Your job contains 1 sequence.
>029987
MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPLSNAR
PSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFS
EIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDTIMYCW
MENR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029987
(184 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2151779 - symbol:ALY4 "ALWAYS EARLY 4" species... 356 1.4e-32 1
TAIR|locus:2205293 - symbol:AT1G66260 species:3702 "Arabi... 328 1.3e-29 1
TAIR|locus:2181763 - symbol:AT5G02530 species:3702 "Arabi... 212 2.5e-17 1
MGI|MGI:1913144 - symbol:Alyref2 "Aly/REF export factor 2... 163 3.2e-16 2
UNIPROTKB|E1C2L5 - symbol:THOC4 "Uncharacterized protein"... 199 6.0e-16 1
ZFIN|ZDB-GENE-070928-29 - symbol:alyref "Aly/REF export f... 161 8.3e-16 2
MGI|MGI:1341044 - symbol:Alyref "Aly/REF export factor" s... 185 1.8e-14 1
UNIPROTKB|Q3T0I4 - symbol:ALYREF "THO complex subunit 4" ... 183 3.0e-14 1
UNIPROTKB|F1PL92 - symbol:ALYREF "Uncharacterized protein... 183 3.0e-14 1
UNIPROTKB|E9PB61 - symbol:ALYREF "THO complex subunit 4" ... 183 3.0e-14 1
UNIPROTKB|Q86V81 - symbol:ALYREF "THO complex subunit 4" ... 183 3.0e-14 1
RGD|1594679 - symbol:Thoc4 "THO complex 4" species:10116 ... 183 3.0e-14 1
FB|FBgn0010774 - symbol:Ref1 "RNA and export factor bindi... 167 1.7e-12 1
DICTYBASE|DDB_G0285361 - symbol:DDB_G0285361 "RNA-binding... 105 2.3e-05 2
ASPGD|ASPL0000065384 - symbol:AN7706 species:162425 "Emer... 107 3.8e-05 2
>TAIR|locus:2151779 [details] [associations]
symbol:ALY4 "ALWAYS EARLY 4" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715
Pfam:PF13865 KO:K12881 HOGENOM:HOG000239962 EMBL:BT010588
EMBL:AK227931 IPI:IPI00538146 RefSeq:NP_198588.2 UniGene:At.22374
ProteinModelPortal:Q6NQ72 SMR:Q6NQ72 STRING:Q6NQ72 PRIDE:Q6NQ72
EnsemblPlants:AT5G37720.1 GeneID:833750 KEGG:ath:AT5G37720
TAIR:At5g37720 InParanoid:Q6NQ72 OMA:EVERYAI PhylomeDB:Q6NQ72
ProtClustDB:CLSN2689042 Genevestigator:Q6NQ72 Uniprot:Q6NQ72
Length = 288
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 70/106 (66%), Positives = 84/106 (79%)
Query: 49 GAARRGPLS-NARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLH 107
G ARRGPL+ NARPSS+TI K RR R+ PWQ LFED LRAAG SG+EVGT+L+V+NL
Sbjct: 42 GPARRGPLAVNARPSSFTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLD 101
Query: 108 PGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLF 153
GVTN+DIRELFSEIGE++RYAIH+DKNGRPS ++ + S F
Sbjct: 102 QGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAF 147
>TAIR|locus:2205293 [details] [associations]
symbol:AT1G66260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K12881 HSSP:O08583
HOGENOM:HOG000239962 ProtClustDB:CLSN2689042 EMBL:AF410310
EMBL:AY149925 IPI:IPI00520633 RefSeq:NP_001185329.1
RefSeq:NP_564871.1 UniGene:At.25606 ProteinModelPortal:Q94EH8
SMR:Q94EH8 STRING:Q94EH8 PaxDb:Q94EH8 PRIDE:Q94EH8
EnsemblPlants:AT1G66260.1 EnsemblPlants:AT1G66260.2 GeneID:842943
KEGG:ath:AT1G66260 TAIR:At1g66260 eggNOG:NOG257473
InParanoid:Q94EH8 OMA:HAEAMNI PhylomeDB:Q94EH8
Genevestigator:Q94EH8 Uniprot:Q94EH8
Length = 295
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 72/151 (47%), Positives = 98/151 (64%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXMTGA-----ARRGP 55
