99999988888999999999999999999999999999888654
No 65
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.85 E-value=2.4e-20 Score=138.25 Aligned_cols=118 Identities=25% Similarity=0.408 Sum_probs=107.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi 95 (184)
..+|+||||++..+..+...|...||.+. .+.++.++++.+.. ..||+||+|+.||+.+|+++++.++.....|||+
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~--~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~ 90 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL--HKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVV 90 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEE
Confidence 46899999999999999999999999987 89999999999873 4599999999999999999999997655569999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+++..+......+++.|+++|+.||++.++|..+++.++++
T Consensus 91 lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 131 (205)
T 1s8n_A 91 LTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSR 131 (205)
T ss_dssp EEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 99988888889999999999999999999999999988764
No 66
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.84 E-value=3.5e-20 Score=129.97 Aligned_cols=119 Identities=18% Similarity=0.307 Sum_probs=109.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc---cCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL---EMDLP 92 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~---~~~~~ 92 (184)
..++|+|+||++..+..+...|...|+.+..+.++.++++.+.. ..||+||+|+.+++.+|+++++.++. .+.+|
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVK--THPHLIITEANMPKISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHc--CCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 46789999999999999999999999999999999999999874 45999999999999999999999975 46899
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
||+++...+......+++.|+++|+.||++.++|..+++.++++
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 85 VIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999988888899999999999999999999999999988764
No 67
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.84 E-value=8.6e-20 Score=129.03 Aligned_cols=123 Identities=20% Similarity=0.331 Sum_probs=111.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh-cCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRK-CLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~-~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~i 93 (184)
+++|+|+||++..+..+...|.. .|+.+. .+.++.++++.+. ...||+||+|+.+++.+|+++++.++. .+.+||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~--~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 82 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYR--ETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARI 82 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHH--TTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHh--cCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeE
Confidence 56899999999999999999998 689887 8999999999987 556999999999999999999999964 468999
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
|+++...+......+++.|+++|+.||++.++|..+++.+.++...+.
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~~~ 130 (153)
T 3cz5_A 83 LIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRAMS 130 (153)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCCEEC
T ss_pred EEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCccCC
Confidence 999998888899999999999999999999999999999988766544
No 68
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.84 E-value=3.1e-20 Score=137.80 Aligned_cols=118 Identities=26% Similarity=0.387 Sum_probs=108.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi 95 (184)
..+|+||||++..+..+...|...|+.+..+.++.++++.+. ...||+||+|+.||+.+|+++++.++. .+.+|||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 81 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRR--PEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVF 81 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCC--TTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhh--ccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 458999999999999999999998999999999999999876 566999999999999999999999964 46899999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+++..+......+++.|+++|+.||++.++|..+++.++++
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 99988888899999999999999999999999999988764
No 69
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.84 E-value=4.2e-20 Score=138.53 Aligned_cols=122 Identities=26% Similarity=0.461 Sum_probs=111.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi 95 (184)
+++|+|+||++..+..+...|...|+.+..+.++.++++.+. ...||++|+|+.||+.+|+++++.++. .+++|||+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMAL--NEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999999999999999999999999999987 456999999999999999999999964 46899999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
+++..+......+++.|+++|+.||++.++|..+++.+.++....
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~ 124 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSES 124 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCCS
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcccc
Confidence 999888888899999999999999999999999999998765443
No 70
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.84 E-value=9.3e-20 Score=128.68 Aligned_cols=119 Identities=25% Similarity=0.439 Sum_probs=107.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iI 94 (184)
.+++|+||||++..+..+...|+. |+.+..+.++.++++.+... ..||+||+|+.|++.+|+++++.++. .+.+|||
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 80 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKS-DPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYL 80 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHS-CCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEE
Confidence 357899999999999999999976 89999999999999998742 23599999999999999999999964 4789999
Q ss_pred EEEccCChHHHHHHHHcC-CCceEeCCCCHHHHHHHHHHHHcC
Q 029986 95 MMSVDGCTQDVMKGVTHG-ACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~g-a~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
++++..+......++..| +++|+.||++.++|..+++.++++
T Consensus 81 ~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 81 MLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp EEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHH
Confidence 999988888899999999 999999999999999999988764
No 71
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.84 E-value=6.4e-20 Score=123.56 Aligned_cols=113 Identities=26% Similarity=0.445 Sum_probs=100.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~ 96 (184)
++|+|+||++..+..++..|...|+.+..+.++.++++.+. ...||++|+|+.||+.+|+++++.++. .+.+|+|++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~--~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFF--SGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--cCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 47999999999999999999999999999999999999987 356999999999999999999999964 467899999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
++..+.. ..+++.|+++|+.||++.++|..+++.++
T Consensus 80 s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 80 TAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 8765444 67888999999999999999999988764
No 72
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.84 E-value=2.2e-19 Score=127.02 Aligned_cols=119 Identities=25% Similarity=0.370 Sum_probs=108.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iI 94 (184)
.+++|+||||++..+..+...|...|+.+..+.++.++++.+. ...||+||+|+.+++.+|+++++.++. .+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK--GTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHT--TSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh--cCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 3678999999999999999999999999999999999999987 456999999999999999999999964 4689999
Q ss_pred EEEccCChHHHHHHHHcC-CCceEeCCCCHHHHHHHHHHHHcC
Q 029986 95 MMSVDGCTQDVMKGVTHG-ACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~g-a~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+++...+......++..| +++|+.||++.++|..+++.++++
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 999888888888999998 999999999999999999988764
No 73
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.83 E-value=1.3e-19 Score=139.16 Aligned_cols=118 Identities=32% Similarity=0.537 Sum_probs=108.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iI 94 (184)
.+++|+||||++..+..+...|+..||.+..+.++.++++.+. ...||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~--~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI 205 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS--KNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVI 205 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHH--HSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--hCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 3679999999999999999999999999999999999999987 355999999999999999999999964 4689999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
++++....+....+++.|+++|+.||++.++|..+++.+.+
T Consensus 206 ~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 206 GVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp EEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 99998888899999999999999999999999999988765
No 74
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.83 E-value=2.6e-19 Score=124.82 Aligned_cols=122 Identities=18% Similarity=0.320 Sum_probs=107.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhc----CCCccEEEEeCCCCCCCHHHHHHHhccc-
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMS----KNGYDIVISDVHMPDMDGFKLHEQVGLE- 88 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~----~~~~dlvilD~~l~~~~g~~l~~~l~~~- 88 (184)
..++|+|+||++..+..+...|...|+ .+..+.++.++++.+... ...||+||+|+.+++.+|+++++.++..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 85 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS 85 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc
Confidence 356899999999999999999998887 899999999999998731 1569999999999999999999999754
Q ss_pred --CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 89 --MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 89 --~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
+.+|+|+++...+......+++.|+++|+.||++.++|..++.......
T Consensus 86 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~~ 136 (143)
T 2qvg_A 86 SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSME 136 (143)
T ss_dssp GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC-
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhh
Confidence 6889999999888888999999999999999999999999887765543
No 75
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.83 E-value=9.2e-20 Score=137.21 Aligned_cols=120 Identities=29% Similarity=0.408 Sum_probs=110.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMM 96 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~ 96 (184)
.++|+||||++..+..+...|...|+.+..+.++.++++.+.. ..||++|+|+.||+.+|+++++.++..+.+|||++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~l 81 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDR--AGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMV 81 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 3689999999999999999999989999999999999999873 45999999999999999999999976688999999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
++..+......+++.|+++|+.||++.++|..+++.++++..
T Consensus 82 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 123 (230)
T 2oqr_A 82 TARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGG 123 (230)
T ss_dssp ECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTTT
T ss_pred eCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 988777888899999999999999999999999999988754
No 76
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.83 E-value=2.5e-20 Score=150.40 Aligned_cols=117 Identities=25% Similarity=0.372 Sum_probs=108.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEEE
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMMS 97 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~~ 97 (184)
+|+||||++..+..++.+|+..||.+..+.++.++++.+. ...||+||+|+.||+++|+++++.++. .+.+|||++|
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~--~~~~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT 79 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIK--ELFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVIT 79 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HBCCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--hCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEe
Confidence 7999999999999999999999999999999999999987 456999999999999999999999964 4789999999
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
+..+.+...++++.||++|+.||++.++|..+++.++.+.
T Consensus 80 ~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 119 (368)
T 3dzd_A 80 GHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEY 119 (368)
T ss_dssp CSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 9998999999999999999999999999999999887643
No 77
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.83 E-value=2e-20 Score=130.31 Aligned_cols=120 Identities=19% Similarity=0.287 Sum_probs=99.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCCE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~i 93 (184)
.++|+|+||++..+..+..+|+.. +.+..+.++.++++.+.. ..||+||+|+.|++.+|+++++.++.. +.+|+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDH--HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHH--HCCSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 468999999999999999999987 999999999999999874 459999999999999999999999654 68899
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKP 139 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~ 139 (184)
|+++...+.+...++++.|+++|+.||++.++|..+++.++++..+
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence 9999988888888999999999999999999999999999876543
No 78
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.83 E-value=9.8e-20 Score=128.77 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=102.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-CC-eEEEECCHHHHHHHHHhcC-CCccEEEEeCCCCCCCHHHHHHHhcc-cCCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC-LY-EVTKCNRAEIALDMLRMSK-NGYDIVISDVHMPDMDGFKLHEQVGL-EMDLP 92 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~-~~-~v~~~~~~~~~~~~l~~~~-~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~ 92 (184)
.++|+|+||++..+..+...|... |+ .+..+.++.++++.+. . ..||+||+|+.+++.+|+++++.++. .+.+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~--~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 80 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLE--ADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNA 80 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHH--TTCCCSEEEECC------CHHHHHHHHHHCTTSE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHh--ccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCe
Confidence 468999999999999999999987 77 6889999999999987 4 66999999999999999999999964 46889
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCCC
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFEE 142 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~~ 142 (184)
||+++...+......+++.|+++|+.||++.++|..+++.+.++...+++
T Consensus 81 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~~~~ 130 (154)
T 2qsj_A 81 VALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFLPR 130 (154)
T ss_dssp EEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCBCCG
T ss_pred EEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEEcCH
Confidence 99999888888899999999999999999999999999999988776554
No 79
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.83 E-value=4.6e-20 Score=128.56 Aligned_cols=119 Identities=20% Similarity=0.339 Sum_probs=108.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc---cCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL---EMDLP 92 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~---~~~~~ 92 (184)
..++|+|+||++..+..+...|...|+.+..+.++.++++.+. ...||+||+|+.+++.+|+++++.++. .+.+|
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK--KGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--TCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 4678999999999999999999999999999999999999987 556999999999999999999999965 46789
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
||+++...+......+++.|+++|+.||++.++|..+++.++++
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 84 IVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999888778888899999999999999999999999988764
No 80
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.83 E-value=1.9e-19 Score=127.56 Aligned_cols=119 Identities=27% Similarity=0.421 Sum_probs=107.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iI 94 (184)
.+++|+|+||++..+..+...|...|+.+..+.++.++++.+. ...||+||+|+.+++.+|+++++.++. .+.+|||
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii 79 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLS--ADFAGIVISDIRMPGMDGLALFRKILALDPDLPMI 79 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCC--TTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHH--hCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 3568999999999999999999999999999999999999876 456999999999999999999999964 4689999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+++...+......+++.|+++|+.||++.++|..+++.+..+
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 999988888889999999999999999999999999988764
No 81
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.83 E-value=1e-19 Score=137.99 Aligned_cols=120 Identities=28% Similarity=0.438 Sum_probs=110.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
++|+||||++..+..+...|+..|+.+..+.++.++++.+.. ..||+||+|+.||+.+|+++++.++..+.+|||+++
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt 83 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE--LRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLT 83 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEe
Confidence 589999999999999999999989999999999999999873 459999999999999999999999766689999999
Q ss_pred ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCC
Q 029986 98 VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKP 139 (184)
Q Consensus 98 ~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~ 139 (184)
...+......+++.|+++|+.||++.++|..+++.++++...
T Consensus 84 ~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 125 (238)
T 2gwr_A 84 AKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125 (238)
T ss_dssp ETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSS
T ss_pred CCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhccc
Confidence 988888889999999999999999999999999999887644
No 82
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.83 E-value=9.1e-20 Score=127.51 Aligned_cols=116 Identities=25% Similarity=0.340 Sum_probs=98.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHh--cCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRK--CLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPV 93 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~--~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~i 93 (184)
++|+|+||++..+..+...|.. .|+.+. .+.++.++++.+. ...||++|+|+.||+.+|+++++.++. .+.+|+
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~--~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~i 80 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIAL--KHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSV 80 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHT--TSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Confidence 5899999999999999999974 477766 8999999999886 456999999999999999999999964 468899
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
|++++..+......+++.|+++|+.||++.++|..+++.+.+
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 81 IFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp EEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 999988877888899999999999999999999999988765
No 83
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.83 E-value=2e-19 Score=122.47 Aligned_cols=116 Identities=15% Similarity=0.266 Sum_probs=105.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHhccc---CCCCE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMP-DMDGFKLHEQVGLE---MDLPV 93 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~-~~~g~~l~~~l~~~---~~~~i 93 (184)
++|+|+||++..+..+...|...|+.+..+.++.++++.+.. ..||++|+|+.++ +.+|+++++.++.. +.+|+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRR--DRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHH--HCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHh--cCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 589999999999999999999999999999999999999874 4599999999999 99999999999654 68899
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
|++ +..+......+++.|+++|+.||++.++|...++.+++.
T Consensus 84 i~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 84 VII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp EEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred EEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 999 777778888999999999999999999999999988763
No 84
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.83 E-value=3.9e-20 Score=127.64 Aligned_cols=122 Identities=21% Similarity=0.299 Sum_probs=105.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi 95 (184)
.++|+|+||++..+..++..|+..++.+..+.+.++++..+. .. ||+||+|+.|++.+|+++++.++. .+.+|+|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSL--NK-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLIL 79 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCC--CT-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhc--cC-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 468999999999999999999988889999999999988765 45 999999999999999999999964 46889999
Q ss_pred EEccCCh-----HHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 96 MSVDGCT-----QDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 96 ~~~~~~~-----~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
+++..+. .....+++.|+++|+.||++.++|..+++.+..+....+
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~~~~ 130 (135)
T 3eqz_A 80 ISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQAEGH 130 (135)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC----
T ss_pred EEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhccccc
Confidence 9887664 566678999999999999999999999999987765443
No 85
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.82 E-value=6.4e-20 Score=128.58 Aligned_cols=120 Identities=21% Similarity=0.324 Sum_probs=98.8
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhc-CCeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCC
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKC-LYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDL 91 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~-~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~ 91 (184)
.+++.+|+|+||++..+..++.+|+.. |+.+ ..+.++.++++.+... ..||+||+|+.||+.+|+++++.++.....
T Consensus 10 ~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~~~g~~~~~~lr~~~~~ 88 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQ-PNVDLILLDIEMPVMDGMEFLRHAKLKTRA 88 (145)
T ss_dssp -CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHC-TTCCEEEECTTSCCCTTCHHHHHHHHHCCC
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 344568999999999999999999987 8875 4899999999998732 269999999999999999999999766668
Q ss_pred CEEEEEc--cCChHHHHHHHHcCCCceEeCCCC----------HHHHHHHHHHHH
Q 029986 92 PVIMMSV--DGCTQDVMKGVTHGACNYLLKPIR----------IKELRNIWQHVA 134 (184)
Q Consensus 92 ~iIi~~~--~~~~~~~~~a~~~ga~~~l~kP~~----------~~~l~~~l~~~~ 134 (184)
|+++++. ..+......+++.|+++|+.||++ ..++.++++.++
T Consensus 89 ~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~l~~~i~~~~ 143 (145)
T 3kyj_B 89 KICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEEKTGGELARTMRTLM 143 (145)
T ss_dssp EEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------CTTHHHHHHHHHHH
T ss_pred CeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888886 455667789999999999999998 455565555554
No 86
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.82 E-value=1.7e-19 Score=125.71 Aligned_cols=121 Identities=23% Similarity=0.376 Sum_probs=100.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc------cCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL------EMD 90 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~------~~~ 90 (184)
.++|+|+||++..+..+...|...|+.+..+.++.++++.+. ...||++|+|+.||+.+|+++++.++. .+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~--~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQ--NRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHH--HSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHh--cCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 358999999999999999999988999999999999999987 355999999999999999999999964 257
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCCC
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFEE 142 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~~ 142 (184)
+|+++++......... +.|+++|+.||++.++|..+++.+..+..+++.
T Consensus 88 ~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~~~~~~ 136 (140)
T 3c97_A 88 ASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEGAEGHH 136 (140)
T ss_dssp CCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC-------
T ss_pred eEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCCCCCcc
Confidence 8899988755443332 789999999999999999999999887665543
No 87
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.82 E-value=1.2e-19 Score=136.73 Aligned_cols=120 Identities=32% Similarity=0.447 Sum_probs=109.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi 95 (184)
.++|+|+||++..+..+...|...|+.+..+.++.++++.+. ...||++|+|+.||+.+|+++++.++. .+.+|||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSAT--ENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCV 84 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH--hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999999999999999999999999999987 356999999999999999999999964 46899999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
++...+......+++.|+++|+.||++.++|..+++.++++..
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9998888888899999999999999999999999999887643
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.82 E-value=3e-19 Score=145.02 Aligned_cols=116 Identities=22% Similarity=0.455 Sum_probs=107.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~ 96 (184)
++|+||||++..+..++..|...||.+..+.++.++++.+. ...||+||+|+.||+++|+++++.++. .+++|||++
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~--~~~~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS--EKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHH--HSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH--hCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 57999999999999999999988999999999999999987 456999999999999999999999964 478999999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
|...+.+...++++.||++|+.||++.++|..+++.++.
T Consensus 79 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~ 117 (387)
T 1ny5_A 79 TGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIE 117 (387)
T ss_dssp EETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHH
Confidence 999989999999999999999999999999998888765
No 89
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.82 E-value=9.2e-19 Score=121.39 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=105.9
Q ss_pred ccCCCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccC-C
Q 029986 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEM-D 90 (184)
Q Consensus 12 ~~~~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~-~ 90 (184)
.....+.+|+|+||++..+..+...|...|+.+..+.++.++++.+. ...||++| +++.+|+++++.++..+ .
T Consensus 13 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--~~~~dlvi----~~~~~g~~~~~~l~~~~~~ 86 (137)
T 2pln_A 13 LVPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD--IRNYDLVM----VSDKNALSFVSRIKEKHSS 86 (137)
T ss_dssp --CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH--HSCCSEEE----ECSTTHHHHHHHHHHHSTT
T ss_pred ccCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHH--cCCCCEEE----EcCccHHHHHHHHHhcCCC
Confidence 44445779999999999999999999999999999999999999987 35699999 88999999999996547 7
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCC-CHHHHHHHHHHHHcC
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPI-RIKELRNIWQHVAQQ 136 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~-~~~~l~~~l~~~~~~ 136 (184)
+|||+++...+......+++.|+++|+.||+ +.++|..+++.++++
T Consensus 87 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 87 IVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred ccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 9999999988888999999999999999999 999999999988764
No 90
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.82 E-value=1.2e-18 Score=119.70 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=105.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCC-CccEEEEeCCCCC-CCHHHHHHHhcc-cCCCCE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN-GYDIVISDVHMPD-MDGFKLHEQVGL-EMDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~-~~dlvilD~~l~~-~~g~~l~~~l~~-~~~~~i 93 (184)
+++|+|+||++..+..+...|...|+.+..+.++.++++.+. .. .||++|+|+.+++ .+|+++++.++. .+.+|+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~i 82 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLK--SGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPI 82 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--TTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--cCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCE
Confidence 568999999999999999999998999999999999999987 44 6999999999997 999999999964 468999
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
|+++...+......++..| +|+.||++.++|..+++.+..+....+
T Consensus 83 i~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~~~~ 128 (132)
T 2rdm_A 83 VYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAREGHH 128 (132)
T ss_dssp EEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC---
T ss_pred EEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCCCCC
Confidence 9999888777777776665 799999999999999999988765443
No 91
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.81 E-value=7.1e-19 Score=122.36 Aligned_cols=115 Identities=23% Similarity=0.344 Sum_probs=102.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEEE
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMMS 97 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~~ 97 (184)
+|+|+||++..+..++..|... +.+..+.++.++++.+. ...||++|+|+.||+.+|+++++.++. .+.+|+|+++
T Consensus 3 ~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~--~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s 79 (139)
T 2jk1_A 3 AILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILE--EEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIIT 79 (139)
T ss_dssp EEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHH--HSCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEE
T ss_pred eEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHh--cCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEe
Confidence 7999999999999999999875 88999999999999987 345999999999999999999999964 4678999999
Q ss_pred ccCChHHHHHHHHc-CCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 98 VDGCTQDVMKGVTH-GACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 98 ~~~~~~~~~~a~~~-ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+..+......++.. |+++|+.||++.++|..+++.+.++
T Consensus 80 ~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 119 (139)
T 2jk1_A 80 GYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARM 119 (139)
T ss_dssp SCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHH
Confidence 88877788888876 5999999999999999999988653
No 92
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.81 E-value=1.6e-19 Score=146.61 Aligned_cols=117 Identities=25% Similarity=0.481 Sum_probs=103.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi 95 (184)
+++|+||||++..+..++.+|+..|+.+..+.++.++++.+. ...||+||+|+.||+++|++++++++. .+++|||+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~--~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~ 82 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFE--SEQPDLVICDLRMPQIDGLELIRRIRQTASETPIIV 82 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHH--HSCCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh--hCCCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEE
Confidence 468999999999999999999999999999999999999987 456999999999999999999999964 46899999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCC-CHHHHHHHHHHHHc
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPI-RIKELRNIWQHVAQ 135 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~-~~~~l~~~l~~~~~ 135 (184)
+|+..+.+...++++.|+++|+.||+ ..+.|..+++.+++
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~ 123 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALD 123 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHh
Confidence 99988889999999999999999999 67888888777664
No 93
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.81 E-value=7.9e-19 Score=125.87 Aligned_cols=119 Identities=21% Similarity=0.258 Sum_probs=101.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC-C-eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCL-Y-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~-~-~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iI 94 (184)
.++|+||||++..+..++..|...+ + .+..+.++.++++.+.. ..||+||+|+.|++.+|+++++.++.....|+|
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlvilD~~l~~~~g~~l~~~lr~~~~~~ii 102 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIE--LKPDVITMDIEMPNLNGIEALKLIMKKAPTRVI 102 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHHSCCEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhcc--CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceEE
Confidence 5689999999999999999999874 3 35579999999999874 459999999999999999999999765558999
Q ss_pred EEEccCChH--HHHHHHHcCCCceEeCCCC---------HHHHHHHHHHHHcCC
Q 029986 95 MMSVDGCTQ--DVMKGVTHGACNYLLKPIR---------IKELRNIWQHVAQQP 137 (184)
Q Consensus 95 i~~~~~~~~--~~~~a~~~ga~~~l~kP~~---------~~~l~~~l~~~~~~~ 137 (184)
+++...+.. ....+++.|+++|+.||++ .+++...++.++...
T Consensus 103 ~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~~ 156 (164)
T 3t8y_A 103 MVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNVD 156 (164)
T ss_dssp EEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTSC
T ss_pred EEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCCC
Confidence 998866543 6778999999999999999 678888888776643
No 94
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.81 E-value=3.8e-20 Score=139.28 Aligned_cols=124 Identities=9% Similarity=-0.034 Sum_probs=105.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHh-cCCeEEE-ECCHHHHHH-HHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc--cCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRK-CLYEVTK-CNRAEIALD-MLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL--EMD 90 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~-~~~~v~~-~~~~~~~~~-~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~--~~~ 90 (184)
..++|+||||++..+..++.+|+. .|+.+.. +.++.++.. .+. ...||+||+|+.||+++|+++++.++. .++
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~--~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 83 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPE--SRSIQMLVIDYSRISDDVLTDYSSFKHISCPD 83 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSG--GGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTT
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhh--ccCCCEEEEeCCCCCCCHHHHHHHHHHhhCCC
Confidence 467999999999999999999985 5887754 344444443 343 456999999999999999999999975 578
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
+|||++|+..+......+++.||++|+.||++.++|..+++.++++..+++
T Consensus 84 ~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~ 134 (225)
T 3klo_A 84 AKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLT 134 (225)
T ss_dssp CEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCC
T ss_pred CcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEeeC
Confidence 999999998888888899999999999999999999999999998876554
No 95
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.81 E-value=4.6e-19 Score=118.97 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=101.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~iI 94 (184)
.+|+|+|+++..+..+...|...|+.+..+.+..++++.+.. ..||++|+|+.+++.+|+++++.++.. +.+|+|
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~--~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDL--LQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--HCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 589999999999999999999999999999999999999874 459999999999999999999999654 678999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
+++...... .++..|+++|+.||++.++|...++.+..
T Consensus 80 ~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 80 LFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp EEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred EEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 998776555 88999999999999999999998887644
No 96
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.80 E-value=7e-19 Score=145.23 Aligned_cols=116 Identities=32% Similarity=0.466 Sum_probs=106.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~iI 94 (184)
.+|+||||++..+..+...|...|+.+..+.++.++++.+.. ..||+||+|+.||+++|+++++.++.. +++|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR--DLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 479999999999999999999989999999999999999873 459999999999999999999999753 478999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
++|+..+......+++.||++|+.||++.++|..+++.+.+
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~ 120 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTR 120 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 99999989999999999999999999999999998887754
No 97
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.80 E-value=5.5e-20 Score=138.53 Aligned_cols=121 Identities=21% Similarity=0.320 Sum_probs=108.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC-Ce-EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCL-YE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~-~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iI 94 (184)
++|+||||++..+..+...|...| +. +..+.++.++++.+.. ..||+||+|+.||+.+|+++++.++. .+.+|||
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~--~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 79 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPA--ARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCL 79 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh--cCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 689999999999999999999876 77 4579999999999873 45999999999999999999999964 4789999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
++++..+......+++.|+++|+.||++.++|..+++.+.++...+
T Consensus 80 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~ 125 (225)
T 3c3w_A 80 ILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLL 125 (225)
T ss_dssp EGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCeee
Confidence 9999888899999999999999999999999999999998875544
No 98
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.79 E-value=1e-18 Score=130.65 Aligned_cols=116 Identities=24% Similarity=0.356 Sum_probs=106.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi~ 96 (184)
++|+|+||++..+..+...|...| .+..+.++.++++.+ ..||++|+|+.||+.+|+++++.++.. +.+|||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~----~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 77 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE----EAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILL 77 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC----SCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 589999999999999999999888 888999999998765 459999999999999999999999754 78999999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
+...+......+++.|+++|+.||++.++|..+++.++++..
T Consensus 78 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 119 (220)
T 1p2f_A 78 TLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREK 119 (220)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCC
T ss_pred EcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcccc
Confidence 999888899999999999999999999999999999987643
No 99
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.79 E-value=6.4e-18 Score=117.83 Aligned_cols=117 Identities=19% Similarity=0.344 Sum_probs=99.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-CCe-EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccC-CCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKC-LYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEM-DLP 92 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~-~~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~-~~~ 92 (184)
..++|+|+||++..+..+...|... ++. +..+.++.++++.+.. ..||+||+|+.+++.+|+++++.++... ..|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH--NKVDAIFLDINIPSLDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHH--CCCSEEEECSSCSSSCHHHHHHHHTTSTTCCE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh--CCCCEEEEecCCCCCCHHHHHHHHHccCCCce
Confidence 3579999999999999999999876 787 4589999999999873 4599999999999999999999997554 556
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
||+++.. .+....+++.|+++|+.||++.++|..+++.+.++
T Consensus 86 ii~~s~~--~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 86 IVFITAW--KEHAVEAFELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp EEEEESC--CTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCC--HHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 7878765 34677899999999999999999999999988753
No 100
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.78 E-value=3.7e-18 Score=127.88 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=105.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccC-CCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEM-DLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~-~~~iIi~ 96 (184)
|+|+||||++..+..+...|...|+.+..+.++.++++.+. ...||++| ||+.+|+++++.++..+ ++|||++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--~~~~dlvi----lp~~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD--IRNYDLVM----VSDKNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHT--TSCCSEEE----ECCTTHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHh--cCCCCEEE----eCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 57999999999999999999999999999999999999987 55699999 89999999999996556 8999999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCC-CHHHHHHHHHHHHcCC
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPI-RIKELRNIWQHVAQQP 137 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~-~~~~l~~~l~~~~~~~ 137 (184)
++..+......+++.||++|+.||+ +.++|..+++.++++.
T Consensus 75 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 9998899999999999999999999 9999999999998875
No 101
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.77 E-value=2.4e-18 Score=137.62 Aligned_cols=115 Identities=22% Similarity=0.296 Sum_probs=103.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh-cCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRK-CLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLP 92 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~ 92 (184)
..+|+||||++..+..++..|.. .|+.+..+.++.++++.+.. ..||+||+|+.||+++|+++++.++.. +.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQ--IKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHH--HCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 35799999999999999999974 58999999999999999873 459999999999999999999999753 4789
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
||++|+..+......+++.|+++|+.||++.++|..++..+
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~ 136 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYH 136 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHH
Confidence 99999998899999999999999999999999998888765
No 102
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.77 E-value=2.7e-18 Score=119.13 Aligned_cols=116 Identities=21% Similarity=0.236 Sum_probs=99.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcC-CCccEEEEeCCCCCCCHHHHHHHhcc-cCCCC
Q 029986 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSK-NGYDIVISDVHMPDMDGFKLHEQVGL-EMDLP 92 (184)
Q Consensus 15 ~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~-~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~ 92 (184)
++..+|+|+||++..+..++..|+..|+.+..+.++.++++.+. . ..||++|+|+.|++.+|+++++.++. .+.+|
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ 90 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRS--QLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPS 90 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGG--GGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHH--hCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCC
Confidence 34679999999999999999999999999999999999999886 4 46999999999999999999999965 36889
Q ss_pred EEEEE-ccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 93 VIMMS-VDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 93 iIi~~-~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+|+++ ...+... ..++ +++|+.||++.++|..+++.++++
T Consensus 91 ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 91 VLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp EEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHh
Confidence 99998 7665555 5555 999999999999999999987654
No 103
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.77 E-value=3e-20 Score=126.26 Aligned_cols=118 Identities=30% Similarity=0.409 Sum_probs=105.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi 95 (184)
..+|+|+||++..+..+...|...|+.+..+.++.++++.+. ...||++|+|+.+++.+|+++++.++. .+.+|+|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA--SKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII 80 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSS--SCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh--cCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEE
Confidence 347999999999999999999988999999999999999876 456999999999999999999999964 46889999
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+++..+......+++.|+++|+.||++.++|..+++.+.++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 121 (124)
T 1dc7_A 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (124)
T ss_dssp BCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHh
Confidence 99887778888999999999999999999999999988764
No 104
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.77 E-value=1.4e-18 Score=127.78 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=100.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVI 94 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iI 94 (184)
.+++|+||||++..+..+...|...||.+..+.++.+++ ...||+||+|+.||+++|+ +++.++.. +++|+|
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al------~~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii 83 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF------DVPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLV 83 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC------SSCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC------CCCCCEEEEeCCCCccchH-HHHHHhccCCCCCEE
Confidence 367999999999999999999998899988887766544 2459999999999999998 88888755 789999
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
++++..+.+....+++.|+++|+.||++.++|..+++.+..+
T Consensus 84 ~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 125 (196)
T 1qo0_D 84 ALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRI 125 (196)
T ss_dssp EEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHH
T ss_pred EEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHH
Confidence 999998899999999999999999999999999999877653
No 105
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.76 E-value=2.1e-18 Score=140.46 Aligned_cols=121 Identities=21% Similarity=0.279 Sum_probs=102.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh-cCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccC-CCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRK-CLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEM-DLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~-~~~iI 94 (184)
.++|+||||++..+..++..|+. .++.+..+.++.++++.+... ..||+||+|+.||+++|+++++.++... ..+||
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii 81 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDGLAFLRHASLSGKVHSVI 81 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 36899999999999999999998 578899999999999998731 3599999999999999999999997554 44555
Q ss_pred EEEccCCh-----HHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 95 MMSVDGCT-----QDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 95 i~~~~~~~-----~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
+++..... ....++++.|+++|+.||++.++|..+++.+.....
T Consensus 82 ~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 82 LSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp ESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred EEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 55555444 456788999999999999999999999999876543
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.73 E-value=6.7e-17 Score=129.47 Aligned_cols=119 Identities=24% Similarity=0.370 Sum_probs=102.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-CCe-EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC-LYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~-~~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iI 94 (184)
.++|+||||++..++.++..|+.. +++ +..+.++.++++.+.. ..||++++|+.||+++|+++++.++....+|||
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~--~~pDlVllDi~mp~~dGlell~~l~~~~p~pVI 80 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK--FNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV 80 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEECCCSSSCHHHHHHHHHHSSCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhc--cCCCEEEEECCCCCCCHHHHHHHHHhcCCCcEE
Confidence 468999999999999999999986 888 5699999999999873 459999999999999999999999755459999
Q ss_pred EEEccCCh--HHHHHHHHcCCCceEeCCCCH---------HHHHHHHHHHHcCC
Q 029986 95 MMSVDGCT--QDVMKGVTHGACNYLLKPIRI---------KELRNIWQHVAQQP 137 (184)
Q Consensus 95 i~~~~~~~--~~~~~a~~~ga~~~l~kP~~~---------~~l~~~l~~~~~~~ 137 (184)
++++..+. +...++++.|+++|+.||++. ++|...++.+.+..
T Consensus 81 vlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~ 134 (349)
T 1a2o_A 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARAR 134 (349)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCC
T ss_pred EEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhh
Confidence 99876654 347889999999999999983 78888888776643
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.69 E-value=6e-17 Score=124.62 Aligned_cols=102 Identities=18% Similarity=0.262 Sum_probs=85.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-CCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKC-LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~ 96 (184)
.+|+||||++..++.+...|... |+.+..+.. .++...+. ...||+||+|+.||+++|++++++++. ..+|||++
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~~~-~~~~~~~~--~~~~dlvllD~~mP~~~G~~~~~~lr~-~~~pvi~l 80 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDAFDT-LEGARHCQ--GDEYVVALVDLTLPDAPSGEAVKVLLE-RGLPVVIL 80 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEEESS-TGGGTTCC--TTTEEEEEEESCBTTBTTSHHHHHHHH-TTCCEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEEeCh-HHHHHHhh--cCCCcEEEEeCCCCCCCHHHHHHHHHh-CCCCEEEE
Confidence 48999999999999999999764 787765544 44444433 456999999999999999999999975 36899999
Q ss_pred EccCChHHHHHHHHcCCCceEeCCCCH
Q 029986 97 SVDGCTQDVMKGVTHGACNYLLKPIRI 123 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~kP~~~ 123 (184)
|+..+.+....++++||++|+.||...
T Consensus 81 t~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 81 TADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp ECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 999999999999999999999999743
No 108
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.66 E-value=1.6e-16 Score=138.51 Aligned_cols=117 Identities=12% Similarity=0.120 Sum_probs=103.6
Q ss_pred CeEEEEeCCH-HH-------HHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCC-CccEEEEeCCCCC----CCHHHHHHH
Q 029986 18 LRVLVVDDDP-IW-------LRILEKMLRKCLYEVTKCNRAEIALDMLRMSKN-GYDIVISDVHMPD----MDGFKLHEQ 84 (184)
Q Consensus 18 ~~Ilivdd~~-~~-------~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~-~~dlvilD~~l~~----~~g~~l~~~ 84 (184)
|+||||||++ .. ++.|+..|+..||+|..+.++++++..+. .. .||+||+|+.||+ ++|++++++
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~--~~~~~d~vilDi~lp~~~~~~~G~~ll~~ 78 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILS--SNEAIDCLMFSYQMEHPDEHQNVRQLIGK 78 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT--TTCCCSEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh--cCCCCcEEEEeCCCCcccccccHHHHHHH
Confidence 4899999999 88 99999999999999999999999999986 34 4999999999999 999999999
Q ss_pred hccc-CCCCEEEEEccCC-hHHHHHHHHcCCCceEeCCCCHHH-HHHHHHHHHcC
Q 029986 85 VGLE-MDLPVIMMSVDGC-TQDVMKGVTHGACNYLLKPIRIKE-LRNIWQHVAQQ 136 (184)
Q Consensus 85 l~~~-~~~~iIi~~~~~~-~~~~~~a~~~ga~~~l~kP~~~~~-l~~~l~~~~~~ 136 (184)
+++. +.+||+++|...+ .+.....+..|++||+.||++..+ +...++.++++
T Consensus 79 iR~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr 133 (755)
T 2vyc_A 79 LHERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTR 133 (755)
T ss_dssp HHHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHH
Confidence 9755 5899999998765 566778899999999999999999 77777777654
No 109
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.07 E-value=1e-10 Score=87.65 Aligned_cols=92 Identities=18% Similarity=0.264 Sum_probs=74.1
Q ss_pred CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEeCC
Q 029986 42 YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120 (184)
Q Consensus 42 ~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP 120 (184)
+.|..+.++.++++.+.. ..||++|+|+.||+++|+++++.++.. +..++++++.....+....+++.|+++|+.||
T Consensus 6 ~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKE--LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp EEEECCCSSSTTHHHHHH--HCCSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESH
T ss_pred EEEEECCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCC
Confidence 455567788888888873 459999999999999999999998643 45667777666667888899999999999999
Q ss_pred --CCHHHHHHHHHHHHc
Q 029986 121 --IRIKELRNIWQHVAQ 135 (184)
Q Consensus 121 --~~~~~l~~~l~~~~~ 135 (184)
++..++...+.....
T Consensus 84 ~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 84 AAVENPSLITQIAQTFG 100 (237)
T ss_dssp HHHHCTHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHHhC
Confidence 666777777776654
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.03 E-value=1.7e-08 Score=83.00 Aligned_cols=115 Identities=24% Similarity=0.254 Sum_probs=94.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---CCCCE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---MDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~~~~i 93 (184)
..+|++++|+......+...|... +.+....+..++.. .. ...||++++|..||+++|+++++.++.. ...|+
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~~-~~~~~~~~~~~~~~-~~--~~~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pi 227 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKAKI-SA--GGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPV 227 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTTT-SEEEEECCHHHHHH-HH--HSSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCE
T ss_pred CCeEEEECCchhhHHHHHHHHhcc-cceeeccCHHHHhh-hc--cCCCCEEEEecCCCCCcHHHHHHHHHhCccccCCcE
Confidence 458999999999888888888653 56666777777753 23 3458999999999999999999998643 47899
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
++++..........+++.|+++|+.||+...++...+..+..
T Consensus 228 i~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~ 269 (459)
T 1w25_A 228 LAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQ 269 (459)
T ss_dssp EEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHH
Confidence 999988888888899999999999999999988776665543
No 111
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=97.76 E-value=0.00034 Score=44.96 Aligned_cols=106 Identities=15% Similarity=0.090 Sum_probs=79.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEc
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSV 98 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~ 98 (184)
.|++|..|-.....+++++....|.+...... ......|+|+|+..+-..+-+ .-+.....-+|++-+
T Consensus 14 ~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~--------~~e~~AdlIfCEYlLLPe~if----S~k~~~~~dliVLfD 81 (121)
T 3q7r_A 14 HVLLVSEHWDLFFQTKELLNPEEYRCTIGQQY--------KQELSADLVVCEYSLLPREIR----SPKSLEGSFVLVLLD 81 (121)
T ss_dssp EEEEECSCHHHHHHHHHHSCTTTEEEEEESSC--------CCCTTEEEEEEEGGGSCTTCC----CCTTCCSCEEEEEES
T ss_pred EEEEEecCchhhHHHHHhcCCcceeEEecccc--------CCcccceeEEEeeecChHHhc----CCCCCCcccEEEEeh
Confidence 58899999999999999987777887766532 124457999999865433210 001112445788888
Q ss_pred cCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 99 DGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 99 ~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
.-+++...+.++.||. |+.+|++..-+..+++..+++.
T Consensus 82 ~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 82 FFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp SCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred hhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 8888999999999999 9999999999999999888753
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.42 E-value=0.00044 Score=52.26 Aligned_cols=97 Identities=13% Similarity=0.085 Sum_probs=69.1
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEE
Q 029986 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 15 ~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iI 94 (184)
..+.+|+|++|++..+..+...|...|+++..+.+ .....+|++++|..++...+. ..++
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~---------~~~~~~~~ii~d~~~~~~~~~-----------~~~i 68 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG---------QEPTPEDVLITDEVVSKKWQG-----------RAVV 68 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS---------CCCCTTCEEEEESSCSCCCCS-----------SEEE
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC---------CCCCcCcEEEEcCCCcccccc-----------ceEE
Confidence 35679999999999999999999999999987764 113568999999998875431 1244
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
.++.... +. ....+...++.+|....++...+..+..
T Consensus 69 ~~~~~~~-~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 69 TFCRRHI-GI---PLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp EECSSCC-CS---CCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred EEecccC-CC---cccccCCceeccccchHHHHHHHHHHhh
Confidence 4433211 10 0123445789999998899888887764
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.97 E-value=0.0013 Score=57.07 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEEEccCChHHH-H
Q 029986 29 WLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMMSVDGCTQDV-M 106 (184)
Q Consensus 29 ~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~~~~~~~~~~-~ 106 (184)
....|...|++.|++|..+.+.++++..+.. +...++|++|+.++ +.+++++++. ..++||.+++........ .
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~-~~~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~ 93 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIEN-NARLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSL 93 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHH-CTTEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGG
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh-CCCceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccch
Confidence 3445668888889999999999999999974 45589999999775 6789999964 469999999876432222 2
Q ss_pred HHHHcCCCceEeCCCCHH
Q 029986 107 KGVTHGACNYLLKPIRIK 124 (184)
Q Consensus 107 ~a~~~ga~~~l~kP~~~~ 124 (184)
+. -.++++|+.+.....
T Consensus 94 ~~-~~~~~~~~~~~~~~~ 110 (715)
T 3n75_A 94 ND-LRLQISFFEYALGAA 110 (715)
T ss_dssp TT-SCCEEEEECCCTTCH
T ss_pred hh-hhccCeEEEeCCCCH
Confidence 22 346788888766433
No 114
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=96.29 E-value=0.16 Score=35.54 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=76.5
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCCeEEEE---CCHHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHhcc
Q 029986 17 GLRVLVV----DDDPIWLRILEKMLRKCLYEVTKC---NRAEIALDMLRMSKNGYDIVISDVHMPDM--DGFKLHEQVGL 87 (184)
Q Consensus 17 ~~~Iliv----dd~~~~~~~l~~~L~~~~~~v~~~---~~~~~~~~~l~~~~~~~dlvilD~~l~~~--~g~~l~~~l~~ 87 (184)
..+|++. |.+..-...+..+|+..||+|... -..++..+.+. +..||+|.+-..+... .--++++.++.
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~--~~~~diV~lS~~~~~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAV--QEDVDVIGVSILNGAHLHLMKRLMAKLRE 95 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHH--HTTCSEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--hcCCCEEEEEeechhhHHHHHHHHHHHHh
Confidence 4478887 778888888999999999998743 35777787776 4569999998765531 12335555644
Q ss_pred c--CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 88 E--MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 88 ~--~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
. .+++|++ ...........+.+.|++.++..-.+..+....+..++.
T Consensus 96 ~g~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~ 144 (161)
T 2yxb_A 96 LGADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAE 144 (161)
T ss_dssp TTCTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHH
Confidence 3 2456554 444444444456789999767655555566666666554
No 115
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.27 E-value=0.039 Score=40.27 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=59.9
Q ss_pred CHHHHHHHHHhcCCCccEEEEeC-CCCCCCH--HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE------eC
Q 029986 49 RAEIALDMLRMSKNGYDIVISDV-HMPDMDG--FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL------LK 119 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~-~l~~~~g--~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l------~k 119 (184)
+..+....+... ..+++++.++ ..+.++| .+.+++++...+.|+|.++.....+...++++.|+++++ .+
T Consensus 131 ~~~~~i~~~~~~-~~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKR-GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHH-TCSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhc-CCCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 344555554422 2356888886 5555555 456777766668999999988889999999999999985 78
Q ss_pred CCCHHHHHHHHH
Q 029986 120 PIRIKELRNIWQ 131 (184)
Q Consensus 120 P~~~~~l~~~l~ 131 (184)
|++..++.+.+.
T Consensus 210 ~~~~~~~~~~l~ 221 (237)
T 3cwo_X 210 EIDVRELKEYLK 221 (237)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 989888877644
No 116
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=95.51 E-value=0.13 Score=38.90 Aligned_cols=97 Identities=15% Similarity=0.040 Sum_probs=65.3
Q ss_pred HHHHHHhcCCeEE--EECCHHHHHHHHHhcCCCccEEEEeCCCCCC-----CHHHHHHHhcccCCCCEEEEEccCChHHH
Q 029986 33 LEKMLRKCLYEVT--KCNRAEIALDMLRMSKNGYDIVISDVHMPDM-----DGFKLHEQVGLEMDLPVIMMSVDGCTQDV 105 (184)
Q Consensus 33 l~~~L~~~~~~v~--~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~-----~g~~l~~~l~~~~~~~iIi~~~~~~~~~~ 105 (184)
..+.|.+.|+.+. ...+...+..+.. .++++| +.+..|-+ ...++++.+....++|||.=..-.+++.+
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~~---~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDA 202 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLAE---IGCIAV-MPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDA 202 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHHH---SCCSEE-EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHH---hCCCEE-EeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHH
Confidence 4456667799877 4455655555543 457888 54443321 23678888877788999987777889999
Q ss_pred HHHHHcCCCceE-----eCCCCHHHHHHHHHHH
Q 029986 106 MKGVTHGACNYL-----LKPIRIKELRNIWQHV 133 (184)
Q Consensus 106 ~~a~~~ga~~~l-----~kP~~~~~l~~~l~~~ 133 (184)
..+++.|+++.+ .+--++..+...+...
T Consensus 203 a~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~A 235 (265)
T 1wv2_A 203 AIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHA 235 (265)
T ss_dssp HHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHH
Confidence 999999999987 4433445555444443
No 117
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=95.14 E-value=0.3 Score=36.22 Aligned_cols=97 Identities=13% Similarity=0.191 Sum_probs=65.8
Q ss_pred CeEEEEeC----CHHHHHHHHHHHHhcCCeE-EEECCHHHHHHHHHhcCCCccEEEEeCC------CCCCCHHHHHHHhc
Q 029986 18 LRVLVVDD----DPIWLRILEKMLRKCLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVH------MPDMDGFKLHEQVG 86 (184)
Q Consensus 18 ~~Ilivdd----~~~~~~~l~~~L~~~~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~------l~~~~g~~l~~~l~ 86 (184)
..+++++- ++.....+...+++.|..+ ..+++.+++..... .++|+|.+... .....++++++++.
T Consensus 102 ad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~---~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~ 178 (229)
T 3q58_A 102 ADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQ---KGIEFIGTTLSGYTGPITPVEPDLAMVTQLS 178 (229)
T ss_dssp CSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHH---TTCSEEECTTTTSSSSCCCSSCCHHHHHHHH
T ss_pred CCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHh---CCCCEEEecCccCCCCCcCCCCCHHHHHHHH
Confidence 34555543 3334444555556656654 46778888877654 56898865322 12345678888886
Q ss_pred ccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 87 LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 87 ~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.. ++|+|.-..-.+.+.+.+++..||++++.
T Consensus 179 ~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 179 HA-GCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp TT-TCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred Hc-CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 55 88999887777889999999999999975
No 118
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=94.69 E-value=0.083 Score=42.05 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=49.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC---LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~---~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~ 75 (184)
.++++|+|.|+.+.+.|..++.+. .+++..|++.+.+.+..+. ..+|++++|-.+..
T Consensus 21 ~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~--~~~dilli~e~~~~ 80 (373)
T 3fkq_A 21 KIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKE--YRIDVLIAEEDFNI 80 (373)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHH--HTCSEEEEETTCCC
T ss_pred eEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhc--CCCCEEEEcchhhh
Confidence 468999999999999999999754 6899999999999999874 46899999987654
No 119
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=94.39 E-value=0.57 Score=34.79 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCCeE-EEECCHHHHHHHHHhcCCCccEEEEeCC-C-----CCCCHHHHHHHhcccCCCCEEEEEcc
Q 029986 27 PIWLRILEKMLRKCLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVH-M-----PDMDGFKLHEQVGLEMDLPVIMMSVD 99 (184)
Q Consensus 27 ~~~~~~l~~~L~~~~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~-l-----~~~~g~~l~~~l~~~~~~~iIi~~~~ 99 (184)
+.....+...+.+.|..+ ..+.+.+++..... .++|+|.+... . ....+++++++++.. ++|+|.-..-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~---~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~-~ipvIA~GGI 190 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQR---LGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA-GCRVIAEGRY 190 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHH---TTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT-TCCEEEESCC
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHh---CCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc-CCcEEEECCC
Confidence 334444555556656654 46778888877654 56898865322 1 223467888888655 8899888777
Q ss_pred CChHHHHHHHHcCCCceEe
Q 029986 100 GCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 100 ~~~~~~~~a~~~ga~~~l~ 118 (184)
.+.+.+.++++.|+++++.
T Consensus 191 ~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 191 NSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp CSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 7789999999999999974
No 120
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=93.56 E-value=1.2 Score=33.65 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=67.1
Q ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCC
Q 029986 13 QFPAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDL 91 (184)
Q Consensus 13 ~~~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~ 91 (184)
-+.+.+.|.+.-.++...+.+...|....|.+..+.+.++.++.+.......|++++..- +.+...+..++.. ..-.
T Consensus 5 ~~~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g~lL 82 (289)
T 1r8j_A 5 IVLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEGVVV 82 (289)
T ss_dssp -CCCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTTCCC
T ss_pred ccccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcCccc
Confidence 345678899999999999999999988889999999999999999766677999999761 2345567777753 3467
Q ss_pred CEEEEEcc
Q 029986 92 PVIMMSVD 99 (184)
Q Consensus 92 ~iIi~~~~ 99 (184)
|+|++...
T Consensus 83 P~vil~~~ 90 (289)
T 1r8j_A 83 PAIVVGDR 90 (289)
T ss_dssp CEEEESCC
T ss_pred cEEEeccC
Confidence 99988553
No 121
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=93.18 E-value=1.3 Score=29.90 Aligned_cols=106 Identities=7% Similarity=-0.048 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHhcCCeEE---EECCHHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHhccc-C-CCCEEEEE
Q 029986 25 DDPIWLRILEKMLRKCLYEVT---KCNRAEIALDMLRMSKNGYDIVISDVHMPDMD--GFKLHEQVGLE-M-DLPVIMMS 97 (184)
Q Consensus 25 d~~~~~~~l~~~L~~~~~~v~---~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~--g~~l~~~l~~~-~-~~~iIi~~ 97 (184)
-+..-...+..+|+..||+|. ..-..++..+.+. +..||+|.+...+.... .-++++.++.. . +++|+ +.
T Consensus 15 ~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~--~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~-vG 91 (137)
T 1ccw_A 15 CHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAI--ETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLY-VG 91 (137)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHH--HHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEE-EE
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--hcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEE-EE
Confidence 455566678888999999877 4556888888877 34599999988764321 12345555432 2 45554 44
Q ss_pred ccC---ChH---HHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 98 VDG---CTQ---DVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 98 ~~~---~~~---~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
... ..+ ....+.+.|++.|+..--+..++...+...
T Consensus 92 G~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 92 GNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp ESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred CCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 432 111 134578899999887666777776665544
No 122
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=91.67 E-value=0.73 Score=34.87 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=53.2
Q ss_pred CCCccEEEEeCCCCC--CC--------------------HHHHHHHhccc-CCCCEEEEEcc------CChHHHHHHHHc
Q 029986 61 KNGYDIVISDVHMPD--MD--------------------GFKLHEQVGLE-MDLPVIMMSVD------GCTQDVMKGVTH 111 (184)
Q Consensus 61 ~~~~dlvilD~~l~~--~~--------------------g~~l~~~l~~~-~~~~iIi~~~~------~~~~~~~~a~~~ 111 (184)
+.+.|+|-+++-..+ .| ++++++.++.. .++|+++++.. ....++..+.++
T Consensus 42 ~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~a 121 (268)
T 1qop_A 42 DAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQV 121 (268)
T ss_dssp HTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHH
T ss_pred HCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHc
Confidence 355888888874432 12 45667788766 68898887522 114677789999
Q ss_pred CCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 112 GACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 112 ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
|+++++...+..+++...+..+.+.
T Consensus 122 Gadgii~~d~~~e~~~~~~~~~~~~ 146 (268)
T 1qop_A 122 GVDSVLVADVPVEESAPFRQAALRH 146 (268)
T ss_dssp TCCEEEETTCCGGGCHHHHHHHHHT
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHc
Confidence 9999999888877777777766554
No 123
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=91.55 E-value=0.95 Score=34.15 Aligned_cols=88 Identities=19% Similarity=0.274 Sum_probs=57.8
Q ss_pred CHHHHHHHHHh-cCCCccEEEEeCCCCC--C--------------------CHHHHHHHhcccC-CCCEEEEEccC----
Q 029986 49 RAEIALDMLRM-SKNGYDIVISDVHMPD--M--------------------DGFKLHEQVGLEM-DLPVIMMSVDG---- 100 (184)
Q Consensus 49 ~~~~~~~~l~~-~~~~~dlvilD~~l~~--~--------------------~g~~l~~~l~~~~-~~~iIi~~~~~---- 100 (184)
+.+..++.++. .+.+.|+|-+++-..+ . +.+++++.++... ++|+++++...
T Consensus 29 ~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~ 108 (262)
T 2ekc_A 29 DYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFR 108 (262)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHH
Confidence 44444444432 2456898888775433 1 2345677776554 89998874221
Q ss_pred --ChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 101 --CTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 101 --~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
.......+.++|+++++.-.+..+++...+..+.+.
T Consensus 109 ~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~ 146 (262)
T 2ekc_A 109 IGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKY 146 (262)
T ss_dssp HCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHc
Confidence 135567789999999999888888887777776554
No 124
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=91.19 E-value=0.46 Score=36.04 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=61.4
Q ss_pred HHHHHhcCCeEE--EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCH-----HHHHHHhcc-cCC-CCEEEEEccCChHH
Q 029986 34 EKMLRKCLYEVT--KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG-----FKLHEQVGL-EMD-LPVIMMSVDGCTQD 104 (184)
Q Consensus 34 ~~~L~~~~~~v~--~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g-----~~l~~~l~~-~~~-~~iIi~~~~~~~~~ 104 (184)
.+.|.+.||.+. ...+...+..+.. .++++| +.+.-|-++| .++++.+.. ..+ +|||+=..-.+++.
T Consensus 117 a~~L~k~Gf~Vlpy~~~D~~~ak~l~~---~G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsD 192 (268)
T 2htm_A 117 AERLIEEDFLVLPYMGPDLVLAKRLAA---LGTATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSH 192 (268)
T ss_dssp HHHHHHTTCEECCEECSCHHHHHHHHH---HTCSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHH
T ss_pred HHHHHHCCCEEeeccCCCHHHHHHHHh---cCCCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHH
Confidence 345556688866 3456655554433 347777 6654432222 456777765 567 99998777788899
Q ss_pred HHHHHHcCCCceE-----eCCCCHHHHHHHHHHH
Q 029986 105 VMKGVTHGACNYL-----LKPIRIKELRNIWQHV 133 (184)
Q Consensus 105 ~~~a~~~ga~~~l-----~kP~~~~~l~~~l~~~ 133 (184)
+..+++.|+++.+ .|--++..+.+.+..+
T Consensus 193 Aa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~A 226 (268)
T 2htm_A 193 AAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLA 226 (268)
T ss_dssp HHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHH
Confidence 9999999999986 4533445554444443
No 125
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=90.80 E-value=2 Score=27.06 Aligned_cols=113 Identities=12% Similarity=0.195 Sum_probs=62.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHH----HHHHHhcccCCCCE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGF----KLHEQVGLEMDLPV 93 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~----~l~~~l~~~~~~~i 93 (184)
+-|++..-+......++.+++..|+.+..+.+.++.-+.+..--..+..-|+-....+..+. .+.+.+.. .+ +
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekairfvkslga--qv-l 79 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGA--QV-L 79 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCC--CC-E
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCC--eE-E
Confidence 33555667777888899999999999999999988877765322234333332233344432 34444432 23 3
Q ss_pred EEEEccCCh---HHHHHHHHcCCCceEeCC-CCHHHHHHHHHHHHcC
Q 029986 94 IMMSVDGCT---QDVMKGVTHGACNYLLKP-IRIKELRNIWQHVAQQ 136 (184)
Q Consensus 94 Ii~~~~~~~---~~~~~a~~~ga~~~l~kP-~~~~~l~~~l~~~~~~ 136 (184)
|++..+..- +.......-|.. ++. -+++.+...+.++.+.
T Consensus 80 iiiydqdqnrleefsrevrrrgfe---vrtvtspddfkkslerlire 123 (134)
T 2l69_A 80 IIIYDQDQNRLEEFSREVRRRGFE---VRTVTSPDDFKKSLERLIRE 123 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCC---EEEESSHHHHHHHHHHHHHH
T ss_pred EEEEeCchhHHHHHHHHHHhcCce---EEEecChHHHHHHHHHHHHH
Confidence 333333221 222333444432 222 2456777777776654
No 126
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=90.35 E-value=3.9 Score=30.48 Aligned_cols=85 Identities=11% Similarity=0.027 Sum_probs=57.8
Q ss_pred EEECCHHHHHHHHHhcCCCccEEEEeCCCCC-------CCHHHHHHHhccc--CCCCEEEEEccCChHHHHHHHHcCCCc
Q 029986 45 TKCNRAEIALDMLRMSKNGYDIVISDVHMPD-------MDGFKLHEQVGLE--MDLPVIMMSVDGCTQDVMKGVTHGACN 115 (184)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-------~~g~~l~~~l~~~--~~~~iIi~~~~~~~~~~~~a~~~ga~~ 115 (184)
.++.+.+++..... .++|.|.+.-..+. .-|++.++++... .++|++.+..- +.+.+..++.+|+++
T Consensus 140 ~S~ht~~Ea~~A~~---~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~g 215 (243)
T 3o63_A 140 RSTHDPDQVAAAAA---GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARR 215 (243)
T ss_dssp EEECSHHHHHHHHH---SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCC
T ss_pred EeCCCHHHHHHHhh---CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCE
Confidence 36788888777654 45899999664443 2367788888544 47899998665 677888999999999
Q ss_pred eEe-----CCCCHHHHHHHHHHH
Q 029986 116 YLL-----KPIRIKELRNIWQHV 133 (184)
Q Consensus 116 ~l~-----kP~~~~~l~~~l~~~ 133 (184)
+.. +.-++.+-.+.+...
T Consensus 216 vav~sai~~a~dp~~a~~~l~~~ 238 (243)
T 3o63_A 216 IVVVRAITSADDPRAAAEQLRSA 238 (243)
T ss_dssp EEESHHHHTCSSHHHHHHHHHHH
T ss_pred EEEeHHHhCCCCHHHHHHHHHHH
Confidence 864 444444444444433
No 127
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=89.88 E-value=2.3 Score=31.06 Aligned_cols=97 Identities=14% Similarity=0.059 Sum_probs=63.9
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCCeEEEEC---CHHHHHHHHHhcCCCccEEEE--eCCCCC-CC-HHHHHHHh
Q 029986 17 GLRVLVV----DDDPIWLRILEKMLRKCLYEVTKCN---RAEIALDMLRMSKNGYDIVIS--DVHMPD-MD-GFKLHEQV 85 (184)
Q Consensus 17 ~~~Iliv----dd~~~~~~~l~~~L~~~~~~v~~~~---~~~~~~~~l~~~~~~~dlvil--D~~l~~-~~-g~~l~~~l 85 (184)
.-+|++. |-+..=...+..+|+..||+|.... ..++..+.+. +..||+|.+ ...+.. .. --++++.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~--~~~~d~v~l~~S~l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAA--KHKGEKVLLVGSALMTTSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHH--HTTTSCEEEEEECSSHHHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHH--HcCCCEEEEEchhcccCcHHHHHHHHHHH
Confidence 4477777 6677788888999999999987543 4677777776 456999999 876653 12 23456666
Q ss_pred ccc-C--CCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 86 GLE-M--DLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 86 ~~~-~--~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+.. . ++||++=...-+.+. +-+.||+.|-.
T Consensus 170 ~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~ 202 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAE 202 (215)
T ss_dssp HHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCS
T ss_pred HHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEEC
Confidence 543 2 566655444444433 34569987754
No 128
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=89.15 E-value=5.7 Score=29.74 Aligned_cols=111 Identities=14% Similarity=0.033 Sum_probs=70.4
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCCeEEEE---CCHHHHHHHHHhcCCCccEEEEeCCCCCC-C-HHHHHHHhcc
Q 029986 17 GLRVLVV----DDDPIWLRILEKMLRKCLYEVTKC---NRAEIALDMLRMSKNGYDIVISDVHMPDM-D-GFKLHEQVGL 87 (184)
Q Consensus 17 ~~~Iliv----dd~~~~~~~l~~~L~~~~~~v~~~---~~~~~~~~~l~~~~~~~dlvilD~~l~~~-~-g~~l~~~l~~ 87 (184)
.-+|++. |-+..-...+..+|+..||+|... -..++..+.+. ...||+|.+...++.. . --++++.++.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~--~~~~d~V~lS~l~~~~~~~~~~~i~~l~~ 200 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQ--KEKPIMLTGTALMTTTMYAFKEVNDMLLE 200 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHH--HHCCSEEEEECCCTTTTTHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEEeeccCCHHHHHHHHHHHHh
Confidence 4477777 566777888889999999987532 35666767766 3459999998876642 2 3346667754
Q ss_pred c-CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 88 E-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 88 ~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
. +.+||++=....+.+. +-..|++.|.... .+....+..+..
T Consensus 201 ~~~~~~v~vGG~~~~~~~---~~~igad~~~~da---~~av~~~~~l~~ 243 (258)
T 2i2x_B 201 NGIKIPFACGGGAVNQDF---VSQFALGVYGEEA---ADAPKIADAIIA 243 (258)
T ss_dssp TTCCCCEEEESTTCCHHH---HHTSTTEEECSST---THHHHHHHHHHT
T ss_pred cCCCCcEEEECccCCHHH---HHHcCCeEEECCH---HHHHHHHHHHHc
Confidence 3 4566665443333333 2377887665533 445555555554
No 129
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=88.94 E-value=3.4 Score=29.76 Aligned_cols=97 Identities=14% Similarity=0.015 Sum_probs=62.7
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCCeEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHhcc
Q 029986 17 GLRVLVV----DDDPIWLRILEKMLRKCLYEVTKCN---RAEIALDMLRMSKNGYDIVISDVHMPDMD--GFKLHEQVGL 87 (184)
Q Consensus 17 ~~~Iliv----dd~~~~~~~l~~~L~~~~~~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~~--g~~l~~~l~~ 87 (184)
.-+|++. |-+..-...+..+|+..||++.... ..++..+.+. ...||+|.+...++..- --++++.++.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~--~~~~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVK--KYQPDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHH--HHCCSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEeccccccHHHHHHHHHHHHh
Confidence 3468777 6677788889999999999988544 4566677665 34599999988765421 2345556653
Q ss_pred c---CCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 88 E---MDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 88 ~---~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
. +++||++=....+.+.. ...|++.|..
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~ 196 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFA---DEIGADGYAP 196 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHH---HHHTCSEECS
T ss_pred cCCCCCCeEEEECCCCCHHHH---HHcCCeEEEC
Confidence 2 24666655444333332 4568886654
No 130
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=87.86 E-value=4.4 Score=29.30 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=48.3
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEeCCCCC-------CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 46 KCNRAEIALDMLRMSKNGYDIVISDVHMPD-------MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-------~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
.+.+.+++..... .+.|.|+++...+. ..+++.++.++...++|++....- +.+.+..+++.|++++.
T Consensus 116 sv~t~~~~~~a~~---~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~Ga~gv~ 190 (221)
T 1yad_A 116 SVHSLEEAVQAEK---EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAGADGIA 190 (221)
T ss_dssp EECSHHHHHHHHH---TTCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTTCSEEE
T ss_pred EcCCHHHHHHHHh---CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 5677777766654 45899999764432 235777887754457898887655 78888999999999875
No 131
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=87.69 E-value=2.1 Score=31.42 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHH
Q 029986 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132 (184)
Q Consensus 72 ~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~ 132 (184)
.+...++.+.++.+++..+-.+|-..+-.+.+.+..+.++||+ |+..|....++.+..+.
T Consensus 45 t~~t~~a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~-fivsP~~~~evi~~~~~ 104 (217)
T 3lab_A 45 TLRTEAGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQ-FIVSPGLTPELIEKAKQ 104 (217)
T ss_dssp ETTSTTHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCS-EEEESSCCHHHHHHHHH
T ss_pred eCCCccHHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCC-EEEeCCCcHHHHHHHHH
Confidence 3334567777777754432355555556677888888888887 77777776666655444
No 132
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=86.97 E-value=0.82 Score=34.74 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=42.9
Q ss_pred HHHHHHhccc-CCCCEEEEEccC------ChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 79 FKLHEQVGLE-MDLPVIMMSVDG------CTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 79 ~~l~~~l~~~-~~~~iIi~~~~~------~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+++++.++.. .++|+++++-.. ...+..++.++|+++.+...+..++.......+.+.
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~ 147 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAH 147 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHc
Confidence 6677777755 688998885322 245788899999999999888888777766666553
No 133
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=85.74 E-value=9.8 Score=28.79 Aligned_cols=87 Identities=13% Similarity=-0.029 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCCeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCCC--CCHHHHHHHhccc-C-CCCEEEEEccCChH
Q 029986 29 WLRILEKMLRKCLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPD--MDGFKLHEQVGLE-M-DLPVIMMSVDGCTQ 103 (184)
Q Consensus 29 ~~~~l~~~L~~~~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~--~~g~~l~~~l~~~-~-~~~iIi~~~~~~~~ 103 (184)
....+.......|..+ ..+++.+++..... .++|+|-+.-.-.. .-+++.+.++... + ++|+|..+.-.+.+
T Consensus 150 ~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~---~Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVaegGI~t~e 226 (272)
T 3qja_A 150 VLVSMLDRTESLGMTALVEVHTEQEADRALK---AGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTA 226 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---HTCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCSHH
T ss_pred HHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH---CCCCEEEECCCcccccccCHHHHHHHHHhCcccCEEEEECCCCCHH
Confidence 3444455556667754 46788888766654 35888888632111 1134556666433 3 67888877777789
Q ss_pred HHHHHHHcCCCceEe
Q 029986 104 DVMKGVTHGACNYLL 118 (184)
Q Consensus 104 ~~~~a~~~ga~~~l~ 118 (184)
.+..+.+.|++++++
T Consensus 227 dv~~l~~~GadgvlV 241 (272)
T 3qja_A 227 DLLAYAGAGADAVLV 241 (272)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999985
No 134
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=85.70 E-value=1.2 Score=33.95 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=42.3
Q ss_pred HHHHHHHhccc-CCCCEEEEEc------cCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 78 GFKLHEQVGLE-MDLPVIMMSV------DGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 78 g~~l~~~l~~~-~~~~iIi~~~------~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
.+++++.++.. .++|+++++- +.......++.++|+++.+.-.+..++.......+.+
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~ 148 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEK 148 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 35677777755 6899998862 2234568889999999999887877776666665544
No 135
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=85.34 E-value=4.5 Score=31.40 Aligned_cols=108 Identities=10% Similarity=0.052 Sum_probs=68.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEE--ECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTK--CNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~--~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iI 94 (184)
..++.|+.+.+. ..+...+++..-.+.. .-+..+..+++.. .|++++-....++-|..+++.+. ..+|+|
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a--~G~PvI 311 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMA--AGTAVV 311 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHH--HTCEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHH--cCCCEE
Confidence 567777777665 5555555443112222 2234455666552 58888764324444666777664 356776
Q ss_pred EEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
... .....+.+..|..+++..|-+.+++.+.+..++..
T Consensus 312 ~~~----~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 312 ASD----LDAFRRVLADGDAGRLVPVDDADGMAAALIGILED 349 (406)
T ss_dssp ECC----CHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC
T ss_pred Eec----CCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 532 24556777888899999999999999999988763
No 136
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=84.28 E-value=1.6 Score=33.18 Aligned_cols=86 Identities=15% Similarity=0.092 Sum_probs=55.3
Q ss_pred CHHHHHHHHHh-cCCCccEEEEeCCCCCC----------------------CHHHHHHHhcccCCCCEEEEEcc------
Q 029986 49 RAEIALDMLRM-SKNGYDIVISDVHMPDM----------------------DGFKLHEQVGLEMDLPVIMMSVD------ 99 (184)
Q Consensus 49 ~~~~~~~~l~~-~~~~~dlvilD~~l~~~----------------------~g~~l~~~l~~~~~~~iIi~~~~------ 99 (184)
+.+...+.++. .+. .|+|.+++-..+- +.+++++.++...++|+++++-.
T Consensus 28 ~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~ 106 (271)
T 1ujp_A 28 SREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAW 106 (271)
T ss_dssp CHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHH
T ss_pred ChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHh
Confidence 44444444432 244 8998888754321 13566777776678999997421
Q ss_pred CChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 100 GCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 100 ~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
.....+..+.++|+++++.-.+..+++......+.+
T Consensus 107 g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~ 142 (271)
T 1ujp_A 107 GPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQE 142 (271)
T ss_dssp CHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHH
Confidence 224556778999999999887777766666655543
No 137
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=84.13 E-value=13 Score=32.50 Aligned_cols=116 Identities=11% Similarity=-0.081 Sum_probs=71.6
Q ss_pred CCeEEEEe----CCHHHHHHHHHHHHhcCCeEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHhcc
Q 029986 17 GLRVLVVD----DDPIWLRILEKMLRKCLYEVTKCN---RAEIALDMLRMSKNGYDIVISDVHMPDM--DGFKLHEQVGL 87 (184)
Q Consensus 17 ~~~Ilivd----d~~~~~~~l~~~L~~~~~~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~--~g~~l~~~l~~ 87 (184)
..+|++.. .+..-...+..+|...||+|.... ..++..+... +..+|+|.+-..+..- ..-++++.|+.
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~--e~~adiVglSsl~~~~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAV--DADVHAVGVSTLAAGHKTLVPELIKELNS 681 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH--HTTCSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHH--HcCCCEEEEeeecHHHHHHHHHHHHHHHh
Confidence 34677653 555666778888999999997543 4677777776 4568999987665431 23445666653
Q ss_pred c-CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 88 E-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 88 ~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
. ..-..|++....-......+.+.|+++|+..--+..+....+...+
T Consensus 682 ~G~~dv~VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l 729 (762)
T 2xij_A 682 LGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDI 729 (762)
T ss_dssp TTCTTSEEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHH
Confidence 3 2122344443122223445678999999986656666655555544
No 138
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=83.50 E-value=5.3 Score=29.35 Aligned_cols=56 Identities=9% Similarity=0.147 Sum_probs=38.4
Q ss_pred HHHHHHHhcccCCCCEEEEEccCC------hHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 78 GFKLHEQVGLEMDLPVIMMSVDGC------TQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 78 g~~l~~~l~~~~~~~iIi~~~~~~------~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
+.++++.+++..+.||.+++.... ...+..++++|++..+......++....++.+
T Consensus 68 ~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~ 129 (248)
T 1geq_A 68 AFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIA 129 (248)
T ss_dssp HHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHH
Confidence 467788887655788887763222 46778899999999988766655554444443
No 139
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=83.34 E-value=2.5 Score=31.54 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=45.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCC
Q 029986 61 KNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121 (184)
Q Consensus 61 ~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~ 121 (184)
.+.||++|+=.-.+..-|-.-.+.+-+..++|.|++++..... ..++++..-.+|+.-+.
T Consensus 62 ~~~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~ 121 (283)
T 1qv9_A 62 DFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLK-VKDEMEEQGLGYILVKP 121 (283)
T ss_dssp HHCCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGG-GHHHHHHTTCEEEEETT
T ss_pred hcCCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchh-hHHHHHhcCCcEEEEec
Confidence 5679999997766777787777776555789999998765544 66888888888886554
No 140
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=83.27 E-value=15 Score=31.99 Aligned_cols=116 Identities=12% Similarity=-0.048 Sum_probs=72.2
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCCeEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHhcc
Q 029986 17 GLRVLVV----DDDPIWLRILEKMLRKCLYEVTKCN---RAEIALDMLRMSKNGYDIVISDVHMPDM--DGFKLHEQVGL 87 (184)
Q Consensus 17 ~~~Iliv----dd~~~~~~~l~~~L~~~~~~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~--~g~~l~~~l~~ 87 (184)
..+|++. |.+..-...+..+|+..||+|.... ..++..+... +..+|+|.+-..+..- ..-++++.|+.
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~--e~~adiVglSsl~~~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAV--EADVHVVGVSSLAGGHLTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHH--HTTCSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH--HcCCCEEEEeeecHhHHHHHHHHHHHHHh
Confidence 3467766 4566667778888999999997543 4677777776 4569999997765431 23445666654
Q ss_pred c-CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 88 E-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 88 ~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
. ..-..|++....-......+.+.|+++|+..-.+..++...+...+
T Consensus 674 ~G~~~i~VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l 721 (727)
T 1req_A 674 LGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKL 721 (727)
T ss_dssp TTCTTSEEEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHH
Confidence 3 2123444443222333445688999999986666666655554443
No 141
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=81.84 E-value=8.5 Score=27.35 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=47.0
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEeCCCCC-------CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 46 KCNRAEIALDMLRMSKNGYDIVISDVHMPD-------MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-------~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
.+.+..++..... .++|.++++...+. ..+++.++.++...++|+++...-. .+.+..+++.|++++.
T Consensus 114 ~~~t~~e~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 188 (215)
T 1xi3_A 114 SVYSLEEALEAEK---KGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIA 188 (215)
T ss_dssp EESSHHHHHHHHH---HTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEE
T ss_pred ecCCHHHHHHHHh---cCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEE
Confidence 4567777655433 34899998764443 3477888887654578887765443 7777788899999885
No 142
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=81.47 E-value=2.3 Score=31.78 Aligned_cols=57 Identities=14% Similarity=0.261 Sum_probs=37.9
Q ss_pred HHHHHHHhcccCCCCEEEEEccCChH---HHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 78 GFKLHEQVGLEMDLPVIMMSVDGCTQ---DVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 78 g~~l~~~l~~~~~~~iIi~~~~~~~~---~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
++++++.++...++|++++. +.+.. ....+.++|+++++......+++.+.+..+.+
T Consensus 82 ~~~~i~~ir~~~~~Pv~~m~-~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~~ 141 (262)
T 1rd5_A 82 VLEMLREVTPELSCPVVLLS-YYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKN 141 (262)
T ss_dssp HHHHHHHHGGGCSSCEEEEC-CSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEe-cCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHH
Confidence 56778888766788988764 22221 12348899999999876666666666665543
No 143
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=81.42 E-value=6.7 Score=29.02 Aligned_cols=97 Identities=11% Similarity=0.055 Sum_probs=61.8
Q ss_pred HHHHHHhcCC-eEEEECCHHHHHHHHHh-cCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHH
Q 029986 33 LEKMLRKCLY-EVTKCNRAEIALDMLRM-SKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVT 110 (184)
Q Consensus 33 l~~~L~~~~~-~v~~~~~~~~~~~~l~~-~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~ 110 (184)
+.+.|.+.+. -|....+.+++..+.+. ...+..++=+ .+...++.+.++.+++...-.++-..+-.+.+.+..+.+
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEv--t~~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~ 104 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEI--TFRSDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKE 104 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEE--ETTSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEE--eCCCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHH
Confidence 3445555453 45555666666666542 2445665544 445667889999886543234555555566888999999
Q ss_pred cCCCceEeCCCCHHHHHHHHHH
Q 029986 111 HGACNYLLKPIRIKELRNIWQH 132 (184)
Q Consensus 111 ~ga~~~l~kP~~~~~l~~~l~~ 132 (184)
+||+ |+..|....++.+..+.
T Consensus 105 AGA~-fIvsP~~~~~vi~~~~~ 125 (232)
T 4e38_A 105 AGAT-FVVSPGFNPNTVRACQE 125 (232)
T ss_dssp HTCS-EEECSSCCHHHHHHHHH
T ss_pred cCCC-EEEeCCCCHHHHHHHHH
Confidence 9998 77778776777666554
No 144
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=80.61 E-value=16 Score=27.39 Aligned_cols=81 Identities=12% Similarity=0.145 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc--cCCCCEEEEEccCChHHHHHHHHcCCCceEe-CCCCHHHHH
Q 029986 51 EIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL--EMDLPVIMMSVDGCTQDVMKGVTHGACNYLL-KPIRIKELR 127 (184)
Q Consensus 51 ~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~--~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~-kP~~~~~l~ 127 (184)
....+.+. ..++|.|++|++-.-.+.-++...++. ....++++=....+...+..+++.|+++.++ |--+.+++.
T Consensus 27 p~~~e~a~--~~g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~~ld~G~~gI~lP~v~saed~~ 104 (261)
T 3qz6_A 27 PDIVRIYA--EAGLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQRLLDIGAEGFMIPGVQSAETMR 104 (261)
T ss_dssp TTHHHHHH--HTTCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHHHHTCCEEEETTCCSHHHHH
T ss_pred HHHHHHHh--cCCcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHhcCCCEEEECCcCCHHHHH
Confidence 44444444 356999999998877776666555532 1234444434445567888999999998765 334677887
Q ss_pred HHHHHH
Q 029986 128 NIWQHV 133 (184)
Q Consensus 128 ~~l~~~ 133 (184)
.....+
T Consensus 105 ~~~~~~ 110 (261)
T 3qz6_A 105 ETVRLA 110 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777665
No 145
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=79.80 E-value=19 Score=27.93 Aligned_cols=107 Identities=15% Similarity=0.102 Sum_probs=70.7
Q ss_pred CCCeEEEEeCCH-HHHHHHHHHHHhcCCeEEE-EC--CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCC
Q 029986 16 AGLRVLVVDDDP-IWLRILEKMLRKCLYEVTK-CN--RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDL 91 (184)
Q Consensus 16 ~~~~Ilivdd~~-~~~~~l~~~L~~~~~~v~~-~~--~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~ 91 (184)
++.+++|+.+.+ .....+....+..+ .+.. .. +.++..+++. . .|++++-... ++-|..+++.+. ..+
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~--~--adv~v~ps~~-e~~~~~~~EAma--~G~ 355 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG--S--VDFVIIPSYF-EPFGLVALEAMC--LGA 355 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT--T--CSEEEECBSC-CSSCHHHHHHHH--TTC
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHH--H--CCEEEeCCCC-CCccHHHHHHHH--CCC
Confidence 356777777654 34466777777766 4433 33 4555666654 2 6888886553 445666777663 457
Q ss_pred CEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 92 PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
|||.. . .....+.+..| .+++..|.+.+++.+.+..++.
T Consensus 356 Pvi~s-~---~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 356 IPIAS-A---VGGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEEEE-S---STHHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred CeEEc-C---CCCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 87753 2 23344555567 8999999999999999999887
No 146
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=79.49 E-value=17 Score=31.25 Aligned_cols=113 Identities=14% Similarity=0.116 Sum_probs=69.2
Q ss_pred CCeEEEE----eCCHHHHHHH----HHHHHhcCCeEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCCCCC----H-HH
Q 029986 17 GLRVLVV----DDDPIWLRIL----EKMLRKCLYEVTKCN---RAEIALDMLRMSKNGYDIVISDVHMPDMD----G-FK 80 (184)
Q Consensus 17 ~~~Iliv----dd~~~~~~~l----~~~L~~~~~~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~~----g-~~ 80 (184)
..+|++. |-+..=...+ ..+|+..||+|.... ..++.++.+. +..||+|.+...+...+ . -+
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~--EedADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAI--ELKADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHH--HTTCSEEEEECCCCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEeccccCchhhHHHHHH
Confidence 3477777 4455444333 467888899987543 5788888876 45699999998887632 2 23
Q ss_pred HHHHhccc-C--CCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 81 LHEQVGLE-M--DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 81 l~~~l~~~-~--~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
+++.++.. . .++|+ +....-... -+.+.|++.|+.......++...+...+
T Consensus 680 vIelLrE~GlrDkIkVI-VGGa~~tqd--~AkeIGADa~f~DATeAVeVA~~Ll~~l 733 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIG-CGGTQVTPE--VAVKQGVDAGFGRGSKGIHVATFLVKKR 733 (763)
T ss_dssp HHHHHHHTTCTTTSEEE-EECTTCCHH--HHHTTTCSEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEE-EECCCCCHH--HHHHcCCcEEECCcchHHHHHHHHHHHH
Confidence 55555433 2 23443 443322222 2458899999887776666655554444
No 147
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=79.49 E-value=13 Score=25.64 Aligned_cols=107 Identities=14% Similarity=0.093 Sum_probs=69.9
Q ss_pred CCCeEEEEeCCH-HHHHHHHHHHHhcCCeEEE-EC--CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCC
Q 029986 16 AGLRVLVVDDDP-IWLRILEKMLRKCLYEVTK-CN--RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDL 91 (184)
Q Consensus 16 ~~~~Ilivdd~~-~~~~~l~~~L~~~~~~v~~-~~--~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~ 91 (184)
+.++++++.+.+ .....+...++..+ .+.. .. +.++..+++. . .|++++-... +.-|..+++.+. ..+
T Consensus 69 ~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~--~--ad~~l~ps~~-e~~~~~~~Ea~a--~G~ 140 (200)
T 2bfw_A 69 QEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG--S--VDFVIIPSYF-EPFGLVALEAMC--LGA 140 (200)
T ss_dssp GGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT--T--CSEEEECCSC-CSSCHHHHHHHH--TTC
T ss_pred CCeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH--H--CCEEEECCCC-CCccHHHHHHHH--CCC
Confidence 356777877644 35566777777766 4444 32 4446666654 2 6888885543 344666777663 457
Q ss_pred CEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 92 PVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
|+|.. . .....+.+ .|..+++..|-+.+++.+.+..++.
T Consensus 141 PvI~~-~---~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 141 IPIAS-A---VGGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEEEE-S---CHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred CEEEe-C---CCChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 77654 2 23344455 6788999999999999999998876
No 148
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=78.46 E-value=1.3 Score=33.55 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=35.4
Q ss_pred CeEEEEeCC--HHHHHHHHHHHHhcCCeEEEECCHHH--HHHHHHhcCCCccEEEEeC
Q 029986 18 LRVLVVDDD--PIWLRILEKMLRKCLYEVTKCNRAEI--ALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 18 ~~Ilivdd~--~~~~~~l~~~L~~~~~~v~~~~~~~~--~~~~l~~~~~~~dlvilD~ 71 (184)
.+||||+++ +.-...+...|+..|++|......+- ..+.+. .+|+||++-
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~d 58 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILSD 58 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEES
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEcC
Confidence 479999988 66788899999999998887654321 112333 389999873
No 149
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=78.42 E-value=2.1 Score=32.74 Aligned_cols=93 Identities=18% Similarity=0.262 Sum_probs=58.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCC-CCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMD-LPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~-~~iIi 95 (184)
.|+|.|+-......+.+...|++.|+++......... + ..+|+||+ -++|| .+++..+.... +||+-
T Consensus 29 ~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~---~----~~~DlvIv----lGGDG-T~L~aa~~~~~~~PilG 96 (278)
T 1z0s_A 29 GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEE---L----ENFDFIVS----VGGDG-TILRILQKLKRCPPIFG 96 (278)
T ss_dssp -CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGG---G----GGSSEEEE----EECHH-HHHHHHTTCSSCCCEEE
T ss_pred ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEccccccc---c----CCCCEEEE----ECCCH-HHHHHHHHhCCCCcEEE
Confidence 4788888643322777888999989988765432111 1 23788887 26777 34444433222 88887
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
+.. |-.+|+. ++..+++..++..++.
T Consensus 97 IN~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 97 INT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EEC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred ECC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 742 5667776 4666777777887776
No 150
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=77.98 E-value=18 Score=26.46 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCCccEEEE-eCCCCC-CC--HHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe------C
Q 029986 50 AEIALDMLRMSKNGYDIVIS-DVHMPD-MD--GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL------K 119 (184)
Q Consensus 50 ~~~~~~~l~~~~~~~dlvil-D~~l~~-~~--g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~------k 119 (184)
..+..+.+. +..++.+++ +..-.+ .. .++++++++...++|+|.-..-.+.+.+.++++.|+++++. .
T Consensus 153 ~~e~~~~~~--~~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~ 230 (253)
T 1thf_D 153 LRDWVVEVE--KRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp HHHHHHHHH--HTTCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHH--HCCCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcC
Confidence 344444443 244675554 443211 12 37888888766688999887777778888999999998863 3
Q ss_pred CCCHHHHHHHHH
Q 029986 120 PIRIKELRNIWQ 131 (184)
Q Consensus 120 P~~~~~l~~~l~ 131 (184)
|.+..+..+.++
T Consensus 231 ~~~~~~~~~~l~ 242 (253)
T 1thf_D 231 EIDVRELKEYLK 242 (253)
T ss_dssp CSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 556666655543
No 151
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=77.07 E-value=10 Score=29.63 Aligned_cols=111 Identities=18% Similarity=0.151 Sum_probs=61.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCe----------EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhc
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYE----------VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG 86 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~----------v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~ 86 (184)
+.+++|+.+.+...+.+.+.+.+.|.. +.......+...++. ..|++++-....+.-|..+++-+
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~----~aDv~vl~ss~~e~gg~~~lEAm- 299 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYP----VGKIAIVGGTFVNIGGHNLLEPT- 299 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGG----GEEEEEECSSSSSSCCCCCHHHH-
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHH----hCCEEEECCcccCCCCcCHHHHH-
Confidence 567888887776555667777666543 222222234444443 15887774333222233345544
Q ss_pred ccCCCCEEEEEccCChHHHHH-HHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 87 LEMDLPVIMMSVDGCTQDVMK-GVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 87 ~~~~~~iIi~~~~~~~~~~~~-a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
...+|||.-....+...... ..+. +++..+-+.++|.+.+..++..
T Consensus 300 -A~G~PVI~~~~~~~~~e~~~~~~~~---G~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 300 -CWGIPVIYGPYTHKVNDLKEFLEKE---GAGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp -TTTCCEEECSCCTTSHHHHHHHHHT---TCEEECCSHHHHHHHHHHHHHS
T ss_pred -HhCCCEEECCCccChHHHHHHHHHC---CCEEEeCCHHHHHHHHHHHHhH
Confidence 24688874222222233322 2233 4666677889999999998874
No 152
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=76.97 E-value=12 Score=28.72 Aligned_cols=107 Identities=14% Similarity=0.139 Sum_probs=64.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEE--EECCHHHHHHHHHhcCCCccEEEEeCCCC------CCCHHHHHHHhccc
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVT--KCNRAEIALDMLRMSKNGYDIVISDVHMP------DMDGFKLHEQVGLE 88 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~--~~~~~~~~~~~l~~~~~~~dlvilD~~l~------~~~g~~l~~~l~~~ 88 (184)
..++.|+.+.+.. ..+........-.+. -.-+.++..+++.. .|++++-.... ++-|..+++.+.
T Consensus 229 ~~~l~i~G~g~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a-- 301 (394)
T 3okp_A 229 DAQLLIVGSGRYE-STLRRLATDVSQNVKFLGRLEYQDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA-- 301 (394)
T ss_dssp TCEEEEECCCTTH-HHHHHHTGGGGGGEEEEESCCHHHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--
T ss_pred CeEEEEEcCchHH-HHHHHHHhcccCeEEEcCCCCHHHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--
Confidence 4567777665432 333333322212232 22334666666652 58888855441 444666777663
Q ss_pred CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 89 MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 89 ~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
..+|+|.... ....+.+..| .+++..|-+.+++.+++..++.
T Consensus 302 ~G~PvI~~~~----~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 302 CGVPVIAGTS----GGAPETVTPA-TGLVVEGSDVDKLSELLIELLD 343 (394)
T ss_dssp TTCCEEECSS----TTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHT
T ss_pred cCCCEEEeCC----CChHHHHhcC-CceEeCCCCHHHHHHHHHHHHh
Confidence 4678876322 2233445667 8999999999999999999876
No 153
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=76.54 E-value=14 Score=27.34 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCccEEEE-eCCC---CCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 51 EIALDMLRMSKNGYDIVIS-DVHM---PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 51 ~~~~~~l~~~~~~~dlvil-D~~l---~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
.+....+. ...++.|++ +..- ..+-.++++++++...++|+|....-.+.+.+.++++.||++.+.=
T Consensus 159 ~e~~~~~~--~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 159 RDWVVEVE--KRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHH--HTTCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHH--HcCCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 44434433 244677666 3321 1112378888887667899998887777888889999999988743
No 154
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=76.38 E-value=15 Score=26.55 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCCccEEEE-eCCCCC---CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe------C
Q 029986 50 AEIALDMLRMSKNGYDIVIS-DVHMPD---MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL------K 119 (184)
Q Consensus 50 ~~~~~~~l~~~~~~~dlvil-D~~l~~---~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~------k 119 (184)
..+..+.+. +.++|.|++ +....+ .-..+.++.++...++|+++-..-.+.+.+.+++++||++++. .
T Consensus 156 ~~e~~~~~~--~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~ 233 (253)
T 1h5y_A 156 AVKWAKEVE--ELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFR 233 (253)
T ss_dssp HHHHHHHHH--HHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHH--hCCCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcC
Confidence 334344443 234777765 333211 1245677777655578988876666668888889999998863 3
Q ss_pred CCCHHHHHHHHH
Q 029986 120 PIRIKELRNIWQ 131 (184)
Q Consensus 120 P~~~~~l~~~l~ 131 (184)
+.+.+++.+.++
T Consensus 234 ~~~~~~~~~~l~ 245 (253)
T 1h5y_A 234 VLSIAQVKRYLK 245 (253)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 455566655543
No 155
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=76.36 E-value=24 Score=27.19 Aligned_cols=80 Identities=20% Similarity=0.189 Sum_probs=54.5
Q ss_pred HHHHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCC-----CCHHHHHHHhcccCCCCEEEEEccCChHHHHHH
Q 029986 35 KMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPD-----MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKG 108 (184)
Q Consensus 35 ~~L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-----~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a 108 (184)
..++..+..+. .+.+.+++..... ..+|.|+++-.-.+ ...++++..+....++|||.-..-.+.+.+..+
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~---~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~a 194 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVER---AGADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAA 194 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHH---TTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHH
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHH---cCCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHH
Confidence 34444455443 4677777766554 45899998642222 246778888765557898887766668889999
Q ss_pred HHcCCCceE
Q 029986 109 VTHGACNYL 117 (184)
Q Consensus 109 ~~~ga~~~l 117 (184)
+..||++..
T Consensus 195 l~~GA~gV~ 203 (326)
T 3bo9_A 195 FALGAEAVQ 203 (326)
T ss_dssp HHHTCSEEE
T ss_pred HHhCCCEEE
Confidence 999999875
No 156
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=76.26 E-value=20 Score=26.78 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=48.3
Q ss_pred CCeEE--EECCHHHHHHHHHhcCCCccEEEEeCC-CC---CCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCC
Q 029986 41 LYEVT--KCNRAEIALDMLRMSKNGYDIVISDVH-MP---DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGAC 114 (184)
Q Consensus 41 ~~~v~--~~~~~~~~~~~l~~~~~~~dlvilD~~-l~---~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~ 114 (184)
|..+. .+.+.+++..... ...|.|+.-.. .+ +..+.+.++.+++..++|+++...-.+.+.+..++..||+
T Consensus 126 g~~vi~~~~~~~~~a~~~~~---~gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAd 202 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEE---LGVHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGAD 202 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHH---HTCSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCS
T ss_pred CeEEEEEcCCCHHHHHHHHH---hCCCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCC
Confidence 55544 4456665555443 33566633011 11 1224677888866668999988777778999999999999
Q ss_pred ceEe
Q 029986 115 NYLL 118 (184)
Q Consensus 115 ~~l~ 118 (184)
+.++
T Consensus 203 gViV 206 (264)
T 1xm3_A 203 GVLL 206 (264)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9873
No 157
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=75.75 E-value=29 Score=27.80 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=59.9
Q ss_pred CeEEEEe----CCHHHHHHHHHHHHhcCCeEE--EECCHHHHHHHHHhcCCCccEEEEeCCC-----------CCCCHHH
Q 029986 18 LRVLVVD----DDPIWLRILEKMLRKCLYEVT--KCNRAEIALDMLRMSKNGYDIVISDVHM-----------PDMDGFK 80 (184)
Q Consensus 18 ~~Ilivd----d~~~~~~~l~~~L~~~~~~v~--~~~~~~~~~~~l~~~~~~~dlvilD~~l-----------~~~~g~~ 80 (184)
..++++| ......+.++..-+..+..+. .+.+.+++..+.. .++|.|.+...- .+...+.
T Consensus 157 vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~---aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~ 233 (400)
T 3ffs_A 157 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE---NGADGIKVGIGPGSICTTRIVAGVGVPQIT 233 (400)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHH---TTCSEEEECC---------CCSCBCCCHHH
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHH---cCCCEEEEeCCCCcCcccccccccchhHHH
Confidence 4566664 233334444443333355443 6788888887765 568999983210 0123355
Q ss_pred HHHHhcc---cCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 81 LHEQVGL---EMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 81 l~~~l~~---~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
++..+.. ..++|||.-..-.+...+.+++.+||+...
T Consensus 234 al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~ 273 (400)
T 3ffs_A 234 AIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVM 273 (400)
T ss_dssp HHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 5665532 247898877666778999999999999875
No 158
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=75.17 E-value=24 Score=26.55 Aligned_cols=111 Identities=9% Similarity=0.023 Sum_probs=69.1
Q ss_pred CCeEEEE----eCCHHHHHHHHHH--------HHhc-CCeEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCCCCC-HH
Q 029986 17 GLRVLVV----DDDPIWLRILEKM--------LRKC-LYEVTKCN---RAEIALDMLRMSKNGYDIVISDVHMPDMD-GF 79 (184)
Q Consensus 17 ~~~Iliv----dd~~~~~~~l~~~--------L~~~-~~~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~~-g~ 79 (184)
..+|++. |-+..=...+..+ |+.. ||+|.... ..++..+.+. +..||+|.+...+...+ ..
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~--e~~~d~VglS~l~t~~~~~~ 197 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAV--ELEADVLLVSQTVTQKNVHI 197 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHH--HTTCSEEEEECCCCTTSHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHH--HcCCCEEEEEeecCCccchH
Confidence 3456554 5666667777777 8898 99987433 5677777776 45699999998887632 22
Q ss_pred ----HHHHHhcccC---CCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHH
Q 029986 80 ----KLHEQVGLEM---DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQH 132 (184)
Q Consensus 80 ----~l~~~l~~~~---~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~ 132 (184)
++++.++... +++| ++...... ...+.+.|++.|+.--....++...+..
T Consensus 198 ~~~~~~i~~L~~~g~~~~i~v-ivGG~~~~--~~~a~~iGad~~~~da~~~~~~a~~l~~ 254 (262)
T 1xrs_B 198 QNMTHLIELLEAEGLRDRFVL-LCGGPRIN--NEIAKELGYDAGFGPGRFADDVATFAVK 254 (262)
T ss_dssp HHHHHHHHHHHHTTCGGGSEE-EEECTTCC--HHHHHTTTCSEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEE-EEECCcCC--HHHHHHcCCeEEECCchHHHHHHHHHHH
Confidence 2455554321 2444 44443322 2236678999888766666666554443
No 159
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=75.11 E-value=12 Score=22.87 Aligned_cols=92 Identities=11% Similarity=0.150 Sum_probs=55.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhc--CCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 20 VLVVDDDPIWLRILEKMLRKC--LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~--~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
.+++.-+........+.-+.. |-.+..+.+.++..+.++. ++ ....|++++.
T Consensus 5 llvistdtniissvqerakhnypgryirtatssqdirdiiks-------------------------mk-dngkplvvfv 58 (112)
T 2lnd_A 5 LLVISTDTNIISSVQERAKHNYPGRYIRTATSSQDIRDIIKS-------------------------MK-DNGKPLVVFV 58 (112)
T ss_dssp EEEECSCHHHHHHHHHHHHHHSCTTTEEEECSHHHHHHHHHH-------------------------HT-TCCSCEEEEE
T ss_pred EEEEecCchHHHHHHHHhhcCCCCceeeeccchhhHHHHHHH-------------------------HH-hcCCeEEEEe
Confidence 344555554444444433322 5566677776666655542 11 1233444444
Q ss_pred ccCCh----HHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 98 VDGCT----QDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 98 ~~~~~----~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
..+.. +...+|.+.|+..-++|.-++++|.+.++..++..
T Consensus 59 ngasqndvnefqneakkegvsydvlkstdpeeltqrvreflkta 102 (112)
T 2lnd_A 59 NGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLKTA 102 (112)
T ss_dssp CSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred cCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHHhc
Confidence 33332 33456778899988999999999999999988643
No 160
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=73.51 E-value=30 Score=26.98 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=65.9
Q ss_pred CCeEEEEeCC---HHHHHHHHHHHHhcCC--eEEEEC--CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccC
Q 029986 17 GLRVLVVDDD---PIWLRILEKMLRKCLY--EVTKCN--RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEM 89 (184)
Q Consensus 17 ~~~Ilivdd~---~~~~~~l~~~L~~~~~--~v~~~~--~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~ 89 (184)
..+++|+.+. ......+....++.+. .+.... +.++..+++.. .|++++-.. .+.-|..+++.+. .
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~ 348 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NESFGLVAMEAQA--S 348 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--T
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-ccCCchHHHHHHH--c
Confidence 4567777761 1234556666665442 243333 33566666652 578777543 3344566666663 4
Q ss_pred CCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 90 DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 90 ~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
.+|||... . ....+.+..|..+++..|.+.+++.+++..++.
T Consensus 349 G~PvI~~~-~---~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 349 GTPVIAAR-V---GGLPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp TCCEEEES-C---TTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEecC-C---CChhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 67887642 2 233445667788999999999999999998876
No 161
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=73.40 E-value=22 Score=25.45 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=43.4
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEeCCCC--------CCCHHHHHHHhcccCC-CCEEEEEccCChHHHHHHHHcCCCce
Q 029986 46 KCNRAEIALDMLRMSKNGYDIVISDVHMP--------DMDGFKLHEQVGLEMD-LPVIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~dlvilD~~l~--------~~~g~~l~~~l~~~~~-~~iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
.+.+..++..... .++|.+++....+ ...+++.++.++...+ +|+++...-. .+.+..++..|++++
T Consensus 122 s~~t~~e~~~a~~---~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv 197 (227)
T 2tps_A 122 SAHTMSEVKQAEE---DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGV 197 (227)
T ss_dssp EECSHHHHHHHHH---HTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEE
T ss_pred ecCCHHHHHHHHh---CCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEE
Confidence 3567777555443 3489998632222 1236777888754444 8888775443 677777888999987
Q ss_pred E
Q 029986 117 L 117 (184)
Q Consensus 117 l 117 (184)
.
T Consensus 198 ~ 198 (227)
T 2tps_A 198 S 198 (227)
T ss_dssp E
T ss_pred E
Confidence 5
No 162
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=73.18 E-value=24 Score=25.69 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=41.3
Q ss_pred HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe------CCCCHHHHHHHHH
Q 029986 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL------KPIRIKELRNIWQ 131 (184)
Q Consensus 79 ~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~------kP~~~~~l~~~l~ 131 (184)
++++++++...++|+|....-.+.+.+.++++.|+++.+. .|.+..++.+.+.
T Consensus 185 ~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l~ 243 (252)
T 1ka9_F 185 LRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYLA 243 (252)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7888888766689999887777778888889999999873 4667777766544
No 163
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=72.83 E-value=15 Score=27.16 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhcCCCccEEE-EeCCCCC---CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 49 RAEIALDMLRMSKNGYDIVI-SDVHMPD---MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvi-lD~~l~~---~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
+..+..+.+. +.+.|.+. .|....+ ..-+++++.++...++|+++...-.+...+..+++.||+..+.-
T Consensus 31 ~~~~~a~~~~--~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 31 LLRDWVVEVE--KRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EHHHHHHHHH--HHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CHHHHHHHHH--HCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 3444444444 23355444 4654321 12267888887667899998766666788889999999988754
No 164
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=72.60 E-value=18 Score=23.83 Aligned_cols=93 Identities=11% Similarity=0.094 Sum_probs=48.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEC-CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCN-RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~-~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iI 94 (184)
+..|.++|.++...+.+. ..|+.+.... +..+.+.... -...|++++-+.-.. ....++..++. .+..++|
T Consensus 30 g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~--i~~ad~vi~~~~~~~-~n~~~~~~a~~~~~~~~ii 102 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAH--LECAKWLILTIPNGY-EAGEIVASARAKNPDIEII 102 (140)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTT--GGGCSEEEECCSCHH-HHHHHHHHHHHHCSSSEEE
T ss_pred CCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcC--cccCCEEEEECCChH-HHHHHHHHHHHHCCCCeEE
Confidence 456888888876655443 3466554322 1122333222 124688887542111 11223334433 3566666
Q ss_pred EEEccCChHHHHHHHHcCCCceEe
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
..+ .+.+......+.|++..+.
T Consensus 103 ar~--~~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 103 ARA--HYDDEVAYITERGANQVVM 124 (140)
T ss_dssp EEE--SSHHHHHHHHHTTCSEEEE
T ss_pred EEE--CCHHHHHHHHHCCCCEEEC
Confidence 554 4466777778899985554
No 165
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=72.53 E-value=34 Score=27.05 Aligned_cols=98 Identities=18% Similarity=0.203 Sum_probs=60.6
Q ss_pred CeEEEEe----CCHHHHHHHHHHHHhc-CCeE--EEECCHHHHHHHHHhcCCCccEEEEeCCCC-----------CCCHH
Q 029986 18 LRVLVVD----DDPIWLRILEKMLRKC-LYEV--TKCNRAEIALDMLRMSKNGYDIVISDVHMP-----------DMDGF 79 (184)
Q Consensus 18 ~~Ilivd----d~~~~~~~l~~~L~~~-~~~v--~~~~~~~~~~~~l~~~~~~~dlvilD~~l~-----------~~~g~ 79 (184)
..++++| +.+...+.++.+-+.. +..+ ..+.+.+++..+.. .+.|.|.+...-. +...+
T Consensus 121 vd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~---aGAD~I~vG~gpGs~~~tr~~~g~g~p~~ 197 (366)
T 4fo4_A 121 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIE---AGVSAVKVGIGPGSICTTRIVTGVGVPQI 197 (366)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHH---HTCSEEEECSSCSTTBCHHHHHCCCCCHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHH---cCCCEEEEecCCCCCCCcccccCcccchH
Confidence 3466665 3344444444444443 4443 35788888888765 4589998832111 11234
Q ss_pred HHHHHhc---ccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 80 KLHEQVG---LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 80 ~l~~~l~---~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
..+..+. ...++|||.-..-.+...+.+++.+||+....
T Consensus 198 ~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 198 TAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp HHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4455443 23478998877777788999999999987753
No 166
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=72.43 E-value=20 Score=24.37 Aligned_cols=108 Identities=15% Similarity=0.158 Sum_probs=66.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHH--hc----CCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLR--KC----LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMD 90 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~--~~----~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~ 90 (184)
..+++++.+.+.. ..+...+. .. .....-.-+.++...++.. .|++++-.. .+.-|..+++.+. ..
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama--~G 121 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA--SG 121 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH--TT
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH--cC
Confidence 4567777654432 23333343 21 2233334445556666652 578887333 3344666777663 46
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
+|+|... .....+.+..|..+++. +.+.+++.+.+..++...
T Consensus 122 ~PvI~~~----~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~~ 163 (177)
T 2f9f_A 122 KPVIAVN----EGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKNP 163 (177)
T ss_dssp CCEEEES----SHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHCT
T ss_pred CcEEEeC----CCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhCH
Confidence 7887642 24455666778888999 999999999999998643
No 167
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=71.95 E-value=24 Score=28.40 Aligned_cols=99 Identities=9% Similarity=0.057 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCC--eEEEEC--CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHH
Q 029986 30 LRILEKMLRKCLY--EVTKCN--RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDV 105 (184)
Q Consensus 30 ~~~l~~~L~~~~~--~v~~~~--~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~ 105 (184)
.+.+....++.|. .|.... +.++..+++.......|++++-.. .++-|..+++.+. ..+|||... ....
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~-~Eg~~~~~lEAma--~G~PvI~s~----~~g~ 393 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSF-YEPFGLAPVEAMA--SGLPAVVTR----NGGP 393 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCS-CBCCCSHHHHHHH--TTCCEEEES----SBHH
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcc-cCCCCcHHHHHHH--cCCCEEEec----CCCH
Confidence 6677777776553 244333 346666666521001288887543 3444566677663 467887642 2344
Q ss_pred HHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 106 MKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 106 ~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
.+.+..|..+++..|.+.+++.+++..++.
T Consensus 394 ~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 394 AEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp HHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred HHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 556677888999999999999999998876
No 168
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=71.94 E-value=26 Score=26.24 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=52.6
Q ss_pred CeEEEEeC-CHH---HHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCH--HHHHHHhccc-CC
Q 029986 18 LRVLVVDD-DPI---WLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDG--FKLHEQVGLE-MD 90 (184)
Q Consensus 18 ~~Ilivdd-~~~---~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g--~~l~~~l~~~-~~ 90 (184)
|++.++-. .+. ..+.+...|++.|+++. ...+|+||+= ++|| ...++.+... .+
T Consensus 1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~---------------~~~~D~vv~l----GGDGT~l~aa~~~~~~~~~ 61 (272)
T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYD---------------DVEPEIVISI----GGDGTFLSAFHQYEERLDE 61 (272)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTSSCEEC---------------SSSCSEEEEE----ESHHHHHHHHHHTGGGTTT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEeC---------------CCCCCEEEEE----cCcHHHHHHHHHHhhcCCC
Confidence 35555543 332 23345556777777761 2347988872 6677 3334444322 47
Q ss_pred CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 91 LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 91 ~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
+|++-+. . |-.+|+. .+..+++..++..++.+..
T Consensus 62 ~PilGIn-~------------G~lgfl~-~~~~~~~~~~l~~l~~g~~ 95 (272)
T 2i2c_A 62 IAFIGIH-T------------GHLGFYA-DWRPAEADKLVKLLAKGEY 95 (272)
T ss_dssp CEEEEEE-S------------SSCCSSC-CBCGGGHHHHHHHHHTTCC
T ss_pred CCEEEEe-C------------CCCCcCC-cCCHHHHHHHHHHHHcCCC
Confidence 8887773 2 5566665 5567788888998887654
No 169
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=71.54 E-value=21 Score=28.65 Aligned_cols=92 Identities=20% Similarity=0.202 Sum_probs=53.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCH--HHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRA--EIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~--~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~i 93 (184)
+..|+++|.++...+.+. ..|+.+.. .++ .+.+.... -...|+||+-+.-. .....++..++. .++++|
T Consensus 27 g~~vvvId~d~~~v~~~~----~~g~~vi~-GDat~~~~L~~ag--i~~A~~viv~~~~~-~~n~~i~~~ar~~~p~~~I 98 (413)
T 3l9w_A 27 GVKMVVLDHDPDHIETLR----KFGMKVFY-GDATRMDLLESAG--AAKAEVLINAIDDP-QTNLQLTEMVKEHFPHLQI 98 (413)
T ss_dssp TCCEEEEECCHHHHHHHH----HTTCCCEE-SCTTCHHHHHHTT--TTTCSEEEECCSSH-HHHHHHHHHHHHHCTTCEE
T ss_pred CCCEEEEECCHHHHHHHH----hCCCeEEE-cCCCCHHHHHhcC--CCccCEEEECCCCh-HHHHHHHHHHHHhCCCCeE
Confidence 567888898887665543 44665542 232 22333322 23478888855311 112333444443 356677
Q ss_pred EEEEccCChHHHHHHHHcCCCceEe
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
|+-+ .+........++||+..+.
T Consensus 99 iara--~~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 99 IARA--RDVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp EEEE--SSHHHHHHHHHTTCSSCEE
T ss_pred EEEE--CCHHHHHHHHHCCCCEEEC
Confidence 7665 4567777888999997764
No 170
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=71.25 E-value=10 Score=28.92 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=43.6
Q ss_pred HHHHHHHhcccCCCCEEEEEc--cCChHHHHHHHHcCCCceE-----eCCCCHHHHHHHHHHHHcC
Q 029986 78 GFKLHEQVGLEMDLPVIMMSV--DGCTQDVMKGVTHGACNYL-----LKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 78 g~~l~~~l~~~~~~~iIi~~~--~~~~~~~~~a~~~ga~~~l-----~kP~~~~~l~~~l~~~~~~ 136 (184)
.++++++++...++||+++++ -.+++.+..+++.|+++.+ .+--++....+.+..+...
T Consensus 186 d~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~ 251 (291)
T 3o07_A 186 PVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTH 251 (291)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHh
Confidence 367888887667899988733 3457889999999999996 4444567777777776654
No 171
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=70.97 E-value=10 Score=28.93 Aligned_cols=57 Identities=11% Similarity=0.032 Sum_probs=44.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhcccC--CCCEEEEEccCChHHHHHHHHcCCCceEeCC
Q 029986 63 GYDIVISDVHMPDMDGFKLHEQVGLEM--DLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120 (184)
Q Consensus 63 ~~dlvilD~~l~~~~g~~l~~~l~~~~--~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP 120 (184)
+.++|.+|..- .....++++++++.. .+|+++=..-.+.+.+.+++++||+..++--
T Consensus 199 G~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 199 GFHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp TCSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 45899999754 334468888886554 7888877777888999999999999887543
No 172
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=70.96 E-value=8.9 Score=28.62 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=54.4
Q ss_pred CHHHHHHHHHhcCCCccEEEEeC---CC-CC-CCHHHHHHHhccc-CCCCEEE-EEccCChHHHHHHHHcCCCceEeCCC
Q 029986 49 RAEIALDMLRMSKNGYDIVISDV---HM-PD-MDGFKLHEQVGLE-MDLPVIM-MSVDGCTQDVMKGVTHGACNYLLKPI 121 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~---~l-~~-~~g~~l~~~l~~~-~~~~iIi-~~~~~~~~~~~~a~~~ga~~~l~kP~ 121 (184)
+..+.++.+.. .+.|.+-+|+ .. |. .-|..+++.++.. ++.|+-+ +....-..+...+.++||+.+-....
T Consensus 41 ~L~~~i~~l~~--~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~E 118 (246)
T 3inp_A 41 RLGDDVKAVLA--AGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPE 118 (246)
T ss_dssp GHHHHHHHHHH--TTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGG
T ss_pred hHHHHHHHHHH--cCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccc
Confidence 45666666652 3355555554 32 33 2478889999754 3677654 33333356788889999998877766
Q ss_pred CHHHHHHHHHHHHcC
Q 029986 122 RIKELRNIWQHVAQQ 136 (184)
Q Consensus 122 ~~~~l~~~l~~~~~~ 136 (184)
....+.+.++.+.+.
T Consensus 119 a~~~~~~~i~~ir~~ 133 (246)
T 3inp_A 119 ASEHIDRSLQLIKSF 133 (246)
T ss_dssp GCSCHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHc
Confidence 556677777777543
No 173
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=70.74 E-value=12 Score=26.12 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=31.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh--cCCeEEEECCHHHHHHHHHhcCCCccEEEEeCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRK--CLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH 72 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~--~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~ 72 (184)
+.+|+++|-|+.. .+..++.. .++.+..... ....+.+..-...+|+||+|.-
T Consensus 30 g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~~ 84 (206)
T 4dzz_A 30 GYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDGA 84 (206)
T ss_dssp TCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEECC
T ss_pred CCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEECC
Confidence 5689999987643 23344432 2456655544 3333444332456999999974
No 174
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=70.40 E-value=16 Score=27.80 Aligned_cols=106 Identities=18% Similarity=0.304 Sum_probs=63.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iI 94 (184)
+.+++++.+.+. +.+....+..+. .+......++..+++.. .|++++-.. .++-|..+++.+. ..+|+|
T Consensus 228 ~~~l~i~G~g~~--~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~-~e~~~~~~~Ea~a--~G~Pvi 298 (374)
T 2iw1_A 228 NTLLFVVGQDKP--RKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAY-QEAAGIVLLEAIT--AGLPVL 298 (374)
T ss_dssp TEEEEEESSSCC--HHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--HTCCEE
T ss_pred ceEEEEEcCCCH--HHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEeccc-cCCcccHHHHHHH--CCCCEE
Confidence 456777776442 345555554432 34444333444555542 478777543 3444666677663 357888
Q ss_pred EEEccCChHHHHHHHHcCCCceEeC-CCCHHHHHHHHHHHHc
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLLK-PIRIKELRNIWQHVAQ 135 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~k-P~~~~~l~~~l~~~~~ 135 (184)
........ +.+..|..+++.. |.+.+++.+.+..++.
T Consensus 299 ~~~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 299 TTAVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp EETTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred EecCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 65332222 3445567788887 8999999999998876
No 175
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=70.37 E-value=34 Score=26.22 Aligned_cols=80 Identities=21% Similarity=0.204 Sum_probs=54.1
Q ss_pred HHHHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCC-------CCHHHHHHHhcccCCCCEEEEEccCChHHHH
Q 029986 35 KMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPD-------MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVM 106 (184)
Q Consensus 35 ~~L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-------~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~ 106 (184)
..++..|..+. .+.+.+++..... ..+|.++++-.-.+ ...++++++++...++||++-..-.+.+.+.
T Consensus 112 ~~l~~~gi~vi~~v~t~~~a~~~~~---~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~ 188 (328)
T 2gjl_A 112 AEFRRHGVKVIHKCTAVRHALKAER---LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLV 188 (328)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHH---TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHH
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHH---cCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 34444455443 4667777766554 45899998642221 2467788888655678998876666778888
Q ss_pred HHHHcCCCceE
Q 029986 107 KGVTHGACNYL 117 (184)
Q Consensus 107 ~a~~~ga~~~l 117 (184)
.++..||++..
T Consensus 189 ~al~~GAdgV~ 199 (328)
T 2gjl_A 189 AALALGADAIN 199 (328)
T ss_dssp HHHHHTCSEEE
T ss_pred HHHHcCCCEEE
Confidence 99999999875
No 176
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=70.10 E-value=12 Score=26.89 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=45.7
Q ss_pred EEECCHHHHHHHHHhcCCCccEEEEeCCCCCC--------CHHHHHHHhccc--CCCCEEEEEccCChHHHHHHHHcCCC
Q 029986 45 TKCNRAEIALDMLRMSKNGYDIVISDVHMPDM--------DGFKLHEQVGLE--MDLPVIMMSVDGCTQDVMKGVTHGAC 114 (184)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~--------~g~~l~~~l~~~--~~~~iIi~~~~~~~~~~~~a~~~ga~ 114 (184)
..+.+.+++.... .+.|.+.++-..|.. -|++.++.+... .++|++.+..- +.+.+..+++.|++
T Consensus 93 ~s~~t~~e~~~A~----~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI-~~~nv~~~~~~Ga~ 167 (210)
T 3ceu_A 93 CSCHSVEEVKNRK----HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGI-NEDNLLEIKDFGFG 167 (210)
T ss_dssp EEECSHHHHHTTG----GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSC-CTTTHHHHHHTTCS
T ss_pred EecCCHHHHHHHh----hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCC-CHHHHHHHHHhCCC
Confidence 3567777665432 348999887654422 256777777543 57899887553 47778889999999
Q ss_pred ceE
Q 029986 115 NYL 117 (184)
Q Consensus 115 ~~l 117 (184)
+.-
T Consensus 168 gVa 170 (210)
T 3ceu_A 168 GAV 170 (210)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 177
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=69.81 E-value=18 Score=22.73 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=20.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVT 45 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~ 45 (184)
+|+|+..+......+-..++..||.|+
T Consensus 53 kiliisndkqllkemlelisklgykvf 79 (134)
T 2lci_A 53 KILIISNDKQLLKEMLELISKLGYKVF 79 (134)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHhCceeE
Confidence 578888887777777777777777665
No 178
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=69.80 E-value=11 Score=27.56 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=50.2
Q ss_pred CHHHHHHHHHhcCCCccEEEEeC---CC-CC-CCHHHHHHHhcccCCCCEE--EEEccCChHHHHHHHHcCCCceEeCCC
Q 029986 49 RAEIALDMLRMSKNGYDIVISDV---HM-PD-MDGFKLHEQVGLEMDLPVI--MMSVDGCTQDVMKGVTHGACNYLLKPI 121 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~---~l-~~-~~g~~l~~~l~~~~~~~iI--i~~~~~~~~~~~~a~~~ga~~~l~kP~ 121 (184)
+..+.++.+. +.+.|++=+|+ .. |. ..|.++++.++...+.|+. ++.. ....+...+.++||++......