M+ ++M+LD+I+K + KSE + G RRGP
Sbjct: 1 MSDALNMTLDEIVK-KSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRGP 59
Query: 56 LS-NARPSS-YTIAKSFRRTRNFPWQH--DLFEDSLRAAGISGIEVGTKLYVSNLHPGVT 111
L+ N RPSS ++I K RR R+ PWQ+ DL+E++LRA G+SG+EVGT +Y++NL GVT
Sbjct: 60 LAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGVT 119
Query: 112 NDDIRELFSEIGELKRYAIHFDKNGRPSVSS 142
N+DIREL++EIGELKRYAIH+DKNGRPS S+
Sbjct: 120 NEDIRELYAEIGELKRYAIHYDKNGRPSGSA 150
>TAIR|locus:2181763 [details] [associations]
symbol:AT5G02530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
KO:K12881 HSSP:O08583 eggNOG:NOG316507 HOGENOM:HOG000239962
OMA:IRNRPAI UniGene:At.27625 UniGene:At.72858 EMBL:AY140010
EMBL:BT006323 IPI:IPI00538790 RefSeq:NP_195873.2
ProteinModelPortal:Q8L719 SMR:Q8L719 IntAct:Q8L719 STRING:Q8L719
PaxDb:Q8L719 PRIDE:Q8L719 EnsemblPlants:AT5G02530.1 GeneID:831923
KEGG:ath:AT5G02530 TAIR:At5g02530 InParanoid:Q8L719
PhylomeDB:Q8L719 ProtClustDB:CLSN2918011 ArrayExpress:Q8L719
Genevestigator:Q8L719 Uniprot:Q8L719
Length = 292
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 58/160 (36%), Positives = 84/160 (52%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXMTGAARR-GPLSNA 59
M+ +DMSLDDIIKS +K +G +RR A
Sbjct: 1 MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSN----SGPSRRFANRVGA 56
Query: 60 RPSSYTIAKSFRRTRNFPWQHDLF--EDSLRAA----------GISGIEVGTKLYVSNLH 107
R + Y+ ++ + WQ+D+F + S+ AA G S IE GTKLY+SNL
Sbjct: 57 RTAPYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLD 116
Query: 108 PGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFA 147
GV+N+DI+ELFSE+G+LKRY IH+D++GR ++ F+
Sbjct: 117 YGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFS 156
>MGI|MGI:1913144 [details] [associations]
symbol:Alyref2 "Aly/REF export factor 2" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1913144 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 InterPro:IPR025715
Pfam:PF13865 KO:K12881 EMBL:AJ252141 EMBL:AK048243 IPI:IPI00311103
IPI:IPI00377350 RefSeq:NP_062357.3 UniGene:Mm.389208 PDB:2F3J
PDB:2KT5 PDB:2YKA PDBsum:2F3J PDBsum:2KT5 PDBsum:2YKA
ProteinModelPortal:Q9JJW6 SMR:Q9JJW6 IntAct:Q9JJW6 STRING:Q9JJW6
PhosphoSite:Q9JJW6 PaxDb:Q9JJW6 PRIDE:Q9JJW6 GeneID:56009
KEGG:mmu:56009 CTD:56009 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 InParanoid:Q9JJW6 OrthoDB:EOG4MW87F
EvolutionaryTrace:Q9JJW6 NextBio:311734 CleanEx:MM_REFBP2
Genevestigator:Q9JJW6 GermOnline:ENSMUSG00000060244 Uniprot:Q9JJW6
Length = 218
Score = 163 (62.4 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 39/91 (42%), Positives = 53/91 (58%)
Query: 49 GAARRGPLSNARPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNL 106
G RR + AR A + R + P WQHDLF+ G G+E G KL VSNL
Sbjct: 26 GGPRRNRPAIARGGRNRPAP-YSRPKPLPDKWQHDLFDSG--CGGGEGVETGAKLLVSNL 82
Query: 107 HPGVTNDDIRELFSEIGELKRYAIHFDKNGR 137
GV++ DI+ELF+E G LK+ A+ +D++GR
Sbjct: 83 DFGVSDADIQELFAEFGTLKKAAVDYDRSGR 113
Score = 52 (23.4 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 1 MATHVDMSLDDIIK 14
MA +DMSLDDIIK
Sbjct: 1 MADKMDMSLDDIIK 14
>UNIPROTKB|E1C2L5 [details] [associations]
symbol:THOC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000346
"transcription export complex" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 GO:GO:0071013