T Consensus 18 ~l~~~i~~~~--~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~-dp~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 18 RLGEEIKAVD--EAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIV-EPEKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp GHHHHHHHHH--HTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESS-SGGGTHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHH--HcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEcc-CHHHHHHHHHHcCCCEEEECcc
Confidence 3444455444 23456554544 21 12 2367899999765455554 4443 2245778899999999977766
Q ss_pred --CHHHHHHHHHHHHc
Q 029986 122 --RIKELRNIWQHVAQ 135 (184)
Q Consensus 122 --~~~~l~~~l~~~~~ 135 (184)
..+...+.++.+..
T Consensus 95 ~~~~~~~~~~~~~i~~ 110 (230)
T 1tqj_A 95 HNASPHLHRTLCQIRE 110 (230)
T ss_dssp TTTCTTHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHH
Confidence 44556666776654
No 179
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=69.71 E-value=28 Score=25.28 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=48.8
Q ss_pred CHHHHHHHHHhcCCCccEEE-EeCCCCC---CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHc---CCCceE----
Q 029986 49 RAEIALDMLRMSKNGYDIVI-SDVHMPD---MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTH---GACNYL---- 117 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvi-lD~~l~~---~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~---ga~~~l---- 117 (184)
+..+....+. +.+++.|+ .+..-.+ +-.++++++++...++|||.-..-.+.+.+.++++. |+++++
T Consensus 147 ~~~e~~~~~~--~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~a 224 (244)
T 1vzw_A 147 DLYETLDRLN--KEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 224 (244)
T ss_dssp BHHHHHHHHH--HTTCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHH
T ss_pred CHHHHHHHHH--hCCCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHH
Confidence 4444434433 24577555 4543211 123678888865567899988777767899999998 999886
Q ss_pred --eCCCCHHHHHHH
Q 029986 118 --LKPIRIKELRNI 129 (184)
Q Consensus 118 --~kP~~~~~l~~~ 129 (184)
..|++..++.+.
T Consensus 225 l~~~~~~~~~~~~~ 238 (244)
T 1vzw_A 225 LYAKAFTLEEALEA 238 (244)
T ss_dssp HHTTSSCHHHHHHH
T ss_pred HHcCCCCHHHHHHH
Confidence 345565555444
No 180
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=69.68 E-value=30 Score=26.32 Aligned_cols=68 Identities=10% Similarity=0.016 Sum_probs=45.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHh
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD-MDGFKLHEQV 85 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-~~g~~l~~~l 85 (184)
-++.+||-++...+.|++-++...-......|+..++..+......+|+||+|---.. .+.-.+++.+
T Consensus 114 d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L 182 (283)
T 2oo3_A 114 DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAI 182 (283)
T ss_dssp SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHH
Confidence 4799999999999998888866433334566777777665432335899999974442 3444455544
No 181
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=69.06 E-value=37 Score=26.13 Aligned_cols=78 Identities=21% Similarity=0.184 Sum_probs=52.6
Q ss_pred HHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCC-----CCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHH
Q 029986 37 LRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMP-----DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVT 110 (184)
Q Consensus 37 L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~-----~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~ 110 (184)
++..+..+. .+.+.+.+..... ..+|.|+++-.-. ....+++++.++...++|||.-..-.+.+.+..++.
T Consensus 106 l~~~g~~v~~~v~~~~~a~~~~~---~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~ 182 (332)
T 2z6i_A 106 FHEAGIIVIPVVPSVALAKRMEK---IGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFM 182 (332)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHH---TTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCHHHHHHHHH---cCCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH
Confidence 344455443 4666666655443 4589999864211 134578888886556789988777666888899999
Q ss_pred cCCCceE
Q 029986 111 HGACNYL 117 (184)
Q Consensus 111 ~ga~~~l 117 (184)
.||++..
T Consensus 183 ~GAdgV~ 189 (332)
T 2z6i_A 183 LGAEAVQ 189 (332)
T ss_dssp TTCSEEE
T ss_pred cCCCEEE
Confidence 9998764
No 182
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=68.81 E-value=21 Score=25.36 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=48.8
Q ss_pred HHHHhcCCeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHhcccC--CCCEEEEEccCChHHHHHHHH
Q 029986 35 KMLRKCLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMP-DMDGFKLHEQVGLEM--DLPVIMMSVDGCTQDVMKGVT 110 (184)
Q Consensus 35 ~~L~~~~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~-~~~g~~l~~~l~~~~--~~~iIi~~~~~~~~~~~~a~~ 110 (184)
...+..|..+ ..+.+..++..... .++|.|.+ .| +..|.+.++++.... ++||+....- +.+.+..+++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~---~G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI-~~~~i~~~~~ 167 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALE---AGAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGV-TPENLAQWID 167 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHH---TTCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSC-CTTTHHHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHH---CCCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCC-CHHHHHHHHH
Confidence 3344445432 23677787766543 45898886 22 123567777775433 4788777554 3777888889
Q ss_pred cCCCceEe
Q 029986 111 HGACNYLL 118 (184)
Q Consensus 111 ~ga~~~l~ 118 (184)
+|++++..
T Consensus 168 ~Ga~gv~v 175 (212)
T 2v82_A 168 AGCAGAGL 175 (212)
T ss_dssp HTCSEEEE
T ss_pred cCCCEEEE
Confidence 99998873
No 183
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=68.41 E-value=28 Score=24.54 Aligned_cols=109 Identities=7% Similarity=-0.061 Sum_probs=59.1
Q ss_pred EEEEeCCH--HHHHHHHHHHHhcCCeEEEE----CCHHHHHHHHHhcCCCccEEEEeCCCC----CCCHHHHHHHhccc-
Q 029986 20 VLVVDDDP--IWLRILEKMLRKCLYEVTKC----NRAEIALDMLRMSKNGYDIVISDVHMP----DMDGFKLHEQVGLE- 88 (184)
Q Consensus 20 Ilivdd~~--~~~~~l~~~L~~~~~~v~~~----~~~~~~~~~l~~~~~~~dlvilD~~l~----~~~g~~l~~~l~~~- 88 (184)
.+++-+.+ .....+.+.+++.|..+... .+..+....+. +.+.|.|-++.... ...+.+.+++++..
T Consensus 80 ~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~--~~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~~ 157 (211)
T 3f4w_A 80 YVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLE--EAGADMLAVHTGTDQQAAGRKPIDDLITMLKVR 157 (211)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHH--HHTCCEEEEECCHHHHHTTCCSHHHHHHHHHHC
T ss_pred EEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH--HcCCCEEEEcCCCcccccCCCCHHHHHHHHHHc
Confidence 44444433 33345555666667655431 23323333333 23478877763211 11346777777654
Q ss_pred CCCCEEEEEccCChHHHHHHHHcCCCceE-----eCCCCHHHHHHHHH
Q 029986 89 MDLPVIMMSVDGCTQDVMKGVTHGACNYL-----LKPIRIKELRNIWQ 131 (184)
Q Consensus 89 ~~~~iIi~~~~~~~~~~~~a~~~ga~~~l-----~kP~~~~~l~~~l~ 131 (184)
++.|+++-..- +.+.+..++++|++.++ .+.-++.+-.+.+.
T Consensus 158 ~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~ 204 (211)
T 3f4w_A 158 RKARIAVAGGI-SSQTVKDYALLGPDVVIVGSAITHAADPAGEARKIS 204 (211)
T ss_dssp SSCEEEEESSC-CTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHH
T ss_pred CCCcEEEECCC-CHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHH
Confidence 46777665443 47788889999999886 34444444333333
No 184
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=68.12 E-value=13 Score=29.82 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 51 EIALDMLRMSKNGYDIVISDVHMPDMD-GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 51 ~~~~~~l~~~~~~~dlvilD~~l~~~~-g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.+..+.+. +.++|+|++|....... -.++++.++...++||++ ..-.+.+.+..+.++||+....
T Consensus 146 ~e~~~~lv--eaGvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~-g~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLV--EAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIV-GNVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHH--HHTCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHH--HcCCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEE-eecCCHHHHHHHHHcCCCEEEE
Confidence 34444443 34589999997654332 257788886544677765 2234578889999999998876
No 185
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=68.04 E-value=20 Score=27.74 Aligned_cols=106 Identities=17% Similarity=0.263 Sum_probs=60.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi 95 (184)
.+++|+.+.+. ...+...++..+. .|......++..+++. . .|++++-.. .++-|..+++.+. ..+|+|.
T Consensus 242 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~--adv~v~ps~-~e~~~~~~~EAma--~G~PvI~ 313 (394)
T 2jjm_A 242 AKLLLVGDGPE-FCTILQLVKNLHIEDRVLFLGKQDNVAELLA--M--SDLMLLLSE-KESFGLVLLEAMA--CGVPCIG 313 (394)
T ss_dssp CEEEEECCCTT-HHHHHHHHHTTTCGGGBCCCBSCSCTHHHHH--T--CSEEEECCS-CCSCCHHHHHHHH--TTCCEEE
T ss_pred CEEEEECCchH-HHHHHHHHHHcCCCCeEEEeCchhhHHHHHH--h--CCEEEeccc-cCCCchHHHHHHh--cCCCEEE
Confidence 45666665432 2344444444321 1222222233334443 2 588887544 3444566677663 4678876
Q ss_pred EEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
..... ..+.+..|-.+++..|-+.+++.+.+..++.
T Consensus 314 ~~~~~----~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 314 TRVGG----IPEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp ECCTT----STTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred ecCCC----hHHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 53322 2234455778999999999999999998876
No 186
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=67.67 E-value=43 Score=26.33 Aligned_cols=96 Identities=19% Similarity=0.252 Sum_probs=57.7
Q ss_pred eEEEEe----CCHHHHHHHHHHHHhcCCeEE--EECCHHHHHHHHHhcCCCccEEEEeCCCC-----------CCCHHHH
Q 029986 19 RVLVVD----DDPIWLRILEKMLRKCLYEVT--KCNRAEIALDMLRMSKNGYDIVISDVHMP-----------DMDGFKL 81 (184)
Q Consensus 19 ~Ilivd----d~~~~~~~l~~~L~~~~~~v~--~~~~~~~~~~~l~~~~~~~dlvilD~~l~-----------~~~g~~l 81 (184)
.+++++ +.....+.++..-+..+..+. .+.+.+++..+.. .+.|.|.+-..-. +...++.
T Consensus 119 d~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~---aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~ 195 (361)
T 3khj_A 119 DVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE---NGADGIKVGIGPGSICTTRIVAGVGVPQITA 195 (361)
T ss_dssp SEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHH---TTCSEEEECSSCCTTCCHHHHTCBCCCHHHH
T ss_pred CeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHH---cCcCEEEEecCCCcCCCcccccCCCCCcHHH
Confidence 355553 233344455444444455443 5778888877764 4589998832110 1123444
Q ss_pred HHHhc---ccCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 82 HEQVG---LEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 82 ~~~l~---~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
+..+. ...++|||.-..-.+...+.+++.+||+...
T Consensus 196 i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~ 234 (361)
T 3khj_A 196 IEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVM 234 (361)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 55442 2236898877666678899999999999775
No 187
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=67.63 E-value=8.1 Score=29.32 Aligned_cols=106 Identities=14% Similarity=0.056 Sum_probs=61.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEE--CCHHHHHHHHHhcCCCccEEEEeCC---------CCCCCHHHHHHHhc
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKC--NRAEIALDMLRMSKNGYDIVISDVH---------MPDMDGFKLHEQVG 86 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~--~~~~~~~~~l~~~~~~~dlvilD~~---------l~~~~g~~l~~~l~ 86 (184)
.+++|+.+.+ ....+.++.+..+-.+... -+..+..+++.. .|++++-.. ..+.-|..+++.+.
T Consensus 189 ~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma 263 (342)
T 2iuy_A 189 RRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAAV 263 (342)
T ss_dssp CCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHHH
T ss_pred cEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHHh
Confidence 4566776543 2233333333322223322 234444555542 588887544 23445666777663
Q ss_pred ccCCCCEEEEEccCChHHHHHHHHc--CCCceEeCCCCHHHHHHHHHHHHc
Q 029986 87 LEMDLPVIMMSVDGCTQDVMKGVTH--GACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 87 ~~~~~~iIi~~~~~~~~~~~~a~~~--ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
..+|+|.... ....+.+.. |..+++..| +.+++.+.+..++.
T Consensus 264 --~G~PvI~s~~----~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 264 --SGTPVVGTGN----GCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp --TTCCEEECCT----TTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred --cCCCEEEcCC----CChHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 4678875422 335556667 788899999 99999998887654
No 188
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=67.35 E-value=45 Score=26.49 Aligned_cols=107 Identities=13% Similarity=0.097 Sum_probs=68.5
Q ss_pred CCeEEEEeCCH-HHHHHHHHHHHhcCCeEE-EEC-CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCE
Q 029986 17 GLRVLVVDDDP-IWLRILEKMLRKCLYEVT-KCN-RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~-~~~~~l~~~L~~~~~~v~-~~~-~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~i 93 (184)
+.+++|+.+.+ ...+.+..+....+-.+. ... ..++..+++.. .|++++-.. .++-|..+++.+. ..+||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~~~~~lEAma--~G~Pv 392 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSR-FEPCGLTQLYALR--YGCIP 392 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECcc-cCCCCHHHHHHHH--CCCCE
Confidence 56777777654 356667766666543333 222 33333455542 588887554 3444556666663 35788
Q ss_pred EEEEccCChHHHHHHHHcC---------CCceEeCCCCHHHHHHHHHHHH
Q 029986 94 IMMSVDGCTQDVMKGVTHG---------ACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~g---------a~~~l~kP~~~~~l~~~l~~~~ 134 (184)
|... .....+.+..| ..+++..|.+.++|.+.+..++
T Consensus 393 I~s~----~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 393 VVAR----TGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp EEES----SHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred EEeC----CCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 7642 24455666777 7899999999999999999887
No 189
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=66.71 E-value=32 Score=24.51 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=48.8
Q ss_pred CCeE-EEECCHHHHHHHHHhcCCCccEEEEeCC-C----CC----CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHH
Q 029986 41 LYEV-TKCNRAEIALDMLRMSKNGYDIVISDVH-M----PD----MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVT 110 (184)
Q Consensus 41 ~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~-l----~~----~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~ 110 (184)
+..+ ....+.+++..... .+.|+|.+... . .+ ..+++.+++++...++||+....-.+.+.+..+++
T Consensus 119 ~~~v~~~~~t~~e~~~~~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~ 195 (223)
T 1y0e_A 119 NVEIMADIATVEEAKNAAR---LGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMD 195 (223)
T ss_dssp TSEEEEECSSHHHHHHHHH---TTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHH
T ss_pred CceEEecCCCHHHHHHHHH---cCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHH
Confidence 4433 35667777766543 44787765321 0 11 12356777776545788888776668899999999
Q ss_pred cCCCceEe
Q 029986 111 HGACNYLL 118 (184)
Q Consensus 111 ~ga~~~l~ 118 (184)
.||+.++.
T Consensus 196 ~Gad~v~v 203 (223)
T 1y0e_A 196 LGVHCSVV 203 (223)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 99998875
No 190
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=66.31 E-value=33 Score=24.62 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=45.2
Q ss_pred CCeEEEEe------CCHHHHHHHHHHHHhcCCeEEEE----CCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhc
Q 029986 17 GLRVLVVD------DDPIWLRILEKMLRKCLYEVTKC----NRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG 86 (184)
Q Consensus 17 ~~~Ilivd------d~~~~~~~l~~~L~~~~~~v~~~----~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~ 86 (184)
+-+|++++ +.......+.+.|+..|+++... .+.++..+.+.. .|.|++ |+++-+.+.+.++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 45899997 33356777889999999998877 477777677652 588887 6777777666653
No 191
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=65.87 E-value=29 Score=28.56 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 50 AEIALDMLRMSKNGYDIVISDVHMPDMD-GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 50 ~~~~~~~l~~~~~~~dlvilD~~l~~~~-g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.+.+..++. .++|+|.+|...+... ..++++.+++. ++.||++ ..-.+.+.+..+.++||+...+
T Consensus 233 ~~~a~~l~~---aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 233 EERVKALVE---AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHH---TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh---ccCceEEeccccccchHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 344444443 4699999998876543 35678888644 5778776 3445678889999999997775
No 192
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=65.65 E-value=16 Score=28.12 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCCceEeCCCC--HHHHHHHHHHHH
Q 029986 103 QDVMKGVTHGACNYLLKPIR--IKELRNIWQHVA 134 (184)
Q Consensus 103 ~~~~~a~~~ga~~~l~kP~~--~~~l~~~l~~~~ 134 (184)
+.+..++++|.+=|+-||+. .++..+.+..+.
T Consensus 82 ~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 115 (337)
T 3ip3_A 82 KILLEALERKIHAFVEKPIATTFEDLEKIRSVYQ 115 (337)
T ss_dssp HHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 44556666666666666663 335544444443
No 193
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=65.25 E-value=34 Score=26.24 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=60.9
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhc-CCeEEE-EC-CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCC
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKC-LYEVTK-CN-RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMD 90 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~-~~~v~~-~~-~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~ 90 (184)
+...+||.||.--..-+......+... ++++.. +. +.+.+.+... +.+..-++-| --++++ .+.
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~--~~g~~~~y~d-------~~ell~----~~~ 86 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMAD--RFSVPHAFGS-------YEEMLA----SDV 86 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHH--HHTCSEEESS-------HHHHHH----CSS
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH--HcCCCeeeCC-------HHHHhc----CCC
Confidence 344679999998776665555556554 566553 33 3333443333 1111112222 222222 345
Q ss_pred CCEEEEEccCC--hHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHc
Q 029986 91 LPVIMMSVDGC--TQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQ 135 (184)
Q Consensus 91 ~~iIi~~~~~~--~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~ 135 (184)
+-+|+++++.. .+.+..|+++|-.=|+-||+ +.++..+.+..+.+
T Consensus 87 iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 135 (350)
T 4had_A 87 IDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDR 135 (350)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHH
T ss_pred CCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHH
Confidence 55666654433 46788999999999999998 45566666665544
No 194
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=65.20 E-value=47 Score=25.93 Aligned_cols=75 Identities=19% Similarity=0.069 Sum_probs=51.2
Q ss_pred cCCeE-EEECCHHHHHHHHHhcCCCccEEEEeCCC-----CC-----------CCHHHHHHHhcccCCCCEEEEEccCCh
Q 029986 40 CLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHM-----PD-----------MDGFKLHEQVGLEMDLPVIMMSVDGCT 102 (184)
Q Consensus 40 ~~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l-----~~-----------~~g~~l~~~l~~~~~~~iIi~~~~~~~ 102 (184)
.|..+ ..+.+.+++..... ..+|.|+++-.- .. ...+++++.++...++|||....-.+.
T Consensus 144 ~g~~v~~~v~t~~~a~~a~~---~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~ 220 (369)
T 3bw2_A 144 AGTLTLVTATTPEEARAVEA---AGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRG 220 (369)
T ss_dssp TTCEEEEEESSHHHHHHHHH---TTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSH
T ss_pred CCCeEEEECCCHHHHHHHHH---cCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCH
Confidence 45433 35677777665543 458999995421 10 234788888865567899887666678
Q ss_pred HHHHHHHHcCCCceE
Q 029986 103 QDVMKGVTHGACNYL 117 (184)
Q Consensus 103 ~~~~~a~~~ga~~~l 117 (184)
+.+..++..||+...
T Consensus 221 ~~~~~~l~~GAd~V~ 235 (369)
T 3bw2_A 221 GQIAAVLAAGADAAQ 235 (369)
T ss_dssp HHHHHHHHTTCSEEE
T ss_pred HHHHHHHHcCCCEEE
Confidence 899999999998765
No 195
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=64.97 E-value=17 Score=26.15 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=44.7
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcCCe---EE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHh
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYE---VT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~~~---v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
.+++.+|..+|-++...+..+..++..|.. +. ...+..+.+..+. ...+|+||+|.... +..++++.+
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~--~~~fD~V~~d~~~~--~~~~~l~~~ 149 (221)
T 3dr5_A 78 LADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA--NDSYQLVFGQVSPM--DLKALVDAA 149 (221)
T ss_dssp SCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC--TTCEEEEEECCCTT--THHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc--CCCcCeEEEcCcHH--HHHHHHHHH
Confidence 445668999999999999999999887654 44 3445544433221 35699999997533 333445544
No 196
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=64.67 E-value=35 Score=24.20 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=69.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEe----------CCCC----CCCHHH
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISD----------VHMP----DMDGFK 80 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD----------~~l~----~~~g~~ 80 (184)
...+|+++-..+...+.........+.++. ...+.++++...+....++|++|.- +..| ..+|++
T Consensus 3 ~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~D 82 (196)
T 2q5c_A 3 LSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKSVSIPSISIKVTRFD 82 (196)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHH
T ss_pred CCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEECChHHHHHHHhCCCCEEEEcCCHhH
Confidence 345899999999998888887776555543 4567787887765323568888832 1122 356777
Q ss_pred HHHHhc--ccCCCCEEEEEccCCh---HHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCC
Q 029986 81 LHEQVG--LEMDLPVIMMSVDGCT---QDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 81 l~~~l~--~~~~~~iIi~~~~~~~---~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
+++.+. .....+|-+++-.... ....+.++....-|. .-+.+++...+..+.+.+
T Consensus 83 il~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~--~~~~~e~~~~i~~l~~~G 142 (196)
T 2q5c_A 83 TMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFL--FSSEDEITTLISKVKTEN 142 (196)
T ss_dssp HHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEE--ECSGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEE--eCCHHHHHHHHHHHHHCC
Confidence 777662 1122344444332222 333344443332222 234567777787776643
No 197
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=64.54 E-value=4.9 Score=28.69 Aligned_cols=57 Identities=7% Similarity=-0.073 Sum_probs=28.9
Q ss_pred CHHHHHHHhccc-CCCCEEEEEc-cCChHH-HHHHHHcCCCceEeCCCCH-HHHHHHHHHH
Q 029986 77 DGFKLHEQVGLE-MDLPVIMMSV-DGCTQD-VMKGVTHGACNYLLKPIRI-KELRNIWQHV 133 (184)
Q Consensus 77 ~g~~l~~~l~~~-~~~~iIi~~~-~~~~~~-~~~a~~~ga~~~l~kP~~~-~~l~~~l~~~ 133 (184)
.|.++++.+++. ++.|+.+-.. ...... +..+.++|++..+...... +.+...++.+
T Consensus 39 ~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~ 99 (211)
T 3f4w_A 39 EGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAA 99 (211)
T ss_dssp HTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHH
Confidence 345667777544 4566532111 112233 6677778887766654432 3334444433
No 198
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=64.53 E-value=18 Score=23.01 Aligned_cols=77 Identities=13% Similarity=0.239 Sum_probs=44.2
Q ss_pred CCCCeEEEEeCC----HHHHHHHHHHHHhcCCe--EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc
Q 029986 15 PAGLRVLVVDDD----PIWLRILEKMLRKCLYE--VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE 88 (184)
Q Consensus 15 ~~~~~Ilivdd~----~~~~~~l~~~L~~~~~~--v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~ 88 (184)
|+.|+|+++-+. ......+++.+...|++ +..++ ..+....+ ..+|+||+-..+... ++-.+.....
T Consensus 2 ~~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~-~~~~~~~~----~~~D~Ii~t~~l~~~--~~~~~~~~~~ 74 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIA-ETRLSEVV----DRFDVVLLAPQSRFN--KKRLEEITKP 74 (109)
T ss_dssp CCCEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEEC-STTHHHHT----TTCSEEEECSCCSSH--HHHHHHHHHH
T ss_pred CCceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEec-HHHHHhhc----CCCCEEEECCccHHH--HHHHHHHhcc
Confidence 455788877643 26677788888777764 44333 23333322 348999998766543 2222222122
Q ss_pred CCCCEEEEEc
Q 029986 89 MDLPVIMMSV 98 (184)
Q Consensus 89 ~~~~iIi~~~ 98 (184)
.+.|++.+..
T Consensus 75 ~~~pv~~I~~ 84 (109)
T 2l2q_A 75 KGIPIEIINT 84 (109)
T ss_dssp HTCCEEECCH
T ss_pred cCCCEEEECh
Confidence 3678887753
No 199
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=63.85 E-value=46 Score=25.35 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=47.9
Q ss_pred cC-CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC--CH----------HHHHHHh----c-ccCCCCEEEEE-ccC
Q 029986 40 CL-YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM--DG----------FKLHEQV----G-LEMDLPVIMMS-VDG 100 (184)
Q Consensus 40 ~~-~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~--~g----------~~l~~~l----~-~~~~~~iIi~~-~~~ 100 (184)
.| +++..+.+.+++..+.. .+||+|.+..-+..+ -| .+.++.+ + .++++.++.-. .-.
T Consensus 162 ~gL~Ti~~v~~~eeA~amA~---agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIs 238 (286)
T 2p10_A 162 LDLLTTPYVFSPEDAVAMAK---AGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIA 238 (286)
T ss_dssp TTCEECCEECSHHHHHHHHH---HTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCC
T ss_pred CCCeEEEecCCHHHHHHHHH---cCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCC
Confidence 35 45667888999988865 459999998765422 12 2233333 1 12444333333 235
Q ss_pred ChHHHHHHHHc--CCCceEeC
Q 029986 101 CTQDVMKGVTH--GACNYLLK 119 (184)
Q Consensus 101 ~~~~~~~a~~~--ga~~~l~k 119 (184)
+++.+..+++. |+++|+.-
T Consensus 239 tpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 239 NPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp SHHHHHHHHHHCTTCCEEEES
T ss_pred CHHHHHHHHhcCCCccEEEee
Confidence 68899999999 99999853
No 200
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=63.84 E-value=9.7 Score=28.19 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCCccEEEEeCCCC--CCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCC
Q 029986 52 IALDMLRMSKNGYDIVISDVHMP--DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120 (184)
Q Consensus 52 ~~~~~l~~~~~~~dlvilD~~l~--~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP 120 (184)
+.++.+. +.+.|+|.+-.... -.+-+++++.++. .++|+++++...+. +..|++++|.--
T Consensus 24 ~~~~~l~--~~GaD~IelG~S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n~------i~~gvDg~iipd 85 (234)
T 2f6u_A 24 EIIKAVA--DSGTDAVMISGTQNVTYEKARTLIEKVSQ-YGLPIVVEPSDPSN------VVYDVDYLFVPT 85 (234)
T ss_dssp HHHHHHH--TTTCSEEEECCCTTCCHHHHHHHHHHHTT-SCCCEEECCSSCCC------CCCCSSEEEEEE
T ss_pred HHHHHHH--HcCCCEEEECCCCCCCHHHHHHHHHHhcC-CCCCEEEecCCcch------hhcCCCEEEEcc
Confidence 3344443 45689999877422 1224677888876 78999998765322 277999998653
No 201
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=63.55 E-value=40 Score=28.46 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=61.5
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCCeEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHhcc
Q 029986 17 GLRVLVV----DDDPIWLRILEKMLRKCLYEVTKCN---RAEIALDMLRMSKNGYDIVISDVHMPDM--DGFKLHEQVGL 87 (184)
Q Consensus 17 ~~~Iliv----dd~~~~~~~l~~~L~~~~~~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~--~g~~l~~~l~~ 87 (184)
.-+|++. |-+..-...+..+|+..||+|.... ..++.++.+. ...||+|.+...+... .--++++.++.
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~--~~~~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAK--EVNADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHH--HHTCSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4467777 5667777888899999999987543 4677777766 3459999998866431 11234555643
Q ss_pred -cCCCCEEEEEccCChHHHHHH---HHcCCCceEe
Q 029986 88 -EMDLPVIMMSVDGCTQDVMKG---VTHGACNYLL 118 (184)
Q Consensus 88 -~~~~~iIi~~~~~~~~~~~~a---~~~ga~~~l~ 118 (184)
..++||++=....+..+.... .-.|++.|..
T Consensus 176 ~g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~ 210 (579)
T 3bul_A 176 QGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQ 210 (579)
T ss_dssp TTCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECC
T ss_pred cCCCCeEEEEccccchhhhhhhhhhcccCCeEEEC
Confidence 346777655443444433111 1128887753
No 202
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=63.49 E-value=20 Score=25.99 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCCccEEE-EeCCCCC---CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHc---CCCceE------
Q 029986 51 EIALDMLRMSKNGYDIVI-SDVHMPD---MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTH---GACNYL------ 117 (184)
Q Consensus 51 ~~~~~~l~~~~~~~dlvi-lD~~l~~---~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~---ga~~~l------ 117 (184)
.+..+.+. +.+++.|+ .+....+ +-.++.+++++...++|||.-..-.+.+.+.++++. |+++++
T Consensus 152 ~e~~~~~~--~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~ 229 (244)
T 2y88_A 152 WDVLERLD--SEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALY 229 (244)
T ss_dssp HHHHHHHH--HTTCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHH
T ss_pred HHHHHHHH--hCCCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHH
Confidence 44444443 34567655 4544322 224678888865567899888776667888899988 999876
Q ss_pred eCCCCHHHHHH
Q 029986 118 LKPIRIKELRN 128 (184)
Q Consensus 118 ~kP~~~~~l~~ 128 (184)
..|....++.+
T Consensus 230 ~~~~~~~~~~~ 240 (244)
T 2y88_A 230 ARRFTLPQALA 240 (244)
T ss_dssp TTSSCHHHHHH
T ss_pred CCCcCHHHHHH
Confidence 34666555544
No 203
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=63.37 E-value=46 Score=25.12 Aligned_cols=86 Identities=12% Similarity=0.057 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCe-EEEECCHHHHHHHHHhcCCCccEEEEeCCC-CCC-CHHHHHHHhc-ccC-CCCEEEEEccCChHH
Q 029986 30 LRILEKMLRKCLYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHM-PDM-DGFKLHEQVG-LEM-DLPVIMMSVDGCTQD 104 (184)
Q Consensus 30 ~~~l~~~L~~~~~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l-~~~-~g~~l~~~l~-~~~-~~~iIi~~~~~~~~~ 104 (184)
...+.......|.. +..+++.+++...+ ..++|+|=+...- ... -.++....+. ..+ +.|+|.-+.-.+.+.
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~---~~ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~~~~vIaesGI~t~ed 234 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERAL---KLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESGIFTHED 234 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHT---TSCCSEEEEECBCTTTCCBCTHHHHHHHHHSCTTSEEEEESSCCSHHH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHH---hcCCCEEEECCCCCccCCCChHHHHHHHHhCCCCCcEEEECCCCCHHH
Confidence 33444445566775 45788888876665 3568887665322 111 1134444442 223 567777777778899
Q ss_pred HHHHHHcCCCceEe
Q 029986 105 VMKGVTHGACNYLL 118 (184)
Q Consensus 105 ~~~a~~~ga~~~l~ 118 (184)
+..+.++|++++++
T Consensus 235 v~~l~~~Ga~gvLV 248 (272)
T 3tsm_A 235 CLRLEKSGIGTFLI 248 (272)
T ss_dssp HHHHHTTTCCEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999984
No 204
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=62.87 E-value=40 Score=24.23 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=43.4
Q ss_pred CHHHHHHHHHhcCCCccEE-EEeCCCCCC---CHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 49 RAEIALDMLRMSKNGYDIV-ISDVHMPDM---DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlv-ilD~~l~~~---~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+..+..+.+. ..+.|.+ +.|...... ...++++.++...++|+++-..-.+.+.+..++++||+....
T Consensus 34 ~~~~~a~~~~--~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 34 DPVEMAVRYE--EEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp CHHHHHHHHH--HTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHH--HcCCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 4555555554 3456744 445433221 235677777655678988776666677888899999987764
No 205
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=62.69 E-value=8.4 Score=27.65 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 51 EIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 51 ~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
+...+.+. +..||++ . -||+.-- ++++++++..++|+|.=.--.+.+.+..++++||+..-+-
T Consensus 117 ~~~~~~i~--~~~PD~i--E-iLPGi~p-~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsTs 179 (192)
T 3kts_A 117 NKGVALIQ--KVQPDCI--E-LLPGIIP-EQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTS 179 (192)
T ss_dssp HHHHHHHH--HHCCSEE--E-EECTTCH-HHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEEC
T ss_pred HHHHHHHh--hcCCCEE--E-ECCchhH-HHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEeC
Confidence 34566665 3458976 2 2466543 6888887667889887655677899999999999876543
No 206
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=62.58 E-value=50 Score=25.30 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=32.0
Q ss_pred CCCCEEEEEccC--ChHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHcC
Q 029986 89 MDLPVIMMSVDG--CTQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQQ 136 (184)
Q Consensus 89 ~~~~iIi~~~~~--~~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~~ 136 (184)
+.+-+++++... ..+.+..++++|..=|+-||+ +.++..+.+..+.+.
T Consensus 81 ~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 132 (340)
T 1zh8_A 81 GLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKS 132 (340)
T ss_dssp SCCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHC
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 345555554433 346777889999888889997 666777766666543
No 207
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=61.99 E-value=8 Score=29.02 Aligned_cols=55 Identities=16% Similarity=0.340 Sum_probs=36.5
Q ss_pred HHHHHHhcccCCCCEEEEEc------cCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 79 FKLHEQVGLEMDLPVIMMSV------DGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 79 ~~l~~~l~~~~~~~iIi~~~------~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
+++++.++. .+|+++++- +.-.....++.++|+++.+.--+..++.......+.+
T Consensus 79 ~~~~~~~r~--~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~ 139 (252)
T 3tha_A 79 FELLARIKT--KKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLIKECER 139 (252)
T ss_dssp HHHHHHCCC--SSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHH
T ss_pred HHHHHHHhc--CCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 445555543 378888753 2334567889999999999887777775555554433
No 208
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=61.91 E-value=11 Score=27.66 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=30.2
Q ss_pred HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 79 ~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
++.+++++...++|+++-..-...+.+..++.+||+.++.-
T Consensus 180 ~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 180 YDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 45677776545788877665555588888889999999853
No 209
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=61.60 E-value=55 Score=25.49 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc---C--CCCEEEEEccCChHHHHHHHHcCCCceEe-CCCCHH
Q 029986 51 EIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE---M--DLPVIMMSVDGCTQDVMKGVTHGACNYLL-KPIRIK 124 (184)
Q Consensus 51 ~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~---~--~~~iIi~~~~~~~~~~~~a~~~ga~~~l~-kP~~~~ 124 (184)
....+.+. ..++|.|++|+.-.-.+--.+...++.. . ..++++=....+...+..+++.|+++.++ |--+.+
T Consensus 53 p~~~e~a~--~~GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~sae 130 (339)
T 1izc_A 53 TFVTKVLA--ATKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETVE 130 (339)
T ss_dssp HHHHHHHH--HTCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCHH
T ss_pred HHHHHHHH--hCCCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCHH
Confidence 33344443 3569999999976555544444444321 1 15555555566678888999999987554 444678
Q ss_pred HHHHHHHHH
Q 029986 125 ELRNIWQHV 133 (184)
Q Consensus 125 ~l~~~l~~~ 133 (184)
++..+...+
T Consensus 131 e~~~~~~~~ 139 (339)
T 1izc_A 131 EVREFVKEM 139 (339)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 887776665
No 210
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=61.16 E-value=18 Score=26.47 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=35.7
Q ss_pred ccEEEEeCCCCCCCH-------HHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 64 YDIVISDVHMPDMDG-------FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 64 ~dlvilD~~l~~~~g-------~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+|.|++....|+..| ++-+++++.. .+.+| .+...-+.+....+.++||+.++.
T Consensus 135 ~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I-~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 135 IDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDI-EVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp CSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEE-EEESSCSTTTHHHHHHHTCCEEEE
T ss_pred CCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCE-EEeCCcCHHHHHHHHHcCCCEEEE
Confidence 688887776776655 3335555433 34444 444555678888999999998863
No 211
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=60.62 E-value=33 Score=23.71 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCeEE---EECCH-HHHHHHHH--hcCCCccEEEEeCCC
Q 029986 29 WLRILEKMLRKCLYEVT---KCNRA-EIALDMLR--MSKNGYDIVISDVHM 73 (184)
Q Consensus 29 ~~~~l~~~L~~~~~~v~---~~~~~-~~~~~~l~--~~~~~~dlvilD~~l 73 (184)
....|...|.+.|+++. .+.|. +...+.+. .....+|+||.--.+
T Consensus 41 ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred hHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 44578899999998765 34443 33333333 123458999986544
No 212
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=60.45 E-value=30 Score=22.13 Aligned_cols=76 Identities=25% Similarity=0.257 Sum_probs=48.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHh--cCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRM--SKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~--~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iI 94 (184)
.||+.++.| +...-. +.-.|.++..+++.+++.+.++. ....+.+|+++-.+.+. --+.+..++.....|+|
T Consensus 3 ~mkiaVIgD-~dtv~G----FrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~-i~~~i~~~~~~~~~P~I 76 (109)
T 2d00_A 3 PVRMAVIAD-PETAQG----FRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPD-PERAVERLMRGRDLPVL 76 (109)
T ss_dssp CCCEEEEEC-HHHHHH----HHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSC-HHHHHHHHTTCCCCCEE
T ss_pred ccEEEEEeC-HHHHHH----HHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHh-hHHHHHHHHhCCCCeEE
Confidence 468999999 433333 33457788888888877666642 23468999998877663 22345555434457776
Q ss_pred EEEc
Q 029986 95 MMSV 98 (184)
Q Consensus 95 i~~~ 98 (184)
+.-.
T Consensus 77 l~IP 80 (109)
T 2d00_A 77 LPIA 80 (109)
T ss_dssp EEES
T ss_pred EEEC
Confidence 6543
No 213
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=60.06 E-value=13 Score=27.59 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=35.2
Q ss_pred CCCccEEEEeCCCC--CCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCC
Q 029986 61 KNGYDIVISDVHMP--DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121 (184)
Q Consensus 61 ~~~~dlvilD~~l~--~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~ 121 (184)
+.+.|++.+-.... -.+.+++++.++. .++|+|+++...+ .+..|+++||+.-+
T Consensus 31 ~~GaD~ielG~S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n------~i~~G~dg~iiPdL 86 (240)
T 1viz_A 31 ESGTDAVIIGGSDGVTEDNVLRMMSKVRR-FLVPCVLEVSAIE------AIVPGFDLYFIPSV 86 (240)
T ss_dssp TSCCSEEEECC----CHHHHHHHHHHHTT-SSSCEEEECSCGG------GCCSCCSEEEEEEE
T ss_pred HcCCCEEEECCCCCCCHHHHHHHHHHhhC-cCCCEEEecCccc------cccCCCCEEEEccc
Confidence 45678888876311 1125778888877 7899999865422 22779999996533
No 214
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=59.39 E-value=55 Score=24.77 Aligned_cols=98 Identities=10% Similarity=0.066 Sum_probs=59.1
Q ss_pred HHHHHHhcCC-eEEE--ECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc--cCCCCEEEEEccCChHHHHH
Q 029986 33 LEKMLRKCLY-EVTK--CNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL--EMDLPVIMMSVDGCTQDVMK 107 (184)
Q Consensus 33 l~~~L~~~~~-~v~~--~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~--~~~~~iIi~~~~~~~~~~~~ 107 (184)
+++.|.. |. .+.. -.+.....+.+. ..++|.|++|++-...+--.+...++. ....++++=+...+...+..
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~--~~GaD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~ 106 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLA--GAGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQ 106 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHH--TSCCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHH--hCCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHH
Confidence 4555554 33 3332 223344444444 467999999997665555455554432 23455655556666778889
Q ss_pred HHHcCCCceEe-CCCCHHHHHHHHHHH
Q 029986 108 GVTHGACNYLL-KPIRIKELRNIWQHV 133 (184)
Q Consensus 108 a~~~ga~~~l~-kP~~~~~l~~~l~~~ 133 (184)
+++.|++..+. |--+.+++...+..+
T Consensus 107 ~ld~ga~~ImlP~V~saeea~~~~~~~ 133 (287)
T 2v5j_A 107 LLDVGTQTLLVPMVQNADEAREAVRAT 133 (287)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHHHT
T ss_pred HHhCCCCEEEeCCCCCHHHHHHHHHHh
Confidence 99999987654 334677877666654
No 215
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=59.15 E-value=48 Score=24.03 Aligned_cols=69 Identities=14% Similarity=0.104 Sum_probs=43.0
Q ss_pred CHHHHHHHHHhcCCCccEEE-EeCCCCCC---CHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 49 RAEIALDMLRMSKNGYDIVI-SDVHMPDM---DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvi-lD~~l~~~---~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
+..+..+.+. +.+.|.+- .|..-... ..+++++.++...++|+++-..-.+.+.+..+++.||+..+.-
T Consensus 31 d~~~~a~~~~--~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYS--EIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHH--HTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHH--HcCCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4444444444 34456544 44332211 1355667776656789988766677788999999999987753
No 216
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=59.05 E-value=60 Score=25.04 Aligned_cols=107 Identities=11% Similarity=0.069 Sum_probs=66.0
Q ss_pred CCeEEEEeCCHH-----HHHHHHHHHHhcCCe---------EEEEC--CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHH
Q 029986 17 GLRVLVVDDDPI-----WLRILEKMLRKCLYE---------VTKCN--RAEIALDMLRMSKNGYDIVISDVHMPDMDGFK 80 (184)
Q Consensus 17 ~~~Ilivdd~~~-----~~~~l~~~L~~~~~~---------v~~~~--~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~ 80 (184)
..+++|+.+.+. ....+....++.|.. +.... +.++..+++.. .|++++-.. .++-|..
T Consensus 215 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~-~E~~~~~ 289 (413)
T 3oy2_A 215 DAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSS-GEGFGLC 289 (413)
T ss_dssp TCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCS-CCSSCHH
T ss_pred CcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCC-cCCCCcH
Confidence 456666654432 235556655555543 32222 34566666652 588888443 3445666
Q ss_pred HHHHhcccCCCCEEEEEccCChHHHHHHHHcCCC---------------ce--EeCCCCHHHHHHHHHHHHc
Q 029986 81 LHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGAC---------------NY--LLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 81 l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~---------------~~--l~kP~~~~~l~~~l~~~~~ 135 (184)
+++.+. ..+|||... .....+.+..|.. ++ +..|.+.++|.+.+ .++.
T Consensus 290 ~lEAma--~G~PvI~s~----~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 290 SAEGAV--LGKPLIISA----VGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp HHHHHT--TTCCEEEEC----CHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred HHHHHH--cCCCEEEcC----CCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 777663 467887642 3344566666776 88 99999999999999 8865
No 217
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=59.05 E-value=65 Score=25.50 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhc-CCeEE--EECCHHHHHHHHHhcCCCccEEEEeCCC-----------CCCCHHHHHHHhcc---cCCC
Q 029986 29 WLRILEKMLRKC-LYEVT--KCNRAEIALDMLRMSKNGYDIVISDVHM-----------PDMDGFKLHEQVGL---EMDL 91 (184)
Q Consensus 29 ~~~~l~~~L~~~-~~~v~--~~~~~~~~~~~l~~~~~~~dlvilD~~l-----------~~~~g~~l~~~l~~---~~~~ 91 (184)
..+.++..-+.. +..+. ...+.+++..+. +.++|.|.+...- .+...++.+..+.. ..++
T Consensus 181 ~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~---~~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~i 257 (404)
T 1eep_A 181 IIELIKKIKTKYPNLDLIAGNIVTKEAALDLI---SVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNI 257 (404)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECSHHHHHHHH---TTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHH---hcCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCc
Confidence 343443333333 44444 466777666554 3568998882110 01223444554432 3468
Q ss_pred CEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 92 PVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 92 ~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
|||.-..-.+...+.+++..||+....
T Consensus 258 pVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 258 CIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp EEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred eEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 888777777789999999999998754
No 218
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=58.88 E-value=12 Score=27.76 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=35.8
Q ss_pred CCCccEEEEeCCCC--CCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 61 KNGYDIVISDVHMP--DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 61 ~~~~dlvilD~~l~--~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
..+.|.|++-.... ..+..++++.++. .++|++++... . +.+..|+|+|+.-
T Consensus 34 ~~GtDaI~vGgs~gvt~~~~~~~v~~ik~-~~~Piil~p~~--~----~~~~~gaD~il~p 87 (235)
T 3w01_A 34 MSQTDAIMIGGTDDVTEDNVIHLMSKIRR-YPLPLVLEISN--I----ESVMPGFDFYFVP 87 (235)
T ss_dssp TSSCSEEEECCSSCCCHHHHHHHHHHHTT-SCSCEEEECCC--S----TTCCTTCSEEEEE
T ss_pred HcCCCEEEECCcCCcCHHHHHHHHHHhcC-cCCCEEEecCC--H----HHhhcCCCEEEEc
Confidence 45679999976532 2345677888877 78999988754 2 2235699999854
No 219
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=58.76 E-value=48 Score=23.83 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=48.9
Q ss_pred CCeEE-EECCHHHHHHHHHhcCCCccEE---EEeCCCC----CCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcC
Q 029986 41 LYEVT-KCNRAEIALDMLRMSKNGYDIV---ISDVHMP----DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHG 112 (184)
Q Consensus 41 ~~~v~-~~~~~~~~~~~l~~~~~~~dlv---ilD~~l~----~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~g 112 (184)
+..+. .+.+.+++..... .+.|.| +....-. ....++++++++.. ++||+....-.+.+.+..++++|
T Consensus 133 ~~~v~~~~~t~~ea~~a~~---~Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI~s~~~~~~~~~~G 208 (234)
T 1yxy_A 133 NQLLMADISTFDEGLVAHQ---AGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEEAKKINDLG 208 (234)
T ss_dssp TCEEEEECSSHHHHHHHHH---TTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHTTC
T ss_pred CCeEEEeCCCHHHHHHHHH---cCCCEEeeeccccCCCCcCCCCCCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCC
Confidence 44433 5567777766654 457887 3322111 12246778888655 78998877666689999999999
Q ss_pred CCceEe
Q 029986 113 ACNYLL 118 (184)
Q Consensus 113 a~~~l~ 118 (184)
|+.++.
T Consensus 209 ad~v~v 214 (234)
T 1yxy_A 209 VAGIVV 214 (234)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 998864
No 220
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=58.36 E-value=70 Score=25.59 Aligned_cols=113 Identities=9% Similarity=0.004 Sum_probs=57.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEE-EECC-HHHHHHHHHh--cCCCccEEEEeCCCCCCCHHHHHHHhcccCCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVT-KCNR-AEIALDMLRM--SKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLP 92 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~~-~~~~~~~l~~--~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~ 92 (184)
.+||.||.--..-...+..+....++++. .+.. .+.+.+.... ....++.-..+- ...+ .+.+-..+++-
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~--~~~~----~~~ll~~~~vD 93 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGN--GNDD----YKNMLKDKNID 93 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECS--STTT----HHHHTTCTTCC
T ss_pred CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceecc--CCCC----HHHHhcCCCCC
Confidence 47899998776655544433333366654 3332 2222222110 011122222210 0112 22221234455
Q ss_pred EEEEEccC--ChHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHc
Q 029986 93 VIMMSVDG--CTQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQ 135 (184)
Q Consensus 93 iIi~~~~~--~~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~ 135 (184)
+|+++... ..+.+..++++|.+=|+-||+ +.++..+.+..+.+
T Consensus 94 ~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~ 140 (444)
T 2ixa_A 94 AVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQ 140 (444)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 55555433 346777899999988899997 46666666665544
No 221
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=58.12 E-value=29 Score=25.35 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=45.2
Q ss_pred CHHHHHHHHHhcCCCccEEE-EeCCCC---CCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 49 RAEIALDMLRMSKNGYDIVI-SDVHMP---DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvi-lD~~l~---~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+..+..+.+. +.+.|.+. .|..-. ....+++++.++...++|+++-..-.+.+.+..++..||+..+.
T Consensus 36 ~~~~~a~~~~--~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVE--KRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHH--HTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHH--HcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 3444444444 24466554 465322 22336788888766789999887777788899999999887663
No 222
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=57.67 E-value=80 Score=26.05 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=58.2
Q ss_pred CeEEEEeC----CHHHHHHHHHHHHhcC-CeE--EEECCHHHHHHHHHhcCCCccEEEEeCCCCC-----------CCHH
Q 029986 18 LRVLVVDD----DPIWLRILEKMLRKCL-YEV--TKCNRAEIALDMLRMSKNGYDIVISDVHMPD-----------MDGF 79 (184)
Q Consensus 18 ~~Ilivdd----~~~~~~~l~~~L~~~~-~~v--~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-----------~~g~ 79 (184)
..+++++. .....+.++.+-+..+ ..+ ..+.+.+.+..+.. .+.|.|.+...-.. ...+
T Consensus 269 vd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~---aGad~i~vg~g~gsi~~~~~~~g~g~p~~ 345 (511)
T 3usb_A 269 VDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIE---AGANVVKVGIGPGSICTTRVVAGVGVPQL 345 (511)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH---HTCSEEEECSSCSTTCCHHHHHCCCCCHH
T ss_pred cceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHH---hCCCEEEECCCCccccccccccCCCCCcH
Confidence 45666652 2233334444333332 232 35677777777665 45788887442211 2234
Q ss_pred HHHHHhc---ccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 80 KLHEQVG---LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 80 ~l~~~l~---~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
..+..+. ....+|||.-..-.+...+.+++.+||+....
T Consensus 346 ~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 346 TAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp HHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 4444442 22368998877777899999999999998864
No 223
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=57.45 E-value=57 Score=24.31 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc--cCCCCEEEEEccCChHHHHHHHHcCCCceEe-CCCCHHHH
Q 029986 50 AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL--EMDLPVIMMSVDGCTQDVMKGVTHGACNYLL-KPIRIKEL 126 (184)
Q Consensus 50 ~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~--~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~-kP~~~~~l 126 (184)
.....+.+. ..++|.+++|+.-.-.+.-.+...++. ....++++=....++..+..+++.|+++.+. |--+.+++
T Consensus 28 ~p~~~e~a~--~~GaD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~~l~~g~~~I~~P~V~s~ee~ 105 (267)
T 2vws_A 28 TAYMAEIAA--TSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQA 105 (267)
T ss_dssp CHHHHHHHH--TTCCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHHHHTTCCEEEECCCCSHHHH
T ss_pred CHHHHHHHH--hCCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCCHHHH
Confidence 334444444 467999999997665555455554432 2245555555556677888999999987654 44467787
Q ss_pred HHHHHHH
Q 029986 127 RNIWQHV 133 (184)
Q Consensus 127 ~~~l~~~ 133 (184)
...+..+
T Consensus 106 ~~~~~~~ 112 (267)
T 2vws_A 106 RQVVSAT 112 (267)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7766654
No 224
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=57.21 E-value=62 Score=24.62 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=29.5
Q ss_pred CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 89 MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 89 ~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
..+|+|......... +..+.| .+++..| +.++|.+.+..++.
T Consensus 300 ~G~PvI~~~~~~~~~---e~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 300 LGKPVLVMRDTTERP---EAVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp GTCCEEEESSCCSCH---HHHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred cCCCEEEccCCCCcc---hhhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 468888663312222 335668 8899877 89999999988875
No 225
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=57.01 E-value=52 Score=23.69 Aligned_cols=70 Identities=26% Similarity=0.266 Sum_probs=46.4
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcCCe--E-EEECCHHHHHHHHHhc---CCCccEEEEeCCCCCCCHHHHHHHh
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYE--V-TKCNRAEIALDMLRMS---KNGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~~~--v-~~~~~~~~~~~~l~~~---~~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
.|++.+|..+|-++...+..+..+...|+. + ....+..+.+..+... ...+|+||+|... .+-.++++.+
T Consensus 92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~--~~~~~~l~~~ 167 (237)
T 3c3y_A 92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADK--PNYIKYHERL 167 (237)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCG--GGHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCch--HHHHHHHHHH
Confidence 344568999999999999999888877652 3 3456776665544211 2469999999642 2334445544
No 226
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=56.88 E-value=35 Score=26.83 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 51 EIALDMLRMSKNGYDIVISDVHMPDMD-GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 51 ~~~~~~l~~~~~~~dlvilD~~l~~~~-g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.+..+.+. +..+|+|.+|....... ..+.++.++...+.|+++ ..-.+.+.+..+.++|++...+
T Consensus 107 ~e~a~~l~--eaGad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Viv-g~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLV--EAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIV-GNVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHH--HTTCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHH--HcCcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEE-ccCCCHHHHHHHHHcCcCEEEE
Confidence 34444443 34589999887654332 246677775544677765 2335678899999999987765
No 227
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=56.71 E-value=14 Score=27.06 Aligned_cols=86 Identities=20% Similarity=0.173 Sum_probs=51.5
Q ss_pred CHHHHHHHHHhcCCCccEEEEeC---CC-CCC-CHHHHHHHhccc--CCCCEEE-EEccCChHHHHHHHHcCCCceEeCC
Q 029986 49 RAEIALDMLRMSKNGYDIVISDV---HM-PDM-DGFKLHEQVGLE--MDLPVIM-MSVDGCTQDVMKGVTHGACNYLLKP 120 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~---~l-~~~-~g~~l~~~l~~~--~~~~iIi-~~~~~~~~~~~~a~~~ga~~~l~kP 120 (184)
+..+.++.+. +.+.|.+-+|+ +. |.. -|.++++.++.. ++.|+-+ +-...-..+...+.++||+......
T Consensus 18 ~l~~~i~~l~--~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~~aGad~itvH~ 95 (228)
T 3ovp_A 18 NLGAECLRML--DSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHL 95 (228)
T ss_dssp GHHHHHHHHH--HTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHHHHTCSEEEEEG
T ss_pred hHHHHHHHHH--HcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHHHcCCCEEEEcc
Confidence 4556666665 23455555554 32 222 378889999755 5666543 1122224577788999999877766
Q ss_pred CCHHHHHHHHHHHHcC
Q 029986 121 IRIKELRNIWQHVAQQ 136 (184)
Q Consensus 121 ~~~~~l~~~l~~~~~~ 136 (184)
.....+.+.++.+.+.
T Consensus 96 Ea~~~~~~~i~~i~~~ 111 (228)
T 3ovp_A 96 EATENPGALIKDIREN 111 (228)
T ss_dssp GGCSCHHHHHHHHHHT
T ss_pred CCchhHHHHHHHHHHc
Confidence 5444566666666543
No 228
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=56.70 E-value=12 Score=26.54 Aligned_cols=56 Identities=13% Similarity=0.018 Sum_probs=31.5
Q ss_pred HHHHHHHhccc-CCCCEEE--EEccCChHHHHHHHHcCCCceEeCCCCH-HHHHHHHHHH
Q 029986 78 GFKLHEQVGLE-MDLPVIM--MSVDGCTQDVMKGVTHGACNYLLKPIRI-KELRNIWQHV 133 (184)
Q Consensus 78 g~~l~~~l~~~-~~~~iIi--~~~~~~~~~~~~a~~~ga~~~l~kP~~~-~~l~~~l~~~ 133 (184)
|.++++.+++. ++.|+++ ....-...+...+.++||+.....+... +.+...++.+
T Consensus 40 g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~ 99 (207)
T 3ajx_A 40 GLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSADDSTIAGAVKAA 99 (207)
T ss_dssp CTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHH
Confidence 44567777544 3567664 2221012346778888988777666644 4454444444
No 229
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=56.42 E-value=49 Score=23.22 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=47.2
Q ss_pred ccCCCCCeEEEEeCCHHHHHHHHHHHHhcCC---eEEEECCHHHHHHHHHhcC-CCccEEEEeCCCCCCCHHHHHHHh
Q 029986 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLY---EVTKCNRAEIALDMLRMSK-NGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 12 ~~~~~~~~Ilivdd~~~~~~~l~~~L~~~~~---~v~~~~~~~~~~~~l~~~~-~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
...|++.+|..+|-++...+..+..+...|. .-....+..+.+..+.... ..+|+|++|...+ .-..+++.+
T Consensus 78 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~ 153 (223)
T 3duw_A 78 RGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWA 153 (223)
T ss_dssp TTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHH
Confidence 3444456899999999999888888887654 2335667766665543221 4599999987522 333455554
No 230
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=56.13 E-value=63 Score=24.42 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=38.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 64 YDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 64 ~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
.|++++.. |.-+++.+. ..+|+|....... ..+..+.| .+++..+ +.++|.+.+..++..
T Consensus 283 ad~~v~~s------g~~~lEA~a--~G~Pvi~~~~~~~---~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~~ 342 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPS--LGVPVLVLRDTTE---RPEGIEAG-TLKLAGT-DEETIFSLADELLSD 342 (375)
T ss_dssp CSEEEECC------HHHHHHHHH--HTCCEEECSSCCS---CHHHHHTT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred CcEEEECC------CChHHHHHh--cCCCEEEecCCCC---CceeecCC-ceEEcCC-CHHHHHHHHHHHHhC
Confidence 57777653 433445442 3678886522122 23456778 8888876 999999999988763
No 231
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=55.83 E-value=66 Score=24.57 Aligned_cols=57 Identities=11% Similarity=0.033 Sum_probs=37.1
Q ss_pred HHHHHHhcccCCCCEEEEE--ccCChHHHHHHHHcCCCceEe-----CCCCHHHHHHHHHHHHc
Q 029986 79 FKLHEQVGLEMDLPVIMMS--VDGCTQDVMKGVTHGACNYLL-----KPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 79 ~~l~~~l~~~~~~~iIi~~--~~~~~~~~~~a~~~ga~~~l~-----kP~~~~~l~~~l~~~~~ 135 (184)
+++++++....++|+++++ .-.+.+.+..++.+||++++. +.-++....+.+.....
T Consensus 196 ~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~ 259 (297)
T 4adt_A 196 IDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVS 259 (297)
T ss_dssp HHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHH
Confidence 4566777555567887543 334688899999999999974 44455555554444444
No 232
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=55.36 E-value=69 Score=24.60 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=53.6
Q ss_pred EEEEeCCHHHHHHHHHHHHh----cC-C-eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCE
Q 029986 20 VLVVDDDPIWLRILEKMLRK----CL-Y-EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPV 93 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~----~~-~-~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~i 93 (184)
|+|=|.+-...-.+...++. .. . ....+.+.+++.+.+. .++|+|.+|-. +--++.+.++....-..
T Consensus 181 vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~---aGaDiImLDn~----s~~~l~~av~~~~~~v~ 253 (300)
T 3l0g_A 181 VLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLS---NNVDMILLDNM----SISEIKKAVDIVNGKSV 253 (300)
T ss_dssp EEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHH---TTCSEEEEESC----CHHHHHHHHHHHTTSSE
T ss_pred EEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHH---cCCCEEEECCC----CHHHHHHHHHhhcCceE
Confidence 66666554444334443322 12 1 2347888999999886 35899999953 22222222221122345
Q ss_pred EEEEccCChHHHHHHHHcCCCce
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~ 116 (184)
+..+..-+.+.+....+.|+|.+
T Consensus 254 leaSGGIt~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 254 LEVSGCVNIRNVRNIALTGVDYI 276 (300)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEE
Confidence 66677777888888889999844
No 233
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=55.35 E-value=48 Score=27.40 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=40.7
Q ss_pred CCccEEEEeCCCCCCCH-HHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 62 NGYDIVISDVHMPDMDG-FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 62 ~~~dlvilD~~l~~~~g-~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.++|+|.+|...+...+ ++++++++.. ++.|+++- .-.+.+.+..+.++|++....
T Consensus 267 aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g-~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 267 ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAG-NVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred hccceEEecccccchhhhhhHHHHHHHhCCCceEEee-eeccHHHHHHHHHhCCCEEEE
Confidence 56899999987665444 4678888644 45676653 445678899999999997764
No 234
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=55.33 E-value=13 Score=28.18 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=47.1
Q ss_pred CCCeEEEEeC-----CHHHHHHHHHHHHhcC-CeEEEECCHH-----HHHHHHHhcCCCccEEEEeCCCCCCCHH---HH
Q 029986 16 AGLRVLVVDD-----DPIWLRILEKMLRKCL-YEVTKCNRAE-----IALDMLRMSKNGYDIVISDVHMPDMDGF---KL 81 (184)
Q Consensus 16 ~~~~Ilivdd-----~~~~~~~l~~~L~~~~-~~v~~~~~~~-----~~~~~l~~~~~~~dlvilD~~l~~~~g~---~l 81 (184)
+.+||||+.. -+.....|..+|++.| ++|....+.. +.+. ..-..+|+||++......+.. .+
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~---~~L~~~D~vV~~~~~~~l~~~~~~~l 79 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV---LDFSPYQLVVLDYNGDSWPEETNRRF 79 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC---CCCTTCSEEEECCCSSCCCHHHHHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh---hhhhcCCEEEEeCCCCcCCHHHHHHH
Confidence 4578999986 3667788999999887 8888776531 1111 112349999987754433321 12
Q ss_pred HHHhcccCCCCEEEEE
Q 029986 82 HEQVGLEMDLPVIMMS 97 (184)
Q Consensus 82 ~~~l~~~~~~~iIi~~ 97 (184)
.+.++ ....++.+-
T Consensus 80 ~~yV~--~Ggglv~~H 93 (281)
T 4e5v_A 80 LEYVQ--NGGGVVIYH 93 (281)
T ss_dssp HHHHH--TTCEEEEEG
T ss_pred HHHHH--cCCCEEEEe
Confidence 33332 356777774
No 235
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=55.26 E-value=71 Score=24.75 Aligned_cols=91 Identities=11% Similarity=0.033 Sum_probs=54.9
Q ss_pred EEEEeCCHHHHHHHHHHHHh----cCC--eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCE
Q 029986 20 VLVVDDDPIWLRILEKMLRK----CLY--EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPV 93 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~----~~~--~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~i 93 (184)
|+|-|.+-...-.+...++. .+. ....+.+.+++.+.+. .++|+|.+|-. +.-++.+..+....-..
T Consensus 205 vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~---aGaD~I~LDn~----~~~~l~~av~~l~~~v~ 277 (320)
T 3paj_A 205 YLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAIS---AGADIIMLDNF----SLEMMREAVKINAGRAA 277 (320)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHH---TTCSEEEEESC----CHHHHHHHHHHHTTSSE
T ss_pred hccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHH---cCCCEEEECCC----CHHHHHHHHHHhCCCCe
Confidence 66666654443334444432 222 2357888988888876 35899999963 33233222222222345
Q ss_pred EEEEccCChHHHHHHHHcCCCceE
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l 117 (184)
|..+..-+.+.+....+.|++.+-
T Consensus 278 ieaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 278 LENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp EEEESSCCHHHHHHHHTTTCSEEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEEE
Confidence 566777788888889999997553
No 236
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=54.84 E-value=59 Score=23.72 Aligned_cols=87 Identities=15% Similarity=0.133 Sum_probs=48.5
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCC-CC-CCHHHHHHHhcccCCCCEE--EEEccCChHHHHHHHHcCCCceEeCCCC-H
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHM-PD-MDGFKLHEQVGLEMDLPVI--MMSVDGCTQDVMKGVTHGACNYLLKPIR-I 123 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l-~~-~~g~~l~~~l~~~~~~~iI--i~~~~~~~~~~~~a~~~ga~~~l~kP~~-~ 123 (184)
+..+.++.+........+=++|-+. |. .-|..+++.++...+.|+. +++. ....+...+.++||+.+...... .
T Consensus 14 ~l~~~i~~~~~gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~-dp~~~i~~~~~aGAd~itvh~Ea~~ 92 (231)
T 3ctl_A 14 KFKEQIEFIDSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVT-RPQDYIAQLARAGADFITLHPETIN 92 (231)
T ss_dssp GHHHHHHHHHTTCSCEEEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESS-CGGGTHHHHHHHTCSEEEECGGGCT
T ss_pred hHHHHHHHHHcCCCEEEEEEEeCccCccchhcHHHHHHHHhccCCcEEEEEEec-CHHHHHHHHHHcCCCEEEECcccCC
Confidence 4455555553111111233556542 33 2378899999765445543 3332 22446788999999977766544 3
Q ss_pred HHHHHHHHHHHcC
Q 029986 124 KELRNIWQHVAQQ 136 (184)
Q Consensus 124 ~~l~~~l~~~~~~ 136 (184)
..+.+.++.+.+.
T Consensus 93 ~~~~~~i~~i~~~ 105 (231)
T 3ctl_A 93 GQAFRLIDEIRRH 105 (231)
T ss_dssp TTHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHc
Confidence 3466666666543
No 237
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=54.67 E-value=44 Score=23.55 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=40.3
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcCCe--E-EEECCHHHHHHHHHh--cCCCccEEEEeCCC
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYE--V-TKCNRAEIALDMLRM--SKNGYDIVISDVHM 73 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~~~--v-~~~~~~~~~~~~l~~--~~~~~dlvilD~~l 73 (184)
.+++.+|.-+|-++...+..++.+...+.. + ....+..+.+..+.. ....+|+||+|...
T Consensus 80 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~ 144 (221)
T 3u81_A 80 LQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWK 144 (221)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCG
T ss_pred CCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCc
Confidence 344668999999999999888888776542 3 345666555433221 01469999999743
No 238
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=54.63 E-value=19 Score=26.24 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhcCCCccE-EEEeCCCCCCC---HHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 49 RAEIALDMLRMSKNGYDI-VISDVHMPDMD---GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dl-vilD~~l~~~~---g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+..+..+.+.. .+.|. .+.|....... .+++++.++...++|+++...-.+.+.+..++..||+..+.
T Consensus 32 d~~~~a~~~~~--~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 32 DPVEAARAYDE--AGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp CHHHHHHHHHH--HTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHH--cCCCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 44444444432 23454 44566533222 24567777666689999887777788999999999998775
No 239
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=54.61 E-value=82 Score=26.27 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=49.4
Q ss_pred CCccEEEE-eCCC---CCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHH-cCCCceE------eCCCCHHHHHHHH
Q 029986 62 NGYDIVIS-DVHM---PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVT-HGACNYL------LKPIRIKELRNIW 130 (184)
Q Consensus 62 ~~~dlvil-D~~l---~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~-~ga~~~l------~kP~~~~~l~~~l 130 (184)
.+.+.+++ ++.- ..+-.+++++.+....++|||.-..-.+.+.+.++++ .|+++.+ -.++...++.+.+
T Consensus 464 ~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l 543 (555)
T 1jvn_A 464 LGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYL 543 (555)
T ss_dssp TTCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHHHH
Confidence 44676665 4321 1122478888887667899987766777889999988 8999876 4578888887765
Q ss_pred H
Q 029986 131 Q 131 (184)
Q Consensus 131 ~ 131 (184)
.
T Consensus 544 ~ 544 (555)
T 1jvn_A 544 L 544 (555)
T ss_dssp H
T ss_pred H
Confidence 4
No 240
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=54.60 E-value=56 Score=23.35 Aligned_cols=70 Identities=20% Similarity=0.261 Sum_probs=45.3
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcCC--eE-EEECCHHHHHHHHHhcC--CCccEEEEeCCCCCCCHHHHHHHh
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLY--EV-TKCNRAEIALDMLRMSK--NGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~~--~v-~~~~~~~~~~~~l~~~~--~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
.+++.+|..+|-++...+..+..+...|. .+ ....+..+.+..+.... ..+|+||+|.. ..+-.++++.+
T Consensus 94 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~--~~~~~~~l~~~ 168 (232)
T 3cbg_A 94 LPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD--KRNYPRYYEIG 168 (232)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC--GGGHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC--HHHHHHHHHHH
Confidence 34456899999999998888888876554 23 34566666655543212 56999999864 22334445544
No 241
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=54.39 E-value=71 Score=24.48 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=42.7
Q ss_pred EEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCce
Q 029986 45 TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
..+.+.+++.+.+. .++|+|.+|-. +--++.+.++....-..+..+..-+.+.+....+.|+|.+
T Consensus 214 VEvdtlde~~eAl~---aGaD~I~LDn~----~~~~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 214 IEVETLDQLRTALA---HGARSVLLDNF----TLDMMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEESSHHHHHHHHH---TTCEEEEEESC----CHHHHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEeCCHHHHHHHHH---cCCCEEEECCC----CHHHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 46888998888876 45899999963 3333333333222223455566677888888889999755
No 242
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=54.13 E-value=6.7 Score=27.75 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=32.6
Q ss_pred Ce-EEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEE
Q 029986 18 LR-VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69 (184)
Q Consensus 18 ~~-Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvil 69 (184)
|+ |+|+|........+..+|++.|+.+......+..++.+.. ..+|.+|+
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dglil 51 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLII 51 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEE
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhh--CCCCEEEE
Confidence 35 9999976666667888999888877766543211222321 13788888
No 243
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=54.00 E-value=56 Score=26.79 Aligned_cols=56 Identities=18% Similarity=0.082 Sum_probs=40.8
Q ss_pred CCccEEEEeCCCCCCC-HHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 62 NGYDIVISDVHMPDMD-GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 62 ~~~dlvilD~~l~~~~-g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.++|+|.+|...+... -.++++.++.. ++.||++ ..-.+.+.+..+.++||+...+
T Consensus 240 aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 240 AGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp TTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred cccceEEecccCCcchhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHHcCCCEEEE
Confidence 4699999998766432 35678888644 4667765 3345678899999999997765
No 244
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=53.62 E-value=35 Score=24.72 Aligned_cols=78 Identities=10% Similarity=0.264 Sum_probs=51.0
Q ss_pred CHHHHHHHHHhcCCCccEEEE-eCC----CCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHc-----C-CCceE
Q 029986 49 RAEIALDMLRMSKNGYDIVIS-DVH----MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTH-----G-ACNYL 117 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvil-D~~----l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~-----g-a~~~l 117 (184)
+..+....+. +..++.+++ +.. ..+ -.++++++++...++|+|.-..-.+.+.+..+++. | +++.+
T Consensus 145 ~~~e~~~~~~--~~G~~~i~~t~~~~~g~~~g-~~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLK--EYGLEEIVHTEIEKDGTLQE-HDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHH--TTTCCEEEEEETTHHHHTCC-CCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHH--hCCCCEEEEEeecccccCCc-CCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 4445444443 455775555 432 112 23788888865557899988777778899999888 9 98876
Q ss_pred ------eCCCCHHHHHHH
Q 029986 118 ------LKPIRIKELRNI 129 (184)
Q Consensus 118 ------~kP~~~~~l~~~ 129 (184)
..+++..++.+.
T Consensus 222 vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 222 VGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp ECHHHHTTSSCHHHHHHH
T ss_pred eeHHHHcCCCCHHHHHHH
Confidence 356676666543
No 245
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=53.34 E-value=43 Score=28.10 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=40.3
Q ss_pred CCCccEEEEeCCCCCCC-HHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 61 KNGYDIVISDVHMPDMD-GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 61 ~~~~dlvilD~~l~~~~-g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
+...|++++|....... -+++++.++.. ++++|| ..+-.+.+.+...+++||+..-
T Consensus 291 ~AGvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~vi-aGNVaT~e~a~~Li~aGAD~vk 348 (556)
T 4af0_A 291 EAGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVI-AGNVVTREQAAQLIAAGADGLR 348 (556)
T ss_dssp HTTCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHHTCSEEE
T ss_pred hcCCcEEEEeccccccHHHHHHHHHHHhhCCcceEE-eccccCHHHHHHHHHcCCCEEe
Confidence 35689999998765543 36677777644 566554 4566778888899999999764
No 246
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=53.01 E-value=17 Score=26.38 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=37.0
Q ss_pred CccEEEEeCCCCCCCH-------HHHHHHhcccC-CCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 63 GYDIVISDVHMPDMDG-------FKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 63 ~~dlvilD~~l~~~~g-------~~l~~~l~~~~-~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
..|.|+++...|+..| ++.++++++.. +.|+++.. .-+.+.+..+.++|++.++.
T Consensus 138 ~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~G-GI~~~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 138 PVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDG-GLGPSTIDVAASAGANCIVA 200 (228)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEES-SCSTTTHHHHHHHTCCEEEE
T ss_pred CCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEEC-CcCHHHHHHHHHcCCCEEEE
Confidence 4799999887776433 44556665443 67776554 34456777888889998863
No 247
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=52.75 E-value=40 Score=21.11 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=16.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHH
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIA 53 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~ 53 (184)
|+|.|.+....+.++.-..+.|+++..+.+.+++
T Consensus 80 iiiydqdqnrleefsrevrrrgfevrtvtspddf 113 (134)
T 2l69_A 80 IIIYDQDQNRLEEFSREVRRRGFEVRTVTSPDDF 113 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHH
T ss_pred EEEEeCchhHHHHHHHHHHhcCceEEEecChHHH
Confidence 4444444444444444444445555555544443
No 248
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=52.24 E-value=28 Score=27.60 Aligned_cols=105 Identities=17% Similarity=0.144 Sum_probs=63.3
Q ss_pred CeEEEEeC--CHH---HHHHHHHHHHhcCCeEEEECCHHHHHHHHH-------------------hcCCCccEEEEeCCC
Q 029986 18 LRVLVVDD--DPI---WLRILEKMLRKCLYEVTKCNRAEIALDMLR-------------------MSKNGYDIVISDVHM 73 (184)
Q Consensus 18 ~~Ilivdd--~~~---~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~-------------------~~~~~~dlvilD~~l 73 (184)
.+|+|+.. ++. ....|..+|.+.|+.|..-....+.+.... .....+|+||+
T Consensus 39 k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~---- 114 (365)
T 3pfn_A 39 KSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIIC---- 114 (365)
T ss_dssp CEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEE----
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEE----
Confidence 36888873 233 345566777777888875443333221110 00134677776
Q ss_pred CCCCH--HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCCCCC
Q 029986 74 PDMDG--FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPKPFE 141 (184)
Q Consensus 74 ~~~~g--~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~~ 141 (184)
-++|| +...+.+. ....||+-+. .|-.+|+. +++.+++...+..++++.....
T Consensus 115 lGGDGT~L~aa~~~~-~~~~PvlGiN-------------~G~LGFLt-~~~~~~~~~~l~~vl~g~~~v~ 169 (365)
T 3pfn_A 115 LGGDGTLLYASSLFQ-GSVPPVMAFH-------------LGSLGFLT-PFSFENFQSQVTQVIEGNAAVV 169 (365)
T ss_dssp ESSTTHHHHHHHHCS-SSCCCEEEEE-------------SSSCTTTC-CEESTTHHHHHHHHHHSCCBEE
T ss_pred EcChHHHHHHHHHhc-cCCCCEEEEc-------------CCCCccce-eecHHHHHHHHHHHHcCCCeEE
Confidence 26777 33333332 2467887663 37778888 7888899999999998765433
No 249
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=52.06 E-value=87 Score=24.80 Aligned_cols=107 Identities=7% Similarity=0.046 Sum_probs=66.4
Q ss_pred CCeEEEEeCCH-HHHHHHHHHHHhcCCeEE-EEC-CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCE
Q 029986 17 GLRVLVVDDDP-IWLRILEKMLRKCLYEVT-KCN-RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~-~~~~~l~~~L~~~~~~v~-~~~-~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~i 93 (184)
+.+++|+.+.+ ...+.+..+....+-.+. ... ..++..+++.. .|++++-.. .++-|..+++.+. ..+||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~g~~~lEAma--~G~Pv 393 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FEPCGLTQLYGLK--YGTLP 393 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cCCCcHHHHHHHH--CCCCE
Confidence 45666666543 355666666665543332 222 33333455542 578877544 3444556666653 35787
Q ss_pred EEEEccCChHHHHHHHHcC---------CCceEeCCCCHHHHHHHHHHHH
Q 029986 94 IMMSVDGCTQDVMKGVTHG---------ACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~g---------a~~~l~kP~~~~~l~~~l~~~~ 134 (184)
|... .....+.+..| ..+++..|.+.++|.+.+..++
T Consensus 394 I~s~----~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 439 (485)
T 2qzs_A 394 LVRR----TGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAF 439 (485)
T ss_dssp EEES----SHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHH
T ss_pred EECC----CCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHH
Confidence 7542 24455666777 8899999999999999999887
No 250
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=51.51 E-value=86 Score=24.60 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=32.7
Q ss_pred CCCCEEEEEccCC--hHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHc
Q 029986 89 MDLPVIMMSVDGC--TQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQ 135 (184)
Q Consensus 89 ~~~~iIi~~~~~~--~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~ 135 (184)
+++-+|+++.... .+.+..|+++|-+=|+-||+ +.++..+.+..+.+
T Consensus 95 ~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~ 145 (412)
T 4gqa_A 95 PQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARR 145 (412)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHH
Confidence 4455555554333 46788999999999999998 56677666666544
No 251
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=51.13 E-value=55 Score=25.80 Aligned_cols=67 Identities=16% Similarity=-0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCccEEEEeCCCCCCCH-HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 50 AEIALDMLRMSKNGYDIVISDVHMPDMDG-FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 50 ~~~~~~~l~~~~~~~dlvilD~~l~~~~g-~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
..+..+.+. +.++|+|.+|........ .+.++.+++...-..|+...-.+.+.+..+.++|++...+
T Consensus 101 ~~e~~~~a~--~aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 101 ELQRAEALR--DAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHH--HTTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH--HcCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEE
No 252
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=51.06 E-value=51 Score=26.02 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCCC-CHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 51 EIALDMLRMSKNGYDIVISDVHMPDM-DGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 51 ~~~~~~l~~~~~~~dlvilD~~l~~~-~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.+..+.+. +..+|+|.+|...... ...+.+++++.. ++++|++ ..-.+.+.+..+.++||+...+
T Consensus 110 ~~~~~~li--eaGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~-G~v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 110 EERVKALV--EAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp HHHHHHHH--HTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHH--hCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEe-eeeCCHHHHHHHHHcCCCEEEE
Confidence 44444444 3458999998754322 235667777544 4666654 2335678889999999997776
No 253
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=50.33 E-value=82 Score=23.99 Aligned_cols=67 Identities=10% Similarity=-0.009 Sum_probs=43.5
Q ss_pred EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 44 VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 44 v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
...+.+.+++.+.+. .++|+|.+|-.-+ -++.+.++....-..+..+..-+.+.+....+.|++.+-
T Consensus 202 eVEv~tl~ea~eAl~---aGaD~I~LDn~~~----~~l~~av~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 202 EVEVTNLDELNQAIA---AKADIVMLDNFSG----EDIDIAVSIARGKVALEVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp EEEESSHHHHHHHHH---TTCSEEEEESCCH----HHHHHHHHHHTTTCEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEeCCHHHHHHHHH---cCCCEEEEcCCCH----HHHHHHHHhhcCCceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 347889999988876 4589999996322 222222221122335556677778888888899998543
No 254
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=49.88 E-value=39 Score=21.99 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=37.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
+++.+++==-++..+..+...|..+|..+...... .....+|+++.|-
T Consensus 6 dgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~der--------~~~~eyDi~lTDn 53 (117)
T 2kx7_A 6 DDVCVMVDVTSAEIRNIVTRQLENWGATCITPDER--------LISQDYDIFLTDN 53 (117)
T ss_dssp SSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCSS--------SSCCCCSEEEEES
T ss_pred cCcEEEEEcCcHHHHHHHHHHHHhcCCeEEecccc--------CCCCcccEEEecC
Confidence 46778888899999999999999999877655421 2245699999985
No 255
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=49.63 E-value=61 Score=23.12 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=30.4
Q ss_pred CCCccEEEEeCCC-----CCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHH
Q 029986 61 KNGYDIVISDVHM-----PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKG 108 (184)
Q Consensus 61 ~~~~dlvilD~~l-----~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a 108 (184)
+..+|+||+|--. .-.+.-++++.+...+...-+|+|+...++...+.
T Consensus 118 ~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 118 DPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred cCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 4569999999632 22344567777765665555666666666666554
No 256
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=49.62 E-value=76 Score=23.40 Aligned_cols=99 Identities=12% Similarity=0.002 Sum_probs=58.1
Q ss_pred HHHHHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc--cCCCCEEEEEccCChHHHHHH
Q 029986 33 LEKMLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL--EMDLPVIMMSVDGCTQDVMKG 108 (184)
Q Consensus 33 l~~~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~--~~~~~iIi~~~~~~~~~~~~a 108 (184)
+++.|..... ....+-......+.+. ..++|.+++|+.-...+--++...++. ....++++=....+...+..+
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~--~~gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~ 87 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLG--LAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRL 87 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHT--TSCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHH--hCCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHH
Confidence 4555554222 2222223344444443 567999999997654444444444421 234556555566677788899
Q ss_pred HHcCCCceE-eCCCCHHHHHHHHHHH
Q 029986 109 VTHGACNYL-LKPIRIKELRNIWQHV 133 (184)
Q Consensus 109 ~~~ga~~~l-~kP~~~~~l~~~l~~~ 133 (184)
++.|+++.+ +|--+.+++......+
T Consensus 88 l~~g~~gI~~P~V~s~~ev~~~~~~~ 113 (256)
T 1dxe_A 88 LDIGFYNFLIPFVETKEEAELAVAST 113 (256)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHTT
T ss_pred HhcCCceeeecCcCCHHHHHHHHHHh
Confidence 999998865 4444677886665544
No 257
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=49.12 E-value=64 Score=24.78 Aligned_cols=52 Identities=12% Similarity=0.108 Sum_probs=40.1
Q ss_pred HHHHhcc-cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 81 LHEQVGL-EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 81 l~~~l~~-~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
.++..+. .+..||.+-. .+.+.+.+|+++|++-..+..++++++.+++..+.
T Consensus 197 Av~~ar~~~p~~kIeVEv--~tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~~ 249 (300)
T 3l0g_A 197 AIQRLRKNLKNEYIAIEC--DNISQVEESLSNNVDMILLDNMSISEIKKAVDIVN 249 (300)
T ss_dssp HHHHHHHHSSSCCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCEEEEE--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhhc
Confidence 4444443 3567777654 45788999999999999999999999999998763
No 258
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=48.89 E-value=53 Score=23.21 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=32.3
Q ss_pred CccEEEEeCCCCCCCH-------HHHHHHhccc-----CCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 63 GYDIVISDVHMPDMDG-------FKLHEQVGLE-----MDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 63 ~~dlvilD~~l~~~~g-------~~l~~~l~~~-----~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
..|.|+++...++.+| .+-++.+++. .+.|+++. ..-+.+...++.++|++.++
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~-GGI~~~~~~~~~~~Gad~vv 196 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVD-GGVDNKTIRACYEAGANVFV 196 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEE-SSCCTTTHHHHHHHTCCEEE
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEE-CcCCHHHHHHHHHcCCCEEE
Confidence 3688888776665443 2333444321 15666554 44446667778888999886
No 259
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=48.28 E-value=47 Score=24.26 Aligned_cols=80 Identities=11% Similarity=0.004 Sum_probs=48.6
Q ss_pred HHHhcCCeEEEEC---CHHHHHHHHHhcCC-CccEEEEeCCCCCCCH-------HHHHHHhcccC-CCCEEEEEccCChH
Q 029986 36 MLRKCLYEVTKCN---RAEIALDMLRMSKN-GYDIVISDVHMPDMDG-------FKLHEQVGLEM-DLPVIMMSVDGCTQ 103 (184)
Q Consensus 36 ~L~~~~~~v~~~~---~~~~~~~~l~~~~~-~~dlvilD~~l~~~~g-------~~l~~~l~~~~-~~~iIi~~~~~~~~ 103 (184)
.+++.|..+...- +..+.++.+. .. .+|.|++=...|+..| ++-++++++.. +.+| .+...-+.+
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l--~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I-~VdGGI~~~ 185 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPIL--DTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNI-QVDGGLNIE 185 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHH--TTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEE-EEESSCCHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHh--hcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCeE-EEECCCCHH
Confidence 6666777655433 2333444443 21 4799887666676544 44455554332 4444 445566788
Q ss_pred HHHHHHHcCCCceEe
Q 029986 104 DVMKGVTHGACNYLL 118 (184)
Q Consensus 104 ~~~~a~~~ga~~~l~ 118 (184)
.+..+.++||+.++.
T Consensus 186 ti~~~~~aGAd~~V~ 200 (227)
T 1tqx_A 186 TTEISASHGANIIVA 200 (227)
T ss_dssp HHHHHHHHTCCEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 888999999998863
No 260
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=47.42 E-value=30 Score=25.56 Aligned_cols=41 Identities=17% Similarity=0.028 Sum_probs=32.5
Q ss_pred HHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 78 g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
..+++++++...++||++-..-.+.+.+..++.+||+.++.
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvV 229 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVII 229 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 45677777665678988877666688999999999999875
No 261
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=47.33 E-value=18 Score=26.58 Aligned_cols=52 Identities=15% Similarity=0.216 Sum_probs=35.4
Q ss_pred CCCccEEEEeCCCC--CCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 61 KNGYDIVISDVHMP--DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 61 ~~~~dlvilD~~l~--~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
..+.|.|++--... ..+..++++.++. .++|++++.... + .+..|+++|+.-
T Consensus 29 ~~GtD~i~vGGs~gvt~~~~~~~v~~ik~-~~~Pvvlfp~~~--~----~v~~gaD~~l~p 82 (228)
T 3vzx_A 29 ESGTDAVIIGGSDGVTEDNVLRMMSKVRR-FLVPCVLEVSAI--E----AIVPGFDLYFIP 82 (228)
T ss_dssp TSSCSEEEECCCSCCCHHHHHHHHHHHTT-SSSCEEEECSCG--G----GCCSCCSEEEEE
T ss_pred HcCCCEEEECCcCCCCHHHHHHHHHHhhc-cCCCEEEeCCCH--H----HccccCCEEEEe
Confidence 45579999976532 2345667777776 789999987552 2 234799999854
No 262
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=47.23 E-value=1.2e+02 Score=24.89 Aligned_cols=84 Identities=14% Similarity=0.140 Sum_probs=52.8
Q ss_pred HHHHHHHHhc-CCeEE--EECCHHHHHHHHHhcCCCccEEEEeCCCC--------------CCCHHHHHHHhcccCCCCE
Q 029986 31 RILEKMLRKC-LYEVT--KCNRAEIALDMLRMSKNGYDIVISDVHMP--------------DMDGFKLHEQVGLEMDLPV 93 (184)
Q Consensus 31 ~~l~~~L~~~-~~~v~--~~~~~~~~~~~l~~~~~~~dlvilD~~l~--------------~~~g~~l~~~l~~~~~~~i 93 (184)
+.++..-+.. +..+. .+.+.+.+..+.. .+.|.|.+..... ....+..+..+....++||
T Consensus 285 ~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~---aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipV 361 (514)
T 1jcn_A 285 AMVHYIKQKYPHLQVIGGNVVTAAQAKNLID---AGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPI 361 (514)
T ss_dssp HHHHHHHHHCTTCEEEEEEECSHHHHHHHHH---HTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCE
T ss_pred HHHHHHHHhCCCCceEecccchHHHHHHHHH---cCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCE
Confidence 4444433343 44443 4667777776654 3478887733111 1123556666655457899
Q ss_pred EEEEccCChHHHHHHHHcCCCceE
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l 117 (184)
|.-..-.+...+.+++..||+...
T Consensus 362 ia~GGI~~~~di~kala~GAd~V~ 385 (514)
T 1jcn_A 362 IADGGIQTVGHVVKALALGASTVM 385 (514)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEE
T ss_pred EEECCCCCHHHHHHHHHcCCCeee
Confidence 988777788999999999998764
No 263
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=46.98 E-value=92 Score=23.72 Aligned_cols=62 Identities=11% Similarity=0.042 Sum_probs=42.8
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
+..+.++.+. +.++|+|.+....| .++++.++.. .++++... .+...+..+.+.|++.++..
T Consensus 84 ~~~~~~~~~~--~~g~d~V~~~~g~p----~~~~~~l~~~-gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAII--EAGIRVVETAGNDP----GEHIAEFRRH-GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHH--HTTCCEEEEEESCC----HHHHHHHHHT-TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHH--hcCCCEEEEcCCCc----HHHHHHHHHc-CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 3456666665 35689999887654 4677777543 56766433 45677888999999988873
No 264
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=46.93 E-value=92 Score=23.60 Aligned_cols=102 Identities=12% Similarity=0.180 Sum_probs=55.4
Q ss_pred CCeEEEE-eCCHHHHHHHHHHHHhcCCeEEEEC--CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCE
Q 029986 17 GLRVLVV-DDDPIWLRILEKMLRKCLYEVTKCN--RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPV 93 (184)
Q Consensus 17 ~~~Iliv-dd~~~~~~~l~~~L~~~~~~v~~~~--~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~i 93 (184)
+.+++++ .+++..++.+........ .+.... ...+..+++. . .|++++.. .|+ +++.+ ...+|+
T Consensus 230 ~~~lv~~~g~~~~~~~~l~~~~~~~~-~v~~~g~~g~~~~~~~~~--~--ad~~v~~S-----~g~-~lEA~--a~G~Pv 296 (376)
T 1v4v_A 230 HLTFVYPVHLNPVVREAVFPVLKGVR-NFVLLDPLEYGSMAALMR--A--SLLLVTDS-----GGL-QEEGA--ALGVPV 296 (376)
T ss_dssp TSEEEEECCSCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHH--T--EEEEEESC-----HHH-HHHHH--HTTCCE
T ss_pred CeEEEEECCCCHHHHHHHHHHhccCC-CEEEECCCCHHHHHHHHH--h--CcEEEECC-----cCH-HHHHH--HcCCCE
Confidence 3566664 555545555555543211 343331 2334445544 2 57777643 344 33443 357898
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
|+......... ..+.| .++++. .+.++|.+.+..++..
T Consensus 297 I~~~~~~~~~~---~~~~g-~g~lv~-~d~~~la~~i~~ll~d 334 (376)
T 1v4v_A 297 VVLRNVTERPE---GLKAG-ILKLAG-TDPEGVYRVVKGLLEN 334 (376)
T ss_dssp EECSSSCSCHH---HHHHT-SEEECC-SCHHHHHHHHHHHHTC
T ss_pred EeccCCCcchh---hhcCC-ceEECC-CCHHHHHHHHHHHHhC
Confidence 87533223233 24555 467774 4889999999988763
No 265
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=46.92 E-value=97 Score=23.87 Aligned_cols=106 Identities=20% Similarity=0.213 Sum_probs=64.0
Q ss_pred CCeEEEEeCC----HHHHHHHHHHHHhcCC--eEEEEC-----CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHh
Q 029986 17 GLRVLVVDDD----PIWLRILEKMLRKCLY--EVTKCN-----RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 17 ~~~Ilivdd~----~~~~~~l~~~L~~~~~--~v~~~~-----~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
..+++|+.+. +.....+....+..+. .|.... +.++..+++.. .|++++-.. .++-|..+++.+
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~-~E~~~~~~lEAm 336 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSI-REGFGLTVTEAM 336 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCS-SCSSCHHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCC-cCCCccHHHHHH
Confidence 4677777775 3344455555544332 333332 13455555542 578777543 244456666666
Q ss_pred cccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 86 GLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 86 ~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
. ..+|+|... .....+.+..|..+++.. +.+++.+.+..++.
T Consensus 337 a--~G~PvI~~~----~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 337 W--KGKPVIGRA----VGGIKFQIVDGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp H--TTCCEEEES----CHHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH
T ss_pred H--cCCCEEEcc----CCCChhheecCCCeEEEC--CHHHHHHHHHHHHh
Confidence 3 467887642 234556667788889986 88999999988876
No 266
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=46.68 E-value=70 Score=23.95 Aligned_cols=54 Identities=11% Similarity=0.040 Sum_probs=35.5
Q ss_pred HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe-----CCC----CHHHHHHHHHHHH
Q 029986 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL-----KPI----RIKELRNIWQHVA 134 (184)
Q Consensus 79 ~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~-----kP~----~~~~l~~~l~~~~ 134 (184)
.++++++++..++|+++=..-.+++.+.++ .||++.++ ++. ...++.+.++..+
T Consensus 191 ~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~~~~~~~~~~fv~~l~~~~ 253 (271)
T 1ujp_A 191 KDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRALEEGRSLAPLLQEIRQGL 253 (271)
T ss_dssp HHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhcccchHHHHHHHHHHHHHHH
Confidence 467888876667888765555567777775 89999975 333 3445555555544
No 267
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=46.63 E-value=71 Score=22.23 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=27.9
Q ss_pred ccCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCeEEEEC
Q 029986 12 DQFPAGLRVLVVDDDP--IWLRILEKMLRKCLYEVTKCN 48 (184)
Q Consensus 12 ~~~~~~~~Ilivdd~~--~~~~~l~~~L~~~~~~v~~~~ 48 (184)
.+-|-.|||.|--|+. .+.+.|..+|++.|++|.-+.
T Consensus 16 ~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G 54 (166)
T 3s5p_A 16 TQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLG 54 (166)
T ss_dssp ---CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEcC
Confidence 3444458999999987 677889999999999887553
No 268
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=46.40 E-value=66 Score=23.37 Aligned_cols=97 Identities=15% Similarity=0.099 Sum_probs=58.6
Q ss_pred HHHHHHhcCCeEE--EECCHHHHHHHHHhcCCCccEEEEeCCCC-----CCCHHHHHHHh---cccCCCCEEEEEccCCh
Q 029986 33 LEKMLRKCLYEVT--KCNRAEIALDMLRMSKNGYDIVISDVHMP-----DMDGFKLHEQV---GLEMDLPVIMMSVDGCT 102 (184)
Q Consensus 33 l~~~L~~~~~~v~--~~~~~~~~~~~l~~~~~~~dlvilD~~l~-----~~~g~~l~~~l---~~~~~~~iIi~~~~~~~ 102 (184)
.-..|+..|+.+. -+..+-..+..+. .-++|.|=+|-.+- +.....+++.+ .+..++.+|+= .=.+.
T Consensus 144 ~l~~l~~~G~~ialDdfG~g~ssl~~L~--~l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~viae-GVEt~ 220 (259)
T 3s83_A 144 ILKTLRDAGAGLALDDFGTGFSSLSYLT--RLPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVVAE-GVENA 220 (259)
T ss_dssp HHHHHHHHTCEEEEECC---CHHHHHHH--HSCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEEEEC-CCCSH
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHH--hCCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeEEEE-eCCCH
Confidence 3455666788776 3555666677776 45689999986321 11223344444 22345555543 34456
Q ss_pred HHHHHHHHcCCCce----EeCCCCHHHHHHHHHH
Q 029986 103 QDVMKGVTHGACNY----LLKPIRIKELRNIWQH 132 (184)
Q Consensus 103 ~~~~~a~~~ga~~~----l~kP~~~~~l~~~l~~ 132 (184)
+....+.+.|++.+ +.||.+.+++...+..
T Consensus 221 ~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 221 EMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 67777888888532 6799999999877664
No 269
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=46.37 E-value=1.2e+02 Score=24.79 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=59.2
Q ss_pred CeEEEEe----CCHHHHHHHHHHHHhc-CCeE--EEECCHHHHHHHHHhcCCCccEEEEeCCCC-----------CCCHH
Q 029986 18 LRVLVVD----DDPIWLRILEKMLRKC-LYEV--TKCNRAEIALDMLRMSKNGYDIVISDVHMP-----------DMDGF 79 (184)
Q Consensus 18 ~~Ilivd----d~~~~~~~l~~~L~~~-~~~v--~~~~~~~~~~~~l~~~~~~~dlvilD~~l~-----------~~~g~ 79 (184)
..+++++ ......+.++..-+.. +..+ ..+.+.+++..+.. .+.|.|.+-..-. +...+
T Consensus 242 ~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~---aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~ 318 (490)
T 4avf_A 242 VDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAE---AGADAVKVGIGPGSICTTRIVAGVGVPQI 318 (490)
T ss_dssp CSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH---TTCSEEEECSSCSTTCHHHHHTCBCCCHH
T ss_pred cceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHH---cCCCEEEECCCCCcCCCccccCCCCccHH
Confidence 3466665 3333444444444443 3333 24677888777664 4589988732110 01234
Q ss_pred HHHHHhcc---cCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 80 KLHEQVGL---EMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 80 ~l~~~l~~---~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+.+..+.. ..++|||.-..-.+...+.+++.+||+....
T Consensus 319 ~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 319 SAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 44555532 2468999877777899999999999988754
No 270
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=46.15 E-value=78 Score=22.62 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY 42 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~ 42 (184)
+-+|.-||.++...+..+..++..|+
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~ 76 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPP 76 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 45899999999999999999998775
No 271
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=45.91 E-value=37 Score=29.01 Aligned_cols=100 Identities=6% Similarity=-0.042 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCeEEEE---CCHHHHHHHHHhcCCCccEEEEeCCCCC-C-CHHHHHHHhcccCCCCEEEEEccCCh
Q 029986 28 IWLRILEKMLRKCLYEVTKC---NRAEIALDMLRMSKNGYDIVISDVHMPD-M-DGFKLHEQVGLEMDLPVIMMSVDGCT 102 (184)
Q Consensus 28 ~~~~~l~~~L~~~~~~v~~~---~~~~~~~~~l~~~~~~~dlvilD~~l~~-~-~g~~l~~~l~~~~~~~iIi~~~~~~~ 102 (184)
.-...+..+|...|++|... -+ +++.+... +..+|+|.+-..+.. + ..-++++.|+... ...|++......
T Consensus 525 ~ga~~va~~l~~aGfeVi~~g~~~t-ee~v~aa~--e~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG-~~~V~vgG~P~~ 600 (637)
T 1req_B 525 GREGFSSPVWHIAGIDTPQVEGGTT-AEIVEAFK--KSGAQVADLCSSAKVYAQQGLEVAKALKAAG-AKALYLSGAFKE 600 (637)
T ss_dssp HHHHHHHHHHHHTTCBCCEEECCCH-HHHHHHHH--HHTCSEEEEECCHHHHHHHHHHHHHHHHHTT-CSEEEEESCGGG
T ss_pred hhHHHHHHHHHhCCeeEEeCCCCCC-HHHHHHHH--hcCCCEEEEecccHHHHHHHHHHHHHHHhCC-CCeEEEeCCCCc
Confidence 34556677888889987643 33 66666665 345898888553321 1 1233555554332 233455543211
Q ss_pred -H-HHHHHHHcCCCceEeCCCCHHHHHHHHHH
Q 029986 103 -Q-DVMKGVTHGACNYLLKPIRIKELRNIWQH 132 (184)
Q Consensus 103 -~-~~~~a~~~ga~~~l~kP~~~~~l~~~l~~ 132 (184)
+ ......+ |+++|+.--.+..++...+..
T Consensus 601 d~~~~~~~~~-G~D~~~~~g~~~~~~l~~l~~ 631 (637)
T 1req_B 601 FGDDAAEAEK-LIDGRLFMGMDVVDTLSSTLD 631 (637)
T ss_dssp GGGGHHHHHH-HCCCEECTTCCHHHHHHHHHH
T ss_pred cchhhHHHHh-ccceEecCCcCHHHHHHHHHH
Confidence 1 1234455 999999888777666555443
No 272
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=45.84 E-value=75 Score=22.27 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=45.0
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcCC--eE-EEECCHHHHHHHHHhcC--CCccEEEEeCCCCCCCHHHHHHHh
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLY--EV-TKCNRAEIALDMLRMSK--NGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~~--~v-~~~~~~~~~~~~l~~~~--~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
.+++.+|..+|-++...+..+..+...|. .+ ....+..+.+..+.... ..+|+|++|.. ..+-.++++.+
T Consensus 91 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~ 165 (229)
T 2avd_A 91 LPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERC 165 (229)
T ss_dssp SCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHH
Confidence 34456899999999988888888877654 23 34556666554443211 46999999864 33334445544
No 273
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=45.71 E-value=75 Score=22.21 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=46.6
Q ss_pred ccCCCCCeEEEEeCCHHHHHHHHHHHHhcCCe--E-EEECCHHHHHHHHHhcC--CCccEEEEeCCCCCCCHHHHHHHh
Q 029986 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYE--V-TKCNRAEIALDMLRMSK--NGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 12 ~~~~~~~~Ilivdd~~~~~~~l~~~L~~~~~~--v-~~~~~~~~~~~~l~~~~--~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
...+++.+|..+|-++...+..+..+...+.. + ....+..+.+..+.... ..+|+|++|.. ..+-..+++.+
T Consensus 84 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~--~~~~~~~l~~~ 160 (225)
T 3tr6_A 84 LALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD--KANTDLYYEES 160 (225)
T ss_dssp TTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC--GGGHHHHHHHH
T ss_pred HhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC--HHHHHHHHHHH
Confidence 33444678999999999999988888876542 3 34567766655443110 56999999874 22233444444
No 274
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=44.59 E-value=76 Score=21.96 Aligned_cols=53 Identities=15% Similarity=0.111 Sum_probs=38.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
.+.+|.+..+.. ....+...+...+..+..+.+..+++.++. ....|+++.|.
T Consensus 110 ~g~~v~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~--~G~vDa~~~~~ 162 (239)
T 1lst_A 110 KGKHVGVLQGST-QEAYANDNWRTKGVDVVAYANQDLIYSDLT--AGRLDAALQDE 162 (239)
T ss_dssp TTCEEEEETTSH-HHHHHHHHTGGGTCEEEEESSHHHHHHHHH--TTSCSEEEEEH
T ss_pred CCCEEEEEcCcc-HHHHHHHhcccCCCeEEEcCCHHHHHHHHH--cCCCCEEEeCc
Confidence 356788776655 344455555445788889999999999998 56699999974
No 275
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=44.37 E-value=17 Score=26.11 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=4.7
Q ss_pred EEEEeCCCC
Q 029986 66 IVISDVHMP 74 (184)
Q Consensus 66 lvilD~~l~ 74 (184)
-+++|+++-
T Consensus 61 ~i~ld~~l~ 69 (218)
T 3jr2_A 61 ILVCDMKTT 69 (218)
T ss_dssp EEEEEEEEC
T ss_pred cEEEEEeec
Confidence 345566554
No 276
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=44.11 E-value=1.1e+02 Score=23.64 Aligned_cols=107 Identities=13% Similarity=0.095 Sum_probs=58.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEE-EEC-CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVT-KCN-RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~-~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iI 94 (184)
.+||.||.--..-...+...+...++++. .+. +.+.+.+... ..+..-++- +- +.+-..+.+-++
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~--~~~~~~~~~-------~~----~~ll~~~~vD~V 92 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSA--VYADARRIA-------TA----EEILEDENIGLI 92 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHH--HSSSCCEES-------CH----HHHHTCTTCCEE
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHH--HcCCCcccC-------CH----HHHhcCCCCCEE
Confidence 47899998654333344445555677755 333 3333333332 111001111 22 222123445555
Q ss_pred EEEccC--ChHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHcC
Q 029986 95 MMSVDG--CTQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQQ 136 (184)
Q Consensus 95 i~~~~~--~~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~~ 136 (184)
+++... ..+.+..++++|-.=|+-||+ +.++..+.+..+.+.
T Consensus 93 ~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 138 (361)
T 3u3x_A 93 VSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAET 138 (361)
T ss_dssp EECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTT
T ss_pred EEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 555433 346778999999999999997 666777777766543
No 277
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=44.04 E-value=41 Score=26.49 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=30.3
Q ss_pred hHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcCCC
Q 029986 102 TQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQPK 138 (184)
Q Consensus 102 ~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~ 138 (184)
.+.+..++++|..=++-||++.++..+.++.+.+...
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~ 120 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQGC 120 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCC
Confidence 4668889999999999999999998888887765443
No 278
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=43.89 E-value=28 Score=26.45 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=29.0
Q ss_pred HHHHHHHhcccCCCCEEE--EEccCChHHHHHHHHcCCCceEe
Q 029986 78 GFKLHEQVGLEMDLPVIM--MSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 78 g~~l~~~l~~~~~~~iIi--~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+++++++++....+|+++ ...-.+.+.+..++..||++++.
T Consensus 195 ~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~v 237 (305)
T 2nv1_A 195 PYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFV 237 (305)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEE
T ss_pred cHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHcCCCEEEE
Confidence 356677775556788884 33344678888999999998863
No 279
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=43.23 E-value=79 Score=23.60 Aligned_cols=56 Identities=20% Similarity=0.006 Sum_probs=36.8
Q ss_pred CCeEEEEeCC--------------------HHHHHHHHHHHHhcCCeEEEECCHH-----------------HHHHHHHh
Q 029986 17 GLRVLVVDDD--------------------PIWLRILEKMLRKCLYEVTKCNRAE-----------------IALDMLRM 59 (184)
Q Consensus 17 ~~~Ilivdd~--------------------~~~~~~l~~~L~~~~~~v~~~~~~~-----------------~~~~~l~~ 59 (184)
.|||+++... ......+...|.+.|++|..+.... ...+.++
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~- 81 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLR- 81 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHH-
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHH-
Confidence 3788888776 2355567778888899888665332 3445555
Q ss_pred cCCCccEEEEeCCCC
Q 029986 60 SKNGYDIVISDVHMP 74 (184)
Q Consensus 60 ~~~~~dlvilD~~l~ 74 (184)
+..||+|++....+
T Consensus 82 -~~~~Dvi~~~~~~~ 95 (342)
T 2iuy_A 82 -TADVDVVHDHSGGV 95 (342)
T ss_dssp -HCCCSEEEECSSSS
T ss_pred -hcCCCEEEECCchh
Confidence 34699999865443
No 280
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=43.16 E-value=76 Score=21.60 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=37.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
.+.+|.+..+... ..+|...+..+..+.+..+++.++. ....|+++.+.
T Consensus 111 ~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~--~g~~D~~~~~~ 159 (228)
T 2pyy_A 111 PGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQ--TKKADAVVFDA 159 (228)
T ss_dssp TTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHH--TTSSSEEEEEH
T ss_pred CCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHH--cCCCCEEEecH
Confidence 4678888877662 3445556788888999999999998 56689999974
No 281
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=43.08 E-value=1.1e+02 Score=23.44 Aligned_cols=106 Identities=15% Similarity=0.103 Sum_probs=59.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-CCeEE-EE-CCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC-LYEVT-KC-NRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~-~~~v~-~~-~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~i 93 (184)
.+||.||.--..-...+...|... ++++. .+ .+.+.+...... +.+-..+ + .+.+-..+.+-+
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----~g~~~~~------~----~~~ll~~~~~D~ 92 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER----FGGEPVE------G----YPALLERDDVDA 92 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH----HCSEEEE------S----HHHHHTCTTCSE
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH----cCCCCcC------C----HHHHhcCCCCCE
Confidence 468999998776663344444444 66654 33 334444433331 1121111 1 122212344555
Q ss_pred EEEEccC--ChHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHcC
Q 029986 94 IMMSVDG--CTQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQQ 136 (184)
Q Consensus 94 Ii~~~~~--~~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~~ 136 (184)
++++... ..+.+..++++|..=++-||+ +.++..+.+..+.+.
T Consensus 93 V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~ 139 (350)
T 3rc1_A 93 VYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARER 139 (350)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred EEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 5555433 346777899999998899997 566777777666554
No 282
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=43.05 E-value=44 Score=24.07 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=35.3
Q ss_pred CHHHHHHHhcccCCCCEE--EEEccCChHHHHHHHHcCCCceEeCCCCHHHH-HHHHHHHHc
Q 029986 77 DGFKLHEQVGLEMDLPVI--MMSVDGCTQDVMKGVTHGACNYLLKPIRIKEL-RNIWQHVAQ 135 (184)
Q Consensus 77 ~g~~l~~~l~~~~~~~iI--i~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l-~~~l~~~~~ 135 (184)
-|.+.++.++...+.|+. ++.. ....+...+.++|++.........++. ...++.+..
T Consensus 51 ~~~~~~~~lr~~~~~~~~v~lmv~-d~~~~i~~~~~agad~v~vH~~~~~~~~~~~~~~i~~ 111 (228)
T 1h1y_A 51 IGAPVIQSLRKHTKAYLDCHLMVT-NPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKA 111 (228)
T ss_dssp BCHHHHHHHHTTCCSEEEEEEESS-CGGGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHH
T ss_pred hCHHHHHHHHhhcCCcEEEEEEec-CHHHHHHHHHHcCCCEEEECCCCcccHHHHHHHHHHH
Confidence 367888888654344443 4443 335578888899999886654433344 555555543
No 283
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=42.63 E-value=1.2e+02 Score=23.77 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=28.2
Q ss_pred CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 89 MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 89 ~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
...|+|++-...+... ..+.| ..+++.+ +.++|.+.+..++.
T Consensus 319 ~g~PvV~~~~~~~~~e---~v~~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 319 MGVPVLVLRDTTERPE---GIEAG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp TTCCEEECCSSCSCHH---HHHHT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred hCCCEEEecCCCcchh---heeCC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 4789887633233322 35677 5677765 88999999888875
No 284
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=42.23 E-value=28 Score=25.34 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=23.2
Q ss_pred CccEEEEeC-CCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 63 GYDIVISDV-HMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 63 ~~dlvilD~-~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
.+|+|++|- +.-+.+-+++++.+.. .+++||+..
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~~-~~~~Vi~~G 135 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLAN-RGYRVIVAG 135 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHHH-TTCEEEEEE
T ss_pred CCCEEEEECcccCCHHHHHHHHHHhh-CCCEEEEEe
Confidence 489999985 3444566777777643 367777664
No 285
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=41.95 E-value=97 Score=25.37 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=39.6
Q ss_pred CCccEEEEeCCCCCCC-HHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 62 NGYDIVISDVHMPDMD-GFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 62 ~~~dlvilD~~l~~~~-g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.++|+|.+|....... ..++++.+++. ++.||+.- .-.+.+.+..+.++|++...+
T Consensus 266 aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~-~v~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 266 AGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGG-NVVTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp TTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred cCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEec-ccchHHHHHHHHHcCCCEEEE
Confidence 5689999988754433 25778888654 47787753 225578889999999987755
No 286
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=41.92 E-value=94 Score=22.28 Aligned_cols=67 Identities=10% Similarity=0.019 Sum_probs=32.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHH
Q 029986 62 NGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131 (184)
Q Consensus 62 ~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~ 131 (184)
.+.+++=+. +...++.+.++.++....-.++-...--..+.+..++.+||+... -|-...++.+..+
T Consensus 40 gGv~~iel~--~k~~~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v~-~p~~d~~v~~~~~ 106 (214)
T 1wbh_A 40 GGVRVLNVT--LRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAI-SPGLTEPLLKAAT 106 (214)
T ss_dssp TTCCEEEEE--SCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEE-ESSCCHHHHHHHH
T ss_pred cCCCEEEEe--CCChhHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEEE-cCCCCHHHHHHHH
Confidence 345544443 334556666666643221122222222334666777777877444 3444444444333
No 287
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=41.84 E-value=26 Score=27.31 Aligned_cols=58 Identities=14% Similarity=0.033 Sum_probs=39.6
Q ss_pred HHHHHHHhcccCCCCEEEEE--ccCChHHHHHHHHcCCCceEe-----CCCCHHHHHHHHHHHHc
Q 029986 78 GFKLHEQVGLEMDLPVIMMS--VDGCTQDVMKGVTHGACNYLL-----KPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 78 g~~l~~~l~~~~~~~iIi~~--~~~~~~~~~~a~~~ga~~~l~-----kP~~~~~l~~~l~~~~~ 135 (184)
+++++++++....+|+++++ .-.+++.+...++.|+++++. +.-++....+.+..+.+
T Consensus 228 ~lell~~i~~~~~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~ 292 (330)
T 2yzr_A 228 LYEVLLEVKKLGRLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATY 292 (330)
T ss_dssp HHHHHHHHHHHTSCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHH
Confidence 45888888665678986443 333578899999999999973 33455555555555554
No 288
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*
Probab=41.17 E-value=98 Score=24.33 Aligned_cols=83 Identities=8% Similarity=0.075 Sum_probs=52.3
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc-----CCCCEEEEEccCChHHHHHHHHcCCCceE-eCCCC
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE-----MDLPVIMMSVDGCTQDVMKGVTHGACNYL-LKPIR 122 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-----~~~~iIi~~~~~~~~~~~~a~~~ga~~~l-~kP~~ 122 (184)
+.++++++++.- ..+++.+++--++ +.++..++++.. ..+||+.-- -.+.....++++.|+.|++ +|+..
T Consensus 213 ~~~~ai~~~~~l-~~~~i~~iE~P~~--~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik~~~ 288 (392)
T 3p3b_A 213 NLNLTKEVLAAL-SDVNLYWLEEAFH--EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYDIIW 288 (392)
T ss_dssp CHHHHHHHHHHT-TTSCEEEEECSSS--CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCBTTT
T ss_pred CHHHHHHHHHHH-HhcCCCEEecCCc--ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeCccc
Confidence 577888887642 3467888877666 445556666544 456765433 3445678888888876665 67775
Q ss_pred --HHHHHHHHHHHHc
Q 029986 123 --IKELRNIWQHVAQ 135 (184)
Q Consensus 123 --~~~l~~~l~~~~~ 135 (184)
..+..++...+..
T Consensus 289 ~Git~~~~i~~~A~~ 303 (392)
T 3p3b_A 289 PGFTHWMELGEKLDA 303 (392)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 4555555554443
No 289
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=41.16 E-value=89 Score=24.41 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=38.1
Q ss_pred CeEEEEeCCHH-----HHHHHHHHHHhcCCeEEEEC------C---HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHH
Q 029986 18 LRVLVVDDDPI-----WLRILEKMLRKCLYEVTKCN------R---AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHE 83 (184)
Q Consensus 18 ~~Ilivdd~~~-----~~~~l~~~L~~~~~~v~~~~------~---~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~ 83 (184)
-|++||.|... ..+.+...|+..|+.+..+. + ..++.+.++ +..+|+||- +.+++-.++.+
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~--~~~~d~IIa---vGGGsv~D~AK 115 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYR--NDSFDFVVG---LGGGSPMDFAK 115 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHT--TSCCSEEEE---EESHHHHHHHH
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHH--hcCCCEEEE---eCChHHHHHHH
Confidence 47888877632 45677778877776654432 2 334444444 456898874 23556666666
Q ss_pred Hh
Q 029986 84 QV 85 (184)
Q Consensus 84 ~l 85 (184)
.+
T Consensus 116 ~i 117 (371)
T 1o2d_A 116 AV 117 (371)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 290
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=40.76 E-value=1.2e+02 Score=23.36 Aligned_cols=68 Identities=12% Similarity=0.137 Sum_probs=39.2
Q ss_pred CeEEEEeCCHHH----HHHHHHHHHhcCCeEEE---E----CCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhc
Q 029986 18 LRVLVVDDDPIW----LRILEKMLRKCLYEVTK---C----NRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG 86 (184)
Q Consensus 18 ~~Ilivdd~~~~----~~~l~~~L~~~~~~v~~---~----~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~ 86 (184)
-+|.++.++... .+.+...+++.|..+.. + .+....+..++ ...||+|++.... ..+...++++++
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~--~~~~d~v~~~~~~-~~~~~~~~~~~~ 241 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLR--ADPPAVIVVTHFY-PQDQALFMNQFM 241 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHH--HSCCSEEEECCCC-HHHHHHHHHHHT
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHH--hcCCCEEEEcccc-CchHHHHHHHHH
Confidence 467776665543 34445555556776542 1 35566666665 3458999985321 123556777775
Q ss_pred cc
Q 029986 87 LE 88 (184)
Q Consensus 87 ~~ 88 (184)
..
T Consensus 242 ~~ 243 (419)
T 3h5l_A 242 TD 243 (419)
T ss_dssp TS
T ss_pred Hc
Confidence 43
No 291
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=40.76 E-value=74 Score=20.77 Aligned_cols=107 Identities=14% Similarity=0.180 Sum_probs=65.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEE-ECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCC-CE
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTK-CNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDL-PV 93 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~-~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~-~i 93 (184)
+..++.++.+.+. ...+...+...+..+.. +-+.++..+++. . .|++++-.. .+.-|..+++.+. ..+ ||
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~--~--adv~v~ps~-~e~~~~~~~Eama--~G~vPv 102 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEILK--T--CTLYVHAAN-VESEAIACLEAIS--VGIVPV 102 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHHT--T--CSEEEECCC-SCCCCHHHHHHHH--TTCCEE
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHHH--h--CCEEEECCc-ccCccHHHHHHHh--cCCCcE
Confidence 3678888887654 45667777766654443 112455556554 2 688888554 3445667777663 455 77
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
|......... .....| +++..|-+.+++.+.+..++.