InterPro:IPR025715 Pfam:PF13865 GO:GO:0000346
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:AADN02053597
IPI:IPI00576073 ProteinModelPortal:E1C2L5
Ensembl:ENSGALT00000011710 Uniprot:E1C2L5
Length = 258
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 55/144 (38%), Positives = 72/144 (50%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXM-TGAARRGPLSN- 58
MA +DMSLDDIIK + + G A GP+ N
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGGGRGGGRGGRGRGGVTRGGGPGRGGVGAGRAGGGPVRNR 60
Query: 59 ---ARPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTND 113
AR + R + P WQHDLF DS AG +G+E G KL VSNL GV++
Sbjct: 61 PVMARGGGRNRPAPYSRPKQLPEKWQHDLF-DSGFGAG-AGVETGGKLLVSNLDFGVSDA 118
Query: 114 DIRELFSEIGELKRYAIHFDKNGR 137
DI+ELF+E G LK+ A+H+D++GR
Sbjct: 119 DIQELFAEFGTLKKAAVHYDRSGR 142
>ZFIN|ZDB-GENE-070928-29 [details] [associations]
symbol:alyref "Aly/REF export factor" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070928-29 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:CU693479
IPI:IPI00868115 Ensembl:ENSDART00000108647 ArrayExpress:F1Q9D1
Bgee:F1Q9D1 Uniprot:F1Q9D1
Length = 280
Score = 161 (61.7 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 38/97 (39%), Positives = 58/97 (59%)
Query: 54 GPLSNARPSSYTIAKS--FRRTRNFP--WQHDLFEDSLRA---------AGISGIEVGTK 100
GP+ N + S ++ + R + P WQHDLF++ + G +G+E G K
Sbjct: 67 GPMRNRQNLSRGRSRPTPYSRPKQLPDKWQHDLFDNGYSSNAGGGGGGGGGGAGVETGGK 126
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR 137
L VSNL GV++ DI+ELF+E G LK+ A+H+D++GR
Sbjct: 127 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR 163
Score = 55 (24.4 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 1 MATHVDMSLDDIIKSRKK 18
MA +DMSLDDIIK ++
Sbjct: 1 MADKMDMSLDDIIKQNRQ 18
>MGI|MGI:1341044 [details] [associations]
symbol:Alyref "Aly/REF export factor" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000346 "transcription export complex" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0006810 "transport" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1341044 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH466558
GO:GO:0003697 GO:GO:0051028 EMBL:AL663030 InterPro:IPR025715
Pfam:PF13865 KO:K12881 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 OrthoDB:EOG4MW87F CTD:10189
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:U89876 EMBL:AJ252140
EMBL:BC120588 EMBL:BC137658 EMBL:AK035721 IPI:IPI00114407
IPI:IPI00122339 RefSeq:NP_035698.1 UniGene:Mm.1886 PDB:1NO8
PDBsum:1NO8 ProteinModelPortal:O08583 SMR:O08583 DIP:DIP-59977N
STRING:O08583 PhosphoSite:O08583 PaxDb:O08583 PRIDE:O08583
Ensembl:ENSMUST00000026125 GeneID:21681 KEGG:mmu:21681
UCSC:uc007mtl.1 InParanoid:Q0VBL5 EvolutionaryTrace:O08583
NextBio:300988 Bgee:O08583 CleanEx:MM_THOC4 Genevestigator:O08583
GermOnline:ENSMUSG00000025134 Uniprot:O08583
Length = 255
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 52/147 (35%), Positives = 68/147 (46%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXMTGAARRGPLSNAR 60
MA +DMSLDDIIK + GP+ N R
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGG-GPMRN-R 58
Query: 61 PSSYTIAKSFRRTRNFP----------WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGV 110
P+ A R R P WQHDLF+ G +G+E G KL VSNL GV