T Consensus 103 i~~~~~~~~~---~~~~~~--~~~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 103 IANSPLSATR---QFALDE--RSLFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp EECCTTCGGG---GGCSSG--GGEECTTCHHHHHHHHHHHHH
T ss_pred EeeCCCCchh---hhccCC--ceEEcCCCHHHHHHHHHHHHh
Confidence 7633222121 122222 347788899999999998876
No 292
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=40.75 E-value=52 Score=24.18 Aligned_cols=55 Identities=7% Similarity=-0.019 Sum_probs=42.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhcccC-CCCEEEEEccCChHHHHHHHHcCCCceEeCCC
Q 029986 65 DIVISDVHMPDMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121 (184)
Q Consensus 65 dlvilD~~l~~~~g~~l~~~l~~~~-~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~ 121 (184)
.+|.++. .......++++++++.. ++|+++=..-.+.+.+.++++ ||+..++--.
T Consensus 165 ~~Vyl~~-~G~~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGSa 220 (234)
T 2f6u_A 165 PIIYIEY-SGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNV 220 (234)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHH
T ss_pred CEEEEeC-CCCcchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEEChH
Confidence 7888888 55455578899997665 788877666777888888888 9999886543
No 293
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=40.49 E-value=1.1e+02 Score=23.19 Aligned_cols=68 Identities=10% Similarity=0.060 Sum_probs=44.7
Q ss_pred cEEEE-eCCCCCCCH-HHHHHHhcc-cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 65 DIVIS-DVHMPDMDG-FKLHEQVGL-EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 65 dlvil-D~~l~~~~g-~~l~~~l~~-~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
|.+++ |-++.-..| -+.++..+. .+..||.+-. .+.+.+.+++++|++...+..++++++.++++.+.
T Consensus 170 d~vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv--~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~~ 240 (287)
T 3tqv_A 170 DAYLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEV--TNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIAR 240 (287)
T ss_dssp SSEEECTTTC----CHHHHHHHHHHHCTTSCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHT
T ss_pred cEEEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEe--CCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhhc
Confidence 55555 444332222 234455543 3556776643 45688899999999999999999999999988763
No 294
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=40.36 E-value=58 Score=22.68 Aligned_cols=27 Identities=15% Similarity=-0.020 Sum_probs=13.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVT 45 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~ 45 (184)
+|+|....-.+-..+...|.+.|+.|.
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~ 28 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVL 28 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEE
Confidence 455555544444455555544455544
No 295
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=40.11 E-value=28 Score=25.05 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=34.0
Q ss_pred CccEEEEeCCCCCCC-------HHHHHHHhcccC-----CCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 63 GYDIVISDVHMPDMD-------GFKLHEQVGLEM-----DLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 63 ~~dlvilD~~l~~~~-------g~~l~~~l~~~~-----~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
..|.|+++...|+.. +.+.++.++... +.|+++.. .-+.+.+..++++||+.+..
T Consensus 140 ~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~G-GI~~~n~~~~~~aGad~vvv 206 (230)
T 1rpx_A 140 AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDG-GVGPKNAYKVIEAGANALVA 206 (230)
T ss_dssp TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEES-SCCTTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEEC-CCCHHHHHHHHHcCCCEEEE
Confidence 368888887666443 334445554321 56766554 34466677788889998863
No 296
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=39.90 E-value=1.1e+02 Score=22.27 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=39.4
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCC--CCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHM--PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l--~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
+.++..+... .+.|+|++|... ....-.++++.++.. . +.++..-.+.+....+.+.|++...
T Consensus 90 ~~~~i~~~~~---aGad~I~l~~~~~~~p~~l~~~i~~~~~~-g--~~v~~~v~t~eea~~a~~~Gad~Ig 154 (229)
T 3q58_A 90 YLQDVDALAQ---AGADIIAFDASFRSRPVDIDSLLTRIRLH-G--LLAMADCSTVNEGISCHQKGIEFIG 154 (229)
T ss_dssp SHHHHHHHHH---HTCSEEEEECCSSCCSSCHHHHHHHHHHT-T--CEEEEECSSHHHHHHHHHTTCSEEE
T ss_pred cHHHHHHHHH---cCCCEEEECccccCChHHHHHHHHHHHHC-C--CEEEEecCCHHHHHHHHhCCCCEEE
Confidence 3344444433 458999998864 223455677776542 3 3344455678889999999998553
No 297
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=39.68 E-value=30 Score=26.93 Aligned_cols=71 Identities=23% Similarity=0.311 Sum_probs=48.9
Q ss_pred CCeEEEECCHHHHHHHH-HhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCc
Q 029986 41 LYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACN 115 (184)
Q Consensus 41 ~~~v~~~~~~~~~~~~l-~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~ 115 (184)
.|++-..+. .+++... ...+.+.|+|++- |.+.-+++++.++...++|+..+-.+.+-..++.|.+.|..|
T Consensus 231 tYQmdpaN~-~EAlrE~~~Di~EGAD~vMVK---Pal~YLDIir~vk~~~~~PvaaYqVSGEYAMikaAa~~GwiD 302 (337)
T 1w5q_A 231 TYQMDPANS-DEALHEVAADLAEGADMVMVK---PGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWLA 302 (337)
T ss_dssp GTSBCTTCS-HHHHHHHHHHHHTTCSEEEEE---SCGGGHHHHHHHHHHHCSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred ccCCCCCCh-HHHHHHHHhhHHhCCCEEEEc---CCCchHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHcCCcc
Confidence 455554444 4444443 3335678999986 455667888888766689999987777677777777777766
No 298
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=39.61 E-value=95 Score=22.79 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=37.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCC--hHH----HHHHHHcCCCceE
Q 029986 61 KNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGC--TQD----VMKGVTHGACNYL 117 (184)
Q Consensus 61 ~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~--~~~----~~~a~~~ga~~~l 117 (184)
+.++|+|.+.. .-+++.++++....++|++....-.. .+. +..+++.|++++.
T Consensus 177 ~~Gad~i~~~~----~~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~ 235 (273)
T 2qjg_A 177 ELGADIVKTSY----TGDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVA 235 (273)
T ss_dssp HTTCSEEEECC----CSSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEE
T ss_pred HcCCCEEEECC----CCCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 45689888873 24678888886555789998876542 333 6667789999875
No 299
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=39.52 E-value=1.2e+02 Score=23.73 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCc-eEeCCCC---HH
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACN-YLLKPIR---IK 124 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~-~l~kP~~---~~ 124 (184)
+.++++++++.- ..+++ +++--++ .++..++++....+||+.--.-.+.....++++.|+.| +..|+.. ..
T Consensus 201 ~~~~a~~~~~~l-~~~~i-~iE~P~~---~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit 275 (379)
T 2rdx_A 201 RVDNAIRLARAT-RDLDY-ILEQPCR---SYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLS 275 (379)
T ss_dssp CHHHHHHHHHHT-TTSCC-EEECCSS---SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTTTSHH
T ss_pred CHHHHHHHHHHH-HhCCe-EEeCCcC---CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHH
Confidence 456666665432 22455 6654444 34556666554567776543344567788888888655 4577875 45
Q ss_pred HHHHHHHHHHc
Q 029986 125 ELRNIWQHVAQ 135 (184)
Q Consensus 125 ~l~~~l~~~~~ 135 (184)
+..++...+..
T Consensus 276 ~~~~i~~~A~~ 286 (379)
T 2rdx_A 276 KARRTRDFLID 286 (379)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 300
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=39.44 E-value=1e+02 Score=23.05 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=34.4
Q ss_pred HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe--CCCCHHHHHHHHHHHH
Q 029986 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL--KPIRIKELRNIWQHVA 134 (184)
Q Consensus 79 ~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~--kP~~~~~l~~~l~~~~ 134 (184)
++.++.++...++||+.-----++..+..+...||+..++ .-++.+++...+..+.
T Consensus 102 ~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~ 159 (272)
T 3qja_A 102 LDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTE 159 (272)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHH
Confidence 6667777655678887432222233477888889988875 4445566655555443
No 301
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=39.31 E-value=90 Score=21.29 Aligned_cols=103 Identities=18% Similarity=0.280 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEC---------------CH----HHHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHh
Q 029986 26 DPIWLRILEKMLRKCLYEVTKCN---------------RA----EIALDMLRMSKNGYDIVISDVHMPD-MDGFKLHEQV 85 (184)
Q Consensus 26 ~~~~~~~l~~~L~~~~~~v~~~~---------------~~----~~~~~~l~~~~~~~dlvilD~~l~~-~~g~~l~~~l 85 (184)
+......+...|++.| .|.... +. +..+++++ ..|+||..+.-++ +.++++--..
T Consensus 17 ~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~----~aD~vvA~l~~~d~Gt~~EiG~A~ 91 (152)
T 4fyk_A 17 DQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQ----QADVVVAEVTQPSLGVGYELGRAV 91 (152)
T ss_dssp THHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHH----HCSEEEEECSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHH----HCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4345677788888877 442111 11 12233333 2699999877443 2345544433
Q ss_pred cccCCCCEEEEEccCChHHHHHHHHcCC---CceEeCCCCHHHHHHHHHHHHcC
Q 029986 86 GLEMDLPVIMMSVDGCTQDVMKGVTHGA---CNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 86 ~~~~~~~iIi~~~~~~~~~~~~a~~~ga---~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
..+.||+.+..... .....++-.|. ..|-.+++...+|..++....+.
T Consensus 92 --algkPV~~l~~~~~-~~~ls~mi~G~~~~~~~~~~~Y~~~el~~il~~f~~~ 142 (152)
T 4fyk_A 92 --ALGKPILCLFRPQS-GRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEA 142 (152)
T ss_dssp --HTTCCEEEEECGGG-SCCCCHHHHHHCCSSSEEEEECCTTCHHHHHHHHHC-
T ss_pred --HcCCeEEEEEeCCc-cchhHHHHcCCCCCCeEEEEEecHHHHHHHHHHHHHh
Confidence 24679998876432 11222222233 45888888889999999888664
No 302
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=39.16 E-value=97 Score=23.50 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=38.3
Q ss_pred HHHHhccc-CC-CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 81 LHEQVGLE-MD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 81 l~~~l~~~-~~-~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
.++..++. +. .+|.+- . .+.+.+.+++++|++...+.+++++.+..++..+..
T Consensus 182 av~~ar~~~~~~~~I~VE-V-~tleea~eA~~aGaD~I~LDn~~~e~l~~av~~l~~ 236 (285)
T 1o4u_A 182 AVQEVRKIIPFTTKIEVE-V-ENLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKD 236 (285)
T ss_dssp HHHHHHTTSCTTSCEEEE-E-SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCceEEEE-e-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhc
Confidence 34444433 33 455543 3 357889999999999888999999999998887643
No 303
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=39.11 E-value=65 Score=21.49 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=29.6
Q ss_pred CCCCCeEEEEeCCH-HHHHHHHHHHHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEE
Q 029986 14 FPAGLRVLVVDDDP-IWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVIS 69 (184)
Q Consensus 14 ~~~~~~Ilivdd~~-~~~~~l~~~L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvil 69 (184)
.+..++|.|+|.|. .....+...|. ....+. ...+.+++.+.+... .++.++.
T Consensus 7 ~~~~~~vaVvd~D~s~~s~~l~~~l~-~~~~~~~~~~s~~ea~~~l~~g--~~~~~l~ 61 (156)
T 3cni_A 7 STVGQKVAIVREDTGTIAELAEKALG-NMVDIVYAGSDLKEAEEAVKKE--KAPAIIV 61 (156)
T ss_dssp ----CEEEEEECCCSHHHHHHHHHHH-TSSEEEEEESCHHHHHHHHHHH--TCSEEEE
T ss_pred CCCCCcEEEEECCCCHHHHHHHHHhc-CcEEEEecCCCHHHHHHHHHcC--CeeEEEE
Confidence 34567899998543 34445555665 333322 246888899988843 3565544
No 304
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=38.79 E-value=1.2e+02 Score=24.17 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=38.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc------CCe----EEEECCHHHHHHHHHhcCCCccEEEEeCCC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKC------LYE----VTKCNRAEIALDMLRMSKNGYDIVISDVHM 73 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~------~~~----v~~~~~~~~~~~~l~~~~~~~dlvilD~~l 73 (184)
-+|-+||=|+..-+.-+++|... ... -....|+...++........+|+||+|+.-
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D 294 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 294 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCC
Confidence 47889999999888888876421 111 235677877776554334569999999754
No 305
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=38.68 E-value=63 Score=25.69 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=37.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCe---EE-EECCHHHHHH-HHHhcCCCccEEEEeC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYE---VT-KCNRAEIALD-MLRMSKNGYDIVISDV 71 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~---v~-~~~~~~~~~~-~l~~~~~~~dlvilD~ 71 (184)
-+|..+|-++...+.+++-++..|.. +. ...|..+.+. . ....+|+|++|-
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~---~~~~fD~V~lDP 133 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE---WGFGFDYVDLDP 133 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC---CSSCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh---hCCCCcEEEECC
Confidence 46999999999999999999877653 43 3445554443 2 134599999997
No 306
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=38.34 E-value=23 Score=25.94 Aligned_cols=78 Identities=15% Similarity=0.054 Sum_probs=39.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCHHHHHHHHHhcCCCccEEEEeC-CCCCCCHHHHHHHhcccCCCCE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCL--YEVTKCNRAEIALDMLRMSKNGYDIVISDV-HMPDMDGFKLHEQVGLEMDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~--~~v~~~~~~~~~~~~l~~~~~~~dlvilD~-~l~~~~g~~l~~~l~~~~~~~i 93 (184)
+++++|+-.....+.......+..| .....+.+..+.++.+ ...+|+|++|- ++-+.+-++++..+. ..++||
T Consensus 56 g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i---~~~~dvV~IDEaQFf~~~~v~~l~~la-~~gi~V 131 (219)
T 3e2i_A 56 KQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD---LTNVDVIGIDEVQFFDDEIVSIVEKLS-ADGHRV 131 (219)
T ss_dssp TCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC---CTTCSEEEECCGGGSCTHHHHHHHHHH-HTTCEE
T ss_pred CCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH---hcCCCEEEEechhcCCHHHHHHHHHHH-HCCCEE
Confidence 3556666544444433333344444 3344455544444332 24589999986 444445677777775 467888
Q ss_pred EEEEc
Q 029986 94 IMMSV 98 (184)
Q Consensus 94 Ii~~~ 98 (184)
|+..-
T Consensus 132 i~~GL 136 (219)
T 3e2i_A 132 IVAGL 136 (219)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 87753
No 307
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=38.13 E-value=1.1e+02 Score=24.00 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=38.9
Q ss_pred CeEEEEeCCHH------HHHHHHHHHHhcCCeEEEEC---------CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHH
Q 029986 18 LRVLVVDDDPI------WLRILEKMLRKCLYEVTKCN---------RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLH 82 (184)
Q Consensus 18 ~~Ilivdd~~~------~~~~l~~~L~~~~~~v~~~~---------~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~ 82 (184)
-|++||-|... ..+.+...|+..|+.+..+. +..++.+.++ +..+|+||- +.+++-.+..
T Consensus 34 ~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~--~~~~d~IIa---vGGGsv~D~a 108 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFR--REQCDIIVT---VGGGSPHDCG 108 (387)
T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHH--HTTCCEEEE---EESHHHHHHH
T ss_pred CEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHH--hcCCCEEEE---eCCcchhhHH
Confidence 47898888743 45567777777777665443 2344555555 455798773 2455666666
Q ss_pred HHh
Q 029986 83 EQV 85 (184)
Q Consensus 83 ~~l 85 (184)
+.+
T Consensus 109 K~i 111 (387)
T 3bfj_A 109 KGI 111 (387)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 308
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=37.99 E-value=1.1e+02 Score=22.06 Aligned_cols=94 Identities=16% Similarity=0.131 Sum_probs=50.7
Q ss_pred HHHHhcCC-eEEEECCHHHHHHHHHh-cCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHc
Q 029986 35 KMLRKCLY-EVTKCNRAEIALDMLRM-SKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTH 111 (184)
Q Consensus 35 ~~L~~~~~-~v~~~~~~~~~~~~l~~-~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ 111 (184)
..|...+. -|....+.+++++.... .+.+.+++=+. +...++.+.++.++.. ++. ++-...-...+.+..++++
T Consensus 12 ~~l~~~~ii~vir~~~~~~~~~~~~al~~gGv~~iel~--~k~~~~~~~i~~l~~~~~~l-~vgaGtvl~~d~~~~A~~a 88 (224)
T 1vhc_A 12 EKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEIT--FRSEAAADAIRLLRANRPDF-LIAAGTVLTAEQVVLAKSS 88 (224)
T ss_dssp HHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEE--TTSTTHHHHHHHHHHHCTTC-EEEEESCCSHHHHHHHHHH
T ss_pred HHHHHCCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEe--ccCchHHHHHHHHHHhCcCc-EEeeCcEeeHHHHHHHHHC
Confidence 34444443 23334444544444431 13456765554 4566788888877543 332 2222223346788889999
Q ss_pred CCCceEeCCCCHHHHHHHHHH
Q 029986 112 GACNYLLKPIRIKELRNIWQH 132 (184)
Q Consensus 112 ga~~~l~kP~~~~~l~~~l~~ 132 (184)
||+.. .-|-...++.+..+.
T Consensus 89 GAd~v-~~p~~d~~v~~~ar~ 108 (224)
T 1vhc_A 89 GADFV-VTPGLNPKIVKLCQD 108 (224)
T ss_dssp TCSEE-ECSSCCHHHHHHHHH
T ss_pred CCCEE-EECCCCHHHHHHHHH
Confidence 99844 556555555454444
No 309
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=37.96 E-value=49 Score=24.61 Aligned_cols=77 Identities=10% Similarity=-0.009 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCCccEEE-EeCCCC---CCCHHHHHHHhcccC----CCCEEEEEccCChHHHHHHHHc--CCCceE----
Q 029986 52 IALDMLRMSKNGYDIVI-SDVHMP---DMDGFKLHEQVGLEM----DLPVIMMSVDGCTQDVMKGVTH--GACNYL---- 117 (184)
Q Consensus 52 ~~~~~l~~~~~~~dlvi-lD~~l~---~~~g~~l~~~l~~~~----~~~iIi~~~~~~~~~~~~a~~~--ga~~~l---- 117 (184)
+..+.+. +. ++-++ .|+.-. .+-.+++++.+.... ++|||.=..-.+.+.+.++++. |+++.+
T Consensus 162 e~a~~~~--~~-a~~il~t~i~~dG~~~G~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~a 238 (260)
T 2agk_A 162 DTFRELR--KY-TNEFLIHAADVEGLCGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSS 238 (260)
T ss_dssp HHHHHHT--TT-CSEEEEEC-------CCCCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHHHHH--Hh-cCEEEEEeeccccCcCCCCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCC
Confidence 4444443 34 55444 455332 223478888886554 7899877677778899999887 888754
Q ss_pred ----eCC-CCHHHHHHHHH
Q 029986 118 ----LKP-IRIKELRNIWQ 131 (184)
Q Consensus 118 ----~kP-~~~~~l~~~l~ 131 (184)
..| +...++.+.++
T Consensus 239 l~l~~g~~~~~~~~~~~~~ 257 (260)
T 2agk_A 239 LDIFGGNLVKFEDCCRWNE 257 (260)
T ss_dssp BGGGTCSSBCHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHH
Confidence 244 77777766543
No 310
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=37.66 E-value=1.3e+02 Score=24.37 Aligned_cols=65 Identities=18% Similarity=0.199 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCCC-CHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 51 EIALDMLRMSKNGYDIVISDVHMPDM-DGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 51 ~~~~~~l~~~~~~~dlvilD~~l~~~-~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.+....+. ..++|.+.++...... ..++.++.++.. ++.||++ ..-.+.+.+..+.++|++...+
T Consensus 239 ~~~a~~l~--~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~-g~~~t~e~a~~l~~~G~d~I~v 305 (494)
T 1vrd_A 239 MERVEKLV--KAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVA-GNVATPEGTEALIKAGADAVKV 305 (494)
T ss_dssp HHHHHHHH--HTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHH--HhCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEe-CCcCCHHHHHHHHHcCCCEEEE
Confidence 44444444 3568999998764322 256778888654 4678765 3445677888999999987765
No 311
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=37.64 E-value=29 Score=27.18 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=54.4
Q ss_pred CCeEEEECCHHHHHHHH-HhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHH-----------
Q 029986 41 LYEVTKCNRAEIALDML-RMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKG----------- 108 (184)
Q Consensus 41 ~~~v~~~~~~~~~~~~l-~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a----------- 108 (184)
.|++-..+ ..+++... .....+.|+|++- |.+.-+++++.++...++|+..+-.+.+-..+..|
T Consensus 238 tYQmdpaN-~~EAlrE~~lDi~EGAD~vMVK---Pal~YLDIi~~vk~~~~~PvaaYqVSGEYAMikAAa~~GwiD~~~~ 313 (356)
T 3obk_A 238 TYQMDPSN-SREAEREAEADASEGADMLMVK---PGLPYLDVLAKIREKSKLPMVAYHVSGEYAMLKAAAEKGYISEKDT 313 (356)
T ss_dssp TTSBCTTC-SHHHHHHHHHHHHTTCSEEEEE---SSGGGHHHHHHHHHHCSSCEEEEECHHHHHHHHHHHHHTSSCHHHH
T ss_pred ccCCCCCC-HHHHHHHHHhhHhcCCCEEEec---CCCcHHHHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCccHHHH
Confidence 34554443 34444443 3335678999986 45566788888876778999888655444433333
Q ss_pred --------HHcCCCceEeCCCCHHHHHHHHHHHHcCCCCC
Q 029986 109 --------VTHGACNYLLKPIRIKELRNIWQHVAQQPKPF 140 (184)
Q Consensus 109 --------~~~ga~~~l~kP~~~~~l~~~l~~~~~~~~~~ 140 (184)
..+||+..|+.- ..++.+.++.-.++-+.+
T Consensus 314 v~Esl~~~kRAGAd~IiTYf--A~~~a~~L~~~~~~~~~~ 351 (356)
T 3obk_A 314 VLEVLKSFRRAGADAVATYY--AKEAAKWMVEDMKGTQKF 351 (356)
T ss_dssp HHHHHHHHHHHTCSEEEETT--HHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHcCCCEEehhh--HHHHHHHHHhcchhhhhc
Confidence 355666555532 245555555544444433
No 312
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=37.52 E-value=1e+02 Score=23.16 Aligned_cols=98 Identities=11% Similarity=-0.033 Sum_probs=54.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEE-EEC--CHHHHHHHHHhcCCCccEEEEeCCCC--CCC------HHHHHHHhccc
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVT-KCN--RAEIALDMLRMSKNGYDIVISDVHMP--DMD------GFKLHEQVGLE 88 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~--~~~~~~~~l~~~~~~~dlvilD~~l~--~~~------g~~l~~~l~~~ 88 (184)
+++.|=.......+...+++.|.... .+. +..+-+..+.... .+.|.+=..+. +.. -.++++++++.
T Consensus 129 vIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~--~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~ 206 (271)
T 3nav_A 129 VLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLG--KGYTYLLSRAGVTGAETKANMPVHALLERLQQF 206 (271)
T ss_dssp EEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHC--CSCEEECCCC--------CCHHHHHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHC--CCeEEEEeccCCCCcccCCchhHHHHHHHHHHh
Confidence 44555555556667777777776532 332 2234444443222 33344311111 111 23567777665
Q ss_pred CCCCEEEEEccCChHHHHHHHHcCCCceEeC
Q 029986 89 MDLPVIMMSVDGCTQDVMKGVTHGACNYLLK 119 (184)
Q Consensus 89 ~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~k 119 (184)
.+.|+++=..-.+++.+..++..||++.++-
T Consensus 207 ~~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 207 DAPPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp TCCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred cCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 5788876444556777877999999999874
No 313
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=37.28 E-value=29 Score=26.86 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=46.1
Q ss_pred CHHHHHHHHH-hcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCc
Q 029986 49 RAEIALDMLR-MSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACN 115 (184)
Q Consensus 49 ~~~~~~~~l~-~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~ 115 (184)
+..+++.... ....+.|+|++-- .+.-+++++.++...++|+..+-.+.+-..+..|.+.|..|
T Consensus 224 N~~EAlre~~~Di~EGAD~vMVKP---al~YLDIi~~vk~~~~~P~aaYqVSGEYAMikaAa~~GwiD 288 (323)
T 1l6s_A 224 NRREAIRESLLDEAQGADCLMVKP---AGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAID 288 (323)
T ss_dssp CHHHHHHHHHHHHHTTCSBEEEES---CTTCHHHHHHHHTTCSSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHhhHHhCCceEEEec---CcchhHHHHHHHHhcCCCeEEEEcCcHHHHHHHHHHcCCcc
Confidence 5566665553 2346689999874 45557888888777789999987777677777777777654
No 314
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=37.20 E-value=1.4e+02 Score=23.04 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=38.2
Q ss_pred HHHHhcc-cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 81 LHEQVGL-EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 81 l~~~l~~-~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
.++..+. .+..+|.+-.. +.+.+..++++|++...+...+.+++.++++.+
T Consensus 221 Av~~ar~~~p~~kIeVEVd--tldea~eAl~aGaD~I~LDn~~~~~l~~av~~l 272 (320)
T 3paj_A 221 AISTAKQLNPGKPVEVETE--TLAELEEAISAGADIIMLDNFSLEMMREAVKIN 272 (320)
T ss_dssp HHHHHHHHSTTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 3444432 35667776553 457888999999999989999999999988765
No 315
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=37.18 E-value=11 Score=26.72 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=37.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeE--EEECCHHHHHHHHHhcCCCccEEEEeC-CCCCCCHHHHHHHhcccCCCCE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEV--TKCNRAEIALDMLRMSKNGYDIVISDV-HMPDMDGFKLHEQVGLEMDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v--~~~~~~~~~~~~l~~~~~~~dlvilD~-~l~~~~g~~l~~~l~~~~~~~i 93 (184)
+++|+++-.....+.......+..|..+ ..+.+..+.++.+. ..+|+|++|- +.-+.+-+++++.+.. .+.+|
T Consensus 36 g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~---~~~dvViIDEaqfl~~~~v~~l~~l~~-~~~~V 111 (191)
T 1xx6_A 36 KQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE---EDTEVIAIDEVQFFDDEIVEIVNKIAE-SGRRV 111 (191)
T ss_dssp TCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC---TTCSEEEECSGGGSCTHHHHHHHHHHH-TTCEE
T ss_pred CCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHh---ccCCEEEEECCCCCCHHHHHHHHHHHh-CCCEE
Confidence 5677777522222212111222334332 23444455554432 3489999984 2222344666776643 36777
Q ss_pred EEEE
Q 029986 94 IMMS 97 (184)
Q Consensus 94 Ii~~ 97 (184)
|+..
T Consensus 112 i~~G 115 (191)
T 1xx6_A 112 ICAG 115 (191)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7764
No 316
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=37.15 E-value=17 Score=26.96 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCeEEEECCHHHH-------HHHHHhcCCCccEEEEeCCCCC---------------CCHHHHHHHhcccC
Q 029986 32 ILEKMLRKCLYEVTKCNRAEIA-------LDMLRMSKNGYDIVISDVHMPD---------------MDGFKLHEQVGLEM 89 (184)
Q Consensus 32 ~l~~~L~~~~~~v~~~~~~~~~-------~~~l~~~~~~~dlvilD~~l~~---------------~~g~~l~~~l~~~~ 89 (184)
.+.+.|+..++++..... .+. .+.+. .+|+||++-.-.. .+-.+.++..-. .
T Consensus 44 ~l~~aL~~~~~~v~~~~~-~~~~~~fp~~~~~L~----~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~-~ 117 (256)
T 2gk3_A 44 WLLECLRKGGVDIDYMPA-HTVQIAFPESIDELN----RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVK-N 117 (256)
T ss_dssp HHHHHHHHTTCEEEEECH-HHHHHCCCCSHHHHH----TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHH-T
T ss_pred HHHHHHHhcCceEEEEec-ccchhhCCcChhHHh----cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHH-h
Confidence 456666667888887642 111 12232 3899998632110 233444554422 2
Q ss_pred CCCEEEEEcc
Q 029986 90 DLPVIMMSVD 99 (184)
Q Consensus 90 ~~~iIi~~~~ 99 (184)
...++++...
T Consensus 118 GGgll~igG~ 127 (256)
T 2gk3_A 118 GGGLLMIGGY 127 (256)
T ss_dssp TCEEEEECST
T ss_pred CCEEEEECCh
Confidence 5677777654
No 317
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=37.13 E-value=1.4e+02 Score=22.87 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=36.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCe---E-EEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYE---V-TKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~---v-~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
+|.-+|-++...+..+.-+...+.. + ....+..+.+.........+|+|++|.
T Consensus 177 ~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 177 EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 7999999999998888877765532 3 345566665543321135699999985
No 318
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=37.13 E-value=78 Score=24.68 Aligned_cols=55 Identities=11% Similarity=-0.066 Sum_probs=37.2
Q ss_pred CccEEEEeCCCCCC-CHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 63 GYDIVISDVHMPDM-DGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 63 ~~dlvilD~~l~~~-~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.+|++.++...... ..++.+++++.. +++|+++ ..-.+.+.+..+.++|++...+
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~-g~v~t~e~A~~a~~aGaD~I~v 188 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMA-GNVVTGEMVEELILSGADIIKV 188 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEE-EeCCCHHHHHHHHHhCCCEEEE
Confidence 57888888654322 246678887654 3677764 3334578899999999987644
No 319
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=37.07 E-value=60 Score=22.50 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=25.8
Q ss_pred CCeEEEEeCCH--HHHHHHHHHHHhcCCeEEEEC
Q 029986 17 GLRVLVVDDDP--IWLRILEKMLRKCLYEVTKCN 48 (184)
Q Consensus 17 ~~~Ilivdd~~--~~~~~l~~~L~~~~~~v~~~~ 48 (184)
+|||.|.-|+. ...+.|..+|+..|++|.-+.
T Consensus 3 ~MkIaigsDhaG~~lK~~i~~~L~~~G~eV~D~G 36 (162)
T 2vvp_A 3 GMRVYLGADHAGYELKQRIIEHLKQTGHEPIDCG 36 (162)
T ss_dssp CCEEEEEECHHHHHHHHHHHHHHHHTTCEEEECS
T ss_pred CCEEEEEeCchhHHHHHHHHHHHHHCCCEEEEeC
Confidence 37899888887 467789999999999987654
No 320
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=37.05 E-value=70 Score=24.64 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=37.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-CCeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC-LYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~-~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~ 75 (184)
+.+|..||=++...+.-++.+... +-.+ ....++.+.+.... ...+|+||+|...+.
T Consensus 113 ~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~--~~~fDvIi~D~~~~~ 171 (317)
T 3gjy_A 113 QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFT--PASRDVIIRDVFAGA 171 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCC--TTCEEEEEECCSTTS
T ss_pred CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhcc--CCCCCEEEECCCCcc
Confidence 458999999999888888777532 1222 34666665543221 356999999976553
No 321
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=36.68 E-value=1.5e+02 Score=23.06 Aligned_cols=54 Identities=24% Similarity=0.119 Sum_probs=38.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCe--EEEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYE--VTKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~--v~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
.+|.-+|-++...+..+.-+...+.. .....+..+.+..+......+|+|++|.
T Consensus 232 ~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 232 REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 47999999999998888888766542 3456677766554432235699999985
No 322
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=36.47 E-value=1.7e+02 Score=23.70 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=44.6
Q ss_pred EEECCHHHHHHHHHhcCCCccEEEEeCCCC-----------CCCHHHHHHHhc---ccCCCCEEEEEccCChHHHHHHHH
Q 029986 45 TKCNRAEIALDMLRMSKNGYDIVISDVHMP-----------DMDGFKLHEQVG---LEMDLPVIMMSVDGCTQDVMKGVT 110 (184)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~dlvilD~~l~-----------~~~g~~l~~~l~---~~~~~~iIi~~~~~~~~~~~~a~~ 110 (184)
....+.+++..+.. .++|.|.+...-. +......+..+. ...++|||.-..-.+...+.+++.
T Consensus 284 g~~~t~e~a~~l~~---~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala 360 (494)
T 1vrd_A 284 GNVATPEGTEALIK---AGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALA 360 (494)
T ss_dssp EEECSHHHHHHHHH---TTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHH
T ss_pred CCcCCHHHHHHHHH---cCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHH
Confidence 34566777755543 4588888843211 112334444442 224789988877778899999999
Q ss_pred cCCCceE
Q 029986 111 HGACNYL 117 (184)
Q Consensus 111 ~ga~~~l 117 (184)
.||+...
T Consensus 361 ~GAd~V~ 367 (494)
T 1vrd_A 361 AGAESVM 367 (494)
T ss_dssp TTCSEEE
T ss_pred cCCCEEE
Confidence 9998765
No 323
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=36.46 E-value=60 Score=22.17 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=25.1
Q ss_pred CeEEEEeCCH--HHHHHHHHHHHhcCCeEEEE
Q 029986 18 LRVLVVDDDP--IWLRILEKMLRKCLYEVTKC 47 (184)
Q Consensus 18 ~~Ilivdd~~--~~~~~l~~~L~~~~~~v~~~ 47 (184)
|||.|--|+. .+.+.|..+|++.|++|.-+
T Consensus 1 MkI~igsDhaG~~lK~~i~~~L~~~G~eV~D~ 32 (149)
T 3he8_A 1 MKIGIGSDHGGYNLKREIADFLKKRGYEVIDF 32 (149)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTTCEEEEC
T ss_pred CEEEEEECchhHHHHHHHHHHHHHCCCEEEEc
Confidence 5788888886 67788999999999998755
No 324
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=36.35 E-value=1.6e+02 Score=23.28 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=38.0
Q ss_pred CeEEEEeCCH-H----HHHHHHHHHHhcCCeEEEEC---------CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHH
Q 029986 18 LRVLVVDDDP-I----WLRILEKMLRKCLYEVTKCN---------RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHE 83 (184)
Q Consensus 18 ~~Ilivdd~~-~----~~~~l~~~L~~~~~~v~~~~---------~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~ 83 (184)
-|++||-|.. . ..+.+...|++.|+.+..+. +..++.+.++ +..+|+||- +.+++-++..+
T Consensus 44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~--~~~~D~IIa---vGGGsviD~AK 118 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAK--KEKVEAVLG---VGGGSVVDSAK 118 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHH--HTTCSEEEE---EESHHHHHHHH
T ss_pred CeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHH--hcCCCEEEE---eCChhHHHHHH
Confidence 4788888743 2 34556677777777765554 2344455554 455898873 24556666666
Q ss_pred Hh
Q 029986 84 QV 85 (184)
Q Consensus 84 ~l 85 (184)
.+
T Consensus 119 ~i 120 (407)
T 1vlj_A 119 AV 120 (407)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 325
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=36.22 E-value=73 Score=22.07 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=42.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCH---HHHHHHHHhcCCCccEEEEeCCC-CCC--CHHHHHHHhcccCCC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRA---EIALDMLRMSKNGYDIVISDVHM-PDM--DGFKLHEQVGLEMDL 91 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~---~~~~~~l~~~~~~~dlvilD~~l-~~~--~g~~l~~~l~~~~~~ 91 (184)
++|+|+|.-......+.+.|++.|+.+...... ++..+.+.. ...+++||..-.. +.. ...++++.+ ....
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~-~~~~~iil~gGpg~~~~~~~~~~l~~~~--~~~~ 77 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLAT-MKNPVLMLSPGPGVPSEAGCMPELLTRL--RGKL 77 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTT-CSSEEEEECCCSSCGGGSTTHHHHHHHH--BTTB
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhh-ccCCeEEECCCCcCchhCchHHHHHHHH--hcCC
Confidence 379999955556777888999889887766544 333343321 1234566553211 111 123344443 2457
Q ss_pred CEEEE
Q 029986 92 PVIMM 96 (184)
Q Consensus 92 ~iIi~ 96 (184)
|++-+
T Consensus 78 PilGI 82 (192)
T 1i1q_B 78 PIIGI 82 (192)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88765
No 326
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=35.77 E-value=71 Score=24.26 Aligned_cols=69 Identities=14% Similarity=0.018 Sum_probs=42.5
Q ss_pred EEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 44 VTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 44 v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
...+.+.+++.+.+. .++|+|.+|-. +-..--+.++.++. .+.++ +..+..-+.+.+....+.|++.+-
T Consensus 197 ~VEV~tleea~eA~~---aGaD~I~LDn~-~~e~l~~av~~l~~~~~~v~-ieASGGIt~eni~~~a~tGVD~Is 266 (285)
T 1o4u_A 197 EVEVENLEDALRAVE---AGADIVMLDNL-SPEEVKDISRRIKDINPNVI-VEVSGGITEENVSLYDFETVDVIS 266 (285)
T ss_dssp EEEESSHHHHHHHHH---TTCSEEEEESC-CHHHHHHHHHHHHHHCTTSE-EEEEECCCTTTGGGGCCTTCCEEE
T ss_pred EEEeCCHHHHHHHHH---cCCCEEEECCC-CHHHHHHHHHHhhccCCCce-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 346778888888876 45899999973 22111223333332 23444 444555667777788888988664
No 327
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=35.72 E-value=69 Score=23.17 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=40.9
Q ss_pred CCeEEEEeCC------HHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhc
Q 029986 17 GLRVLVVDDD------PIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG 86 (184)
Q Consensus 17 ~~~Ilivdd~------~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~ 86 (184)
.-+|++++-. ......+.+.|++.|+++.......+..+.+. + .|.|++ |+++-..+.+.++
T Consensus 31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~--~--ad~I~l----pGG~~~~~~~~l~ 98 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE--K--AEIIIV----GGGNTFQLLKESR 98 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH--H--CSEEEE----CCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh--c--CCEEEE----CCCcHHHHHHHHH
Confidence 4589999744 25667778889988998877742222334444 2 588887 5777777666663
No 328
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=35.70 E-value=1.5e+02 Score=23.48 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=53.4
Q ss_pred CCCeEEEEeCCHHHHHH--HHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCC--CCCC-----CHHHHHHHhc
Q 029986 16 AGLRVLVVDDDPIWLRI--LEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH--MPDM-----DGFKLHEQVG 86 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~--l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~--l~~~-----~g~~l~~~l~ 86 (184)
...+|++.|..|...-. +...|.+.|..+....+..-+.-+ . ....|.||+... ..++ -|--.+..+.
T Consensus 206 k~~~V~v~EtRP~~qG~rltA~eL~~~GIpvtlI~Dsa~~~~M-~--~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~A 282 (374)
T 2yvk_A 206 LGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTM-K--EKQISAVIVGADRIAKNGDTANKIGTYGLAILA 282 (374)
T ss_dssp CCCEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHH-H--HTTCCEEEECCSEEETTCCEEEETTHHHHHHHH
T ss_pred CEEEEEEeCCCCccccHHHHHHHHHHcCCCEEEEehhHHHHHh-h--hcCCCEEEECccEEecCCCEEecccHHHHHHHH
Confidence 46789999988876542 467788889999888765444433 3 244899998553 2332 2444455555
Q ss_pred ccCCCCEEEEEcc
Q 029986 87 LEMDLPVIMMSVD 99 (184)
Q Consensus 87 ~~~~~~iIi~~~~ 99 (184)
+..++|+++.+..
T Consensus 283 k~~~vPfyV~ap~ 295 (374)
T 2yvk_A 283 NAFDIPFFVAAPL 295 (374)
T ss_dssp HHTTCCEEEECCG
T ss_pred HHcCCCEEEeccc
Confidence 5678999988643
No 329
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=35.59 E-value=45 Score=24.12 Aligned_cols=39 Identities=10% Similarity=-0.019 Sum_probs=32.2
Q ss_pred HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 79 ~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
++.++.++ ..++|+++...-.+.+.+..+++.||+..+.
T Consensus 63 ~~~i~~i~-~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~l 101 (241)
T 1qo2_A 63 LPVLEKLS-EFAEHIQIGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_dssp HHHHHHGG-GGGGGEEEESSCCSHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHH-hcCCcEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 67788887 6678999888777788899999999988765
No 330
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=35.59 E-value=39 Score=23.41 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=43.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCC-CCCCCH--HHHHHHhcccCCCCEEE
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH-MPDMDG--FKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~-l~~~~g--~~l~~~l~~~~~~~iIi 95 (184)
.|+|+|-.......+.+.|++.|..+..+.... ..+.+. ...+|.+++-=. -+...+ .++++... ..+.|++-
T Consensus 2 mi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~--~~~~dglil~Gg~~~~~~~~~~~~i~~~~-~~~~PilG 77 (189)
T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIK--AMNPKGIIFSGGPSLENTGNCEKVLEHYD-EFNVPILG 77 (189)
T ss_dssp EEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHH--HTCCSEEEECCCSCTTCCTTHHHHHHTGG-GTCSCEEE
T ss_pred eEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhc--ccCCCEEEECCCCChhhhhhHHHHHHHHh-hCCCeEEE
Confidence 388999777677788899998888777665433 122222 134788887332 122122 33343221 34678876
Q ss_pred E
Q 029986 96 M 96 (184)
Q Consensus 96 ~ 96 (184)
+
T Consensus 78 I 78 (189)
T 1wl8_A 78 I 78 (189)
T ss_dssp E
T ss_pred E
Confidence 6
No 331
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=35.38 E-value=94 Score=23.83 Aligned_cols=49 Identities=8% Similarity=0.197 Sum_probs=33.8
Q ss_pred CCCCEEEEEccC--ChHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHcCC
Q 029986 89 MDLPVIMMSVDG--CTQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQQP 137 (184)
Q Consensus 89 ~~~~iIi~~~~~--~~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~~~ 137 (184)
+++-+|+++++. ..+.+..|+++|-+=|+-||+ +.++..+.+..+.+..
T Consensus 93 ~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 145 (393)
T 4fb5_A 93 PEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAERSG 145 (393)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSS
T ss_pred CCCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHhcC
Confidence 445555554433 346788999999999999998 5667777777665543
No 332
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=35.21 E-value=1.6e+02 Score=22.99 Aligned_cols=85 Identities=18% Similarity=0.085 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCeEE--EECCHHHHHHHHHhcCCCccEEEEeCCCC-----CCCHHHHHHHhccc--CCCCEEEEEccCC
Q 029986 31 RILEKMLRKCLYEVT--KCNRAEIALDMLRMSKNGYDIVISDVHMP-----DMDGFKLHEQVGLE--MDLPVIMMSVDGC 101 (184)
Q Consensus 31 ~~l~~~L~~~~~~v~--~~~~~~~~~~~l~~~~~~~dlvilD~~l~-----~~~g~~l~~~l~~~--~~~~iIi~~~~~~ 101 (184)
+.+...-+..+..+. ...+.+++..... .++|.|.+..+-. ....++.+..++.. .++|||.-..-.+
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~---~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~ 291 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQ---HGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRR 291 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHH---TTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCS
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHH---cCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 334444444444333 4566777766554 4689888843211 12356667666432 2689998888778
Q ss_pred hHHHHHHHHcCCCceEe
Q 029986 102 TQDVMKGVTHGACNYLL 118 (184)
Q Consensus 102 ~~~~~~a~~~ga~~~l~ 118 (184)
...+.+++..||+....
T Consensus 292 ~~D~~k~l~~GAdaV~i 308 (370)
T 1gox_A 292 GTDVFKALALGAAGVFI 308 (370)
T ss_dssp HHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCCEEee
Confidence 88999999999988764
No 333
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=35.00 E-value=1.5e+02 Score=22.57 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=55.8
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEeCCCC--CC-CHHHHHHHhcccCCCCEEEEEccCCh-------------HHHHHHH
Q 029986 46 KCNRAEIALDMLRMSKNGYDIVISDVHMP--DM-DGFKLHEQVGLEMDLPVIMMSVDGCT-------------QDVMKGV 109 (184)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~dlvilD~~l~--~~-~g~~l~~~l~~~~~~~iIi~~~~~~~-------------~~~~~a~ 109 (184)
.+.+.+++...... +.|-|=+...+. +. -+..+++.+++..++||.++.-+... ..+..+.
T Consensus 45 c~~s~~~a~~A~~g---GAdRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~ 121 (287)
T 3iwp_A 45 CVDSVESAVNAERG---GADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAK 121 (287)
T ss_dssp EESSHHHHHHHHHH---TCSEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHh---CCCEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHH
Confidence 36678888887753 345554444433 22 35778888866667998888655544 4777889
Q ss_pred HcCCCceEeCC------CCHHHHHHHHHHH
Q 029986 110 THGACNYLLKP------IRIKELRNIWQHV 133 (184)
Q Consensus 110 ~~ga~~~l~kP------~~~~~l~~~l~~~ 133 (184)
++||++++.-- ++.+.+.+.+...
T Consensus 122 ~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a 151 (287)
T 3iwp_A 122 LYGADGLVFGALTEDGHIDKELCMSLMAIC 151 (287)
T ss_dssp HTTCSEEEECCBCTTSCBCHHHHHHHHHHH
T ss_pred HcCCCEEEEeeeCCCCCcCHHHHHHHHHHc
Confidence 99999998663 3455666666654
No 334
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=34.66 E-value=77 Score=23.45 Aligned_cols=84 Identities=8% Similarity=-0.052 Sum_probs=50.1
Q ss_pred HHHHHHHH---hcCCeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCCC--CCHHHHHHHhcc-cC----CCCEEEEEcc
Q 029986 31 RILEKMLR---KCLYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPD--MDGFKLHEQVGL-EM----DLPVIMMSVD 99 (184)
Q Consensus 31 ~~l~~~L~---~~~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~--~~g~~l~~~l~~-~~----~~~iIi~~~~ 99 (184)
..+..++. ..|..+ ..+++.++....+.. .+|++=+...... ..+++....+.. .+ ++|+|..+.-
T Consensus 141 ~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~---gad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI 217 (254)
T 1vc4_A 141 ELTGAYLEEARRLGLEALVEVHTERELEIALEA---GAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGY 217 (254)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHH---TCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc---CCCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCC
Confidence 44555554 457654 467788887766542 3577655332211 112333444421 12 5677777666
Q ss_pred CChHHHHHHHHcCCCceEe
Q 029986 100 GCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 100 ~~~~~~~~a~~~ga~~~l~ 118 (184)
.+.+.+..+.+ |++++++
T Consensus 218 ~s~~dv~~l~~-Ga~gvlV 235 (254)
T 1vc4_A 218 SRKEELKALEG-LFDAVLI 235 (254)
T ss_dssp CSHHHHHTTTT-TCSEEEE
T ss_pred CCHHHHHHHHc-CCCEEEE
Confidence 67889999999 9999975
No 335
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=34.57 E-value=1.5e+02 Score=22.43 Aligned_cols=93 Identities=11% Similarity=-0.030 Sum_probs=54.8
Q ss_pred EEEEeCCHHHHHHHHHHHH----hcC--CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCC
Q 029986 20 VLVVDDDPIWLRILEKMLR----KCL--YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLP 92 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~----~~~--~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~ 92 (184)
++|-|++-.....+...++ ..+ -....+.+.+++.+.+. .++|+|.+|-.-| .+--+.++.++. .++ .
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~---aGaD~I~LDn~~~-~~~~~~v~~l~~~~~~-v 242 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLP---EKPELILLDNFAV-WQTQTAVQRRDSRAPT-V 242 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGG---GCCSEEEEETCCH-HHHHHHHHHHHHHCTT-C
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH---cCCCEEEECCCCH-HHHHHHHHHhhccCCC-e
Confidence 6666655433222333332 223 23446778888888775 4589999997322 222233444432 223 3
Q ss_pred EEEEEccCChHHHHHHHHcCCCceE
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
.+..+..-+.+.+....+.|++.+.
T Consensus 243 ~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 243 MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 5556677778888899999998665
No 336
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=34.24 E-value=98 Score=23.24 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=37.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCC--hH--HHHHHHHcCCCceEeCCCC--HHHHHHHHHHH
Q 029986 65 DIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGC--TQ--DVMKGVTHGACNYLLKPIR--IKELRNIWQHV 133 (184)
Q Consensus 65 dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~--~~--~~~~a~~~ga~~~l~kP~~--~~~l~~~l~~~ 133 (184)
|++++-. + |..+++.+. ..+|+|....... .+ ......+.|. +++..|-+ .++|.+.+..+
T Consensus 256 d~~v~~s----g-~~~~~EAma--~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 256 DVVVCRS----G-ALTVSEIAA--AGLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp SEEEECC----C-HHHHHHHHH--HTCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred CEEEECC----c-hHHHHHHHH--hCCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 5666532 2 666666653 3578887643321 11 1334566777 89998855 88888887654
No 337
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=33.79 E-value=81 Score=23.51 Aligned_cols=118 Identities=11% Similarity=0.046 Sum_probs=57.4
Q ss_pred cCCCCCeEEEEeCCH-----HHHHHHHHHHHhcCCeEEEE--CCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHh
Q 029986 13 QFPAGLRVLVVDDDP-----IWLRILEKMLRKCLYEVTKC--NRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 13 ~~~~~~~Ilivdd~~-----~~~~~l~~~L~~~~~~v~~~--~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
.+|..-+|.++-+.. ...+.++......|+++... .+..+....+.......|++++...-.-.+..+.+..+
T Consensus 136 l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~~~~~~~~~i~~~ 215 (302)
T 3lkv_A 136 ILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTVASAIEGMIVA 215 (302)
T ss_dssp HSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSCHHHHHTHHHHHHH
T ss_pred hCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCCcchhhHHHHHHHH
Confidence 355566787776543 23445566666678776532 33333333332212447999885421111223333334
Q ss_pred cccCCCCEEEEEccCChHHHHHHHHcCCC-ceEeCCCCHH-HHHHHHHHHHcCCC
Q 029986 86 GLEMDLPVIMMSVDGCTQDVMKGVTHGAC-NYLLKPIRIK-ELRNIWQHVAQQPK 138 (184)
Q Consensus 86 ~~~~~~~iIi~~~~~~~~~~~~a~~~ga~-~~l~kP~~~~-~l~~~l~~~~~~~~ 138 (184)
.....+|++-. ... ..+.|+. .|...+.... +-.+...+++++..
T Consensus 216 ~~~~~iPv~~~----~~~----~v~~G~l~~~~~~~~~~G~~aa~~a~~IL~G~~ 262 (302)
T 3lkv_A 216 ANQAKTPVFGA----ATS----YVERGAIASLGFDYYQIGVQTADYVAAILEGKE 262 (302)
T ss_dssp HHHTTCCEEES----SHH----HHHTTCSEEEECCHHHHHHHHHHHHHHHHTTCC
T ss_pred HhhcCCceeec----ccc----cccCCceEEEecCHHHHHHHHHHHHHHHHCcCC
Confidence 34457787632 122 3455664 3444333222 22445566776643
No 338
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=33.71 E-value=1.5e+02 Score=23.31 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCCccEEEEeCCC------CCC-C-----HHHHHHHhcccCCCCEEEE--EccCChHHHHHHHHcCCCc
Q 029986 50 AEIALDMLRMSKNGYDIVISDVHM------PDM-D-----GFKLHEQVGLEMDLPVIMM--SVDGCTQDVMKGVTHGACN 115 (184)
Q Consensus 50 ~~~~~~~l~~~~~~~dlvilD~~l------~~~-~-----g~~l~~~l~~~~~~~iIi~--~~~~~~~~~~~a~~~ga~~ 115 (184)
.+.+.+.+... ..|.+.++++. |.+ . ..+.++.++...+.||++= ....+.+.+..+.++|++.
T Consensus 137 ~~~~~~av~~~--~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~ 214 (368)
T 3vkj_A 137 LKEFQDAIQMI--EADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKN 214 (368)
T ss_dssp HHHHHHHHHHT--TCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHh--cCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCE
Confidence 45555544422 35777777643 221 1 5778888876667898773 2223578899999999998
Q ss_pred eEe
Q 029986 116 YLL 118 (184)
Q Consensus 116 ~l~ 118 (184)
..+
T Consensus 215 I~V 217 (368)
T 3vkj_A 215 FDT 217 (368)
T ss_dssp EEC
T ss_pred EEE
Confidence 876
No 339
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=33.69 E-value=1.6e+02 Score=22.66 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=29.6
Q ss_pred HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCce
Q 029986 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 79 ~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
.++++.+++..++|||....-.+.+.+.++++.|..|+
T Consensus 266 ~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~ 303 (340)
T 3gr7_A 266 VPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADL 303 (340)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSE
T ss_pred HHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeE
Confidence 57788887666799988776667889999999994444
No 340
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=33.68 E-value=2.5e+02 Score=24.73 Aligned_cols=108 Identities=9% Similarity=0.108 Sum_probs=68.9
Q ss_pred CCeEEEEeCCH----------HHHHHHHHHHHhcCC--eEEEEC---CH---HHHHHHHHhcCCCccEEEEeCCCCCCCH
Q 029986 17 GLRVLVVDDDP----------IWLRILEKMLRKCLY--EVTKCN---RA---EIALDMLRMSKNGYDIVISDVHMPDMDG 78 (184)
Q Consensus 17 ~~~Ilivdd~~----------~~~~~l~~~L~~~~~--~v~~~~---~~---~~~~~~l~~~~~~~dlvilD~~l~~~~g 78 (184)
..+++|+.+.+ ...+.+....++.+. .|.... +. ++....+.. ..|++++-.. .+.-|
T Consensus 603 ~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~---aaDvfV~PS~-~Egfg 678 (816)
T 3s28_A 603 LANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICD---TKGAFVQPAL-YEAFG 678 (816)
T ss_dssp HCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHH---TTCEEEECCS-CBSSC
T ss_pred CeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHh---cCeEEEECCC-ccCcc
Confidence 35778887766 255667777776653 344433 22 444444431 2478777543 34556
Q ss_pred HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 79 ~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
..+++.+. ..+|||.. . .....+.+..|..+++..|.+.+++.+++..++
T Consensus 679 lvllEAMA--~G~PVIas-d---~GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL 728 (816)
T 3s28_A 679 LTVVEAMT--CGLPTFAT-C---KGGPAEIIVHGKSGFHIDPYHGDQAADTLADFF 728 (816)
T ss_dssp HHHHHHHH--TTCCEEEE-S---SBTHHHHCCBTTTBEEECTTSHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCEEEe-C---CCChHHHHccCCcEEEeCCCCHHHHHHHHHHHH
Confidence 67777663 46888864 2 233445567788999999999999999987665
No 341
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=33.65 E-value=1.5e+02 Score=23.86 Aligned_cols=54 Identities=22% Similarity=0.181 Sum_probs=30.5
Q ss_pred CCCeEEEEeCCHH---HHHHHHHHHHhcCCeEEEECC---HHH----HHHHHHhcCCCccEEEEeC
Q 029986 16 AGLRVLVVDDDPI---WLRILEKMLRKCLYEVTKCNR---AEI----ALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 16 ~~~~Ilivdd~~~---~~~~l~~~L~~~~~~v~~~~~---~~~----~~~~l~~~~~~~dlvilD~ 71 (184)
.+.+|++++-|.. ..+.+...-...+..+..... ..+ +++.+. ...+|+||+|.
T Consensus 125 ~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~--~~~~DvVIIDT 188 (425)
T 2ffh_A 125 KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR--LEARDLILVDT 188 (425)
T ss_dssp TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH--HTTCSEEEEEC
T ss_pred cCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHH--HCCCCEEEEcC
Confidence 3568999997743 333344433344666665432 222 333332 25689999997
No 342
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=33.63 E-value=1.5e+02 Score=23.19 Aligned_cols=53 Identities=15% Similarity=-0.014 Sum_probs=37.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCe----EEEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYE----VTKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~----v~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
+|.-+|-++...+..+.-++..+.. -....+..+.+..+......+|+|++|-
T Consensus 237 ~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DP 293 (385)
T 2b78_A 237 ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 293 (385)
T ss_dssp EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECC
Confidence 7999999999888888877766542 3456677776654432234699999985
No 343
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=33.62 E-value=1.2e+02 Score=21.00 Aligned_cols=64 Identities=14% Similarity=-0.060 Sum_probs=42.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCC-eEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHh
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLY-EVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~-~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
+|.-+|-++...+..+..+...+. .+. ...+..+.+ ......+|+|++|.-.......++++.+
T Consensus 79 ~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~---~~~~~~fD~V~~~~p~~~~~~~~~l~~l 144 (202)
T 2fpo_A 79 GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL---AQKGTPHNIVFVDPPFRRGLLEETINLL 144 (202)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH---SSCCCCEEEEEECCSSSTTTHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH---hhcCCCCCEEEECCCCCCCcHHHHHHHH
Confidence 799999999999998888877664 333 344544432 2123469999998653344455566665
No 344
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=33.39 E-value=1.3e+02 Score=21.55 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=45.8
Q ss_pred ccCCCCCeEEEEeCCHHHHHHHHHHHHhcCCe--E-EEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHh
Q 029986 12 DQFPAGLRVLVVDDDPIWLRILEKMLRKCLYE--V-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 12 ~~~~~~~~Ilivdd~~~~~~~l~~~L~~~~~~--v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
...|++.+|..+|-++...+..+..+...|.. + ....+..+.+..+. ....+|+|++|.. ..+-..+++.+
T Consensus 83 ~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~-~~~~fD~V~~d~~--~~~~~~~l~~~ 156 (248)
T 3tfw_A 83 RELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG-ECPAFDLIFIDAD--KPNNPHYLRWA 156 (248)
T ss_dssp TTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC-SCCCCSEEEECSC--GGGHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC-CCCCeEEEEECCc--hHHHHHHHHHH
Confidence 34444668999999999999988888876542 3 34566655444321 1236999999874 22333455554
No 345
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=33.38 E-value=1.2e+02 Score=23.29 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=37.7
Q ss_pred HHHHhcc-cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 81 LHEQVGL-EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 81 l~~~l~~-~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
.++..+. .+..+|.+-. .+.+.+.+++++|++...+...+.+++.++++.+
T Consensus 199 Av~~~r~~~p~~~ieVEv--dtlde~~eAl~aGaD~I~LDn~~~~~l~~av~~i 250 (298)
T 3gnn_A 199 ALDAAFALNAEVPVQIEV--ETLDQLRTALAHGARSVLLDNFTLDMMRDAVRVT 250 (298)
T ss_dssp HHHHHHHHC--CCCEEEE--SSHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEe--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4444543 3556766654 3457788999999999999999999999999876
No 346
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=33.32 E-value=1.4e+02 Score=24.64 Aligned_cols=92 Identities=20% Similarity=0.063 Sum_probs=44.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-CCeEEEEC-CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC-LYEVTKCN-RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~-~~~v~~~~-~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iI 94 (184)
+..|+++|.++...+.+. .. ++.+.... ...+.++.+. -...+.+++ . ..+......+..++.....+++
T Consensus 150 ~~~vvvid~~~~~~~~~~----~~~~~~~i~Gd~~~~~~L~~a~--i~~a~~vi~-t-~~D~~n~~~~~~ar~~~~~~ii 221 (565)
T 4gx0_A 150 NHLFVVVTDNYDQALHLE----EQEGFKVVYGSPTDAHVLAGLR--VAAARSIIA-N-LSDPDNANLCLTVRSLCQTPII 221 (565)
T ss_dssp TCCEEEEESCHHHHHHHH----HSCSSEEEESCTTCHHHHHHTT--GGGCSEEEE-C-SCHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCEEEEECCHHHHHHHH----HhcCCeEEEeCCCCHHHHHhcC--cccCCEEEE-e-CCcHHHHHHHHHHHHhcCceEE
Confidence 345667777665443332 22 44443221 1122333322 233678877 2 2222222233333433366776
Q ss_pred EEEccCChHHHHHHHHcCCCceEe
Q 029986 95 MMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 95 i~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.-+ .+.+.......+|++..+.