Sbjct: 59 PAIARGAAGGGRNRPAPYSRPKQLPDKWQHDLFDSGF--GGGAGVETGGKLLVSNLDFGV 116
Query: 111 TNDDIRELFSEIGELKRYAIHFDKNGR 137
++ DI+ELF+E G LK+ A+H+D++GR
Sbjct: 117 SDADIQELFAEFGTLKKAAVHYDRSGR 143
>UNIPROTKB|Q3T0I4 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0046784 "intronless viral mRNA
export from host nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000346 "transcription export complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 InterPro:IPR025715 Pfam:PF13865
GO:GO:0000346 GO:GO:0046784 KO:K12881 HSSP:Q9NQ94 eggNOG:NOG316507
HOGENOM:HOG000239962 OrthoDB:EOG4MW87F EMBL:BC102384
IPI:IPI00710588 RefSeq:NP_001030494.1 UniGene:Bt.48992
ProteinModelPortal:Q3T0I4 SMR:Q3T0I4 STRING:Q3T0I4 PRIDE:Q3T0I4
Ensembl:ENSBTAT00000011202 GeneID:537706 KEGG:bta:537706 CTD:10189
GeneTree:ENSGT00410000025615 InParanoid:Q3T0I4 OMA:IRNRPAI
NextBio:20877198 Uniprot:Q3T0I4
Length = 257
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 51/148 (34%), Positives = 69/148 (46%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXMTGAARRGPLSNAR 60
MA +DMSLDDIIK + GP+ N R
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGG-GPIRN-R 58
Query: 61 PSSYTIAKS---------FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPG 109
P+ A + R + P WQHDLF+ G +G+E G KL VSNL G
Sbjct: 59 PAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGF--GGGAGVETGGKLLVSNLDFG 116
Query: 110 VTNDDIRELFSEIGELKRYAIHFDKNGR 137
V++ DI+ELF+E G LK+ A+H+D++GR
Sbjct: 117 VSDADIQELFAEFGTLKKAAVHYDRSGR 144
>UNIPROTKB|F1PL92 [details] [associations]
symbol:ALYREF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715
Pfam:PF13865 GeneTree:ENSGT00410000025615 OMA:IRNRPAI
EMBL:AAEX03006169 Ensembl:ENSCAFT00000009466 Uniprot:F1PL92
Length = 257
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 51/148 (34%), Positives = 69/148 (46%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXMTGAARRGPLSNAR 60
MA +DMSLDDIIK + GP+ N R
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVSRGG-GPIRN-R 58
Query: 61 PSSYTIAKS---------FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPG 109
P+ A + R + P WQHDLF+ G +G+E G KL VSNL G
Sbjct: 59 PALARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGF--GGGAGVETGGKLLVSNLDFG 116
Query: 110 VTNDDIRELFSEIGELKRYAIHFDKNGR 137
V++ DI+ELF+E G LK+ A+H+D++GR
Sbjct: 117 VSDADIQELFAEFGTLKKAAVHYDRSGR 144
>UNIPROTKB|E9PB61 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC145207 InterPro:IPR025715 Pfam:PF13865 KO:K12881 CTD:10189
OMA:IRNRPAI RefSeq:NP_005773.3 UniGene:Hs.534385 DNASU:10189
GeneID:10189 KEGG:hsa:10189 HGNC:HGNC:19071 GenomeRNAi:10189
NextBio:38562 IPI:IPI00328840 ProteinModelPortal:E9PB61 SMR:E9PB61
IntAct:E9PB61 PRIDE:E9PB61 Ensembl:ENST00000505490 UCSC:uc002kbu.2
ArrayExpress:E9PB61 Bgee:E9PB61 Uniprot:E9PB61
Length = 264
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 51/148 (34%), Positives = 69/148 (46%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXMTGAARRGPLSNAR 60
MA +DMSLDDIIK + GP+ N R
Sbjct: 8 MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGG-GPIRN-R 65
Query: 61 PSSYTIAKS---------FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPG 109
P+ A + R + P WQHDLF+ G +G+E G KL VSNL G
Sbjct: 66 PAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGF--GGGAGVETGGKLLVSNLDFG 123