T Consensus 222 ar~--~~~~~~~~l~~~Gad~vi~ 243 (565)
T 4gx0_A 222 AVV--KEPVHGELLRLAGANQVVP 243 (565)
T ss_dssp EEC--SSGGGHHHHHHHTCSEEEC
T ss_pred EEE--CCHHHHHHHHHcCCCEEEC
Confidence 654 3455666667889985554
No 347
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=33.18 E-value=60 Score=24.95 Aligned_cols=59 Identities=25% Similarity=0.302 Sum_probs=45.5
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCC
Q 029986 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDM 76 (184)
Q Consensus 15 ~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~ 76 (184)
..+.+++|+......-.-+..+|.+.+.+|..+++...-+..+- ...|+++.-..-|+.
T Consensus 177 l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T~dl~~~~---~~ADIvV~A~G~p~~ 235 (303)
T 4b4u_A 177 IAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRTQNLPELV---KQADIIVGAVGKAEL 235 (303)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH---HTCSEEEECSCSTTC
T ss_pred CCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCCCCHHHHh---hcCCeEEeccCCCCc
Confidence 35779999999999999999999999999998876554444332 126999998766653
No 348
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=33.18 E-value=85 Score=23.80 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=31.6
Q ss_pred EEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
.|.++. .+.+.+.++..+|++...+.|++.+.+..++..+
T Consensus 198 ~IgVev-~t~eea~eA~~aGaD~I~ld~~~~~~~k~av~~v 237 (286)
T 1x1o_A 198 KVEVEV-RSLEELEEALEAGADLILLDNFPLEALREAVRRV 237 (286)
T ss_dssp CEEEEE-SSHHHHHHHHHHTCSEEEEESCCHHHHHHHHHHH
T ss_pred EEEEEe-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 344443 4588889999999998889999999998887765
No 349
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=33.07 E-value=51 Score=23.38 Aligned_cols=82 Identities=11% Similarity=-0.004 Sum_probs=50.4
Q ss_pred CCeEEEEeCCHHHHHH--HHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCC--CCCC-----CHHHHHHHhcc
Q 029986 17 GLRVLVVDDDPIWLRI--LEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH--MPDM-----DGFKLHEQVGL 87 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~--l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~--l~~~-----~g~~l~~~l~~ 87 (184)
..+|++.|..|...-. +...|.+.|..+....+..-+.-+ .......|.||+..+ +.++ -|--.+..+.+
T Consensus 4 ~~~V~v~EsRP~~qG~rlta~eL~~~gI~vtlI~Dsa~~~~m-~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~Ak 82 (191)
T 1w2w_B 4 MGHVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRI-RTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVICK 82 (191)
T ss_dssp EEEEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGGGHHHHH-HHCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHHH
T ss_pred EEEEEEcCCCCccccHHHHHHHHHHcCCCEEEEechHHHHHH-HhCCCCCCEEEECccEEecCCCEEecccHHHHHHHHH
Confidence 3578888888875442 467788889888877765444433 311112899998653 2332 24444555544
Q ss_pred cCCCCEEEEEcc
Q 029986 88 EMDLPVIMMSVD 99 (184)
Q Consensus 88 ~~~~~iIi~~~~ 99 (184)
..++|+++++..
T Consensus 83 ~~~vPf~V~a~~ 94 (191)
T 1w2w_B 83 QFGIKFFVVAPK 94 (191)
T ss_dssp HHTCEEEEECCG
T ss_pred HcCCCEEEeccc
Confidence 568999988643
No 350
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=33.03 E-value=1.6e+02 Score=23.39 Aligned_cols=81 Identities=10% Similarity=-0.097 Sum_probs=53.1
Q ss_pred CCCeEEEEeCCHHHHH--HHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCC--CCCC-----CHHHHHHHhc
Q 029986 16 AGLRVLVVDDDPIWLR--ILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH--MPDM-----DGFKLHEQVG 86 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~--~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~--l~~~-----~g~~l~~~l~ 86 (184)
...+|++.|..|...- .+...|...|..+....+.--+.-+ . ....|.||+... ..++ -|--.+..+.
T Consensus 210 k~~~V~v~EtRP~~qGarltA~eL~~~GIpvtlI~Dsa~~~~M-~--~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~A 286 (383)
T 2a0u_A 210 KLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLM-L--NRKIDAVVVGADRICQNGDTANKIGTYNLAVSA 286 (383)
T ss_dssp CEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHH-H--HSCCCEEEECCSEECTTCCEEEETTHHHHHHHH
T ss_pred CeEEEEEeCCCCccchHHHHHHHHHHcCCCEEEEehhHHHHHh-h--cCCCCEEEECccEEecCCCEeecccHHHHHHHH
Confidence 4568999998887654 2467788889988888765444433 3 244899998553 3333 2444455555
Q ss_pred ccCCCCEEEEEcc
Q 029986 87 LEMDLPVIMMSVD 99 (184)
Q Consensus 87 ~~~~~~iIi~~~~ 99 (184)
+..++|+++.+..
T Consensus 287 k~~~vPfyV~ap~ 299 (383)
T 2a0u_A 287 KFHGVKLYVAAPT 299 (383)
T ss_dssp HHTTCCEEEECCG
T ss_pred HHcCCCEEEeCCc
Confidence 5678999988643
No 351
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=32.97 E-value=1.3e+02 Score=21.91 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCeEEEEC--C---HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 31 RILEKMLRKCLYEVTKCN--R---AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 31 ~~l~~~L~~~~~~v~~~~--~---~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
..+...+++.||.+..+. + ..+.++.+. ...+|-+|+-.... +. +.++.+.. ++|+|++.
T Consensus 31 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~--~~~vdgiIi~~~~~--~~-~~~~~~~~--~iPvV~i~ 95 (289)
T 3k9c_A 31 EQIYAAATRRGYDVMLSAVAPSRAEKVAVQALM--RERCEAAILLGTRF--DT-DELGALAD--RVPALVVA 95 (289)
T ss_dssp HHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHT--TTTEEEEEEETCCC--CH-HHHHHHHT--TSCEEEES
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHH--hCCCCEEEEECCCC--CH-HHHHHHHc--CCCEEEEc
Confidence 344555566677665432 1 233444443 44577777643222 22 44454432 57777664
No 352
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=32.94 E-value=1.8e+02 Score=22.87 Aligned_cols=84 Identities=8% Similarity=0.040 Sum_probs=51.4
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE-eCCCCH---H
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL-LKPIRI---K 124 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l-~kP~~~---~ 124 (184)
+.++++++++.- ..+++.+++--++..+ ++..+.++....+||+.--.-.+.....++++.|+.|++ +|+... .
T Consensus 230 ~~~~ai~~~~~l-~~~~i~~iE~P~~~~~-~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 307 (410)
T 2gl5_A 230 GTNSAIQFAKAI-EKYRIFLYEEPIHPLN-SDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGIT 307 (410)
T ss_dssp CHHHHHHHHHHH-GGGCEEEEECSSCSSC-HHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHH-HhcCCCeEECCCChhh-HHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 567777777542 2367778876555433 455666655556777654333456788888988876655 777654 3
Q ss_pred HHHHHHHHHH
Q 029986 125 ELRNIWQHVA 134 (184)
Q Consensus 125 ~l~~~l~~~~ 134 (184)
+..++...+.
T Consensus 308 ~~~~ia~~A~ 317 (410)
T 2gl5_A 308 EGKKICDYAN 317 (410)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 353
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=32.73 E-value=1.1e+02 Score=21.04 Aligned_cols=66 Identities=14% Similarity=0.017 Sum_probs=41.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCC---eEE-EECCHHHHHHHHHhcCCC-ccEEEEeCCCCCCCHHHHHHHh
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLY---EVT-KCNRAEIALDMLRMSKNG-YDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~---~v~-~~~~~~~~~~~l~~~~~~-~dlvilD~~l~~~~g~~l~~~l 85 (184)
.+|.-+|-++...+..+..+...+. .+. ...+..+....+ .... +|+|++|.-....+..++++.+
T Consensus 77 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~~~fD~I~~~~~~~~~~~~~~l~~~ 147 (201)
T 2ift_A 77 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP--QNQPHFDVVFLDPPFHFNLAEQAISLL 147 (201)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC--CSSCCEEEEEECCCSSSCHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh--ccCCCCCEEEECCCCCCccHHHHHHHH
Confidence 3799999999999988888877664 343 334444322111 1346 8999998764433444556655
No 354
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=32.60 E-value=1.3e+02 Score=21.26 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=44.3
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcCCe--E-EEECCHHHHHHHHHhc------------C-CCccEEEEeCCCCCCC
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYE--V-TKCNRAEIALDMLRMS------------K-NGYDIVISDVHMPDMD 77 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~~~--v-~~~~~~~~~~~~l~~~------------~-~~~dlvilD~~l~~~~ 77 (184)
.+++.+|..+|-++...+..+..+...|+. + ....+..+.+..+... . ..+|+|+++...+ +
T Consensus 82 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~--~ 159 (239)
T 2hnk_A 82 LPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE--N 159 (239)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG--G
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHH--H
Confidence 344568999999999999888888776542 2 3456666655433211 1 4699999986432 2
Q ss_pred HHHHHHHh
Q 029986 78 GFKLHEQV 85 (184)
Q Consensus 78 g~~l~~~l 85 (184)
-.++++.+
T Consensus 160 ~~~~l~~~ 167 (239)
T 2hnk_A 160 YPNYYPLI 167 (239)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 23444444
No 355
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=32.58 E-value=98 Score=22.78 Aligned_cols=55 Identities=4% Similarity=-0.119 Sum_probs=41.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhcccC-CCCEEEEEccCChHHHHHHHHcCCCceEeCCC
Q 029986 65 DIVISDVHMPDMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI 121 (184)
Q Consensus 65 dlvilD~~l~~~~g~~l~~~l~~~~-~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~ 121 (184)
.+|-++. .......++++++++.. ++|+++=..-.+.+.+..+++ ||+..++-..
T Consensus 157 ~~VYl~s-~G~~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa 212 (240)
T 1viz_A 157 PIFYLEY-SGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNA 212 (240)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECTH
T ss_pred CEEEEeC-CCccChHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEEChH
Confidence 5777776 44444578899997665 788877666777888888888 9999986554
No 356
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=32.51 E-value=1.4e+02 Score=23.29 Aligned_cols=81 Identities=15% Similarity=0.062 Sum_probs=53.4
Q ss_pred CCCeEEEEeCCHHHHH--HHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCC--CCCC-----CHHHHHHHhc
Q 029986 16 AGLRVLVVDDDPIWLR--ILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH--MPDM-----DGFKLHEQVG 86 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~--~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~--l~~~-----~g~~l~~~l~ 86 (184)
...+|++.|..|...- .+...|.+.|..+....+..-+.-+ . ....|.||+..+ +.++ -|--.+..+.
T Consensus 181 k~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M-~--~~~Vd~VivGAd~V~aNG~v~NKiGT~~lAl~A 257 (347)
T 1t9k_A 181 KRIRVFADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLM-K--RGLIDAVVVGADRIALNGDTANKIGTYSLAVLA 257 (347)
T ss_dssp CCEEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHH-H--TTCCSEEEECCSEEETTSCEEEETTHHHHHHHH
T ss_pred CeEEEEEeCCCCccccHHHHHHHHHhCCCCEEEEehhHHHHHh-h--cCCCCEEEECccEEecCCCEEecccHHHHHHHH
Confidence 4568999998887654 2467788889999888765444332 3 345899998553 2332 2444455555
Q ss_pred ccCCCCEEEEEcc
Q 029986 87 LEMDLPVIMMSVD 99 (184)
Q Consensus 87 ~~~~~~iIi~~~~ 99 (184)
+..++|+++.+..
T Consensus 258 k~~~vPfyV~ap~ 270 (347)
T 1t9k_A 258 KRNNIPFYVAAPV 270 (347)
T ss_dssp HHTTCCEEEECCG
T ss_pred HHcCCCEEEeccc
Confidence 5678999988643
No 357
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=32.37 E-value=83 Score=23.78 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=29.9
Q ss_pred CCeEEEEeCCH---HHHHHHHHHHHhcCCeEEEEC---CHHH----HHHHHHhcCCCccEEEEeC
Q 029986 17 GLRVLVVDDDP---IWLRILEKMLRKCLYEVTKCN---RAEI----ALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 17 ~~~Ilivdd~~---~~~~~l~~~L~~~~~~v~~~~---~~~~----~~~~l~~~~~~~dlvilD~ 71 (184)
+.+|++++-+. ...+.+...-...+..+.... +..+ +++.+. ...+|+||+|.
T Consensus 126 g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~--~~~~D~ViIDT 188 (297)
T 1j8m_F 126 GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL--SEKMEIIIVDT 188 (297)
T ss_dssp TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH--HTTCSEEEEEC
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH--hCCCCEEEEeC
Confidence 45789998873 333444444444466554432 3332 333332 25699999998
No 358
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=32.35 E-value=1.6e+02 Score=23.16 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=37.1
Q ss_pred CCccEEEEeCCCCCC-CHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 62 NGYDIVISDVHMPDM-DGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 62 ~~~dlvilD~~l~~~-~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
..+|.|.++....+. ...++++.++.. ++.||++ ..-.+.+.+..+.++|++...+
T Consensus 164 ~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv-~~v~~~~~a~~a~~~Gad~I~v 221 (404)
T 1eep_A 164 AHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIA-GNIVTKEAALDLISVGADCLKV 221 (404)
T ss_dssp TTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHTTTCSEEEE
T ss_pred CCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEE-cCCCcHHHHHHHHhcCCCEEEE
Confidence 458888876433222 246677777654 3678775 2234578888999999997766
No 359
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=32.33 E-value=1.3e+02 Score=21.24 Aligned_cols=82 Identities=7% Similarity=-0.057 Sum_probs=55.9
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEeCCCCC-CC-HHHHHHHhcc-cCCCCEEEEEccCChHHHHHHHHcCCCceE-----
Q 029986 46 KCNRAEIALDMLRMSKNGYDIVISDVHMPD-MD-GFKLHEQVGL-EMDLPVIMMSVDGCTQDVMKGVTHGACNYL----- 117 (184)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-~~-g~~l~~~l~~-~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l----- 117 (184)
-+.+..++..... .+.|.|-+ .|. .- |.+.++.++. .+++|++.+.. -+.+.+..++.+|++...
T Consensus 110 G~~t~~e~~~A~~---~Gad~v~~---fpa~~~gG~~~lk~l~~~~~~ipvvaiGG-I~~~n~~~~l~aGa~~vavgSai 182 (207)
T 2yw3_A 110 GVLTPTEVERALA---LGLSALKF---FPAEPFQGVRVLRAYAEVFPEVRFLPTGG-IKEEHLPHYAALPNLLAVGGSWL 182 (207)
T ss_dssp EECSHHHHHHHHH---TTCCEEEE---TTTTTTTHHHHHHHHHHHCTTCEEEEBSS-CCGGGHHHHHTCSSBSCEEESGG
T ss_pred cCCCHHHHHHHHH---CCCCEEEE---ecCccccCHHHHHHHHhhCCCCcEEEeCC-CCHHHHHHHHhCCCcEEEEehhh
Confidence 4677888877765 45888877 443 33 8888888864 35788887644 456788889999998774
Q ss_pred eCCCCHHHHHHHHHHHHc
Q 029986 118 LKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 118 ~kP~~~~~l~~~l~~~~~ 135 (184)
.+ -+..++....+.+.+
T Consensus 183 ~~-~d~~~i~~~a~~~~~ 199 (207)
T 2yw3_A 183 LQ-GNLEAVRAKVRAAKA 199 (207)
T ss_dssp GS-SCHHHHHHHHHHHHH
T ss_pred hC-CCHHHHHHHHHHHHH
Confidence 33 445556666666554
No 360
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=31.81 E-value=80 Score=21.50 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=26.4
Q ss_pred CCeEEEEeCCH--HHHHHHHHHHHhcCCeEEEEC
Q 029986 17 GLRVLVVDDDP--IWLRILEKMLRKCLYEVTKCN 48 (184)
Q Consensus 17 ~~~Ilivdd~~--~~~~~l~~~L~~~~~~v~~~~ 48 (184)
.|||.|--|+. .+.+.|..+|++.|++|.-+.
T Consensus 7 ~mkI~igsDhaG~~lK~~i~~~L~~~G~eV~D~G 40 (148)
T 4em8_A 7 VKRVFLSSDHAGVELRLFLSAYLRDLGCEVFDCG 40 (148)
T ss_dssp CSEEEEEECGGGHHHHHHHHHHHHHTTCEEEECC
T ss_pred eeEEEEEECchhHHHHHHHHHHHHHCCCEEEEeC
Confidence 36899999986 677889999999999987653
No 361
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=31.81 E-value=27 Score=27.09 Aligned_cols=70 Identities=21% Similarity=0.314 Sum_probs=46.8
Q ss_pred CeEEEECCHHHHHHHHH-hcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCc
Q 029986 42 YEVTKCNRAEIALDMLR-MSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACN 115 (184)
Q Consensus 42 ~~v~~~~~~~~~~~~l~-~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~ 115 (184)
|++-.. +..+++.... ....+.|+|++- |++.-+++++.++...++|+..+-.+.+-..++.|.+.|..|
T Consensus 225 YQmdpa-N~~EAlrE~~~Di~EGAD~vMVK---Pal~YLDIir~vk~~~~~P~aaYqVSGEYAMikaAa~~GwiD 295 (328)
T 1w1z_A 225 YQMNPA-NTEEAMKEVELDIVEGADIVMVK---PGLAYLDIVWRTKERFDVPVAIYHVSGEYAMVKAAAAKGWID 295 (328)
T ss_dssp TSBCTT-CSHHHHHHHHHHHHHTCSEEEEE---SCGGGHHHHHHHHHHHCSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred cCCCCC-CHHHHHHHHHhhHHhCCCEEEEc---CCCchHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCcc
Confidence 444333 3445554442 234568999986 455667888888766689999887777677777777777654
No 362
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=31.67 E-value=1.7e+02 Score=22.15 Aligned_cols=88 Identities=11% Similarity=0.127 Sum_probs=41.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEECCHH--HHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcc-cCCCCEEEE
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVTKCNRAE--IALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGL-EMDLPVIMM 96 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~--~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~-~~~~~iIi~ 96 (184)
|.++|.++...+ +. ..++.+... |.. +.++.. .-...|.+++-..- +......+..++. .++.+++.-
T Consensus 140 v~vid~~~~~~~-~~----~~~~~~i~g-d~~~~~~L~~a--~i~~a~~vi~~~~~-d~~n~~~~~~ar~~~~~~~iiar 210 (336)
T 1lnq_A 140 FVLAEDENVRKK-VL----RSGANFVHG-DPTRVSDLEKA--NVRGARAVIVDLES-DSETIHCILGIRKIDESVRIIAE 210 (336)
T ss_dssp EEEESCGGGHHH-HH----HTTCEEEES-CTTSHHHHHHT--CSTTEEEEEECCSS-HHHHHHHHHHHHTTCTTSEEEEE
T ss_pred EEEEeCChhhhh-HH----hCCcEEEEe-CCCCHHHHHhc--ChhhccEEEEcCCc-cHHHHHHHHHHHHHCCCCeEEEE
Confidence 666776665544 32 244444332 222 222222 12346777775421 1112222333333 244556655
Q ss_pred EccCChHHHHHHHHcCCCceEe
Q 029986 97 SVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 97 ~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
+ .+++......++|++..+.
T Consensus 211 ~--~~~~~~~~l~~~G~d~vi~ 230 (336)
T 1lnq_A 211 A--ERYENIEQLRMAGADQVIS 230 (336)
T ss_dssp C--SSGGGHHHHHHTTCSEEEC
T ss_pred E--CCHHHHHHHHHcCCCEEEC
Confidence 4 3455555666789985543
No 363
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=31.52 E-value=79 Score=24.88 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=37.7
Q ss_pred CeEEEEeCCHHH----HHHHHHHHHhcCCeEEEEC---------CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHH
Q 029986 18 LRVLVVDDDPIW----LRILEKMLRKCLYEVTKCN---------RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQ 84 (184)
Q Consensus 18 ~~Ilivdd~~~~----~~~l~~~L~~~~~~v~~~~---------~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~ 84 (184)
-|++||-|.... .+.+...|+..|+.+..+. +.+++.+.++ +..+|+||- +.+++-++..+.
T Consensus 32 ~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~--~~~~D~IIa---vGGGsv~D~aK~ 106 (383)
T 3ox4_A 32 KNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILK--DNNSDFVIS---LGGGSPHDCAKA 106 (383)
T ss_dssp CEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHH--HHTCSEEEE---EESHHHHHHHHH
T ss_pred CEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHH--hcCcCEEEE---eCCcHHHHHHHH
Confidence 378888886543 3445666776676654442 3445555555 345787653 346666666665
Q ss_pred h
Q 029986 85 V 85 (184)
Q Consensus 85 l 85 (184)
+
T Consensus 107 i 107 (383)
T 3ox4_A 107 I 107 (383)
T ss_dssp H
T ss_pred H
Confidence 5
No 364
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=31.46 E-value=55 Score=26.35 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=26.0
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHHhcCCeEEEEC---CHHH----HHHHHHhcCCCccEEEEeC
Q 029986 17 GLRVLVVDDDPI---WLRILEKMLRKCLYEVTKCN---RAEI----ALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 17 ~~~Ilivdd~~~---~~~~l~~~L~~~~~~v~~~~---~~~~----~~~~l~~~~~~~dlvilD~ 71 (184)
+.+|+++|-|+. ..+.+...-...+..+.... +..+ +++.+. ...+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~--~~~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK--LKFYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHH--HTTCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHH--hCCCCEEEEEC
Confidence 456777777652 22222222223344444332 2222 233332 24589999998
No 365
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=31.42 E-value=59 Score=24.40 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=40.1
Q ss_pred HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE------eCCCCHHHHHHHHHHHHc
Q 029986 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL------LKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 79 ~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l------~kP~~~~~l~~~l~~~~~ 135 (184)
+++++.++...++|||....-.+.+.+.+++..||+... ..|....++.+-+...+.
T Consensus 230 ~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~~ 292 (311)
T 1ep3_A 230 LKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMD 292 (311)
T ss_dssp HHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHHH
Confidence 467777765557899887766678899999999988663 345555566655555443
No 366
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=31.41 E-value=1.5e+02 Score=21.42 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=46.6
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcCC--eE-EEECCHHHHHHHHHhc---CCCccEEEEeCCCCCCCHHHHHHHh
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLY--EV-TKCNRAEIALDMLRMS---KNGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~~--~v-~~~~~~~~~~~~l~~~---~~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
.|++.+|..+|-++...+..+..+...|. .+ ....+..+.+..+... ...+|+||+|... .+-..+++.+
T Consensus 101 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~ 176 (247)
T 1sui_A 101 IPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADK--DNYLNYHKRL 176 (247)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCS--TTHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCch--HHHHHHHHHH
Confidence 34456899999999998888888887665 23 3456776665544211 3569999999652 3344555554
No 367
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=31.29 E-value=1.9e+02 Score=22.56 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=27.9
Q ss_pred CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 89 MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 89 ~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
..+|+|++-...+. .+..+.|+. +++.+ +.++|.+.+..++..
T Consensus 325 ~G~PvV~~~~~~~~---~e~v~~G~~-~lv~~-d~~~l~~ai~~ll~d 367 (396)
T 3dzc_A 325 LGKPVLVMRETTER---PEAVAAGTV-KLVGT-NQQQICDALSLLLTD 367 (396)
T ss_dssp GTCCEEECCSSCSC---HHHHHHTSE-EECTT-CHHHHHHHHHHHHHC
T ss_pred cCCCEEEccCCCcc---hHHHHcCce-EEcCC-CHHHHHHHHHHHHcC
Confidence 46898875332222 234667864 66654 789999999888753
No 368
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=31.21 E-value=1.5e+02 Score=21.58 Aligned_cols=68 Identities=4% Similarity=-0.102 Sum_probs=45.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhcccC-CCCEEEEEccCChHHHHHHHHcCCCceEeCCC---CHHHHHHHHHHH
Q 029986 64 YDIVISDVHMPDMDGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYLLKPI---RIKELRNIWQHV 133 (184)
Q Consensus 64 ~dlvilD~~l~~~~g~~l~~~l~~~~-~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~---~~~~l~~~l~~~ 133 (184)
.++|.+|. .......++++++++.. ++|+++=..-.+.+.+.+++ .||+..++--. +++.+.+.++.+
T Consensus 154 ~~~VYld~-sG~~~~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~~p~~~~~~v~a~ 225 (228)
T 3vzx_A 154 LPIFYLEY-SGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYEDFDRALKTVAAV 225 (228)
T ss_dssp CSEEEEEC-TTSCCCHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHCHHHHHHHHHHH
T ss_pred CCEEEecC-CCCcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhcCHHHHHHHHHHH
Confidence 58888888 33222478889887655 68887666667788888877 79999986543 234444444433
No 369
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=31.20 E-value=1e+02 Score=19.66 Aligned_cols=94 Identities=18% Similarity=0.140 Sum_probs=42.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECC-HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNR-AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~-~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi 95 (184)
+.+|.++|.++...+.+. ..++.+....- ..+.++.+. -...|++|+-.. .+......+..++......++.
T Consensus 29 g~~V~~id~~~~~~~~~~----~~~~~~~~gd~~~~~~l~~~~--~~~~d~vi~~~~-~~~~n~~~~~~a~~~~~~~iia 101 (141)
T 3llv_A 29 GKKVLAVDKSKEKIELLE----DEGFDAVIADPTDESFYRSLD--LEGVSAVLITGS-DDEFNLKILKALRSVSDVYAIV 101 (141)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEECCTTCHHHHHHSC--CTTCSEEEECCS-CHHHHHHHHHHHHHHCCCCEEE
T ss_pred CCeEEEEECCHHHHHHHH----HCCCcEEECCCCCHHHHHhCC--cccCCEEEEecC-CHHHHHHHHHHHHHhCCceEEE
Confidence 345677777665444332 23444332211 112222211 234788887543 1111122333333333445555
Q ss_pred EEccCChHHHHHHHHcCCCceEeCC
Q 029986 96 MSVDGCTQDVMKGVTHGACNYLLKP 120 (184)
Q Consensus 96 ~~~~~~~~~~~~a~~~ga~~~l~kP 120 (184)
.+. +........+.|++. +..|
T Consensus 102 ~~~--~~~~~~~l~~~G~~~-vi~p 123 (141)
T 3llv_A 102 RVS--SPKKKEEFEEAGANL-VVLV 123 (141)
T ss_dssp EES--CGGGHHHHHHTTCSE-EEEH
T ss_pred EEc--ChhHHHHHHHcCCCE-EECH
Confidence 443 345556667889874 4445
No 370
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=30.97 E-value=1.5e+02 Score=21.44 Aligned_cols=63 Identities=13% Similarity=0.003 Sum_probs=38.6
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCC--CCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMP--DMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~--~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
+.++..+... .+.|+|++|...- ...--++++.++.. . ++++..-.+.+.+..+.+.|++...
T Consensus 90 ~~~~i~~~~~---~Gad~V~l~~~~~~~p~~l~~~i~~~~~~-g--~~v~~~v~t~eea~~a~~~Gad~Ig 154 (232)
T 3igs_A 90 FLDDVDALAQ---AGAAIIAVDGTARQRPVAVEALLARIHHH-H--LLTMADCSSVDDGLACQRLGADIIG 154 (232)
T ss_dssp SHHHHHHHHH---HTCSEEEEECCSSCCSSCHHHHHHHHHHT-T--CEEEEECCSHHHHHHHHHTTCSEEE
T ss_pred cHHHHHHHHH---cCCCEEEECccccCCHHHHHHHHHHHHHC-C--CEEEEeCCCHHHHHHHHhCCCCEEE
Confidence 3344444433 4479999988641 23445666666532 3 3334455678888999999998553
No 371
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=30.92 E-value=96 Score=21.17 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=61.9
Q ss_pred CCCeEEEEeCCH-----H-HHHHHHHHHHhcCCeEEE----------E--C---C----HHHHHHHHHhcCCCccEEEEe
Q 029986 16 AGLRVLVVDDDP-----I-WLRILEKMLRKCLYEVTK----------C--N---R----AEIALDMLRMSKNGYDIVISD 70 (184)
Q Consensus 16 ~~~~Ilivdd~~-----~-~~~~l~~~L~~~~~~v~~----------~--~---~----~~~~~~~l~~~~~~~dlvilD 70 (184)
..++|.+...-. . ..+.+...|+..| +|.. . . + ....++++. . .|+|+.+
T Consensus 10 ~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~--~--aD~vva~ 84 (165)
T 2khz_A 10 APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQ--Q--ADVVVAE 84 (165)
T ss_dssp CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHH--H--CSEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHH--h--CCEEEEE
Confidence 356788875332 1 4567788888777 6521 0 0 1 223344544 2 6999998
Q ss_pred CCCCC-CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCC---CceEeCCCCHHHHHHHHHHHHcCC
Q 029986 71 VHMPD-MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGA---CNYLLKPIRIKELRNIWQHVAQQP 137 (184)
Q Consensus 71 ~~l~~-~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga---~~~l~kP~~~~~l~~~l~~~~~~~ 137 (184)
..-++ +.++|+--.. ..+.||+.+...... ....++-.|. ..+-...++.+++...+...+...
T Consensus 85 ~~~~d~Gt~~EiGyA~--algKPVi~l~~~~~~-~~~n~M~~g~~~~~~~~~~~y~~~el~~~l~~~~~~~ 152 (165)
T 2khz_A 85 VTQPSLGVGYELGRAV--ALGKPILCLFRPQSG-RVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEAY 152 (165)
T ss_dssp CSSCCHHHHHHHHHHH--HTCSSEEEEECTTTT-CCCCHHHHHTCCSSSEEEEECCTTTHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHH--HCCCEEEEEEcCCCC-CcchhhhcccCccceeEEEecCHHHHHHHHHHHHHhc
Confidence 76221 2234433322 346799988654421 1111222233 334455557888988888887743
No 372
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=30.80 E-value=1.7e+02 Score=21.86 Aligned_cols=99 Identities=11% Similarity=-0.070 Sum_probs=53.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEE-EEC--CHHHHHHHHHhcCCCccEEEEeCCCC--CC------CHHHHHHHhccc
Q 029986 20 VLVVDDDPIWLRILEKMLRKCLYEVT-KCN--RAEIALDMLRMSKNGYDIVISDVHMP--DM------DGFKLHEQVGLE 88 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~--~~~~~~~~l~~~~~~~dlvilD~~l~--~~------~g~~l~~~l~~~ 88 (184)
+++.|-.......+...+++.|.... .+. +..+-+..+.... .+.|.+=..++ +. +-.++++++++.
T Consensus 127 vii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~--~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~ 204 (267)
T 3vnd_A 127 VLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQG--EGYTYLLSRAGVTGTESKAGEPIENILTQLAEF 204 (267)
T ss_dssp EEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHC--CSCEEESCCCCCC--------CHHHHHHHHHTT
T ss_pred EEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhC--CCcEEEEecCCCCCCccCCcHHHHHHHHHHHHh
Confidence 34444444455666777777776533 222 2233444333222 23333311222 11 124567777665
Q ss_pred CCCCEEEEEccCChHHHHHHHHcCCCceEeCC
Q 029986 89 MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120 (184)
Q Consensus 89 ~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP 120 (184)
.+.|+++=..-.+++.+..++..||+++++--
T Consensus 205 ~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGS 236 (267)
T 3vnd_A 205 NAPPPLLGFGIAEPEQVRAAIKAGAAGAISGS 236 (267)
T ss_dssp TCCCEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred cCCCEEEECCcCCHHHHHHHHHcCCCEEEECH
Confidence 57787764444457777779999999998753
No 373
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=30.78 E-value=1.4e+02 Score=22.43 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=34.0
Q ss_pred cCCCCEEEEEccCC--hHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHcC
Q 029986 88 EMDLPVIMMSVDGC--TQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQQ 136 (184)
Q Consensus 88 ~~~~~iIi~~~~~~--~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~~ 136 (184)
.+.+-++++++... .+.+..|+++|.+=++-||+ +.++..+.+..+.+.
T Consensus 70 ~~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 122 (312)
T 3o9z_A 70 GEGVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEART 122 (312)
T ss_dssp TCCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 45566666654333 46788899999999999997 566777777666543
No 374
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=30.76 E-value=31 Score=26.40 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=38.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc------CCeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKC------LYEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~------~~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~ 75 (184)
+.-+|-+||=|+..-+.-+.+|... .-.+ ....|+... ++.....+|+||+|..-|.
T Consensus 106 ~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~---l~~~~~~yDvIi~D~~dp~ 169 (294)
T 3o4f_A 106 NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNF---VNQTSQTFDVIISDCTDPI 169 (294)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTT---TSCSSCCEEEEEESCCCCC
T ss_pred CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHH---HhhccccCCEEEEeCCCcC
Confidence 3458999999999998888887431 1122 245555443 4444567999999986554
No 375
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=30.75 E-value=52 Score=23.86 Aligned_cols=55 Identities=9% Similarity=-0.037 Sum_probs=33.9
Q ss_pred CccEEEEeCCCCCCC-------HHHHHHHhcccC-----CCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 63 GYDIVISDVHMPDMD-------GFKLHEQVGLEM-----DLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 63 ~~dlvilD~~l~~~~-------g~~l~~~l~~~~-----~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
..|.|.+=...|+.. +.+.++++++.. +.||.+... -+.+.+..+.++||+.++.
T Consensus 134 ~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GG-I~~~~~~~~~~aGad~vvv 200 (230)
T 1tqj_A 134 VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG-LKPNNTWQVLEAGANAIVA 200 (230)
T ss_dssp GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESS-CCTTTTHHHHHHTCCEEEE
T ss_pred cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECC-cCHHHHHHHHHcCCCEEEE
Confidence 367776666666522 355566664332 677776644 3456777888899999874
No 376
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=30.43 E-value=2e+02 Score=22.64 Aligned_cols=56 Identities=20% Similarity=0.159 Sum_probs=38.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC----------CeEEEECCHHHHHHHHHhcCCCccEEEEeCCC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCL----------YEVTKCNRAEIALDMLRMSKNGYDIVISDVHM 73 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~----------~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l 73 (184)
-+|.+||-++...+..++.+...+ -.-....|+.+.++........+|+||+|..-
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 277 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCC
Confidence 579999999999998888875321 11235667777766542124669999999854
No 377
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=30.42 E-value=1.5e+02 Score=21.09 Aligned_cols=58 Identities=16% Similarity=0.035 Sum_probs=34.0
Q ss_pred CHHHHHHHhcccCCCCEEEEE-ccCChHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHH
Q 029986 77 DGFKLHEQVGLEMDLPVIMMS-VDGCTQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVA 134 (184)
Q Consensus 77 ~g~~l~~~l~~~~~~~iIi~~-~~~~~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~ 134 (184)
.|.++++.++...+.|+.+.. .......+..+.++|++...+... ..+.+...++.+.
T Consensus 55 ~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~~ 115 (230)
T 1rpx_A 55 IGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIK 115 (230)
T ss_dssp CCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHH
T ss_pred cCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecCccchhHHHHHHHHH
Confidence 467889988754444543332 222224677889999997765554 3344444444443
No 378
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=30.33 E-value=44 Score=25.60 Aligned_cols=79 Identities=10% Similarity=-0.032 Sum_probs=49.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc------CCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC------LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMD 90 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~------~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~ 90 (184)
.+++..|-+++..++.....|.+. +.+..... ..+.+.++.. ...|++|+.+ +....|++++++-..-+
T Consensus 195 ~I~L~~vV~de~a~~~a~~~l~~Lv~~~Ri~a~~~vv~--~~F~~il~~s-~~ADL~flGl--~~~~df~~~~~~~~~~~ 269 (294)
T 3g40_A 195 SLSFMTFAPTAIQAQAAENFLQSLAELARIPNVKMQVL--RENPIKSSKL-PFASLHIFSL--DPNPDLDLARHLMEKAG 269 (294)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHHTCCSCEEEEE--SSCTTTSSSC-CCCSEEEEEC--CSSCCHHHHHHHHHHHT
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHhcCCceEEEec--CchHHHHhhC-cCCCEEEEcC--CCCCcHHHHHHHHHhcC
Confidence 457777888888777777666642 43332221 3333444432 4579999965 67778899998844444
Q ss_pred CCEEEEEccC
Q 029986 91 LPVIMMSVDG 100 (184)
Q Consensus 91 ~~iIi~~~~~ 100 (184)
.-++++.+.+
T Consensus 270 ssc~f~~dsg 279 (294)
T 3g40_A 270 SSCIFALDSG 279 (294)
T ss_dssp SEEEEEECCS
T ss_pred CeEEEEecCc
Confidence 5677776544
No 379
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=30.27 E-value=19 Score=26.26 Aligned_cols=80 Identities=10% Similarity=0.037 Sum_probs=41.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhc--CCCccEEEEeCC-CCCCCHHHHHHHhcccCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMS--KNGYDIVISDVH-MPDMDGFKLHEQVGLEMDL 91 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~--~~~~dlvilD~~-l~~~~g~~l~~~l~~~~~~ 91 (184)
+.+|+++......+ ......+..|. ......+..+.++.+... ...+|+|++|-- .-..+-+++++.+.. .++
T Consensus 40 g~kVli~~~~~d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~-~gi 117 (223)
T 2b8t_A 40 DVKYLVFKPKIDTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAE-NGF 117 (223)
T ss_dssp TCCEEEEEECCCGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHH-TTC
T ss_pred CCEEEEEEeccCch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHh-CCC
Confidence 45677773222112 21222333342 223345666777776521 235899999852 222345566666643 367
Q ss_pred CEEEEEc
Q 029986 92 PVIMMSV 98 (184)
Q Consensus 92 ~iIi~~~ 98 (184)
+||++.-
T Consensus 118 ~Vil~Gl 124 (223)
T 2b8t_A 118 VVIISGL 124 (223)
T ss_dssp EEEEECC
T ss_pred eEEEEec
Confidence 7777653
No 380
>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Probab=30.16 E-value=1.7e+02 Score=22.84 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=51.3
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE-eCCCC---HH
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL-LKPIR---IK 124 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l-~kP~~---~~ 124 (184)
+.++++++++.- ..+++.+++--++..+ ++..++++....+||+.--.-.+.....++++.|+.+++ +|+.. ..
T Consensus 211 ~~~~a~~~~~~l-~~~~i~~iE~P~~~~~-~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 288 (392)
T 2poz_A 211 TTDETIRFCRKI-GELDICFVEEPCDPFD-NGALKVISEQIPLPIAVGERVYTRFGFRKIFELQACGIIQPDIGTAGGLM 288 (392)
T ss_dssp CHHHHHHHHHHH-GGGCEEEEECCSCTTC-HHHHHHHHHHCSSCEEECTTCCHHHHHHHHHTTTCCSEECCCTTTSSCHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEECCCCccc-HHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 567777777542 2367778876555433 455666655456777643333345677788888876665 67764 55
Q ss_pred HHHHHHHHHHc
Q 029986 125 ELRNIWQHVAQ 135 (184)
Q Consensus 125 ~l~~~l~~~~~ 135 (184)
+..++...+..
T Consensus 289 ~~~~i~~~A~~ 299 (392)
T 2poz_A 289 ETKKICAMAEA 299 (392)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 381
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=29.96 E-value=1.4e+02 Score=21.05 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=43.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC--eE-EEECCHHHHHH-HHHhcCCCccEEEEeCCCCCCCHHHHHHHh
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY--EV-TKCNRAEIALD-MLRMSKNGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~--~v-~~~~~~~~~~~-~l~~~~~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
+.+|..+|-++...+..+..+...+. .+ ....+..+.+. .+ ...+|+|++|... .+-.++++.+
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~fD~V~~~~~~--~~~~~~l~~~ 162 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN---DKVYDMIFIDAAK--AQSKKFFEIY 162 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT---TSCEEEEEEETTS--SSHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc---cCCccEEEEcCcH--HHHHHHHHHH
Confidence 56899999999999998888887664 23 34555555443 32 3569999999653 3344556665
No 382
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=29.55 E-value=40 Score=26.29 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=45.0
Q ss_pred CHHHHHHHHH-hcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCc
Q 029986 49 RAEIALDMLR-MSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACN 115 (184)
Q Consensus 49 ~~~~~~~~l~-~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~ 115 (184)
+..+++.... ....+.|+|++- |.+.-+++++.++.. +++|+..+-...+-..++.|.+.|..|
T Consensus 241 N~~EAlre~~~Di~EGAD~vMVK---Pal~YLDIi~~vk~~~p~~P~aaYqVSGEYAMikaAa~~GwiD 306 (342)
T 1h7n_A 241 GRGLARRALERDMSEGADGIIVK---PSTFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVVD 306 (342)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEE---SSGGGHHHHHHHHHHTTTSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHhhHHhCCCeEEEe---cCccHHHHHHHHHHhccCCCeEEEEcCcHHHHHHHHHHcCCcc
Confidence 5566666543 234678999986 455567888888755 499999987776667777777777654
No 383
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=29.52 E-value=1.6e+02 Score=22.26 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=38.8
Q ss_pred HHHHhcc-cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 81 LHEQVGL-EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 81 l~~~l~~-~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
.++..+. .++.+|.+-.. +.+.+.+++++|++...+..++++++...+..+..
T Consensus 184 av~~ar~~~~~~~I~Vev~--t~eea~eal~aGaD~I~LDn~~~~~~~~~v~~l~~ 237 (284)
T 1qpo_A 184 ALRAVRNAAPDLPCEVEVD--SLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDS 237 (284)
T ss_dssp HHHHHHHHCTTSCEEEEES--SHHHHHHHGGGCCSEEEEETCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhc
Confidence 3444432 24446666443 57889999999999888999999999998887654
No 384
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=29.30 E-value=2e+02 Score=22.37 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=38.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCC---eE-EEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLY---EV-TKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~---~v-~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
-+|.-+|-++...+..+.-+...+. .+ ....+..+.+..+......+|+|++|.
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dp 301 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECC
Confidence 4799999999999888888876665 33 356677666554432234699999985
No 385
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=29.21 E-value=1.3e+02 Score=20.02 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=44.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCC---eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHh
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLY---EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~---~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
.+|..+|-++...+..+..+...+. ......+..+....+......+|+|++|.-....+..+.++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence 5799999999998888887776553 2234556666544332123569999998653334455555555
No 386
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=29.07 E-value=76 Score=23.91 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=39.6
Q ss_pred HHHHHHhcccC--CCCEEEEEccCChHHHHHHHHcCCCceEe-------CCCCHHHHHHHHHHHHc
Q 029986 79 FKLHEQVGLEM--DLPVIMMSVDGCTQDVMKGVTHGACNYLL-------KPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 79 ~~l~~~l~~~~--~~~iIi~~~~~~~~~~~~a~~~ga~~~l~-------kP~~~~~l~~~l~~~~~ 135 (184)
++++++++... ++|||....-.+.+.+.+++.+||+.... -|.-..++.+-+...+.
T Consensus 229 ~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~~~p~~~~~i~~~l~~~l~ 294 (311)
T 1jub_A 229 LANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMN 294 (311)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHhcCcHHHHHHHHHHHHHHH
Confidence 56777776544 78999988888889999999999986632 45444455555554443
No 387
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=28.98 E-value=1.6e+02 Score=21.01 Aligned_cols=106 Identities=11% Similarity=0.112 Sum_probs=61.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEE--------CCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHH-HHHHhcc
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKC--------NRAEIALDMLRMSKNGYDIVISDVHMPDMDGFK-LHEQVGL 87 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~--------~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~-l~~~l~~ 87 (184)
+.+|++.-.+. .+..|.+.|+..|+.+..+ ....+..+.+. ...+|+|++-. .++.+ +.+.+..
T Consensus 110 ~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~--~~~~d~v~ftS----~s~v~~~~~~~~~ 182 (229)
T 3p9z_A 110 KKSVLYLRAKE-IVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALK--PKEKSILIFTA----ISHAKAFLHYFEF 182 (229)
T ss_dssp TCEEEEEEESS-CSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHS--CCTTCEEEECS----HHHHHHHHHHSCC
T ss_pred CCEEEEECCcc-chHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHh--cCCCeEEEEEC----HHHHHHHHHHhCc
Confidence 55788776654 3567788888877655321 22223344443 45689888732 23433 2333321
Q ss_pred cCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHH
Q 029986 88 EMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 88 ~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~ 133 (184)
..+.+++.++ +.....+.+.|..-.+.+..+.+.|.+.+..+
T Consensus 183 ~~~~~~~aIG----~~Ta~~l~~~G~~v~va~~~~~e~ll~~l~~l 224 (229)
T 3p9z_A 183 LENYTAISIG----NTTALYLQEQGIPSYIAKKPSLEACLELALSL 224 (229)
T ss_dssp CTTCEEEESS----HHHHHHHHHTTCCEEECSSSSHHHHHHHHHHT
T ss_pred ccCCEEEEEC----HHHHHHHHHcCCCceeCCCCCHHHHHHHHHHH
Confidence 2234455442 44555566678766677777888888887764
No 388
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=28.95 E-value=2e+02 Score=22.27 Aligned_cols=100 Identities=13% Similarity=0.204 Sum_probs=58.7
Q ss_pred CeEEEEe----CCHHHHHHHHHHHHhc-CCeE--EEECCHHHHHHHHHhcCCCccEEEEeCCCCC------------CCH
Q 029986 18 LRVLVVD----DDPIWLRILEKMLRKC-LYEV--TKCNRAEIALDMLRMSKNGYDIVISDVHMPD------------MDG 78 (184)
Q Consensus 18 ~~Ilivd----d~~~~~~~l~~~L~~~-~~~v--~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~------------~~g 78 (184)
..++.++ +.....+.++.+-+.. +..+ ..+.+.+++..+.. .+.|.|.+... ++ ...
T Consensus 133 ~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~---aGaD~I~v~~g-~G~~~~~r~~~g~~~p~ 208 (351)
T 2c6q_A 133 VKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELIL---SGADIIKVGIG-PGSVCTTRKKTGVGYPQ 208 (351)
T ss_dssp CCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH---TTCSEEEECSS-CSTTBCHHHHHCBCCCH
T ss_pred CCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHH---hCCCEEEECCC-CCcCcCccccCCCCccH
Confidence 4455565 2333444454433443 4433 35778888887765 45898877432 11 112
Q ss_pred HHHHHHhc---ccCCCCEEEEEccCChHHHHHHHHcCCCceE-eCCC
Q 029986 79 FKLHEQVG---LEMDLPVIMMSVDGCTQDVMKGVTHGACNYL-LKPI 121 (184)
Q Consensus 79 ~~l~~~l~---~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l-~kP~ 121 (184)
+..+..+. ...++|||.-..-.+...+.+++.+||+... =+++
T Consensus 209 ~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 209 LSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 33333331 1236888877777788999999999998763 3444
No 389
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=28.88 E-value=2.4e+02 Score=23.06 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=58.6
Q ss_pred CeEEEEe----CCHHHHHHHHHHHHhc-CCe--EEEECCHHHHHHHHHhcCCCccEEEEeCCCCC-----------CCHH
Q 029986 18 LRVLVVD----DDPIWLRILEKMLRKC-LYE--VTKCNRAEIALDMLRMSKNGYDIVISDVHMPD-----------MDGF 79 (184)
Q Consensus 18 ~~Ilivd----d~~~~~~~l~~~L~~~-~~~--v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~-----------~~g~ 79 (184)
..++.++ +.....+.++.+-+.. +.. +....+.+.+..+.. .+.|.|.+...-.. ...+
T Consensus 244 ~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~---aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~ 320 (496)
T 4fxs_A 244 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIE---AGVSAVKVGIGPGSICTTRIVTGVGVPQI 320 (496)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHH---HTCSEEEECSSCCTTBCHHHHHCCCCCHH
T ss_pred CceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHH---hCCCEEEECCCCCcCcccccccCCCccHH
Confidence 3466665 3333444555444443 333 234677777777664 45899987532111 1233
Q ss_pred HHHHHhcc---cCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 80 KLHEQVGL---EMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 80 ~l~~~l~~---~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
..+..+.. ...+|||.-..-.+...+.+++.+||+....
T Consensus 321 ~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 321 TAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp HHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence 44444421 2368998876777889999999999988764
No 390
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=28.84 E-value=1.1e+02 Score=21.92 Aligned_cols=54 Identities=11% Similarity=-0.008 Sum_probs=38.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCCCC
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVHMP 74 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~ 74 (184)
++..||-++...+..++.....+..+. ...+.++....+. ...+|.|+.|....
T Consensus 85 ~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~FD~i~~D~~~~ 139 (236)
T 3orh_A 85 EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLP--DGHFDGILYDTYPL 139 (236)
T ss_dssp EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSC--TTCEEEEEECCCCC
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccccc--ccCCceEEEeeeec
Confidence 688999999999888887777665544 4556655443322 45699999997543
No 391
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=28.72 E-value=1.2e+02 Score=23.80 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=44.6
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCC------CC----C-CHHHHHHHhcccCCCCEEEEEcc--CChHHHHHHHHcCCCc
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHM------PD----M-DGFKLHEQVGLEMDLPVIMMSVD--GCTQDVMKGVTHGACN 115 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l------~~----~-~g~~l~~~l~~~~~~~iIi~~~~--~~~~~~~~a~~~ga~~ 115 (184)
..+++.+.+.. ...|.+.++++. |. . +..+.++.++...+.||++=... ...+.+..+.++|++.
T Consensus 156 ~~e~~~~~ve~--~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~aGad~ 233 (365)
T 3sr7_A 156 PYQAGLQAVRD--LQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKT 233 (365)
T ss_dssp CHHHHHHHHHH--HCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHHTCCE
T ss_pred CHHHHHHHHHh--cCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHcCCCE
Confidence 34555555542 236777777754 22 2 23478888876667888765321 4578889999999998
Q ss_pred eEeC
Q 029986 116 YLLK 119 (184)
Q Consensus 116 ~l~k 119 (184)
..+-
T Consensus 234 I~V~ 237 (365)
T 3sr7_A 234 VDIS 237 (365)
T ss_dssp EECC
T ss_pred EEEe
Confidence 7763
No 392
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=28.61 E-value=2e+02 Score=22.10 Aligned_cols=79 Identities=16% Similarity=0.157 Sum_probs=50.6
Q ss_pred CCCeEEEEeCCHHH-HHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCC--CCCC-----CHHHHHHHhcc
Q 029986 16 AGLRVLVVDDDPIW-LRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVH--MPDM-----DGFKLHEQVGL 87 (184)
Q Consensus 16 ~~~~Ilivdd~~~~-~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~--l~~~-----~g~~l~~~l~~ 87 (184)
...+|++.|..|.. -..+...|.+.|..+....+..-+. +- + ..|.||+... +.++ -|--.+..+.+
T Consensus 146 k~~~V~v~EsrP~~qG~~la~~L~~~gI~vtli~Dsa~~~--~m--~-~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak 220 (315)
T 3ecs_A 146 KRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGY--IM--E-KADLVIVGAEGVVENGGIINKIGTNQMAVCAK 220 (315)
T ss_dssp CCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEECGGGHHH--HG--G-GCSEEEEECSEECTTSCEEEETTHHHHHHHHH
T ss_pred CeEEEEEecCCCcchHHHHHHHHHHcCCCEEEEehhHHHH--HH--H-hCCEEEECceEEecCCCeeehhhhHHHHHHHH
Confidence 45689999988853 2345677778899888887644443 22 1 4799998664 3333 24444444545
Q ss_pred cCCCCEEEEEcc
Q 029986 88 EMDLPVIMMSVD 99 (184)
Q Consensus 88 ~~~~~iIi~~~~ 99 (184)
..++|+++++..
T Consensus 221 ~~~vP~~V~a~~ 232 (315)
T 3ecs_A 221 AQNKPFYVVAES 232 (315)
T ss_dssp HTTCCEEEECCG
T ss_pred HhCCCEEEEecc
Confidence 578999988643
No 393
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=28.57 E-value=1.4e+02 Score=20.17 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=43.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCC-eE-EEECCHHHHHHHHHhcCCCccEEEEeCCCCC--CCHHHHHHHh
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLY-EV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPD--MDGFKLHEQV 85 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~-~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~--~~g~~l~~~l 85 (184)
.+|.-+|-++...+..+..+...+. .+ ....+..+...... ...+|+|++|.-... .+-.++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~i~~~~p~~~~~~~~~~~l~~~ 137 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT--TSPVDLVLADPPYNVDSADVDAILAAL 137 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC--SSCCSEEEECCCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc--CCCccEEEECCCCCcchhhHHHHHHHH
Confidence 4799999999999888888876654 22 34556665543321 456999999864443 2234455555
No 394
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=28.56 E-value=1.1e+02 Score=19.16 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=41.8
Q ss_pred CCCeEEEEeCCHHHH-----HHHHHHHHhcCCe-E-EEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc
Q 029986 16 AGLRVLVVDDDPIWL-----RILEKMLRKCLYE-V-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE 88 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~-----~~l~~~L~~~~~~-v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~ 88 (184)
..++|+++-+.-... ..+++.+...|++ + ....+..+....+ ..+|+||.-..+...- ...
T Consensus 17 ~~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~~~----~~~DlIi~t~~l~~~~--------~~~ 84 (110)
T 3czc_A 17 SMVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKGLA----SNYDIVVASNHLIHEL--------DGR 84 (110)
T ss_dssp -CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHHHG----GGCSEEEEETTTGGGT--------TTS
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhhcc----CCCcEEEECCchHHHh--------CcC
Confidence 356787777655422 2444566666765 3 3444555554432 2389999987655321 112
Q ss_pred CCCCEEEEEccCChHHH
Q 029986 89 MDLPVIMMSVDGCTQDV 105 (184)
Q Consensus 89 ~~~~iIi~~~~~~~~~~ 105 (184)
+..+++.+.+.-+.+..
T Consensus 85 ~~~~vi~i~~~l~~~ei 101 (110)
T 3czc_A 85 TNGKLIGLDNLMDDNEI 101 (110)
T ss_dssp CSSEEEEESSTTCHHHH
T ss_pred CCceEEEeeccCCHHHH
Confidence 44567766554444433
No 395
>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A
Probab=28.21 E-value=2.1e+02 Score=22.25 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhcCCCc-cEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE-eCCCCHHHH
Q 029986 49 RAEIALDMLRMSKNGY-DIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL-LKPIRIKEL 126 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~-dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l-~kP~~~~~l 126 (184)
+.++++++++.- ..+ ++.+++--++.. .++..+.++....+||+.--.-.+.....++++.|+.+++ +|+....=+
T Consensus 196 ~~~~a~~~~~~l-~~~~~i~~iEqP~~~~-d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi 273 (382)
T 2gdq_A 196 DAAAAFKWERYF-SEWTNIGWLEEPLPFD-QPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGI 273 (382)
T ss_dssp CHHHHHTTHHHH-TTCSCEEEEECCSCSS-CHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHH
T ss_pred CHHHHHHHHHHH-hhccCCeEEECCCCcc-cHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCH
Confidence 456666665532 224 677776555443 3455666655456776644333456778888888865554 778754333
No 396
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=28.19 E-value=59 Score=24.35 Aligned_cols=53 Identities=8% Similarity=0.201 Sum_probs=31.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh--cCCeEEEEC-CHHHHHHHHHhcCCCccEEEEeC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRK--CLYEVTKCN-RAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~--~~~~v~~~~-~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
.|+|+++..+..........-.. .++.|.... +..+..+.+. ...||++++=-
T Consensus 30 ~m~ill~~~~~~~~~l~q~l~~~l~~~h~V~~~~~~~~~~~~~L~--~~~pDliv~~~ 85 (260)
T 1zgh_A 30 LMNIIIATTKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVK--LINPEYILFPH 85 (260)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHTTTTEEEEEECSGGGCCHHHHH--HHCCSEEEESS
T ss_pred ceEEEEECChHHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHH--hcCCCEEEEec
Confidence 57999998877654443332222 357765443 3344556665 34589998743
No 397
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=28.05 E-value=2e+02 Score=21.98 Aligned_cols=108 Identities=16% Similarity=0.177 Sum_probs=58.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh-cCCeEEE-ECC-HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRK-CLYEVTK-CNR-AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~-~~~~v~~-~~~-~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~i 93 (184)
.+||.||.--..-...+..+... .++++.. +.. .+.+..... ......-.. .+--++++ .+.+-+
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~--~~g~~~~~~------~~~~~ll~----~~~~D~ 90 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALD--KYAIEAKDY------NDYHDLIN----DKDVEV 90 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHH--HHTCCCEEE------SSHHHHHH----CTTCCE
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHH--HhCCCCeee------CCHHHHhc----CCCCCE
Confidence 46899999877666555554423 3666553 332 222222222 111111111 12222222 234445
Q ss_pred EEEEccC--ChHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHcC
Q 029986 94 IMMSVDG--CTQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQQ 136 (184)
Q Consensus 94 Ii~~~~~--~~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~~ 136 (184)
++++... ..+.+..++++|..=|+-||+ +.++..+.+..+.+.