Query: 110 VTNDDIRELFSEIGELKRYAIHFDKNGR 137
V++ DI+ELF+E G LK+ A+H+D++GR
Sbjct: 124 VSDADIQELFAEFGTLKKAAVHYDRSGR 151
>UNIPROTKB|Q86V81 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000346 "transcription export complex" evidence=IDA]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC145207 GO:GO:0000398
GO:GO:0071013 Reactome:REACT_1788 GO:GO:0006369 InterPro:IPR025715
Pfam:PF13865 GO:GO:0031124 Reactome:REACT_78 GO:GO:0000346
GO:GO:0046784 KO:K12881 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 CTD:10189 EMBL:BC052302 EMBL:AF047002
IPI:IPI01010794 RefSeq:NP_005773.3 UniGene:Hs.534385 PDB:3ULH
PDBsum:3ULH ProteinModelPortal:Q86V81 SMR:Q86V81 DIP:DIP-32711N
IntAct:Q86V81 MINT:MINT-5001811 STRING:Q86V81 PhosphoSite:Q86V81
DMDM:48429165 PaxDb:Q86V81 PRIDE:Q86V81 DNASU:10189
Ensembl:ENST00000331204 GeneID:10189 KEGG:hsa:10189
GeneCards:GC17M079849 HGNC:HGNC:19071 HPA:CAB016281 HPA:HPA019799
MIM:604171 neXtProt:NX_Q86V81 PharmGKB:PA134925107
InParanoid:Q86V81 GenomeRNAi:10189 NextBio:38562 PMAP-CutDB:Q86V81
ArrayExpress:Q86V81 Bgee:Q86V81 CleanEx:HS_THOC4
Genevestigator:Q86V81 GermOnline:ENSG00000183684 Uniprot:Q86V81
Length = 257
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 51/148 (34%), Positives = 69/148 (46%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXMTGAARRGPLSNAR 60
MA +DMSLDDIIK + GP+ N R
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGG-GPIRN-R 58
Query: 61 PSSYTIAKS---------FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPG 109
P+ A + R + P WQHDLF+ G +G+E G KL VSNL G
Sbjct: 59 PAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGF--GGGAGVETGGKLLVSNLDFG 116
Query: 110 VTNDDIRELFSEIGELKRYAIHFDKNGR 137
V++ DI+ELF+E G LK+ A+H+D++GR
Sbjct: 117 VSDADIQELFAEFGTLKKAAVHYDRSGR 144
>RGD|1594679 [details] [associations]
symbol:Thoc4 "THO complex 4" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000346
"transcription export complex" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1594679
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473948
KO:K12881 GeneTree:ENSGT00410000025615 IPI:IPI00768839
RefSeq:NP_001103072.1 UniGene:Rn.6994 Ensembl:ENSRNOT00000054955
GeneID:690585 KEGG:rno:690585 CTD:690585 NextBio:741240
Uniprot:D3ZXH7
Length = 189
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 51/148 (34%), Positives = 69/148 (46%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXMTGAARRGPLSNAR 60
MA +DMSLDDIIK + GP+ N R
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGG-GPMRN-R 58
Query: 61 PSSYTIAKS---------FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPG 109
P+ A + R + P WQHDLF+ G +G+E G KL VSNL G
Sbjct: 59 PAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGF--GGGAGVETGGKLLVSNLDFG 116
Query: 110 VTNDDIRELFSEIGELKRYAIHFDKNGR 137
V++ DI+ELF+E G LK+ A+H+D++GR
Sbjct: 117 VSDADIQELFAEFGTLKKAAVHYDRSGR 144
>FB|FBgn0010774 [details] [associations]
symbol:Ref1 "RNA and export factor binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0031965 "nuclear membrane"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005654 GO:GO:0000166
GO:GO:0031965 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0003713
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR025715