T Consensus 91 V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~ 137 (357)
T 3ec7_A 91 VIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKN 137 (357)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred EEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHh
Confidence 5554433 346777899999998999997 566777766665543
No 398
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=28.00 E-value=1.8e+02 Score=22.34 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=36.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc--CC---eE-EEECCHHHHHHHHHhcCCCccEEEEeCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKC--LY---EV-TKCNRAEIALDMLRMSKNGYDIVISDVHMP 74 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~--~~---~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~ 74 (184)
+..+|..||-++...+..++.+... ++ .+ ....++.+.+... ....+|+|++|...|
T Consensus 143 ~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~--~~~~fDlIi~d~~~p 205 (334)
T 1xj5_A 143 SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA--AEGSYDAVIVDSSDP 205 (334)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS--CTTCEEEEEECCCCT
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc--cCCCccEEEECCCCc
Confidence 3468999999999888888777531 11 22 3455665543321 134699999987544
No 399
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=27.97 E-value=98 Score=22.91 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=29.5
Q ss_pred HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 79 ~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
.++++.+++..++||++=..-.+.+.+..++..||+.+++
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVV 233 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAIS 233 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 5778888765578876544444478888889999999985
No 400
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=27.91 E-value=1.7e+02 Score=22.09 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=29.0
Q ss_pred CCCEEEEEccC--ChHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHcC
Q 029986 90 DLPVIMMSVDG--CTQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQQ 136 (184)
Q Consensus 90 ~~~iIi~~~~~--~~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~~ 136 (184)
.+-+++++... ..+.+..++++|.+=++-||+ +.++..+.+..+.+.
T Consensus 66 ~vD~V~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 116 (334)
T 3ohs_X 66 NVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSR 116 (334)
T ss_dssp TCCEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444443322 245666788888887888887 566666666665543
No 401
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=27.85 E-value=94 Score=23.99 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=42.8
Q ss_pred eEEEEeCCHHH---HHHHHHHHHhcCCeEEEEC-----CHHHHHHHHHh-cCCCccEEEEeCCCCCCCHHHHHHHhcccC
Q 029986 19 RVLVVDDDPIW---LRILEKMLRKCLYEVTKCN-----RAEIALDMLRM-SKNGYDIVISDVHMPDMDGFKLHEQVGLEM 89 (184)
Q Consensus 19 ~Ilivdd~~~~---~~~l~~~L~~~~~~v~~~~-----~~~~~~~~l~~-~~~~~dlvilD~~l~~~~g~~l~~~l~~~~ 89 (184)
|++||.|.... .+.+...|+..|+.+..+. +.+...+. .. .+..+|+||- +.++.-.++.+.+....
T Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIa---vGGGsv~D~aK~vA~~~ 111 (354)
T 3ce9_A 36 RVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIG---IGGGKAIDAVKYMAFLR 111 (354)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEE---EESHHHHHHHHHHHHHH
T ss_pred eEEEEECccHHHHHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEE---ECChHHHHHHHHHHhhc
Confidence 78888776543 3445566666676554332 33333333 32 2456788774 23555566666664334
Q ss_pred CCCEEEEEc
Q 029986 90 DLPVIMMSV 98 (184)
Q Consensus 90 ~~~iIi~~~ 98 (184)
.+|+|.+.+
T Consensus 112 ~~p~i~IPT 120 (354)
T 3ce9_A 112 KLPFISVPT 120 (354)
T ss_dssp TCCEEEEES
T ss_pred CCCEEEecC
Confidence 677776644
No 402
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=27.83 E-value=1.5e+02 Score=21.35 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=37.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEEC-------CHHHHHHHHHhcCCCccEEEEeCCC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTKCN-------RAEIALDMLRMSKNGYDIVISDVHM 73 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~-------~~~~~~~~l~~~~~~~dlvilD~~l 73 (184)
|+|+|....-.+-..+...|.+.|+.|.... +.+...+.+.. ..+|+||--...
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~--~~~d~vi~~a~~ 66 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQE--IRPHIIIHCAAY 66 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHH--HCCSEEEECCCC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHh--cCCCEEEECCcc
Confidence 4799999888888888888887788887653 44444444442 258998865433
No 403
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=27.66 E-value=1.9e+02 Score=23.23 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=50.2
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccC---ChHHHHHHHHcCCCceE-eCCC---
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDG---CTQDVMKGVTHGACNYL-LKPI--- 121 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~---~~~~~~~a~~~ga~~~l-~kP~--- 121 (184)
+..++++.+...-..++++++.--++..|. +-.++++....+|| +.... +.....++++.|+.+++ +|+.
T Consensus 274 t~~eai~~~~~~l~~y~i~~iEdPl~~dD~-~g~~~l~~~~~ipI--~gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qiG 350 (436)
T 2al1_A 274 TGPQLADLYHSLMKRYPIVSIEDPFAEDDW-EAWSHFFKTAGIQI--VADDLTVTNPKRIATAIEKKAADALLLKVNQIG 350 (436)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTCH-HHHHHHHTTCCSEE--EESTTTTTCHHHHHHHHHTTCCSEEEECHHHHC
T ss_pred CHHHHHHHHHHHHHhCCcEEEECCCCCcCH-HHHHHHHhcCCCeE--EECCcccCCHHHHHHHHHhCCCCEEEechhhcC
Confidence 446665554321123789999877776653 44555554444555 45553 46788889999986665 6665
Q ss_pred CHHHHHHHHHHHHc
Q 029986 122 RIKELRNIWQHVAQ 135 (184)
Q Consensus 122 ~~~~l~~~l~~~~~ 135 (184)
...+..++...+..
T Consensus 351 Gitea~~ia~lA~~ 364 (436)
T 2al1_A 351 TLSESIKAAQDSFA 364 (436)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 44455555555544
No 404
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=27.40 E-value=1.7e+02 Score=22.08 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=35.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh--cC---CeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRK--CL---YEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMP 74 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~--~~---~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~ 74 (184)
..+|..||-++...+..++.+.. .+ -.+ ....++.+.+. .....+|+||+|...+
T Consensus 119 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~---~~~~~fD~Ii~d~~~~ 179 (304)
T 2o07_A 119 VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK---QNQDAFDVIITDSSDP 179 (304)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH---TCSSCEEEEEEECC--
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh---hCCCCceEEEECCCCC
Confidence 46899999999998888877754 11 122 24556655443 2245699999998644
No 405
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=27.35 E-value=1.8e+02 Score=21.19 Aligned_cols=63 Identities=10% Similarity=-0.002 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCeEEEECC---HH---HHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 29 WLRILEKMLRKCLYEVTKCNR---AE---IALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 29 ~~~~l~~~L~~~~~~v~~~~~---~~---~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
....+...+++.||.+..+.. .+ +.++.+. ...+|-+|+-....... +.++.+.. ++|+|++.
T Consensus 33 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~--~~~vdgiI~~~~~~~~~--~~~~~l~~--~iPvV~i~ 101 (303)
T 3kke_A 33 MFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVS--EGRVDGVLLQRREDFDD--DMLAAVLE--GVPAVTIN 101 (303)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHH--SCSSSEEEECCCTTCCH--HHHHHHHT--TSCEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHH--hCCCcEEEEecCCCCcH--HHHHHHhC--CCCEEEEC
Confidence 444556666667887665432 22 2344443 45678777743322211 14555543 67777764
No 406
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=27.33 E-value=1.8e+02 Score=21.22 Aligned_cols=55 Identities=11% Similarity=0.044 Sum_probs=38.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCC-eE-EEECCHHHHHHHHHhcCCCccEEEEeCC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLY-EV-TKCNRAEIALDMLRMSKNGYDIVISDVH 72 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~-~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~ 72 (184)
.+|.-+|-++...+.++..++..|. .+ ....+.......+......+|+|++|.-
T Consensus 109 ~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~P 165 (274)
T 3ajd_A 109 GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAP 165 (274)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcCC
Confidence 5899999999999999988887765 23 3455665544332111346999999953
No 407
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=27.32 E-value=38 Score=26.28 Aligned_cols=70 Identities=23% Similarity=0.380 Sum_probs=46.5
Q ss_pred CeEEEECCHHHHHHHHH-hcCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCc
Q 029986 42 YEVTKCNRAEIALDMLR-MSKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACN 115 (184)
Q Consensus 42 ~~v~~~~~~~~~~~~l~-~~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~ 115 (184)
|++- ..+..+++.... ....+.|+|++- |.+.-+++++.++.. +++|+..+-...+-..+..|.+.|..|
T Consensus 224 YQmd-paN~~EAlre~~~Di~EGAD~vMVK---Pal~YLDIi~~vk~~~p~~P~aaYqVSGEYAMikaAa~~GwiD 295 (330)
T 1pv8_A 224 YQLP-PGARGLALRAVDRDVREGADMLMVK---PGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFD 295 (330)
T ss_dssp --CC-TTCHHHHHHHHHHHHHTTCSBEEEE---SCGGGHHHHHHHHHHSTTSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred cCCC-CCCHHHHHHHHHhhHHhCCceEEEe---cCccHHHHHHHHHHhcCCCCeEEEEcCcHHHHHHHHHHcCCcc
Confidence 4443 335566665553 234678999986 455567888888755 499999987776667777777777654
No 408
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=27.30 E-value=1.4e+02 Score=20.42 Aligned_cols=73 Identities=12% Similarity=0.266 Sum_probs=38.5
Q ss_pred CccEEEEeCC-CCCCCHH-HHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 63 GYDIVISDVH-MPDMDGF-KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 63 ~~dlvilD~~-l~~~~g~-~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
.+.++++|-- .-..+.. .+.+.+...+...++++++.. .......+.....-+-.+|++.+++...+......
T Consensus 126 ~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~-~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD-PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESC-GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCC-hHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 3678888742 1111222 234444332222333333332 22233334444556778899999999988877653
No 409
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=27.28 E-value=2e+02 Score=21.59 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=25.6
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 17 GLRVLVVDDDPI---WLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 17 ~~~Ilivdd~~~---~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
+.+|++++.|.. ..+.+..+....|..+....+..+....+... ..||++|+|.
T Consensus 134 G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiDT 190 (296)
T 2px0_A 134 HKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVDT 190 (296)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEEC
T ss_pred CCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEeC
Confidence 456777776652 12223332222333332223333333333222 4589999994
No 410
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Probab=27.13 E-value=2.2e+02 Score=22.38 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=39.3
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE-eCCCCHHHH
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL-LKPIRIKEL 126 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l-~kP~~~~~l 126 (184)
+.++++++++.- ..+++.+++--++..+ ++..+.++....+||+.--+-.+.....++++.|+.|++ +|+....=+
T Consensus 218 ~~~~A~~~~~~L-~~~~i~~iEeP~~~~d-~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGi 294 (394)
T 3mkc_A 218 DWYEVARLLNSI-EDLELYFAEATLQHDD-LSGHAKLVENTRSRICGAEMSTTRFEAEEWITKGKVHLLQSDYNRCGGL 294 (394)
T ss_dssp CHHHHHHHHHHT-GGGCCSEEESCSCTTC-HHHHHHHHHHCSSCBEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHH
T ss_pred CHHHHHHHHHHh-hhcCCeEEECCCCchh-HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCeEecCccccCCH
Confidence 445555555421 1234445554443322 344455544445676543222335677788888876665 677654333
No 411
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=27.02 E-value=1.5e+02 Score=21.94 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcC-CeEEEECCHHH---HHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 30 LRILEKMLRKCL-YEVTKCNRAEI---ALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 30 ~~~l~~~L~~~~-~~v~~~~~~~~---~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
.+.|...++..| -.+..++ +.+ .+.++........++++|..+.-....++++.+....++++.++.
T Consensus 43 ~~~l~~a~~~~g~~i~Va~S-GkDS~vLL~Ll~~~~~~i~vv~iDtg~~~~et~~~v~~~~~~~gi~l~v~~ 113 (275)
T 2goy_A 43 QDILKAAFEHFGDELWISFS-GAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLS 113 (275)
T ss_dssp HHHHHHHHHHHSTTEEEECC-SSTTHHHHHHHHHHCTTCCEEEECCSCCCHHHHHHHHHHHHHHTCCCEEEC
T ss_pred HHHHHHHHHHcCCCEEEEee-cHHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHCCeEEEEe
Confidence 445666666653 3344555 544 344444334457899999887655667888888555567777664
No 412
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=26.98 E-value=78 Score=22.33 Aligned_cols=33 Identities=30% Similarity=0.227 Sum_probs=25.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCN 48 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~ 48 (184)
.+++|+|....--.-..+...|.+.|+.|..+.
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~ 52 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMV 52 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEE
Confidence 467899999888888888888877788876544
No 413
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=26.93 E-value=2.1e+02 Score=23.48 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=57.0
Q ss_pred eCCHHHHHHHHHHHHhcCCeEE--EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCC
Q 029986 24 DDDPIWLRILEKMLRKCLYEVT--KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGC 101 (184)
Q Consensus 24 dd~~~~~~~l~~~L~~~~~~v~--~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~ 101 (184)
..+......+...-...+-.+. ...+.+....++.. .|++++-.. .+.-|+.+++.+. ..+|+|...
T Consensus 364 ~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----aD~~v~PS~-~E~fgl~~lEAma--~G~PvI~s~---- 432 (536)
T 3vue_A 364 TGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAG----ADVLAVPSR-FEPCGLIQLQGMR--YGTPCACAS---- 432 (536)
T ss_dssp CBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--TTCCEEECS----
T ss_pred ccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHHHHh----hheeecccc-cCCCCHHHHHHHH--cCCCEEEcC----
Confidence 3445455555544444433332 22334444444431 588887543 2444555666553 467877532
Q ss_pred hHHHHHHHHcCCCce----------EeCCCCHHHHHHHHHHHHc
Q 029986 102 TQDVMKGVTHGACNY----------LLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 102 ~~~~~~a~~~ga~~~----------l~kP~~~~~l~~~l~~~~~ 135 (184)
..-..+....|.++| +..|.+.+.|..++++++.
T Consensus 433 ~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~ 476 (536)
T 3vue_A 433 TGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIK 476 (536)
T ss_dssp CTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHH
Confidence 344556667777777 5667778889888887664
No 414
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=26.86 E-value=1.4e+02 Score=19.56 Aligned_cols=84 Identities=8% Similarity=0.044 Sum_probs=49.4
Q ss_pred EEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCC
Q 029986 22 VVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGC 101 (184)
Q Consensus 22 ivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~ 101 (184)
++|........|...|...--.-....-..+....++. ....+||+--+....+-...+..+-...++|++++. +
T Consensus 1 ~~~~~~~i~~~l~~~L~~A~~~gkl~~G~~~v~Kai~~--gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~---s 75 (126)
T 2xzm_U 1 MADQNQQLNEVLAKVIKSSNCQDAISKGLHEVLRTIEA--KQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVP---K 75 (126)
T ss_dssp --CCTHHHHHHHHHHHTTTTSSSCEEESHHHHHHHHHH--TCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEES---C
T ss_pred CCcccccHHHHHHHHHHHHHHcCCEeecHHHHHHHHHc--CCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEEC---C
Confidence 35667777778888887531111122245677777773 447888886655444555555555445689998764 3
Q ss_pred hHHHHHHHH
Q 029986 102 TQDVMKGVT 110 (184)
Q Consensus 102 ~~~~~~a~~ 110 (184)
......+..
T Consensus 76 k~~LG~a~G 84 (126)
T 2xzm_U 76 RASLGEYLG 84 (126)
T ss_dssp SHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 455555554
No 415
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=26.84 E-value=97 Score=22.69 Aligned_cols=85 Identities=14% Similarity=0.031 Sum_probs=49.9
Q ss_pred CHHHHHHHHHhcCCCccEEE---EeCCC-CCC-CHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCH
Q 029986 49 RAEIALDMLRMSKNGYDIVI---SDVHM-PDM-DGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI 123 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvi---lD~~l-~~~-~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~ 123 (184)
+..+.++.+. +.+.|.+= +|-+. |.. -|..+++.++...+.-+-++.. ....++..+.++||+.+.......
T Consensus 27 ~l~~~i~~~~--~~gad~lhvDvmDG~fvpn~t~G~~~v~~lr~~~~~DvhLMv~-~p~~~i~~~~~aGAd~itvH~ea~ 103 (237)
T 3cu2_A 27 QLNEEVTTLL--ENQINVLHFDIADGQFSSLFTVGAIGIKYFPTHCFKDVHLMVR-NQLEVAKAVVANGANLVTLQLEQY 103 (237)
T ss_dssp GHHHHHHHHH--HTTCCEEEEEEEBSSSSSCBCBCTHHHHTSCTTSEEEEEEECS-CHHHHHHHHHHTTCSEEEEETTCT
T ss_pred cHHHHHHHHH--HcCCCEEEEEEecCccccchhhhHHHHHHHhhhCCCCeEEEEE-CHHHHHHHHHHcCCCEEEEecCCc
Confidence 3444555554 23345443 44332 322 3668888886432124444433 335678889999999877776666
Q ss_pred HHHHHHHHHHHcC
Q 029986 124 KELRNIWQHVAQQ 136 (184)
Q Consensus 124 ~~l~~~l~~~~~~ 136 (184)
..+.+.++.+.+.
T Consensus 104 ~~~~~~i~~i~~~ 116 (237)
T 3cu2_A 104 HDFALTIEWLAKQ 116 (237)
T ss_dssp TSHHHHHHHHTTC
T ss_pred ccHHHHHHHHHhc
Confidence 6677777777554
No 416
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=26.78 E-value=1.9e+02 Score=23.50 Aligned_cols=56 Identities=11% Similarity=0.011 Sum_probs=39.2
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE-EECCHHHHHHHHHhcCCCccEEEEeCC
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLYEVT-KCNRAEIALDMLRMSKNGYDIVISDVH 72 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~ 72 (184)
++..-+|.-+|-++...+.++.-++..|..+. ...+..+..... ...+|+|++|.-
T Consensus 123 ~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~---~~~FD~Il~D~P 179 (464)
T 3m6w_A 123 MGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAF---GTYFHRVLLDAP 179 (464)
T ss_dssp TTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHH---CSCEEEEEEECC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhc---cccCCEEEECCC
Confidence 33334799999999999999999988776533 344555544322 356999999863
No 417
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=26.52 E-value=2e+02 Score=21.53 Aligned_cols=98 Identities=9% Similarity=0.024 Sum_probs=61.6
Q ss_pred HHHHHHhcCCeEE--EECCHHHHHHHHHhcCCCccEEEEeCCCC---CCC--HHHHHHHh---cccCCCCEEEEEccCCh
Q 029986 33 LEKMLRKCLYEVT--KCNRAEIALDMLRMSKNGYDIVISDVHMP---DMD--GFKLHEQV---GLEMDLPVIMMSVDGCT 102 (184)
Q Consensus 33 l~~~L~~~~~~v~--~~~~~~~~~~~l~~~~~~~dlvilD~~l~---~~~--g~~l~~~l---~~~~~~~iIi~~~~~~~ 102 (184)
.-..|+..|+.+. -+.++-..+..+. .-.+|.|=+|-.+- ..+ ...+++.+ ....++.+|+= .-.+.
T Consensus 168 ~l~~Lr~~G~~ialDDFGtG~ssl~~L~--~l~~d~iKID~sfv~~i~~~~~~~~iv~~ii~la~~lg~~vvAE-GVEt~ 244 (294)
T 2r6o_A 168 CLDALRARGVRLALDDFGTGYSSLSYLS--QLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGMEVVAE-GIETA 244 (294)
T ss_dssp HHHHHHHHTCEEEEEEETSSCBCHHHHH--HSCCCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCEEEEC-CCCSH
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHH--hCCCCEEEECHHHHhhhhcChHHHHHHHHHHHHHHHCCCEEEEe-cCCcH
Confidence 3445666787765 5666666667766 45689999985332 122 33344444 22345555443 34456
Q ss_pred HHHHHHHHcCCCc----eEeCCCCHHHHHHHHHHH
Q 029986 103 QDVMKGVTHGACN----YLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 103 ~~~~~a~~~ga~~----~l~kP~~~~~l~~~l~~~ 133 (184)
+....+.+.|++. |+.||...+++...+..-
T Consensus 245 ~q~~~l~~lG~d~~QGy~~~~P~~~~~~~~~l~~~ 279 (294)
T 2r6o_A 245 QQYAFLRDRGCEFGQGNLMSTPQAADAFASLLDRQ 279 (294)
T ss_dssp HHHHHHHHTTCCEECSTTTCCCEEHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEcCccCCCCCHHHHHHHHHhh
Confidence 7777788889863 479999999998877654
No 418
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=26.52 E-value=1.5e+02 Score=23.26 Aligned_cols=76 Identities=14% Similarity=0.023 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHH
Q 029986 50 AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNI 129 (184)
Q Consensus 50 ~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~ 129 (184)
.++..+++.. .|+.++-..- ..-|.-+++.+. ..+|||. +..... +....|..+++..|-+.++|.++
T Consensus 305 ~~~l~~~~~~----adv~v~pS~~-E~~g~~~lEAmA--~G~PVV~-~~~g~~----e~v~~~~~G~lv~~~d~~~la~a 372 (413)
T 2x0d_A 305 LEDYADLLKR----SSIGISLMIS-PHPSYPPLEMAH--FGLRVIT-NKYENK----DLSNWHSNIVSLEQLNPENIAET 372 (413)
T ss_dssp HHHHHHHHHH----CCEEECCCSS-SSCCSHHHHHHH--TTCEEEE-ECBTTB----CGGGTBTTEEEESSCSHHHHHHH
T ss_pred HHHHHHHHHh----CCEEEEecCC-CCCCcHHHHHHh--CCCcEEE-eCCCcc----hhhhcCCCEEEeCCCCHHHHHHH
Confidence 4555555542 4676663321 223444555553 4688886 443322 34466888999999999999999
Q ss_pred HHHHHcCC
Q 029986 130 WQHVAQQP 137 (184)
Q Consensus 130 l~~~~~~~ 137 (184)
+..++...
T Consensus 373 i~~ll~~~ 380 (413)
T 2x0d_A 373 LVELCMSF 380 (413)
T ss_dssp HHHHHHHT
T ss_pred HHHHHcCH
Confidence 99988643
No 419
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=26.26 E-value=14 Score=27.08 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 79 FKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 79 ~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
++++++++...++|+|....-.+.+.+.++++.|+++.+.
T Consensus 189 ~~~~~~i~~~~~iPvia~GGI~~~~d~~~~~~~Gad~v~v 228 (247)
T 3tdn_A 189 TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 228 (247)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCcHhhc
Confidence 4566777655578888877666678888888889887754
No 420
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=26.06 E-value=83 Score=22.03 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=31.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEE
Q 029986 19 RVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVIS 69 (184)
Q Consensus 19 ~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvil 69 (184)
+|+|+|=-.-+...+.+.|+..|+++....+.++. . . +|.||+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l----~--~--~D~lil 46 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV----L--A--ADKLFL 46 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH----H--H--CSEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH----h--C--CCEEEE
Confidence 69999855445567888899999998888876432 2 1 578887
No 421
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=26.04 E-value=1.7e+02 Score=20.29 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=46.8
Q ss_pred ECCHHHHHHHHHh-cCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHH
Q 029986 47 CNRAEIALDMLRM-SKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIK 124 (184)
Q Consensus 47 ~~~~~~~~~~l~~-~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~ 124 (184)
..+.+++.+.+.. ...+.+++-+.... .++.+.++.+++. +.-.+|-...-.+.+....+.+.|++.. .-|....
T Consensus 18 ~~~~~~~~~~~~~~~~~G~~~iev~~~~--~~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~~~ 94 (205)
T 1wa3_A 18 ANSVEEAKEKALAVFEGGVHLIEITFTV--PDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI-VSPHLDE 94 (205)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE-ECSSCCH
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCCEE-EcCCCCH
Confidence 3455555555432 13456777555543 3566677777643 3222333433346778889999999855 6676555
Q ss_pred HHHHHHH
Q 029986 125 ELRNIWQ 131 (184)
Q Consensus 125 ~l~~~l~ 131 (184)
++.+..+
T Consensus 95 ~~~~~~~ 101 (205)
T 1wa3_A 95 EISQFCK 101 (205)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 422
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=25.90 E-value=1.1e+02 Score=22.20 Aligned_cols=79 Identities=24% Similarity=0.147 Sum_probs=52.7
Q ss_pred HHHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEE------EeCCCCCCCHHHHHHHhcc----cCCCCEEEEEccCCh
Q 029986 35 KMLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVI------SDVHMPDMDGFKLHEQVGL----EMDLPVIMMSVDGCT 102 (184)
Q Consensus 35 ~~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvi------lD~~l~~~~g~~l~~~l~~----~~~~~iIi~~~~~~~ 102 (184)
+.|...|. .++...+..+++..... +.+.|= -|+ +.+|+++++.+.. ...-.-|+.++..+.
T Consensus 96 ~~L~~~GI~vn~TlifS~~Qa~~Aa~A---Ga~yISPfvgRi~d~---~~dG~~~v~~i~~~~~~~~~~t~ilaAS~R~~ 169 (212)
T 3r8r_A 96 RALTDLGIKTNVTLIFNANQALLAARA---GATYVSPFLGRLDDI---GHNGLDLISEVKQIFDIHGLDTQIIAASIRHP 169 (212)
T ss_dssp HHHHHTTCCEEEEEECSHHHHHHHHHH---TCSEEEEBHHHHHHT---TSCHHHHHHHHHHHHHHHTCCCEEEEBSCCSH
T ss_pred HHHHHCCCcEEEEEeCCHHHHHHHHHc---CCeEEEeccchhhhc---CCChHHHHHHHHHHHHHcCCCCEEEEecCCCH
Confidence 45566664 56677788888876653 244442 133 5689998887732 233446667788899
Q ss_pred HHHHHHHHcCCCceEeCC
Q 029986 103 QDVMKGVTHGACNYLLKP 120 (184)
Q Consensus 103 ~~~~~a~~~ga~~~l~kP 120 (184)
..+.++..+|++- ++=|
T Consensus 170 ~~v~~~a~~G~d~-~Tip 186 (212)
T 3r8r_A 170 QHVTEAALRGAHI-GTMP 186 (212)
T ss_dssp HHHHHHHHTTCSE-EEEC
T ss_pred HHHHHHHHcCCCE-EEcC
Confidence 9999999999994 4444
No 423
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=25.88 E-value=2.1e+02 Score=21.49 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=38.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHh--cC----CeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRK--CL----YEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~--~~----~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~ 75 (184)
+..+|..||-++...+..++.+.. .+ -.+ ....++.+.+.. ....+|+|++|...+.
T Consensus 100 ~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~---~~~~fD~Ii~d~~~~~ 163 (314)
T 1uir_A 100 TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER---TEERYDVVIIDLTDPV 163 (314)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH---CCCCEEEEEEECCCCB
T ss_pred CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh---cCCCccEEEECCCCcc
Confidence 356899999999988888877653 11 122 345666655432 2456999999986654
No 424
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=25.88 E-value=2.4e+02 Score=22.05 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=35.1
Q ss_pred CCccEEEEeCCC-------CCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 62 NGYDIVISDVHM-------PDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 62 ~~~dlvilD~~l-------~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
..+|.+.++..- +..+ ++-+.++++..++||++ ..-.+.+.+..+.+.|++...+
T Consensus 177 agad~i~i~~~~~~~~~~~~~~~-~~~i~~l~~~~~~pvi~-ggi~t~e~a~~~~~~Gad~i~v 238 (393)
T 2qr6_A 177 AGADLLVIQGTLISAEHVNTGGE-ALNLKEFIGSLDVPVIA-GGVNDYTTALHMMRTGAVGIIV 238 (393)
T ss_dssp TTCSEEEEECSSCCSSCCCC------CHHHHHHHCSSCEEE-ECCCSHHHHHHHHTTTCSEEEE
T ss_pred CCCCEEEEeCCccccccCCCccc-HHHHHHHHHhcCCCEEE-CCcCCHHHHHHHHHcCCCEEEE
Confidence 457888887431 1112 23345565445788887 4455678899999999998876
No 425
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=25.81 E-value=1.7e+02 Score=20.28 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=38.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCC--eEEEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLY--EVTKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
.+.+|.+.. .......+...+...|. .+..+.+..+++..+. ....|+++.+.
T Consensus 147 ~g~~i~~~~-g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~--~g~vDa~~~~~ 201 (259)
T 2v25_A 147 KGANIGVAQ-AATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALD--AKRVDAFSVDK 201 (259)
T ss_dssp TTCEEEEET-TCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHH--TTSSSEEEEEH
T ss_pred CCCEEEEec-CCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHH--cCCCcEEEecH
Confidence 356777764 44455667777776654 6678889999999987 56689999874
No 426
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=25.77 E-value=1.7e+02 Score=20.26 Aligned_cols=84 Identities=11% Similarity=-0.101 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCeEEE-EC---CHHHHHHHHHhcCCCccEE-EEeCCC---CCCCHH-HHHHHhcccCCCCEEEEEccC
Q 029986 30 LRILEKMLRKCLYEVTK-CN---RAEIALDMLRMSKNGYDIV-ISDVHM---PDMDGF-KLHEQVGLEMDLPVIMMSVDG 100 (184)
Q Consensus 30 ~~~l~~~L~~~~~~v~~-~~---~~~~~~~~l~~~~~~~dlv-ilD~~l---~~~~g~-~l~~~l~~~~~~~iIi~~~~~ 100 (184)
...+.+.+.+.|..+.. .. +..+..+.+. ....|.| +.=... ++.+.. +.++++... +.|+++... -
T Consensus 92 ~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~--~~g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~-~~pi~v~GG-I 167 (207)
T 3ajx_A 92 IAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVR--ALGAKFVEMHAGLDEQAKPGFDLNGLLAAGEKA-RVPFSVAGG-V 167 (207)
T ss_dssp HHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHH--HTTCSEEEEECCHHHHTSTTCCTHHHHHHHHHH-TSCEEEESS-C
T ss_pred HHHHHHHHHHcCCceEEEEecCCChHHHHHHHH--HhCCCEEEEEecccccccCCCchHHHHHHhhCC-CCCEEEECC-c
Confidence 33444555554555533 32 4444333333 2247877 542211 122212 444444322 577776644 3
Q ss_pred ChHHHHHHHHcCCCceE
Q 029986 101 CTQDVMKGVTHGACNYL 117 (184)
Q Consensus 101 ~~~~~~~a~~~ga~~~l 117 (184)
+.+....++++||+.++
T Consensus 168 ~~~~~~~~~~aGad~vv 184 (207)
T 3ajx_A 168 KVATIPAVQKAGAEVAV 184 (207)
T ss_dssp CGGGHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHcCCCEEE
Confidence 46778888999999875
No 427
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=25.55 E-value=1.9e+02 Score=20.70 Aligned_cols=14 Identities=14% Similarity=0.078 Sum_probs=6.4
Q ss_pred HHHHHHhcCCeEEE
Q 029986 33 LEKMLRKCLYEVTK 46 (184)
Q Consensus 33 l~~~L~~~~~~v~~ 46 (184)
+...+++.||.+..
T Consensus 29 i~~~~~~~g~~~~~ 42 (276)
T 3jy6_A 29 ISSILESRGYIGVL 42 (276)
T ss_dssp HHHHHHTTTCEEEE
T ss_pred HHHHHHHCCCEEEE
Confidence 33344444555443
No 428
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=25.46 E-value=72 Score=23.05 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=44.1
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcCC--eE-EEECCHHHHHHHHHhc--CCCccEEEEeCCCCCCCHHHHHHHh
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLY--EV-TKCNRAEIALDMLRMS--KNGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~~--~v-~~~~~~~~~~~~l~~~--~~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
.+++.+|.-+|-++...+..+..++..|. .+ ....+..+.+..+... ...+|+||+|.. ..+-..+++.+
T Consensus 82 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~ 156 (242)
T 3r3h_A 82 LPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDAD--KTNYLNYYELA 156 (242)
T ss_dssp SCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESC--GGGHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCC--hHHhHHHHHHH
Confidence 44456899999988877777777776653 23 3456776666544211 256999999975 23334444444
No 429
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.36 E-value=2.1e+02 Score=23.31 Aligned_cols=73 Identities=11% Similarity=0.129 Sum_probs=42.6
Q ss_pred CCccEEEEeC--CCCC--CCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 62 NGYDIVISDV--HMPD--MDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 62 ~~~dlvilD~--~l~~--~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
..+.++|+|- .+.. ..++..+..+-.....|+|++++....... ..+..-+..+-.+|.+.+++...+..+..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~~~~l-~~l~~r~~~i~f~~~~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKM-RPFDRVCLDIQFRRPDANSIKSRLMTIAI 223 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSSTT-GGGTTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCCCCccc-hhhHhceEEEEeCCCCHHHHHHHHHHHHH
Confidence 3468999975 2332 234443333323356788888765432222 22333344566788899998888877654
No 430
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=25.19 E-value=1.8e+02 Score=20.31 Aligned_cols=108 Identities=11% Similarity=-0.019 Sum_probs=53.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECC-HHHHHHHHHhcCCCccEEEEeCCCCCCCH-HHHHHHhcc-cCCCCE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNR-AEIALDMLRMSKNGYDIVISDVHMPDMDG-FKLHEQVGL-EMDLPV 93 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~-~~~~~~~l~~~~~~~dlvilD~~l~~~~g-~~l~~~l~~-~~~~~i 93 (184)
+..|.++|.++...+.+.. ..++.+....- ..+.+.... -...|++|+-.. +... ..++...+. .+...+
T Consensus 23 g~~v~vid~~~~~~~~l~~---~~~~~~i~gd~~~~~~l~~a~--i~~ad~vi~~~~--~d~~n~~~~~~a~~~~~~~~i 95 (218)
T 3l4b_C 23 KYGVVIINKDRELCEEFAK---KLKATIIHGDGSHKEILRDAE--VSKNDVVVILTP--RDEVNLFIAQLVMKDFGVKRV 95 (218)
T ss_dssp TCCEEEEESCHHHHHHHHH---HSSSEEEESCTTSHHHHHHHT--CCTTCEEEECCS--CHHHHHHHHHHHHHTSCCCEE
T ss_pred CCeEEEEECCHHHHHHHHH---HcCCeEEEcCCCCHHHHHhcC--cccCCEEEEecC--CcHHHHHHHHHHHHHcCCCeE
Confidence 4568888988876655442 23555433221 122333322 345799887542 2111 112222233 344455
Q ss_pred EEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHHcC
Q 029986 94 IMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVAQQ 136 (184)
Q Consensus 94 Ii~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~~ 136 (184)
+..+ .+..+......+|++..+. |. ......+...+..
T Consensus 96 ia~~--~~~~~~~~l~~~G~d~vi~-p~--~~~~~~l~~~~~~ 133 (218)
T 3l4b_C 96 VSLV--NDPGNMEIFKKMGITTVLN-LT--TLITNTVEALIFP 133 (218)
T ss_dssp EECC--CSGGGHHHHHHHTCEECCC-HH--HHHHHHHHHHHCT
T ss_pred EEEE--eCcchHHHHHHCCCCEEEC-HH--HHHHHHHHHHhcc
Confidence 5443 3455556667789875444 42 4445555554443
No 431
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=25.17 E-value=2.7e+02 Score=22.44 Aligned_cols=109 Identities=7% Similarity=-0.072 Sum_probs=62.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCe---EEEECC--HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYE---VTKCNR--AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDL 91 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~---v~~~~~--~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~ 91 (184)
+.+++|+..+....+.+...+...|.. |..... .++....+. . .|+.++-... +-|..+++.+. ..+
T Consensus 406 ~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~--~--adv~v~ps~~--~~g~~~lEAma--~G~ 477 (568)
T 2vsy_A 406 DSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYR--H--ADLFLDTHPY--NAHTTASDALW--TGC 477 (568)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGG--G--CSEEECCSSS--CCSHHHHHHHH--TTC
T ss_pred CcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHh--c--CCEEeeCCCC--CCcHHHHHHHh--CCC
Confidence 567778873444566777777776543 544433 345555554 2 5887765443 45666677663 468
Q ss_pred CEEEEEccCChH--HHHHHHHcCCCceEeCCCCHHHHHHHHHHHHc
Q 029986 92 PVIMMSVDGCTQ--DVMKGVTHGACNYLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 92 ~iIi~~~~~~~~--~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~~ 135 (184)
|||.+....... ...-....|..+++.. +.+++.+.+..++.
T Consensus 478 Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~--~~~~la~~i~~l~~ 521 (568)
T 2vsy_A 478 PVLTTPGETFAARVAGSLNHHLGLDEMNVA--DDAAFVAKAVALAS 521 (568)
T ss_dssp CEEBCCCSSGGGSHHHHHHHHHTCGGGBCS--SHHHHHHHHHHHHH
T ss_pred CEEeccCCCchHHHHHHHHHHCCChhhhcC--CHHHHHHHHHHHhc
Confidence 888643211111 1111233477666654 77888888887765
No 432
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=25.10 E-value=1.9e+02 Score=21.33 Aligned_cols=55 Identities=22% Similarity=0.278 Sum_probs=36.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc--C---CeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC--L---YEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMP 74 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~--~---~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~ 74 (184)
..+|..||-++...+..++.+... + -.+ ....++.+.+ ......+|+|++|...+
T Consensus 99 ~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l---~~~~~~fD~Ii~d~~~~ 159 (275)
T 1iy9_A 99 VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHI---AKSENQYDVIMVDSTEP 159 (275)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHH---HTCCSCEEEEEESCSSC
T ss_pred CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHH---hhCCCCeeEEEECCCCC
Confidence 458999999999988888777431 1 122 2455555443 22245699999998654
No 433
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=24.95 E-value=1.9e+02 Score=22.39 Aligned_cols=56 Identities=4% Similarity=0.033 Sum_probs=38.0
Q ss_pred CCCccEEEEeCCCCC--C----------CHHHHHHHhcccC-CCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 61 KNGYDIVISDVHMPD--M----------DGFKLHEQVGLEM-DLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 61 ~~~~dlvilD~~l~~--~----------~g~~l~~~l~~~~-~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
+.+.|.|.+.-.... . -.+++++.++... ++|||.-..-.+.+.+.+++. ||+...
T Consensus 155 ~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~ 223 (350)
T 3b0p_A 155 EAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVM 223 (350)
T ss_dssp HTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEE
T ss_pred HcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEE
Confidence 456788887653211 0 1357788886554 789888776677888888887 888664
No 434
>4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A
Probab=24.89 E-value=1.8e+02 Score=22.84 Aligned_cols=86 Identities=10% Similarity=0.041 Sum_probs=52.6
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE-eCCC---CHH
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL-LKPI---RIK 124 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l-~kP~---~~~ 124 (184)
+..+++++++.- ..+++.++.-=++..+.++..+.++....+||..=-+-.+.....++++.|+.|++ +|+. ...
T Consensus 221 ~~~~A~~~~~~l-~~~~~~~iEeP~~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit 299 (388)
T 4h83_A 221 KPAVAVDLSRRI-ADLNIRWFEEPVEWHNDKRSMRDVRYQGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWSGGPT 299 (388)
T ss_dssp CHHHHHHHHHHT-TTSCCCCEESCBCSTTHHHHHHHHHHHSSSCEEECTTCSSHHHHHHHHHHTCCSEECCCGGGTTCHH
T ss_pred CHHHHHHHHHHh-hhcCcceeecCcccccchHHHHHHHhhcCCCccCCccccChHhHHHHHHcCCCCeEeecceeCCCHH
Confidence 677777777642 34677777665555566666777765566776421122335677788999998887 4443 445
Q ss_pred HHHHHHHHHHc
Q 029986 125 ELRNIWQHVAQ 135 (184)
Q Consensus 125 ~l~~~l~~~~~ 135 (184)
+..++...+..
T Consensus 300 ~~~kia~~A~~ 310 (388)
T 4h83_A 300 AWLRTAAIATS 310 (388)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544433
No 435
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=24.85 E-value=87 Score=23.62 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=38.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCH--HHHHHHHHHH
Q 029986 62 NGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI--KELRNIWQHV 133 (184)
Q Consensus 62 ~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~--~~l~~~l~~~ 133 (184)
..+|+||+|+-- . +|...+.+.+... .-+.+...++-|...|++|=+.. +++.+.+..+
T Consensus 138 ~~~DvVLSDMAP-n-SG~~~vD~~Rs~~-----------aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~l 198 (269)
T 2px2_A 138 EISDTLLCDIGE-S-SPSAEIEEQRTLR-----------ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESL 198 (269)
T ss_dssp CCCSEEEECCCC-C-CSCHHHHHHHHHH-----------HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHH
T ss_pred CCCCEEEeCCCC-C-CCccHHHHHHHHH-----------HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHH
Confidence 458999999864 3 6655666554321 24566677887876799998875 5665544443
No 436
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=24.83 E-value=1.3e+02 Score=22.75 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=34.9
Q ss_pred cCCCCEEEEEccCC--hHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHcC
Q 029986 88 EMDLPVIMMSVDGC--TQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQQ 136 (184)
Q Consensus 88 ~~~~~iIi~~~~~~--~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~~ 136 (184)
.+.+-++++++... .+.+..++++|.+=|+-||+ +.++..+.+..+.+.
T Consensus 71 ~~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 123 (318)
T 3oa2_A 71 ATALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERET 123 (318)
T ss_dssp TTSCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHh
Confidence 45566666654433 46788999999999999996 667777777666543
No 437
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=24.80 E-value=2.1e+02 Score=21.10 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=37.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-----CCe-EEEECCHHHHHHHHHhcCCCccEEEEeCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKC-----LYE-VTKCNRAEIALDMLRMSKNGYDIVISDVHMP 74 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~-----~~~-v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~ 74 (184)
+..+|..||-++...+..++.+... .-. -....++.+.+.. ....+|+|++|...+
T Consensus 101 ~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~---~~~~fD~Ii~d~~~~ 162 (283)
T 2i7c_A 101 SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN---VTNTYDVIIVDSSDP 162 (283)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH---CCSCEEEEEEECCCT
T ss_pred CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh---CCCCceEEEEcCCCC
Confidence 3568999999999988888877542 112 2345666654432 245699999998654
No 438
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=24.69 E-value=2.2e+02 Score=21.73 Aligned_cols=56 Identities=30% Similarity=0.294 Sum_probs=41.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCH-HHHH--HHHHhcCCCccEEEEeCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRA-EIAL--DMLRMSKNGYDIVISDVHMPD 75 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~-~~~~--~~l~~~~~~~dlvilD~~l~~ 75 (184)
.+.+++|+......-..+...|...|.+|..++.. .+.. +.++ . .|+||.-+.-|.
T Consensus 164 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l~~~~~--~--ADIVI~Avg~p~ 222 (300)
T 4a26_A 164 AGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLR--T--ADIVIAAMGQPG 222 (300)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHHHHHHH--T--CSEEEECSCCTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchhhhhhc--c--CCEEEECCCCCC
Confidence 57789999988888888899999889999888752 2222 3443 2 699998776553
No 439
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=24.47 E-value=1.1e+02 Score=21.96 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=37.4
Q ss_pred CCCccEEEEeCCC-CCCCHHHHHHHhccc--CCCCEEEEEccCChHHHHHHHHcCCC
Q 029986 61 KNGYDIVISDVHM-PDMDGFKLHEQVGLE--MDLPVIMMSVDGCTQDVMKGVTHGAC 114 (184)
Q Consensus 61 ~~~~dlvilD~~l-~~~~g~~l~~~l~~~--~~~~iIi~~~~~~~~~~~~a~~~ga~ 114 (184)
+.+.|.|-....+ +++-..+.++.++.. ..+||+....-.+.+.+.+.+.+||+
T Consensus 143 eaGad~I~tstg~~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~ 199 (225)
T 1mzh_A 143 EAGADFIKTSTGFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGAD 199 (225)
T ss_dssp HHTCSEEECCCSCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred HhCCCEEEECCCCCCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCch
Confidence 3457888555433 233345666666432 37899988887888999999999998
No 440
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=24.43 E-value=2e+02 Score=23.29 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=38.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCe-EE-EECCHHHHHHHHHhcCCCccEEEEeCC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLYE-VT-KCNRAEIALDMLRMSKNGYDIVISDVH 72 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~~-v~-~~~~~~~~~~~l~~~~~~~dlvilD~~ 72 (184)
.-+|+-+|-++...+.+..-++..|.. +. ...+........ ...+|+|++|.-
T Consensus 130 ~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~---~~~FD~Il~DaP 184 (456)
T 3m4x_A 130 KGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHF---SGFFDRIVVDAP 184 (456)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHH---TTCEEEEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhc---cccCCEEEECCC
Confidence 347999999999999999999887753 33 345665554333 356999999964
No 441
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=24.42 E-value=1.3e+02 Score=22.87 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=36.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc--C---CeE-EEECCHHHHHHHHHhcCCCccEEEEeCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKC--L---YEV-TKCNRAEIALDMLRMSKNGYDIVISDVHMP 74 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~--~---~~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~ 74 (184)
+..+|..||-++...+..++.+... + -.+ ....++.+.+.. ....+|+||+|...+
T Consensus 131 ~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~Ii~d~~~~ 192 (314)
T 2b2c_A 131 SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN---HKNEFDVIITDSSDP 192 (314)
T ss_dssp TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH---CTTCEEEEEECCC--
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh---cCCCceEEEEcCCCC
Confidence 3568999999999888888877542 1 123 245566554433 245699999998543
No 442
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=24.37 E-value=2e+02 Score=20.70 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=53.1
Q ss_pred HHHHHHHhcCC-eEEEECCHHHHHHHHHh-cCCCccEEEEeCCCCCCCHHHHHHHhccc-CCCCEEEEEccCChHHHHHH
Q 029986 32 ILEKMLRKCLY-EVTKCNRAEIALDMLRM-SKNGYDIVISDVHMPDMDGFKLHEQVGLE-MDLPVIMMSVDGCTQDVMKG 108 (184)
Q Consensus 32 ~l~~~L~~~~~-~v~~~~~~~~~~~~l~~-~~~~~dlvilD~~l~~~~g~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a 108 (184)
.+...|...+. -|....+.+++++.+.. .+.+.+++=+. +...++.+.++.++.. ++. ++-...--..+.+..+
T Consensus 18 ~~~~~l~~~~ii~V~r~~~~~~~~~~~~al~~gGv~~iel~--~k~~~~~~~i~~l~~~~~~~-~igagtvl~~d~~~~A 94 (225)
T 1mxs_A 18 RIDAICEKARILPVITIAREEDILPLADALAAGGIRTLEVT--LRSQHGLKAIQVLREQRPEL-CVGAGTVLDRSMFAAV 94 (225)
T ss_dssp HHHHHHHHHSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEE--SSSTHHHHHHHHHHHHCTTS-EEEEECCCSHHHHHHH
T ss_pred HHHHHHHHCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEe--cCCccHHHHHHHHHHhCccc-EEeeCeEeeHHHHHHH
Confidence 34445555553 33334455545444431 13557766555 4456778888877433 333 2222223345788889
Q ss_pred HHcCCCceEeCCCCHHHHHHHHHH
Q 029986 109 VTHGACNYLLKPIRIKELRNIWQH 132 (184)
Q Consensus 109 ~~~ga~~~l~kP~~~~~l~~~l~~ 132 (184)
+.+||+... -|-...++....+.
T Consensus 95 ~~aGAd~v~-~p~~d~~v~~~~~~ 117 (225)
T 1mxs_A 95 EAAGAQFVV-TPGITEDILEAGVD 117 (225)
T ss_dssp HHHTCSSEE-CSSCCHHHHHHHHH
T ss_pred HHCCCCEEE-eCCCCHHHHHHHHH
Confidence 999998554 56555555554443
No 443
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=24.35 E-value=1e+02 Score=24.22 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=40.4
Q ss_pred HHHHHHhcccC--CCCEEEEEccCChHHHHHHHHcCCCceEe-------CCCCHHHHHHHHHHHHc
Q 029986 79 FKLHEQVGLEM--DLPVIMMSVDGCTQDVMKGVTHGACNYLL-------KPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 79 ~~l~~~l~~~~--~~~iIi~~~~~~~~~~~~a~~~ga~~~l~-------kP~~~~~l~~~l~~~~~ 135 (184)
+++++.+++.. .+|||....-.+.+.+.+++.+||+.... -|.-..++.+.+...+.
T Consensus 285 ~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~~gP~~~~~i~~~l~~~m~ 350 (367)
T 3zwt_A 285 TQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLK 350 (367)
T ss_dssp HHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHhcCcHHHHHHHHHHHHHHH
Confidence 46777775543 79999998888899999999999986642 25445555555555444
No 444
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=24.34 E-value=1.2e+02 Score=18.23 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=49.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC-CeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCL-YEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~-~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi 95 (184)
+++|+|+.- -..-..+...|...| +.+..+....+..+.+. ......+..|+. +.-++.+.+. ..-+++
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~--~~~~~~~~~d~~----~~~~~~~~~~---~~d~vi 74 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN--RMGVATKQVDAK----DEAGLAKALG---GFDAVI 74 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH--TTTCEEEECCTT----CHHHHHHHTT---TCSEEE
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH--hCCCcEEEecCC----CHHHHHHHHc---CCCEEE
Confidence 468999988 556666677777777 77776554444444444 334556666553 2222333332 344555
Q ss_pred EEccCC--hHHHHHHHHcCCCce
Q 029986 96 MSVDGC--TQDVMKGVTHGACNY 116 (184)
Q Consensus 96 ~~~~~~--~~~~~~a~~~ga~~~ 116 (184)
.+.... ......+.+.|..-+
T Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 75 SAAPFFLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEE
T ss_pred ECCCchhhHHHHHHHHHhCCCEE
Confidence 443222 234455677777644
No 445
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=24.33 E-value=1.8e+02 Score=20.19 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=25.7
Q ss_pred CCCeEEEEeCCH--HHHHHHHHHHHhcCCeEEEE
Q 029986 16 AGLRVLVVDDDP--IWLRILEKMLRKCLYEVTKC 47 (184)
Q Consensus 16 ~~~~Ilivdd~~--~~~~~l~~~L~~~~~~v~~~ 47 (184)
..|||.|.-|+. .+.+.|..+|++.|++|.-+
T Consensus 19 ~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~ 52 (169)
T 3ph3_A 19 SHMKIGIGSDHGGYNLKREIADFLKKRGYEVIDF 52 (169)
T ss_dssp --CEEEEEECGGGHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCEEEEEeCchHHHHHHHHHHHHHHCCCEEEEc
Confidence 368999999987 57788999999999998755
No 446
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=24.27 E-value=2e+02 Score=20.54 Aligned_cols=69 Identities=13% Similarity=0.024 Sum_probs=42.1
Q ss_pred CHHHHHHHHHhcCCCccEEEEeC---C-CCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCC
Q 029986 49 RAEIALDMLRMSKNGYDIVISDV---H-MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~---~-l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP 120 (184)
+..+..+.+. +.+.|.+-++. . -+...- ++++.+++..++|+++-..-.+++.+..+++.||+....-.
T Consensus 33 d~~~~a~~~~--~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~ 105 (244)
T 1vzw_A 33 SPLEAALAWQ--RSGAEWLHLVDLDAAFGTGDNR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGT 105 (244)
T ss_dssp CHHHHHHHHH--HTTCSEEEEEEHHHHHTSCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred CHHHHHHHHH--HcCCCEEEEecCchhhcCCChH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEECc
Confidence 4444444443 23456554432 1 122333 77888866667888876555567788889999998776543
No 447
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=24.17 E-value=2.3e+02 Score=21.24 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=41.5
Q ss_pred CeEEEEe-CCHH---HHHHHHHHHHhcCCeEE---EE----CCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhc
Q 029986 18 LRVLVVD-DDPI---WLRILEKMLRKCLYEVT---KC----NRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG 86 (184)
Q Consensus 18 ~~Ilivd-d~~~---~~~~l~~~L~~~~~~v~---~~----~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~ 86 (184)
-+|.++. ++.. ..+.+...++..|..+. .+ .+....+..+. ...||+||+... ......+++.++
T Consensus 160 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~--~~~~dav~~~~~--~~~a~~~~~~~~ 235 (386)
T 3sg0_A 160 KKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKII--ATKPDAVFIASA--GTPAVLPQKALR 235 (386)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHH--HTCCSEEEEECC--SGGGHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHH--hcCCCEEEEecC--cchHHHHHHHHH
Confidence 3666664 4433 34445666666676543 22 24455566555 345899998543 344567777775
Q ss_pred cc-CCCCEEEE
Q 029986 87 LE-MDLPVIMM 96 (184)
Q Consensus 87 ~~-~~~~iIi~ 96 (184)
.. ...|++..
T Consensus 236 ~~g~~~~~~~~ 246 (386)
T 3sg0_A 236 ERGFKGAIYQT 246 (386)
T ss_dssp HTTCCSEEECC
T ss_pred HcCCCCcEEec
Confidence 43 34455433
No 448
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=24.15 E-value=1.5e+02 Score=22.77 Aligned_cols=56 Identities=23% Similarity=0.273 Sum_probs=41.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHH-HHHHhcCCCccEEEEeCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIAL-DMLRMSKNGYDIVISDVHMPD 75 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~-~~l~~~~~~~dlvilD~~l~~ 75 (184)
.+.+++|+......-..+..+|...|.+|..+++....+ +.++ ..|+||.-..-|+
T Consensus 164 ~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~----~ADIVI~Avg~p~ 220 (301)
T 1a4i_A 164 AGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVN----KGDILVVATGQPE 220 (301)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHT----TCSEEEECCCCTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHHHhc----cCCEEEECCCCcc
Confidence 467899999998888888889988899988886443333 3332 3799999876665
No 449
>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}
Probab=24.12 E-value=2e+02 Score=22.61 Aligned_cols=84 Identities=12% Similarity=0.056 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE-eCCCCHH---
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL-LKPIRIK--- 124 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l-~kP~~~~--- 124 (184)
+.++++++++.- ..+++.+++--++.. .++..++++....+||+.--.-.+.....++++.|+.|++ +|+...-
T Consensus 227 ~~~~a~~~~~~l-~~~~i~~iE~P~~~~-~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 304 (407)
T 2o56_A 227 DTTSAIQFGRMI-EELGIFYYEEPVMPL-NPAQMKQVADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGGIT 304 (407)
T ss_dssp CHHHHHHHHHHH-GGGCCSCEECSSCSS-SHHHHHHHHHHCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEeCCCChh-hHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 566666666532 124555665444432 3455566654446776643233345677888888876655 7777543
Q ss_pred HHHHHHHHHH
Q 029986 125 ELRNIWQHVA 134 (184)
Q Consensus 125 ~l~~~l~~~~ 134 (184)
+..++...+.
T Consensus 305 e~~~i~~~A~ 314 (407)
T 2o56_A 305 EVKKICDMAH 314 (407)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 450
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=24.12 E-value=95 Score=23.41 Aligned_cols=57 Identities=12% Similarity=-0.050 Sum_probs=41.5
Q ss_pred HHHHHHhccc-CCCCEEEEEccCChHHHHHHHHcCCCceE------e-CCCCHHHHHHHHHHHHc
Q 029986 79 FKLHEQVGLE-MDLPVIMMSVDGCTQDVMKGVTHGACNYL------L-KPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 79 ~~l~~~l~~~-~~~~iIi~~~~~~~~~~~~a~~~ga~~~l------~-kP~~~~~l~~~l~~~~~ 135 (184)
++.++.++.. +++|||....-.+.+.+.+++.+||+... . .|.-..++.+-+...+.
T Consensus 232 ~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~~l~~~~~ 296 (314)
T 2e6f_A 232 LANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMA 296 (314)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHHHHHHHHHH
Confidence 5677777654 48999988877788999999999998663 2 56656666666665554
No 451
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=24.07 E-value=46 Score=25.06 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHhcccCCCCEE--EEEccCChHHHHHHHHcCCCceEe
Q 029986 79 FKLHEQVGLEMDLPVI--MMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 79 ~~l~~~l~~~~~~~iI--i~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
++.+++++...+.|++ +...-.+.+.+..++++||+.++.
T Consensus 196 ~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvv 237 (297)
T 2zbt_A 196 FELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFV 237 (297)
T ss_dssp HHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEE
No 452
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=24.03 E-value=2.4e+02 Score=21.43 Aligned_cols=110 Identities=9% Similarity=0.090 Sum_probs=59.3
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhc-CCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCC
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKC-LYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLP 92 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~ 92 (184)
|.+.+||.|+.--..-.......+... ++++..+.+..... .. ...+.+-.. .+--+++. .+.+-
T Consensus 4 M~~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~--~~--~~~~~~~~~------~~~~~ll~----~~~vD 69 (352)
T 3kux_A 4 MADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASK--VH--ADWPAIPVV------SDPQMLFN----DPSID 69 (352)
T ss_dssp TTCCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHH--HH--TTCSSCCEE------SCHHHHHH----CSSCC
T ss_pred ccCCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHH--HH--hhCCCCceE------CCHHHHhc----CCCCC
Confidence 334578999988776554344445443 66665333222111 11 111111111 12222222 34455
Q ss_pred EEEEEccCC--hHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHcCC
Q 029986 93 VIMMSVDGC--TQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQQP 137 (184)
Q Consensus 93 iIi~~~~~~--~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~~~ 137 (184)
+++++.... .+.+..++++|.+=|+-||+ +.++..+.+..+.+..
T Consensus 70 ~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g 118 (352)
T 3kux_A 70 LIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAG 118 (352)
T ss_dssp EEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTT
T ss_pred EEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcC
Confidence 555554333 46778899999998999995 6677777777665543
No 453
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=23.96 E-value=2.6e+02 Score=21.74 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=38.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCC--eE-EEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLY--EV-TKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~--~v-~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
.+|.-+|-++...+..+.-+...+. .+ ....+..+.+..+......+|+|++|.
T Consensus 241 ~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dp 297 (396)
T 2as0_A 241 DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 297 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECC
Confidence 3799999999999888888876664 23 356677666554432235699999985
No 454
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=23.85 E-value=1.4e+02 Score=22.58 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=41.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~ 75 (184)
.+.+++|+......-..+..+|...|.+|..+++....+...- ...|+||.-..-|.
T Consensus 159 ~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~~---~~ADIVI~Avg~p~ 215 (285)
T 3p2o_A 159 EGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYT---RQADLIIVAAGCVN 215 (285)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHH---TTCSEEEECSSCTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHHh---hcCCEEEECCCCCC
Confidence 5678999998888888899999988999888865433333222 23799998775443
No 455
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=23.81 E-value=1.3e+02 Score=21.34 Aligned_cols=53 Identities=8% Similarity=0.036 Sum_probs=38.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcC----CeEEEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCL----YEVTKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~----~~v~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
.+.+|.+..+.. ....+...+...| ..+..+.+..+++..+. ....|+++.|.
T Consensus 136 ~g~~v~v~~g~~-~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~--~G~vDa~~~~~ 192 (259)
T 4dz1_A 136 NKYSIGYPRGMA-YSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLK--NGNLDLAFIEE 192 (259)
T ss_dssp GGSCEEEETTST-HHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHH--HTSCSEEEEEH
T ss_pred CCCEEEEeCCcH-HHHHHHHhcccccccccceeEecCCHHHHHHHHH--cCCCCEEEecH
Confidence 356788877655 4445666665545 46778889999999998 45689999985
No 456
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=23.79 E-value=1.9e+02 Score=21.19 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=39.5
Q ss_pred CCCCCeEEEEeCCHH-----HHHHHHHHHHhcCCeEEE--EC---CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHH
Q 029986 14 FPAGLRVLVVDDDPI-----WLRILEKMLRKCLYEVTK--CN---RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHE 83 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~-----~~~~l~~~L~~~~~~v~~--~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~ 83 (184)
.|..-+|.++.+... ..+.+++.++..|..+.. .. ++..+.+.+. ..||.||+-........+..+.
T Consensus 137 ~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~---~~~dai~~~~D~~a~g~~~~l~ 213 (302)
T 2qh8_A 137 LPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIA---EKSDVIYALIDNTVASAIEGMI 213 (302)
T ss_dssp STTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHG---GGCSEEEECSCHHHHTTHHHHH
T ss_pred CCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHHHh---ccCCEEEECCcHhHHHHHHHHH
Confidence 333457888765432 335566677777776542 22 3444444443 3589999943211111122233
Q ss_pred HhcccCCCCEEE
Q 029986 84 QVGLEMDLPVIM 95 (184)
Q Consensus 84 ~l~~~~~~~iIi 95 (184)
......++||+-
T Consensus 214 ~~~~~~~i~vig 225 (302)
T 2qh8_A 214 VAANQAKTPVFG 225 (302)
T ss_dssp HHHHHTTCCEEE
T ss_pred HHHHHcCCCEEE
Confidence 332235677754
No 457
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=23.77 E-value=2.3e+02 Score=21.23 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=33.1
Q ss_pred CCCCEEEEEccC--ChHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHcCC
Q 029986 89 MDLPVIMMSVDG--CTQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQQP 137 (184)
Q Consensus 89 ~~~~iIi~~~~~--~~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~~~ 137 (184)
+.+-+++++... ..+.+..++++|..=++-||+ +.++..+.+..+.+..
T Consensus 66 ~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~ 118 (329)
T 3evn_A 66 ESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCN 118 (329)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcC
Confidence 345556555433 345677899999998999997 5667777766665543
No 458
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=23.51 E-value=1.7e+02 Score=22.43 Aligned_cols=47 Identities=11% Similarity=0.119 Sum_probs=32.6
Q ss_pred CCCCEEEEEccCC--hHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHc
Q 029986 89 MDLPVIMMSVDGC--TQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQ 135 (184)
Q Consensus 89 ~~~~iIi~~~~~~--~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~ 135 (184)
+++-+++++.... .+.+..++++|..=|+-||+ +.++..+.+..+.+
T Consensus 64 ~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~ 114 (362)
T 3fhl_A 64 PEIDLIVVNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKK 114 (362)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4455555554333 46778899999998999998 66677776666554
No 459
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=23.41 E-value=1.8e+02 Score=19.73 Aligned_cols=49 Identities=22% Similarity=0.183 Sum_probs=36.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
.+.+|.+..+..... .|...+..+..+.+..++++++. ....|+++.+.
T Consensus 115 ~g~~v~~~~g~~~~~-----~l~~~~~~~~~~~~~~~~~~~l~--~g~vDa~~~~~ 163 (233)
T 1ii5_A 115 KNKEVAVVRDTTAVD-----WANFYQADVRETNNLTAAITLLQ--KKQVEAVMFDR 163 (233)
T ss_dssp TTCEEEEETTSHHHH-----HHHHTTCEEEEESSHHHHHHHHH--TTSCSEEEEEH
T ss_pred CCCeEEEECCccHHH-----HHHHcCCCeEEcCCHHHHHHHHH--cCCccEEEeCH
Confidence 467888887766432 34444788888999999999998 56689999974
No 460
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=23.39 E-value=2e+02 Score=20.30 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHH
Q 029986 72 HMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQ 131 (184)
Q Consensus 72 ~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~ 131 (184)
.+...++.+.++.++. ++.. +-...--..+.+..+++.||+. +.-|-...++.+..+
T Consensus 45 ~~k~~~~~~~i~~~~~-~~~~-~gag~vl~~d~~~~A~~~GAd~-v~~~~~d~~v~~~~~ 101 (207)
T 2yw3_A 45 TLRTEKGLEALKALRK-SGLL-LGAGTVRSPKEAEAALEAGAAF-LVSPGLLEEVAALAQ 101 (207)
T ss_dssp ECSSTHHHHHHHHHTT-SSCE-EEEESCCSHHHHHHHHHHTCSE-EEESSCCHHHHHHHH
T ss_pred eCCChHHHHHHHHHhC-CCCE-EEeCeEeeHHHHHHHHHcCCCE-EEcCCCCHHHHHHHH
Confidence 3344455566666654 3322 1122222345556666667663 333444344444333
No 461
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=23.37 E-value=2.2e+02 Score=20.81 Aligned_cols=112 Identities=13% Similarity=0.032 Sum_probs=54.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHh-cCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRK-CLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMM 96 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~ 96 (184)
|||+|+.-.-.+-..+.+.+.. .++++..+.+..+.++.+.. ..+| +++|..-|. ...+.+.... ....|+++-
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~--~~~D-vvIDfT~p~-a~~~~~~~a~-~~g~~~Vig 75 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTD--GNTE-VVIDFTHPD-VVMGNLEFLI-DNGIHAVVG 75 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHH--TTCC-EEEECSCTT-THHHHHHHHH-HTTCEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhc--cCCc-EEEEccChH-HHHHHHHHHH-HcCCCEEEc
Confidence 4778887644444445555554 47777644332221222221 2478 677887665 3455555542 245777765
Q ss_pred EccCChHH---HHHHHH-c-CCCceEeCCCCHH--HHHHHHHHHH
Q 029986 97 SVDGCTQD---VMKGVT-H-GACNYLLKPIRIK--ELRNIWQHVA 134 (184)
Q Consensus 97 ~~~~~~~~---~~~a~~-~-ga~~~l~kP~~~~--~l~~~l~~~~ 134 (184)
|..-+.+. +..+.+ . ++--++...++.. -+.+.+..+.
T Consensus 76 TTG~~~e~~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l~~~aa 120 (245)
T 1p9l_A 76 TTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAA 120 (245)
T ss_dssp CCCCCHHHHHHHHHHHHTSTTCEEEECSCCCHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHHHHHH
Confidence 44333332 223333 2 4433444444433 2444444443
No 462
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=23.24 E-value=1.3e+02 Score=18.65 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=27.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCe-EEEECC---HHHHHHHHHhcCCCccEEEEeCCC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYE-VTKCNR---AEIALDMLRMSKNGYDIVISDVHM 73 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~-v~~~~~---~~~~~~~l~~~~~~~dlvilD~~l 73 (184)
||+.++.| +..... +.-.|.. +..+.+ ..++++.+.. ...+.+|++.-.+
T Consensus 1 MkiaVIGD-~dtv~G----FrLaGi~~v~~v~~~ee~~~~~~~l~~-~~digIIlite~~ 54 (101)
T 2ov6_A 1 MELAVIGK-SEFVTG----FRLAGISKVYETPDIPATESAVRSVLE-DKSVGILVMHNDD 54 (101)
T ss_dssp CCEEEEEC-HHHHHH----HHHHTCCEEEECCSTTTHHHHHHHHHH-HTSSSEEEEEHHH
T ss_pred CEEEEEEC-HHHHHH----HHHcCCCceEecCCHHHHHHHHHHHhh-CCCeEEEEEcHHH
Confidence 57888888 433333 2223554 444544 4444444432 3458899997543
No 463
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=23.21 E-value=1.9e+02 Score=19.95 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=36.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
.+ +|.++.+... ...|...+..+..+.+..++++++. ....|+++.|.
T Consensus 106 ~g-~igv~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~L~--~GrvDa~i~~~ 153 (232)
T 3i6v_A 106 SG-IVAAQTATIQ-----AGYIAESGATLVEFATPEETIAAVR--NGEADAVFADR 153 (232)
T ss_dssp TS-EEEEETTSHH-----HHHHHHSSSEEEEESSHHHHHHHHH--TTSSSEEEEEH
T ss_pred CC-CEEEecCchH-----HHHHHhcCCeEEEeCCHHHHHHHHH--cCCcCEEEECh
Confidence 46 8888877653 2334434788999999999999998 56699999975
No 464
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=23.20 E-value=2.3e+02 Score=21.70 Aligned_cols=105 Identities=10% Similarity=0.138 Sum_probs=55.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-CCeEEEECCH-HHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC-LYEVTKCNRA-EIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~-~~~v~~~~~~-~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iI 94 (184)
.+||.|+.--..-.......+... ++++..+.+. .+... . .. +.+-..+ +- +.+-..+.+-++
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~-~~--~~~~~~~------~~----~~ll~~~~~D~V 71 (364)
T 3e82_A 7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK--R-DL--PDVTVIA------SP----EAAVQHPDVDLV 71 (364)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH--H-HC--TTSEEES------CH----HHHHTCTTCSEE
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--h-hC--CCCcEEC------CH----HHHhcCCCCCEE
Confidence 468888888765554344455543 5666533222 22111 1 11 1111211 21 222123445555
Q ss_pred EEEccC--ChHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHcC
Q 029986 95 MMSVDG--CTQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQQ 136 (184)
Q Consensus 95 i~~~~~--~~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~~ 136 (184)
+++... ..+.+..++++|..=|+-||+ +.++..+.+..+.+.
T Consensus 72 ~i~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~ 117 (364)
T 3e82_A 72 VIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEK 117 (364)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred EEeCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 554433 246677889999988889987 566776666666554
No 465
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Probab=23.03 E-value=2.1e+02 Score=22.64 Aligned_cols=85 Identities=11% Similarity=0.044 Sum_probs=48.0
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCC-CCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE-eCCCC---H
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVH-MPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL-LKPIR---I 123 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~-l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l-~kP~~---~ 123 (184)
+.++++++++.- ..+++.+++-- ++..+ ++..+.++....+||..--+-.+.....++++.|+.|++ +|+.. .
T Consensus 225 ~~~~A~~~~~~L-~~~~i~~iEqP~~~~~~-~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGi 302 (410)
T 3dip_A 225 GTHAAARICNAL-ADYGVLWVEDPIAKMDN-IPAVADLRRQTRAPICGGENLAGTRRFHEMLCADAIDFVMLDLTWCGGL 302 (410)
T ss_dssp CHHHHHHHHHHG-GGGTCSEEECCBSCTTC-HHHHHHHHHHHCCCEEECTTCCSHHHHHHHHHTTCCSEEEECTTTSSCH
T ss_pred CHHHHHHHHHHH-HhcCCCEEECCCCCccc-HHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCeEeecccccCCH
Confidence 466666665432 12456666654 34333 444555654445776654334446677888888876665 77764 4
Q ss_pred HHHHHHHHHHHc
Q 029986 124 KELRNIWQHVAQ 135 (184)
Q Consensus 124 ~~l~~~l~~~~~ 135 (184)
.+..++...+..
T Consensus 303 t~~~~ia~~A~~ 314 (410)
T 3dip_A 303 SEGRKIAALAET 314 (410)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 466
>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}
Probab=23.03 E-value=1.7e+02 Score=22.95 Aligned_cols=85 Identities=6% Similarity=0.099 Sum_probs=48.1
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE-eCCCC---HH
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL-LKPIR---IK 124 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l-~kP~~---~~ 124 (184)
+.++++++++.- ..+++.+++--++. +.++..++++....+||+.--.-.+.....++++.|+.|++ +|+.. ..
T Consensus 206 ~~~~a~~~~~~l-~~~~i~~iEqP~~~-~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 283 (391)
T 2qgy_A 206 DLDQTKSFLKEV-SSFNPYWIEEPVDG-ENISLLTEIKNTFNMKVVTGEKQSGLVHFRELISRNAADIFNPDISGMGGLI 283 (391)
T ss_dssp CHHHHHHHHHHH-GGGCCSEEECSSCT-TCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTSSCHH
T ss_pred CHHHHHHHHHHH-HhcCCCeEeCCCCh-hhHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcchhCCHH
Confidence 556666666431 12445455544443 23455566654456777654334456788888888876655 67764 55
Q ss_pred HHHHHHHHHHc
Q 029986 125 ELRNIWQHVAQ 135 (184)
Q Consensus 125 ~l~~~l~~~~~ 135 (184)
+..++...+..
T Consensus 284 ~~~~i~~~A~~ 294 (391)
T 2qgy_A 284 DIIEISNEASN 294 (391)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 467
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=23.02 E-value=1.4e+02 Score=22.50 Aligned_cols=85 Identities=12% Similarity=0.143 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCCccEEEEe-C--CCCC--CC--HHHHHHHhcccCCCCEEEEEccCCh------HHHHHHHHcCCCce
Q 029986 50 AEIALDMLRMSKNGYDIVISD-V--HMPD--MD--GFKLHEQVGLEMDLPVIMMSVDGCT------QDVMKGVTHGACNY 116 (184)
Q Consensus 50 ~~~~~~~l~~~~~~~dlvilD-~--~l~~--~~--g~~l~~~l~~~~~~~iIi~~~~~~~------~~~~~a~~~ga~~~ 116 (184)
...+.+.+... ..++++++. . .-|. .+ .+..+..+++..++||++.++.... .....+...||++.
T Consensus 161 i~~Ave~i~~~-Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~~lpVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl 239 (276)
T 1vs1_A 161 LLAAAEYILLE-GNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEATHLPVIVDPSHPAGRRSLVPALAKAGLAAGADGL 239 (276)
T ss_dssp HHHHHHHHHHT-TCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHBSSCEEECCHHHHCSGGGHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHc-CCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHhCCCEEEeCCCCCCccchHHHHHHHHHHcCCCEE
Confidence 34455555532 336899987 2 1222 11 2333455655457888776664433 45667888999976
Q ss_pred EeC--------------CCCHHHHHHHHHHHHc
Q 029986 117 LLK--------------PIRIKELRNIWQHVAQ 135 (184)
Q Consensus 117 l~k--------------P~~~~~l~~~l~~~~~ 135 (184)
+.- .+.+++|...+..+..
T Consensus 240 ~IE~H~~~d~a~~D~~~sl~p~~~~~lv~~i~~ 272 (276)
T 1vs1_A 240 IVEVHPNPEEALSDAKQQLTPGEFARLMGELRW 272 (276)
T ss_dssp EEEBCSSGGGCSSCGGGCBCHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCCchhcCCCHHHHHHHHHHHHH
Confidence 522 2356777777776543
No 468
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=23.01 E-value=2.3e+02 Score=21.76 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=13.7
Q ss_pred HHHHHHHHcCCCceEeCCC--CHHHHHHHHHH
Q 029986 103 QDVMKGVTHGACNYLLKPI--RIKELRNIWQH 132 (184)
Q Consensus 103 ~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~ 132 (184)
+.+..++++|.+=|+-||+ +.++..+.+..
T Consensus 98 ~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~ 129 (383)
T 3oqb_A 98 GLLTQAINAGKHVYCEKPIATNFEEALEVVKL 129 (383)
T ss_dssp HHHHHHHTTTCEEEECSCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHH
Confidence 4444555555554555554 33344444333
No 469
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=22.98 E-value=2.3e+02 Score=23.35 Aligned_cols=66 Identities=24% Similarity=0.413 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCccEEEEeCCCCC-----------------------------CCH--------------HHHHHHhc
Q 029986 50 AEIALDMLRMSKNGYDIVISDVHMPD-----------------------------MDG--------------FKLHEQVG 86 (184)
Q Consensus 50 ~~~~~~~l~~~~~~~dlvilD~~l~~-----------------------------~~g--------------~~l~~~l~ 86 (184)
..++++.+. ..+++.++++++.|. ..| ++.++.++
T Consensus 262 ~~~~~~rae--~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~i~~lr 339 (511)
T 1kbi_A 262 TDDLVKNVE--KLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELK 339 (511)
T ss_dssp HHHHHHHHH--HHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHHHH
T ss_pred HHHHHHHHH--HcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhccChHhHHHHHHHHH
Q ss_pred ccCCCCEEEEEccCChHHHHHHHHcCCCceEe
Q 029986 87 LEMDLPVIMMSVDGCTQDVMKGVTHGACNYLL 118 (184)
Q Consensus 87 ~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~ 118 (184)
...+.||++=.... .+.+..+.++|++...+
T Consensus 340 ~~~~~PvivKgv~~-~e~A~~a~~aGad~I~v 370 (511)
T 1kbi_A 340 KKTKLPIVIKGVQR-TEDVIKAAEIGVSGVVL 370 (511)
T ss_dssp HHCSSCEEEEEECS-HHHHHHHHHTTCSEEEE
T ss_pred HHhCCcEEEEeCCC-HHHHHHHHHcCCCEEEE
No 470
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=22.88 E-value=2.6e+02 Score=22.51 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=49.5
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccC---ChHHHHHHHHcCCCceE-eCCC---
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDG---CTQDVMKGVTHGACNYL-LKPI--- 121 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~---~~~~~~~a~~~ga~~~l-~kP~--- 121 (184)
+..++.+.+...-..++++++.--++..|. +-.++++....+|| +.... +.....++++.|+.+++ +|+.
T Consensus 271 t~~e~~~~~~~ll~~y~i~~IEdPl~~dD~-~g~~~L~~~~~ipI--~gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiG 347 (439)
T 2akz_A 271 TGDQLGALYQDFVRDYPVVSIEDPFDQDDW-AAWSKFTANVGIQI--VGDDLTVTNPKRIERAVEEKACNCLLLKVNQIG 347 (439)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTCH-HHHHHHHHTCSSEE--EESTTTTTCHHHHHHHHHTTCCSEEEECHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCcEEECCCCcccH-HHHHHHHhCCCCEE--EeCCCccCCHHHHHHHHHhCCCCEEEechhhcC
Confidence 446655554321123789999877776653 44455544444555 45553 56788889999976665 6665
Q ss_pred CHHHHHHHHHHHHc
Q 029986 122 RIKELRNIWQHVAQ 135 (184)
Q Consensus 122 ~~~~l~~~l~~~~~ 135 (184)
...+..++...+..
T Consensus 348 Gitea~~ia~lA~~ 361 (439)
T 2akz_A 348 SVTEAIQACKLAQE 361 (439)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 44455555555544
No 471
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=22.77 E-value=1.5e+02 Score=23.04 Aligned_cols=40 Identities=20% Similarity=0.081 Sum_probs=29.7
Q ss_pred HHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE
Q 029986 78 GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 78 g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
..++++.+++..++|||....-.+.+.+.++++.|..|++
T Consensus 283 ~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V 322 (363)
T 3l5l_A 283 MGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLV 322 (363)
T ss_dssp THHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEE
T ss_pred hHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEE
Confidence 3567777765557898877666678899999999955554
No 472
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=22.72 E-value=2.2e+02 Score=20.58 Aligned_cols=62 Identities=10% Similarity=0.110 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCeEEEECC-----HHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEE
Q 029986 30 LRILEKMLRKCLYEVTKCNR-----AEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 30 ~~~l~~~L~~~~~~v~~~~~-----~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~ 97 (184)
...+...+.+.||.+..+.. ....++.+. ...+|-+|+-...... +.++.+.. .++|+|++.
T Consensus 29 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~--~~~vdGiIi~~~~~~~---~~~~~l~~-~~iPvV~~~ 95 (294)
T 3qk7_A 29 ISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVE--TRRVDALIVAHTQPED---FRLQYLQK-QNFPFLALG 95 (294)
T ss_dssp HHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHH--HTCCSEEEECSCCSSC---HHHHHHHH-TTCCEEEES
T ss_pred HHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHH--cCCCCEEEEeCCCCCh---HHHHHHHh-CCCCEEEEC
Confidence 33444555566776654332 223444444 2346777664322222 33444422 345665553
No 473
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=22.72 E-value=1.1e+02 Score=23.86 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=40.3
Q ss_pred HHHHHHhcccC--CCCEEEEEccCChHHHHHHHHcCCCceE-------eCCCCHHHHHHHHHHHHc
Q 029986 79 FKLHEQVGLEM--DLPVIMMSVDGCTQDVMKGVTHGACNYL-------LKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 79 ~~l~~~l~~~~--~~~iIi~~~~~~~~~~~~a~~~ga~~~l-------~kP~~~~~l~~~l~~~~~ 135 (184)
+++++++++.. ++|||....-.+.+.+.+++.+||+..- --|.-..++.+-+...+.
T Consensus 262 ~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~gP~~~~~i~~~L~~~l~ 327 (345)
T 3oix_A 262 LANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFKRITKELXAIMT 327 (345)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhcChHHHHHHHHHHHHHHH
Confidence 56777776543 6899999888889999999999998753 234444555555555444
No 474
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}
Probab=22.65 E-value=2.3e+02 Score=22.28 Aligned_cols=85 Identities=5% Similarity=-0.099 Sum_probs=48.3
Q ss_pred CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceE-eCCCCH---H
Q 029986 49 RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYL-LKPIRI---K 124 (184)
Q Consensus 49 ~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l-~kP~~~---~ 124 (184)
+.++++++++.- ..+++.+++--++..+.++..+.++....+||..=-+-.+......+++.|+.|++ +|+... .
T Consensus 211 ~~~~A~~~~~~L-~~~~i~~iEeP~~~~d~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit 289 (392)
T 3ddm_A 211 DLPRARQMAQRL-GPAQLDWLEEPLRADRPAAEWAELAQAAPMPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFS 289 (392)
T ss_dssp CHHHHHHHHHHH-GGGCCSEEECCSCTTSCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHHTCEEEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHH-HHhCCCEEECCCCccchHHHHHHHHHhcCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHH
Confidence 566666665432 12456667655554342555666765556777643333445677788888876665 666653 4
Q ss_pred HHHHHHHHHH
Q 029986 125 ELRNIWQHVA 134 (184)
Q Consensus 125 ~l~~~l~~~~ 134 (184)
+..++...+.
T Consensus 290 ~~~~ia~~A~ 299 (392)
T 3ddm_A 290 GCLPVARAVV 299 (392)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 475
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=22.52 E-value=72 Score=24.83 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=45.7
Q ss_pred CeEEEEeCCHHH--HHHHHHHHHhcCCeEEE-------ECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhccc
Q 029986 18 LRVLVVDDDPIW--LRILEKMLRKCLYEVTK-------CNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLE 88 (184)
Q Consensus 18 ~~Ilivdd~~~~--~~~l~~~L~~~~~~v~~-------~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~ 88 (184)
-|++||.|.... .+.+...|+..++.+.. ..+..++.+.++ +..+|+||- +.+++-++..+.+...
T Consensus 35 ~r~liVtd~~~~~~~~~v~~~L~~~~~~v~~~v~~~p~~~~v~~~~~~~~--~~~~D~IIa---vGGGs~iD~aK~iA~~ 109 (353)
T 3hl0_A 35 SRALVLSTPQQKGDAEALASRLGRLAAGVFSEAAMHTPVEVTKTAVEAYR--AAGADCVVS---LGGGSTTGLGKAIALR 109 (353)
T ss_dssp CCEEEECCGGGHHHHHHHHHHHGGGEEEEECCCCTTCBHHHHHHHHHHHH--HTTCSEEEE---EESHHHHHHHHHHHHH
T ss_pred CEEEEEecCchhhHHHHHHHHHhhCCcEEecCcCCCCcHHHHHHHHHHHh--ccCCCEEEE---eCCcHHHHHHHHHHhc
Confidence 378888887542 33455555554443321 112455555555 345897754 4567777888877555
Q ss_pred CCCCEEEEEccC
Q 029986 89 MDLPVIMMSVDG 100 (184)
Q Consensus 89 ~~~~iIi~~~~~ 100 (184)
..+|+|.+.+..
T Consensus 110 ~~~p~i~IPTTa 121 (353)
T 3hl0_A 110 TDAAQIVIPTTY 121 (353)
T ss_dssp HCCEEEEEECSS
T ss_pred cCCCEEEEeCCc
Confidence 578887775544
No 476
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=22.48 E-value=1.7e+02 Score=22.24 Aligned_cols=56 Identities=25% Similarity=0.333 Sum_probs=40.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEECCHHHHH-HHHHhcCCCccEEEEeCCCCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCNRAEIAL-DMLRMSKNGYDIVISDVHMPD 75 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~-~~l~~~~~~~dlvilD~~l~~ 75 (184)
.+.+++|+......-..+..+|...|.+|..+++....+ +.+ ...|+||.-..-|.
T Consensus 160 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~----~~ADIVI~Avg~p~ 216 (285)
T 3l07_A 160 EGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHT----TKADILIVAVGKPN 216 (285)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH----TTCSEEEECCCCTT
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhc----ccCCEEEECCCCCC
Confidence 567899999888888888999998899988886432222 333 23799998775443
No 477
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=22.32 E-value=1.1e+02 Score=20.93 Aligned_cols=29 Identities=10% Similarity=-0.027 Sum_probs=15.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEE
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYEVTK 46 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~v~~ 46 (184)
|||+|....-.+-..+...|.+.|+.|..
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~ 29 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTA 29 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEE
Confidence 35666665555555555555555665543
No 478
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=22.24 E-value=2.6e+02 Score=22.12 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=52.3
Q ss_pred HHHHHHHhcCCeEEEE----CCHH---HHHHHHHhcCCCccEEEEeCC---CCC--CC--HHHHHHHhcccCCCCEEEEE
Q 029986 32 ILEKMLRKCLYEVTKC----NRAE---IALDMLRMSKNGYDIVISDVH---MPD--MD--GFKLHEQVGLEMDLPVIMMS 97 (184)
Q Consensus 32 ~l~~~L~~~~~~v~~~----~~~~---~~~~~l~~~~~~~dlvilD~~---l~~--~~--g~~l~~~l~~~~~~~iIi~~ 97 (184)
.|...+.+.|..|..- .+.+ .+.+.+.. ....+++++... -|. .+ .+..+..++...++|| ++
T Consensus 240 ~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~-~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~~lpV--~~ 316 (385)
T 3nvt_A 240 ELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMS-QGNGKIILCERGIRTYEKATRNTLDISAVPILKKETHLPV--MV 316 (385)
T ss_dssp HHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHT-TTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCE--EE
T ss_pred HHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHH-cCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhcCCCE--EE
Confidence 3444455555544432 2333 44455543 233689999861 111 11 1222334444457887 33
Q ss_pred ccCCh--------HHHHHHHHcCCCceEe-C-------------CCCHHHHHHHHHHHHc
Q 029986 98 VDGCT--------QDVMKGVTHGACNYLL-K-------------PIRIKELRNIWQHVAQ 135 (184)
Q Consensus 98 ~~~~~--------~~~~~a~~~ga~~~l~-k-------------P~~~~~l~~~l~~~~~ 135 (184)
+.... .....|...||++.+. | -+.+++|...++.+..
T Consensus 317 D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~H~~pd~a~~D~~~sl~p~el~~lv~~i~~ 376 (385)
T 3nvt_A 317 DVTHSTGRKDLLLPCAKAALAIEADGVMAEVHPDPAVALSDSAQQMDIPEFEEFWNAILA 376 (385)
T ss_dssp EHHHHHCCGGGHHHHHHHHHHTTCSEEEEEBCSCGGGCSSCTTTSBCHHHHHHHHHHHHH
T ss_pred cCCCCCCccchHHHHHHHHHHhCCCEEEEEecCChhhcCCcccccCCHHHHHHHHHHHHH
Confidence 32211 2456789999997663 1 1356677777766643
No 479
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=22.22 E-value=1.8e+02 Score=19.22 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=35.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCe--EE-EECCHHHHHHHHHhcCCCccEEEEeCC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRKCLYE--VT-KCNRAEIALDMLRMSKNGYDIVISDVH 72 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~~~~~--v~-~~~~~~~~~~~l~~~~~~~dlvilD~~ 72 (184)
.+|..+|-++...+..+..+...+.. +. ...+..+.+.. ....+|+|++|.-
T Consensus 55 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~fD~i~~~~~ 109 (177)
T 2esr_A 55 SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC---LTGRFDLVFLDPP 109 (177)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH---BCSCEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh---hcCCCCEEEECCC
Confidence 47999999999998888888776542 33 34455543332 2345999999853
No 480
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}
Probab=22.20 E-value=2.3e+02 Score=22.98 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=64.4
Q ss_pred eCCHHHHHHHHHHHHhcCCe--EE------------------E--------------ECCHHHHHHHHHhcCCCccEEEE
Q 029986 24 DDDPIWLRILEKMLRKCLYE--VT------------------K--------------CNRAEIALDMLRMSKNGYDIVIS 69 (184)
Q Consensus 24 dd~~~~~~~l~~~L~~~~~~--v~------------------~--------------~~~~~~~~~~l~~~~~~~dlvil 69 (184)
+++....+.|.+.++..||+ +. . .-+.++..+++..--..++++.+
T Consensus 221 ~~~~eaL~ll~~Ai~~aGy~~~i~i~lD~Aasefy~~~~g~Y~l~f~~~~~~~~~~~~~t~~elid~y~~lle~ypI~~I 300 (441)
T 3qtp_A 221 SGAREALDLLVEAIAKAGYTGKIEIAMDCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPIASI 300 (441)
T ss_dssp SSHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTTTEEETTTTSCGGGCCGGGEECHHHHHHHHHHHHHHSCEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEccchhHHHhhhccCCeEEeecCCcccccccccccCHHHHHHHHHHHhhhcceeee
Confidence 56777888888888766542 00 0 12456666665431123679999
Q ss_pred eCCCCCCCHHHHHHHhcccCCCCEEEEEccC---ChHHHHHHHHcCCCce-EeCCCC---HHHHHHHHHHHHc
Q 029986 70 DVHMPDMDGFKLHEQVGLEMDLPVIMMSVDG---CTQDVMKGVTHGACNY-LLKPIR---IKELRNIWQHVAQ 135 (184)
Q Consensus 70 D~~l~~~~g~~l~~~l~~~~~~~iIi~~~~~---~~~~~~~a~~~ga~~~-l~kP~~---~~~l~~~l~~~~~ 135 (184)
.--++..|. +-.++++.... ++-++.... +.....++++.++.++ ++|+.. ..+..++...+..
T Consensus 301 EDPl~~dD~-eg~a~Lt~~lg-~i~IvGDEl~vTn~~~i~~~Ie~~a~n~IlIKvnqiGGITEalkaa~lA~~ 371 (441)
T 3qtp_A 301 EDPFAEDDW-AAWNKFTVEHG-NFQIVGDDLLVTNPARVQMAMDKNACNSVLIKVNQIGTLTETFKTIKMAQE 371 (441)
T ss_dssp ESCSCTTCH-HHHHHHHHHTT-TSEEEESTTTTTCHHHHHHHHHHTCCSEEEECGGGTCCHHHHHHHHHHHHH
T ss_pred cCCCChHHH-HHHHHHHHhcC-CceEEeccccccCHHHHHHHHHcCCCCEEEecccccccHHHHHHHHHHHHH
Confidence 777776664 33344433333 454556543 4678888888888665 577764 4455555554443
No 481
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=22.13 E-value=2.6e+02 Score=21.10 Aligned_cols=91 Identities=12% Similarity=0.062 Sum_probs=55.2
Q ss_pred EEEEeCCHHHHHHHHHHHH----hcCC---eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCC
Q 029986 20 VLVVDDDPIWLRILEKMLR----KCLY---EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLP 92 (184)
Q Consensus 20 Ilivdd~~~~~~~l~~~L~----~~~~---~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~ 92 (184)
++|.|++-.....+...++ ..+. -...+.+.+++.+.+. .++|+|.+|-..|.. --+..+.++ .++|
T Consensus 169 ~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~---aGaD~I~ld~~~~~~-~k~av~~v~--~~ip 242 (286)
T 1x1o_A 169 ILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALE---AGADLILLDNFPLEA-LREAVRRVG--GRVP 242 (286)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHH---HTCSEEEEESCCHHH-HHHHHHHHT--TSSC
T ss_pred eEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH---cCCCEEEECCCCHHH-HHHHHHHhC--CCCe
Confidence 7788877765433333332 2232 2346788888888775 348999999743321 111222222 3567
Q ss_pred EEEEEccCChHHHHHHHHcCCCceE
Q 029986 93 VIMMSVDGCTQDVMKGVTHGACNYL 117 (184)
Q Consensus 93 iIi~~~~~~~~~~~~a~~~ga~~~l 117 (184)
+... ..-+.+.+....+.|++.+-
T Consensus 243 i~As-GGIt~eni~~~a~tGvD~Is 266 (286)
T 1x1o_A 243 LEAS-GNMTLERAKAAAEAGVDYVS 266 (286)
T ss_dssp EEEE-SSCCHHHHHHHHHHTCSEEE
T ss_pred EEEE-cCCCHHHHHHHHHcCCCEEE
Confidence 6654 55678888899999998654
No 482
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=22.09 E-value=2.2e+02 Score=20.72 Aligned_cols=71 Identities=8% Similarity=0.112 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCC-eEEEEC---CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEEEEcc
Q 029986 29 WLRILEKMLRKCLY-EVTKCN---RAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIMMSVD 99 (184)
Q Consensus 29 ~~~~l~~~L~~~~~-~v~~~~---~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi~~~~ 99 (184)
..+.|...++..+- .+..++ +..-.+.++........++++|..+......++++.+....++++.++...
T Consensus 33 ~~~~l~~a~~~~~~~v~va~SGG~DS~vLL~ll~~~~~~v~vv~idtg~~~~et~~~~~~~~~~~gi~~~v~~~~ 107 (252)
T 2o8v_A 33 AEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRAT 107 (252)
T ss_dssp HHHHHHHHHTTSCSCEEEECCCSTTHHHHHHHHHHHSTTCEEEECCCSCBCHHHHHHHHHHHHHTTCEEEECCCS
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 34566777776542 333444 334445555433334677888886654456778888866667888777543
No 483
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=21.83 E-value=1.4e+02 Score=23.82 Aligned_cols=53 Identities=8% Similarity=-0.038 Sum_probs=36.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc--CC-eE-EEECCHHHHHHHHHhcCCCccEEEEeC
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC--LY-EV-TKCNRAEIALDMLRMSKNGYDIVISDV 71 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~--~~-~v-~~~~~~~~~~~~l~~~~~~~dlvilD~ 71 (184)
+.+|.-||-++...+..+.-+... |. .+ ....+..+.+.... ...+|+|++|-
T Consensus 115 g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~--~~~fDvV~lDP 171 (410)
T 3ll7_A 115 ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIK--TFHPDYIYVDP 171 (410)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHH--HHCCSEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhcc--CCCceEEEECC
Confidence 358999999999999888888765 54 23 34556555444332 23599999985
No 484
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=21.79 E-value=2.9e+02 Score=21.57 Aligned_cols=72 Identities=17% Similarity=0.063 Sum_probs=50.4
Q ss_pred EEEECCHHHHHHHHHhcCCCccEEEEeCCCC-----CCCHHHHHHHhccc--CCCCEEEEEccCChHHHHHHHHcCCCce
Q 029986 44 VTKCNRAEIALDMLRMSKNGYDIVISDVHMP-----DMDGFKLHEQVGLE--MDLPVIMMSVDGCTQDVMKGVTHGACNY 116 (184)
Q Consensus 44 v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~-----~~~g~~l~~~l~~~--~~~~iIi~~~~~~~~~~~~a~~~ga~~~ 116 (184)
+..+.+.+++..... .++|.|++.-+-. ....++++..+... ..+|||.-..-.+...+.+++.+||+..
T Consensus 222 vK~v~~~e~A~~a~~---~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV 298 (352)
T 3sgz_A 222 LKGILTKEDAELAMK---HNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCI 298 (352)
T ss_dssp EEEECSHHHHHHHHH---TTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred EEecCcHHHHHHHHH---cCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEE
Confidence 445677787776654 5689998854211 12346677666322 3689988888888899999999999987
Q ss_pred Ee
Q 029986 117 LL 118 (184)
Q Consensus 117 l~ 118 (184)
..
T Consensus 299 ~i 300 (352)
T 3sgz_A 299 FL 300 (352)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 485
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=21.71 E-value=2.6e+02 Score=21.08 Aligned_cols=102 Identities=11% Similarity=0.090 Sum_probs=57.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh-cCCeEEEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRK-CLYEVTKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVIM 95 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iIi 95 (184)
.+||.|+.--..-.......|.. .++++..+.+.. ...+.+-.. .+--++++. .+.+-+++
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~---------~~~~g~~~~------~~~~~ll~~---~~~vD~V~ 86 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRH---------GTVEGVNSY------TTIEAMLDA---EPSIDAVS 86 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSS---------CCCTTSEEE------SSHHHHHHH---CTTCCEEE
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCC---------hhhcCCCcc------CCHHHHHhC---CCCCCEEE
Confidence 47999999887666333334443 366655443321 011222111 122223322 14455555
Q ss_pred EEccC--ChHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHcC
Q 029986 96 MSVDG--CTQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQQ 136 (184)
Q Consensus 96 ~~~~~--~~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~~ 136 (184)
++... ..+.+..++++|..=++-||+ +.++..+.+..+.+.
T Consensus 87 i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~ 131 (330)
T 4ew6_A 87 LCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQ 131 (330)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred EeCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 54432 246678899999999999997 666777776666543
No 486
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=21.70 E-value=2.4e+02 Score=20.64 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=37.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEE----ECCHHHHHHHHH---hcCCCccEEEEeCC
Q 029986 16 AGLRVLVVDDDPIWLRILEKMLRKCLYEVTK----CNRAEIALDMLR---MSKNGYDIVISDVH 72 (184)
Q Consensus 16 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~----~~~~~~~~~~l~---~~~~~~dlvilD~~ 72 (184)
.+.+|++++.+....+.+.+.++..|..+.. .++.++..+++. ..-...|+++-...
T Consensus 30 ~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 30 NDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 3568999999998888888888876644332 334444444432 22345899997664
No 487
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=21.67 E-value=2.8e+02 Score=21.40 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=36.3
Q ss_pred CCccEEEEeCCCCCCC-HHHHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCCCCH--HHHHHHHHHHH
Q 029986 62 NGYDIVISDVHMPDMD-GFKLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRI--KELRNIWQHVA 134 (184)
Q Consensus 62 ~~~dlvilD~~l~~~~-g~~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~--~~l~~~l~~~~ 134 (184)
..+|+|++|+.-...+ ..+-.+.++ --+.+..++..|...|.+|=+.. .++.+.++.+.
T Consensus 159 ~~~D~ivcDigeSs~~~~ve~~Rtl~--------------vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq 220 (321)
T 3lkz_A 159 ECCDTLLCDIGESSSSAEVEEHRTIR--------------VLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQ 220 (321)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHH--------------HHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECccCCCChhhhhhHHHH--------------HHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHH
Confidence 4589999999733333 234444443 13566778887877888886655 55555555544
No 488
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=21.61 E-value=2.6e+02 Score=21.05 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=18.4
Q ss_pred HHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHH
Q 029986 103 QDVMKGVTHGACNYLLKPI--RIKELRNIWQHVA 134 (184)
Q Consensus 103 ~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~ 134 (184)
+.+..++++|..=++-||+ +.++..+.+..+.
T Consensus 81 ~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~ 114 (344)
T 3mz0_A 81 SSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEI 114 (344)
T ss_dssp HHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHH
Confidence 4555667777666666775 3445555544443
No 489
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=21.60 E-value=1.4e+02 Score=22.86 Aligned_cols=103 Identities=15% Similarity=0.086 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCeEE--EECCHHHHHHHHHhcCCCccEEEEeCCCC----C-CCHHHHHHHh---cccCCCCEEEEEcc
Q 029986 30 LRILEKMLRKCLYEVT--KCNRAEIALDMLRMSKNGYDIVISDVHMP----D-MDGFKLHEQV---GLEMDLPVIMMSVD 99 (184)
Q Consensus 30 ~~~l~~~L~~~~~~v~--~~~~~~~~~~~l~~~~~~~dlvilD~~l~----~-~~g~~l~~~l---~~~~~~~iIi~~~~ 99 (184)
....-..|+..|+.+. -|.++-..+..+. .-++|.|=+|-.+- . .....+++.+ .+.-++.+|+= .=
T Consensus 214 ~~~~l~~Lr~~G~~ialDDFGtG~ssl~~L~--~lp~d~iKID~sfv~~~~~~~~~~~iv~~ii~la~~lg~~vvAE-GV 290 (340)
T 4hjf_A 214 AAVILKTLRDAGAGLALDDFGTGFSSLSYLT--RLPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVVAE-GV 290 (340)
T ss_dssp HHHHHHHHHHHTCEEEEECTTSSSCGGGTGG--GSCCSEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHHTCEEEEE-CC
T ss_pred HHHHHHHHHHcCCCccccCCCCCcchHHHHH--hCCCChhcccHHhhhcccCCHhHHHHHHHHHHHHHHcCCEEEEE-eC
Confidence 3334455666788765 3555555666665 45689998886332 1 1233445544 22235566544 33
Q ss_pred CChHHHHHHHHcCCCc----eEeCCCCHHHHHHHHHHHHc
Q 029986 100 GCTQDVMKGVTHGACN----YLLKPIRIKELRNIWQHVAQ 135 (184)
Q Consensus 100 ~~~~~~~~a~~~ga~~----~l~kP~~~~~l~~~l~~~~~ 135 (184)
.+.+....+.+.|++. |+.||.+.+++...++....
T Consensus 291 Et~~q~~~L~~lG~d~~QGy~~~~P~~~~~~~~~l~~~~~ 330 (340)
T 4hjf_A 291 ENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNEAYV 330 (340)
T ss_dssp CSHHHHHHHHHTTCCEEESTTTCCSBCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCEeecCccccCCCHHHHHHHHHhccC
Confidence 4566777788889863 36899999999988876543
No 490
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=21.42 E-value=2e+02 Score=19.66 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=43.3
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcCC--eE-EEECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhc
Q 029986 14 FPAGLRVLVVDDDPIWLRILEKMLRKCLY--EV-TKCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVG 86 (184)
Q Consensus 14 ~~~~~~Ilivdd~~~~~~~l~~~L~~~~~--~v-~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~ 86 (184)
.+++.+|..+|-++...+..+..+...+. .+ ....+..+.+.. ... +|+|++|.. ..+-..+++.+.
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~-fD~v~~~~~--~~~~~~~l~~~~ 147 (210)
T 3c3p_A 78 ISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG---QRD-IDILFMDCD--VFNGADVLERMN 147 (210)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT---CCS-EEEEEEETT--TSCHHHHHHHHG
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc---CCC-CCEEEEcCC--hhhhHHHHHHHH
Confidence 34356899999999999888888876554 23 344555543322 134 999999954 334455666663
No 491
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=21.37 E-value=1.8e+02 Score=28.64 Aligned_cols=85 Identities=7% Similarity=-0.070 Sum_probs=52.0
Q ss_pred HHHHHHhcCCeEE-EECCHHHHHHHH-HhcCCCccEEE---EeC-CCCCCC--------HHHHHHHhcccCCCCEEEEEc
Q 029986 33 LEKMLRKCLYEVT-KCNRAEIALDML-RMSKNGYDIVI---SDV-HMPDMD--------GFKLHEQVGLEMDLPVIMMSV 98 (184)
Q Consensus 33 l~~~L~~~~~~v~-~~~~~~~~~~~l-~~~~~~~dlvi---lD~-~l~~~~--------g~~l~~~l~~~~~~~iIi~~~ 98 (184)
+..+++..|..+. .+.+..++.... ...+.++|.++ +.- .-.+-. .++++.+++...++|+|+-..
T Consensus 684 ~~~~l~~~gi~~i~~v~~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ipviaaGG 763 (2060)
T 2uva_G 684 ANEYIQTLGIRHISFKPGSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSG 763 (2060)
T ss_dssp HHHHHHHSCCSEEEECCCSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESS
T ss_pred HHHHHHHcCCeEEEecCCHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHcCCCEEEeCC
Confidence 4455665555433 444555555541 11134588887 331 111111 245677776666788888878
Q ss_pred cCChHHHHHHH-----------HcCCCceE
Q 029986 99 DGCTQDVMKGV-----------THGACNYL 117 (184)
Q Consensus 99 ~~~~~~~~~a~-----------~~ga~~~l 117 (184)
-.+...+..++ .+||++..
T Consensus 764 I~~g~~i~aaltg~ws~~~g~palGAdgV~ 793 (2060)
T 2uva_G 764 FGGSEDTYPYLTGSWSTKFGYPPMPFDGCM 793 (2060)
T ss_dssp CCSHHHHHHHHHTCGGGTTTSCCCCCSCEE
T ss_pred CCCHHHHHHHhcCcchhhcCCCCCCCCEEE
Confidence 88889999999 99999875
No 492
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=21.28 E-value=2e+02 Score=20.11 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=42.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC--eEE-EECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHh
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKCLY--EVT-KCNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQV 85 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l 85 (184)
+.+|..+|-++...+..+..+...|. .+. ...+..+.+.... ....+|+|++|...+ +-.++++.+
T Consensus 78 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I~~~~~~~--~~~~~l~~~ 146 (233)
T 2gpy_A 78 EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE-LYPLFDVLFIDAAKG--QYRRFFDMY 146 (233)
T ss_dssp TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT-TSCCEEEEEEEGGGS--CHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc-cCCCccEEEECCCHH--HHHHHHHHH
Confidence 46899999999999988888887654 233 3344444333321 124699999987543 444556655
No 493
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=21.23 E-value=2.8e+02 Score=21.19 Aligned_cols=104 Identities=9% Similarity=0.060 Sum_probs=54.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-CCeEEE-ECCHHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHhcccCCCCEE
Q 029986 17 GLRVLVVDDDPIWLRILEKMLRKC-LYEVTK-CNRAEIALDMLRMSKNGYDIVISDVHMPDMDGFKLHEQVGLEMDLPVI 94 (184)
Q Consensus 17 ~~~Ilivdd~~~~~~~l~~~L~~~-~~~v~~-~~~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~l~~~l~~~~~~~iI 94 (184)
.+||.|+.--..-...+. .|... ++++.. +....+..+... . +.+-.. .+--+++. .+.+-++
T Consensus 5 ~~~vgiiG~G~~g~~~~~-~l~~~~~~~l~av~d~~~~~~~~a~--~--~g~~~~------~~~~~ll~----~~~~D~V 69 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVT-LASAADNLEVHGVFDILAEKREAAA--Q--KGLKIY------ESYEAVLA----DEKVDAV 69 (359)
T ss_dssp CEEEEEECCSHHHHHHHH-HHHTSTTEEEEEEECSSHHHHHHHH--T--TTCCBC------SCHHHHHH----CTTCCEE
T ss_pred cCcEEEECcCHHHHHHHH-HHHhCCCcEEEEEEcCCHHHHHHHH--h--cCCcee------CCHHHHhc----CCCCCEE
Confidence 467888887665554443 44443 566553 332222223222 2 222111 12222222 2345555
Q ss_pred EEEccCC--hHHHHHHHHcCCCceEeCCC--CHHHHHHHHHHHHc
Q 029986 95 MMSVDGC--TQDVMKGVTHGACNYLLKPI--RIKELRNIWQHVAQ 135 (184)
Q Consensus 95 i~~~~~~--~~~~~~a~~~ga~~~l~kP~--~~~~l~~~l~~~~~ 135 (184)
+++.... .+.+..++++|..=++-||+ +.++..+.+..+.+
T Consensus 70 ~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~ 114 (359)
T 3e18_A 70 LIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKR 114 (359)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHH
Confidence 5544332 45677888899888888997 45566666665544
No 494
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=21.23 E-value=2.6e+02 Score=20.80 Aligned_cols=53 Identities=8% Similarity=0.017 Sum_probs=37.0
Q ss_pred HHHHHhccc-CC-CCEEEEEccCChHHHHHHHHcCCCceEeCCCCHHHHHHHHHHHH
Q 029986 80 KLHEQVGLE-MD-LPVIMMSVDGCTQDVMKGVTHGACNYLLKPIRIKELRNIWQHVA 134 (184)
Q Consensus 80 ~l~~~l~~~-~~-~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP~~~~~l~~~l~~~~ 134 (184)
+.++..+.. ++ .++++-. .+.+.+..+.++|++...+.+++++.+....+.+.
T Consensus 170 ~ai~~~r~~~~~~~~i~vev--~tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l~ 224 (273)
T 2b7n_A 170 SFLTHARKNLPFTAKIEIEC--ESFEEAKNAMNAGADIVMCDNLSVLETKEIAAYRD 224 (273)
T ss_dssp HHHHHHGGGSCTTCCEEEEE--SSHHHHHHHHHHTCSEEEEETCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCceEEEEc--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 345555433 33 3555543 34577888999999988899999999988877653
No 495
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=21.22 E-value=1.3e+02 Score=22.16 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=62.8
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEC---------CHHHHHHHHHhcCCCccEEEEeCCCCCCCHHH-HHHH
Q 029986 15 PAGLRVLVVDDDPIWLRILEKMLRKCLYEVTKCN---------RAEIALDMLRMSKNGYDIVISDVHMPDMDGFK-LHEQ 84 (184)
Q Consensus 15 ~~~~~Ilivdd~~~~~~~l~~~L~~~~~~v~~~~---------~~~~~~~~l~~~~~~~dlvilD~~l~~~~g~~-l~~~ 84 (184)
.++.+|++.-.+. .+..|...|...|+.+..+. +.....+.+. ...+|.|++-. .++++ +.+.
T Consensus 139 ~~g~~vLi~rg~~-~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~--~~~~d~v~ftS----~s~v~~~~~~ 211 (269)
T 3re1_A 139 VPGSRVLIMRGNE-GRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVE--VERLNGLVVSS----GQGFEHLLQL 211 (269)
T ss_dssp SSSCEEEEEECSS-CCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHHH--HTTCCEEECSS----HHHHTTTHHH
T ss_pred CCCCEEEEEccCc-cHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHHH--cCCCCEEEEcC----HHHHHHHHHH
Confidence 3567899887654 45677888888887654321 2233344444 24588888632 22332 2222
Q ss_pred hcc----cCCCCEEEEEccCChHHHHHHHHcCCCc-eEeCCCCHHHHHHHHHHH
Q 029986 85 VGL----EMDLPVIMMSVDGCTQDVMKGVTHGACN-YLLKPIRIKELRNIWQHV 133 (184)
Q Consensus 85 l~~----~~~~~iIi~~~~~~~~~~~~a~~~ga~~-~l~kP~~~~~l~~~l~~~ 133 (184)
+.. ..+++++.++ +.....+.+.|... ++.+..+.+.|.+++...
T Consensus 212 ~~~~~~~l~~~~~~aIG----~~Ta~~l~~~G~~~~~va~~~t~~~l~~al~~~ 261 (269)
T 3re1_A 212 AGDSWPDLAGLPLFVPS----PRVASLAQAAGARNVIDCRGASAAALLAALRDQ 261 (269)
T ss_dssp HGGGHHHHTTSCEEESS----HHHHHHHHHHTCSSEEECSSSSHHHHHHHHHHS
T ss_pred hhHHHHHHhCCeEEEEC----HHHHHHHHHCCCCceEECCCCCHHHHHHHHHHH
Confidence 221 2356676653 44455556678754 457778888888777654
No 496
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=21.17 E-value=2.6e+02 Score=21.21 Aligned_cols=47 Identities=9% Similarity=0.204 Sum_probs=27.9
Q ss_pred CCCEEEEEccC--ChHHHHHHHHcCCCceEeCCCC--HHHHHHHHHHHHcC
Q 029986 90 DLPVIMMSVDG--CTQDVMKGVTHGACNYLLKPIR--IKELRNIWQHVAQQ 136 (184)
Q Consensus 90 ~~~iIi~~~~~--~~~~~~~a~~~ga~~~l~kP~~--~~~l~~~l~~~~~~ 136 (184)
.+-+++++... ..+.+..++++|..=++-||+. .++..+.+..+.+.
T Consensus 65 ~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 115 (349)
T 3i23_A 65 EIELITICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEK 115 (349)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHc
Confidence 34444443322 2355667788887777788864 66666666655443
No 497
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=21.12 E-value=2.4e+02 Score=20.64 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=34.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHh-------cCC---eEEEECCHHHHHHHHHhcCCCccEEEEeCCCCC
Q 029986 18 LRVLVVDDDPIWLRILEKMLRK-------CLY---EVTKCNRAEIALDMLRMSKNGYDIVISDVHMPD 75 (184)
Q Consensus 18 ~~Ilivdd~~~~~~~l~~~L~~-------~~~---~v~~~~~~~~~~~~l~~~~~~~dlvilD~~l~~ 75 (184)
.+|.-+|-++.....++..++. .+. ......+..+.+..+......+|+|++|-..+.
T Consensus 106 ~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 106 LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCCSEEEECCCC--
T ss_pred CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCccEEEECCCCCC
Confidence 4799999999665555444432 121 223456777766544310145999999976554
No 498
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=21.09 E-value=2.3e+02 Score=20.12 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=30.5
Q ss_pred HHHHHhcccCCCCEEEEEccCChHHHHHHHHcCCCceEeCC
Q 029986 80 KLHEQVGLEMDLPVIMMSVDGCTQDVMKGVTHGACNYLLKP 120 (184)
Q Consensus 80 ~l~~~l~~~~~~~iIi~~~~~~~~~~~~a~~~ga~~~l~kP 120 (184)
+.++.+++..++|+++-..-.+++.+..+++.||+....-.
T Consensus 64 ~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~ 104 (244)
T 2y88_A 64 ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGT 104 (244)
T ss_dssp HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECc
Confidence 77888866667888776555567788899999998776543
No 499
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=21.07 E-value=1.6e+02 Score=18.43 Aligned_cols=66 Identities=12% Similarity=0.260 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCeE----EEECCH-HHHHHHHHhcCCCccEEEEeCCCCCCCH--HHHHHHhcccCCCCEEEEEc
Q 029986 30 LRILEKMLRKCLYEV----TKCNRA-EIALDMLRMSKNGYDIVISDVHMPDMDG--FKLHEQVGLEMDLPVIMMSV 98 (184)
Q Consensus 30 ~~~l~~~L~~~~~~v----~~~~~~-~~~~~~l~~~~~~~dlvilD~~l~~~~g--~~l~~~l~~~~~~~iIi~~~ 98 (184)
.+.+..+.+..|..+ ....+. +...+... ...+|+|++... .+.-+ .....++-...++||+++-.
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~~~dliV~G~~-~~~~~~lgs~~~~vl~~~~~pVlvv~~ 138 (141)
T 1jmv_A 66 QKALLDLAESVDYPISEKLSGSGDLGQVLSDAIE--QYDVDLLVTGHH-QDFWSKLMSSTRQVMNTIKIDMLVVPL 138 (141)
T ss_dssp HHHHHHHHHHSSSCCCCEEEEEECHHHHHHHHHH--HTTCCEEEEEEC-CCCHHHHHHHHHHHHTTCCSEEEEEEC
T ss_pred HHHHHHHHHHcCCCceEEEEecCCHHHHHHHHHH--hcCCCEEEEeCC-CchhhhhcchHHHHHhcCCCCEEEeeC
Confidence 445556555555432 233444 33444444 456899999987 43221 13444443345789988853
No 500
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=21.00 E-value=3e+02 Score=21.50 Aligned_cols=85 Identities=22% Similarity=0.126 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCeE--EEECCHHHHHHHHHhcCCCccEEEEeCCCC-----CCCHHHHHHHhcccCCCCEEEEEccCChH
Q 029986 31 RILEKMLRKCLYEV--TKCNRAEIALDMLRMSKNGYDIVISDVHMP-----DMDGFKLHEQVGLEMDLPVIMMSVDGCTQ 103 (184)
Q Consensus 31 ~~l~~~L~~~~~~v--~~~~~~~~~~~~l~~~~~~~dlvilD~~l~-----~~~g~~l~~~l~~~~~~~iIi~~~~~~~~ 103 (184)
+.++.+-+..+..+ ..+.+.+++..... .+.|.|.+.-.-. +...++.+..++...+.|||.-..-.+..
T Consensus 215 ~~i~~i~~~~~~Pv~vkgv~t~e~a~~a~~---aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~~~pVia~GGI~~~~ 291 (380)
T 1p4c_A 215 EALRWLRDLWPHKLLVKGLLSAEDADRCIA---EGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLIDSGFRRGS 291 (380)
T ss_dssp HHHHHHHHHCCSEEEEEEECCHHHHHHHHH---TTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEECSSCCSHH
T ss_pred HHHHHHHHhcCCCEEEEecCcHHHHHHHHH---cCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHcCCeEEEECCCCCHH
Confidence 44444444444433 34677787777664 4589888832110 11124556666433345888777767788
Q ss_pred HHHHHHHcCCCceEe
Q 029986 104 DVMKGVTHGACNYLL 118 (184)
Q Consensus 104 ~~~~a~~~ga~~~l~ 118 (184)
.+.+++..||+....
T Consensus 292 dv~kal~~GAdaV~i 306 (380)
T 1p4c_A 292 DIVKALALGAEAVLL 306 (380)
T ss_dssp HHHHHHHTTCSCEEE
T ss_pred HHHHHHHhCCcHhhe
Confidence 999999999988754
Done!