Pfam:PF13865 KO:K12881 HSSP:O08583 eggNOG:NOG316507
GeneTree:ENSGT00410000025615 OMA:IRNRPAI ChiTaRS:ALYREF
EMBL:AF172637 RefSeq:NP_651968.1 UniGene:Dm.3104 SMR:Q9V3E7
IntAct:Q9V3E7 MINT:MINT-318070 STRING:Q9V3E7
EnsemblMetazoa:FBtr0081642 GeneID:44029 KEGG:dme:Dmel_CG1101
UCSC:CG1101-RA CTD:44029 FlyBase:FBgn0010774 InParanoid:Q9V3E7
OrthoDB:EOG470S0M GenomeRNAi:44029 NextBio:836635 Uniprot:Q9V3E7
Length = 266
Score = 167 (63.8 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 45/148 (30%), Positives = 68/148 (45%)
Query: 1 MATHVDMSLDDIIKS---RKKSEXXX--------XXXXXXXXXXXXXXXXXXXXXXXMTG 49
M ++MSLDDIIKS +KK + G
Sbjct: 1 MVDKIEMSLDDIIKSTRSQKKPQAARGGPGGARKTGGQQRFAGGARRGGANAGGSPRKPG 60
Query: 50 AARRGPLSNARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPG 109
+ +GP + AK R N W+HD+++ R A + G T+L V NL G
Sbjct: 61 SVLKGPRGGVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRGA-VGGGSGPTRLIVGNLDYG 119
Query: 110 VTNDDIRELFSEIGELKRYAIHFDKNGR 137
V+N DI+ELF++ G +K+ A+H+D++GR
Sbjct: 120 VSNTDIKELFNDFGPIKKAAVHYDRSGR 147
>DICTYBASE|DDB_G0285361 [details] [associations]
symbol:DDB_G0285361 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285361 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 KO:K12881
eggNOG:NOG316507 RefSeq:XP_638266.1 ProteinModelPortal:Q54NB4
IntAct:Q54NB4 STRING:Q54NB4 PRIDE:Q54NB4 EnsemblProtists:DDB0233771
GeneID:8625074 KEGG:ddi:DDB_G0285361 InParanoid:Q54NB4 OMA:ISNLHHA
Uniprot:Q54NB4
Length = 327
Score = 105 (42.0 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR 137
G++L +SNLH ++ D++ LF +GE+K+ IH+D +GR
Sbjct: 240 GSRLNISNLHHAISEADLKVLFDSLGEIKQIKIHYDHSGR 279
Score = 41 (19.5 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 6 DMSLDDIIKSRKKSE 20
D+SLD IK+ K S+
Sbjct: 3 DISLDQYIKNNKSSQ 17
>ASPGD|ASPL0000065384 [details] [associations]
symbol:AN7706 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001304 EMBL:AACD01000131 InterPro:IPR025715 Pfam:PF13865
KO:K12881 eggNOG:NOG316507 OrthoDB:EOG4DV8WK RefSeq:XP_680975.1
ProteinModelPortal:Q5AVH4 EnsemblFungi:CADANIAT00000838
GeneID:2869696 KEGG:ani:AN7706.2 HOGENOM:HOG000174259 OMA:LHYDITE
Uniprot:Q5AVH4
Length = 328
Score = 107 (42.7 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 34/117 (29%), Positives = 51/117 (43%)
Query: 53 RGPLSNARPSSYTIAKSFRRTR---NFPWQHDLFEDSLRAAGISG--------------- 94
RGP + R S+ + K +R R + W HD +ED G
Sbjct: 22 RGPRNQGRRSN-GVKKPYRDERVDLDLDWVHDKYEDDRDTRPSRGGRRPRVDRYSPSPDR 80
Query: 95 -IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFS 150
GT+L + NLH +T D+ ELFS IG + ++ +D+ GR S + T+S
Sbjct: 81 SASAGTRLRIENLHYDITETDLEELFSRIGPISNVSLVYDRAGR---SEGVAYVTYS 134
Score = 35 (17.4 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 5 VDMSLDDIIKSRKKSE 20
+D SLD+II R + +
Sbjct: 1 MDRSLDEIIAERPQRQ 16
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.134 0.415 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 184 158 0.00085 106 3 11 22 0.46 31
30 0.43 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 15
No. of states in DFA: 596 (63 KB)
Total size of DFA: 158 KB (2094 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.25u 0.11s 15.36t Elapsed: 00:00:01
Total cpu time: 15.26u 0.11s 15.37t Elapsed: 00:00:01
Start: Fri May 10 03:51:06 2013 End: Fri May 10 03:51:07 2013